0.009944 0.000000 0.000000 0.000000 0.009944 0.000000 0.000000 0.000000 0.008146 0.00000 0.00000 0.00000 Mizohata, E. Nakayama, T. Kado, Y. Inoue, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 100.566 100.566 122.756 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 1878-4186 27 519 10.1016/j.str.2018.11.002 30595454 Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface. 2019 100 1 CCD 2010-11-01 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL38B1 SPring-8 1.0000 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 9776.106 Roundabout homolog 1 1 man polymer 23098.506 Light chain of the anti-human Robo1 antibody B5209B Fab 1 man polymer 23499.217 Heavy chain of the anti-human Robo1 antibody B5209B Fab 1 man polymer 18.015 water 159 nat water Deleted in U twenty twenty,H-Robo-1 no no MGPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG EATWSAYIEVQ MGPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG EATWSAYIEVQ A polypeptide(L) no no DIQMTQSPASLSASVGETVTITCGASENIYGALTWYQRKQGKSPQLLIYGAINLADDKSSRFSGSGSGRQYSLKISSLHP DDVATYYCQNVLSTPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR DIQMTQSPASLSASVGETVTITCGASENIYGALTWYQRKQGKSPQLLIYGAINLADDKSSRFSGSGSGRQYSLKISSLHP DDVATYYCQNVLSTPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR L polypeptide(L) no no EVQLVESGGGVVQPGGSLKLSCAASGFTFSTYDMSWVRQTPDKRLELVATINSNGGSTYYPDSVKGRFTSSRDNAKNILY LQMSSLKSEDTAMYYCAREALLRPPYYALDYWGQGTSVTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVT VTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEP EVQLVESGGGVVQPGGSLKLSCAASGFTFSTYDMSWVRQTPDKRLELVATINSNGGSTYYPDSVKGRFTSSRDNAKNILY LQMSSLKSEDTAMYYCAREALLRPPYYALDYWGQGTSVTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVT VTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEP H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 91 ROBO1, DUTT1 9606 Homo sapiens 562 Escherichia coli Biological sequence sample 1 211 10090 Mus musculus HEK293 9606 Homo sapiens Biological sequence sample 1 221 10090 Mus musculus HEK293 9606 Homo sapiens Biological sequence 1 2.75 55.32 VAPOR DIFFUSION, SITTING DROP 5.6 100 mM sodium citrate tribasic dihydrate (pH 5.6), 10% (w/v) PEG 8000, 10% (v/v) 2-propanol 293 citation repository Initial release Data collection Database references 1 0 2019-01-30 1 1 2019-03-20 _citation.journal_volume _citation.page_first _citation.year Japan FIRST Program-MDADD N PDBJ Y PDBJ 2018-07-02 REL REL 1 A O HOH 119 7.24 1 A O HOH 120 8.08 1 A O HOH 121 9.29 1 L O HOH 369 6.16 1 L O HOH 370 6.79 1 L O HOH 371 6.94 1 L O HOH 372 6.96 1 L O HOH 373 7.48 1 L O HOH 374 7.56 1 L O HOH 375 8.48 1 L O HOH 376 8.64 1 L O HOH 377 8.92 1 H O HOH 355 6.51 1 H O HOH 356 6.73 1 H O HOH 357 7.22 1 H O HOH 358 8.39 1 H O HOH 359 8.78 1 H O HOH 360 9.37 1 H O HOH 361 9.89 HOH water HOH 154 4 HOH HOH 101 A HOH 4 4 HOH HOH 102 A HOH 3 4 HOH HOH 103 A HOH 103 4 HOH HOH 104 A HOH 157 4 HOH HOH 105 A HOH 100 4 HOH HOH 106 A HOH 152 4 HOH HOH 107 A HOH 99 4 HOH HOH 108 A HOH 115 4 HOH HOH 109 A HOH 102 4 HOH HOH 110 A HOH 29 4 HOH HOH 111 A HOH 75 4 HOH HOH 112 A HOH 71 4 HOH HOH 113 A HOH 1 4 HOH HOH 114 A HOH 136 4 HOH HOH 115 A HOH 2 4 HOH HOH 116 A HOH 5 4 HOH HOH 117 A HOH 28 4 HOH HOH 118 A HOH 128 4 HOH HOH 119 A HOH 138 4 HOH HOH 120 A HOH 120 4 HOH HOH 121 A HOH 104 4 HOH HOH 301 L HOH 15 4 HOH HOH 302 L HOH 48 4 HOH HOH 303 L HOH 98 4 HOH HOH 304 L HOH 141 4 HOH HOH 305 L HOH 105 4 HOH HOH 306 L HOH 90 4 HOH HOH 307 L HOH 77 4 HOH HOH 308 L HOH 131 4 HOH HOH 309 L HOH 30 4 HOH HOH 310 L HOH 8 4 HOH HOH 311 L HOH 61 4 HOH HOH 312 L HOH 42 4 HOH HOH 313 L HOH 82 4 HOH HOH 314 L HOH 41 4 HOH HOH 315 L HOH 70 4 HOH HOH 316 L HOH 50 4 HOH HOH 317 L HOH 134 4 HOH HOH 318 L HOH 16 4 HOH HOH 319 L HOH 17 4 HOH HOH 320 L HOH 20 4 HOH HOH 321 L HOH 74 4 HOH HOH 322 L HOH 156 4 HOH HOH 323 L HOH 83 4 HOH HOH 324 L HOH 59 4 HOH HOH 325 L HOH 6 4 HOH HOH 326 L HOH 58 4 HOH HOH 327 L HOH 84 4 HOH HOH 328 L HOH 106 4 HOH HOH 329 L HOH 110 4 HOH HOH 330 L HOH 49 4 HOH HOH 331 L HOH 43 4 HOH HOH 332 L HOH 78 4 HOH HOH 333 L HOH 80 4 HOH HOH 334 L HOH 10 4 HOH HOH 335 L HOH 135 4 HOH HOH 336 L HOH 39 4 HOH HOH 337 L HOH 111 4 HOH HOH 338 L HOH 87 4 HOH HOH 339 L HOH 19 4 HOH HOH 340 L HOH 12 4 HOH HOH 341 L HOH 132 4 HOH HOH 342 L HOH 142 4 HOH HOH 343 L HOH 155 4 HOH HOH 344 L HOH 44 4 HOH HOH 345 L HOH 101 4 HOH HOH 346 L HOH 62 4 HOH HOH 347 L HOH 18 4 HOH HOH 348 L HOH 123 4 HOH HOH 349 L HOH 11 4 HOH HOH 350 L HOH 92 4 HOH HOH 351 L HOH 125 4 HOH HOH 352 L HOH 148 4 HOH HOH 353 L HOH 133 4 HOH HOH 354 L HOH 112 4 HOH HOH 355 L HOH 45 4 HOH HOH 356 L HOH 107 4 HOH HOH 357 L HOH 85 4 HOH HOH 358 L HOH 143 4 HOH HOH 359 L HOH 124 4 HOH HOH 360 L HOH 145 4 HOH HOH 361 L HOH 126 4 HOH HOH 362 L HOH 51 4 HOH HOH 363 L HOH 140 4 HOH HOH 364 L HOH 36 4 HOH HOH 365 L HOH 147 4 HOH HOH 366 L HOH 27 4 HOH HOH 367 L HOH 73 4 HOH HOH 368 L HOH 14 4 HOH HOH 369 L HOH 93 4 HOH HOH 370 L HOH 13 4 HOH HOH 371 L HOH 94 4 HOH HOH 372 L HOH 116 4 HOH HOH 373 L HOH 37 4 HOH HOH 374 L HOH 139 4 HOH HOH 375 L HOH 91 4 HOH HOH 376 L HOH 38 4 HOH HOH 377 L HOH 81 4 HOH HOH 301 H HOH 109 4 HOH HOH 302 H HOH 121 4 HOH HOH 303 H HOH 63 4 HOH HOH 304 H HOH 122 4 HOH HOH 305 H HOH 35 4 HOH HOH 306 H HOH 89 4 HOH HOH 307 H HOH 31 4 HOH HOH 308 H HOH 118 4 HOH HOH 309 H HOH 55 4 HOH HOH 310 H HOH 60 4 HOH HOH 311 H HOH 86 4 HOH HOH 312 H HOH 34 4 HOH HOH 313 H HOH 54 4 HOH HOH 314 H HOH 56 4 HOH HOH 315 H HOH 64 4 HOH HOH 316 H HOH 25 4 HOH HOH 317 H HOH 159 4 HOH HOH 318 H HOH 153 4 HOH HOH 319 H HOH 130 4 HOH HOH 320 H HOH 68 4 HOH HOH 321 H HOH 7 4 HOH HOH 322 H HOH 88 4 HOH HOH 323 H HOH 72 4 HOH HOH 324 H HOH 46 4 HOH HOH 325 H HOH 33 4 HOH HOH 326 H HOH 57 4 HOH HOH 327 H HOH 53 4 HOH HOH 328 H HOH 137 4 HOH HOH 329 H HOH 97 4 HOH HOH 330 H HOH 24 4 HOH HOH 331 H HOH 96 4 HOH HOH 332 H HOH 69 4 HOH HOH 333 H HOH 21 4 HOH HOH 334 H HOH 22 4 HOH HOH 335 H HOH 95 4 HOH HOH 336 H HOH 108 4 HOH HOH 337 H HOH 26 4 HOH HOH 338 H HOH 40 4 HOH HOH 339 H HOH 119 4 HOH HOH 340 H HOH 47 4 HOH HOH 341 H HOH 23 4 HOH HOH 342 H HOH 113 4 HOH HOH 343 H HOH 52 4 HOH HOH 344 H HOH 9 4 HOH HOH 345 H HOH 114 4 HOH HOH 346 H HOH 65 4 HOH HOH 347 H HOH 76 4 HOH HOH 348 H HOH 127 4 HOH HOH 349 H HOH 66 4 HOH HOH 350 H HOH 158 4 HOH HOH 351 H HOH 79 4 HOH HOH 352 H HOH 129 4 HOH HOH 353 H HOH 149 4 HOH HOH 354 H HOH 117 4 HOH HOH 355 H HOH 146 4 HOH HOH 356 H HOH 32 4 HOH HOH 357 H HOH 67 4 HOH HOH 358 H HOH 150 4 HOH HOH 359 H HOH 144 4 HOH HOH 360 H HOH 151 4 HOH HOH 361 H MET 7 n 1 MET 7 A GLY 8 n 2 GLY 8 A PRO 9 n 3 PRO 9 A VAL 10 n 4 VAL 10 A ILE 11 n 5 ILE 11 A ARG 12 n 6 ARG 12 A GLN 13 n 7 GLN 13 A GLY 14 n 8 GLY 14 A PRO 15 n 9 PRO 15 A VAL 16 n 10 VAL 16 A ASN 17 n 11 ASN 17 A GLN 18 n 12 GLN 18 A THR 19 n 13 THR 19 A VAL 20 n 14 VAL 20 A ALA 21 n 15 ALA 21 A VAL 22 n 16 VAL 22 A ASP 23 n 17 ASP 23 A GLY 24 n 18 GLY 24 A THR 25 n 19 THR 25 A PHE 26 n 20 PHE 26 A VAL 27 n 21 VAL 27 A LEU 28 n 22 LEU 28 A SER 29 n 23 SER 29 A CYS 30 n 24 CYS 30 A VAL 31 n 25 VAL 31 A ALA 32 n 26 ALA 32 A THR 33 n 27 THR 33 A GLY 34 n 28 GLY 34 A SER 35 n 29 SER 35 A PRO 36 n 30 PRO 36 A VAL 37 n 31 VAL 37 A PRO 38 n 32 PRO 38 A THR 39 n 33 THR 39 A ILE 40 n 34 ILE 40 A LEU 41 n 35 LEU 41 A TRP 42 n 36 TRP 42 A ARG 43 n 37 ARG 43 A LYS 44 n 38 LYS 44 A ASP 45 n 39 ASP 45 A GLY 46 n 40 GLY 46 A VAL 47 n 41 VAL 47 A LEU 48 n 42 LEU 48 A VAL 49 n 43 VAL 49 A SER 50 n 44 SER 50 A THR 51 n 45 THR 51 A GLN 52 n 46 GLN 52 A ASP 53 n 47 ASP 53 A SER 54 n 48 SER 54 A ARG 55 n 49 ARG 55 A ILE 56 n 50 ILE 56 A LYS 57 n 51 LYS 57 A GLN 58 n 52 GLN 58 A LEU 59 n 53 LEU 59 A GLU 60 n 54 GLU 60 A ASN 61 n 55 ASN 61 A GLY 62 n 56 GLY 62 A VAL 63 n 57 VAL 63 A LEU 64 n 58 LEU 64 A GLN 65 n 59 GLN 65 A ILE 66 n 60 ILE 66 A ARG 67 n 61 ARG 67 A TYR 68 n 62 TYR 68 A ALA 69 n 63 ALA 69 A LYS 70 n 64 LYS 70 A LEU 71 n 65 LEU 71 A GLY 72 n 66 GLY 72 A ASP 73 n 67 ASP 73 A THR 74 n 68 THR 74 A GLY 75 n 69 GLY 75 A ARG 76 n 70 ARG 76 A TYR 77 n 71 TYR 77 A THR 78 n 72 THR 78 A CYS 79 n 73 CYS 79 A ILE 80 n 74 ILE 80 A ALA 81 n 75 ALA 81 A SER 82 n 76 SER 82 A THR 83 n 77 THR 83 A PRO 84 n 78 PRO 84 A SER 85 n 79 SER 85 A GLY 86 n 80 GLY 86 A GLU 87 n 81 GLU 87 A ALA 88 n 82 ALA 88 A THR 89 n 83 THR 89 A TRP 90 n 84 TRP 90 A SER 91 n 85 SER 91 A ALA 92 n 86 ALA 92 A TYR 93 n 87 TYR 93 A ILE 94 n 88 ILE 94 A GLU 95 n 89 GLU 95 A VAL 96 n 90 VAL 96 A GLN 97 n 91 GLN 97 A ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L GLN 3 n 3 GLN 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L ALA 13 n 13 ALA 13 L SER 14 n 14 SER 14 L VAL 15 n 15 VAL 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L THR 18 n 18 THR 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L THR 22 n 22 THR 22 L CYS 23 n 23 CYS 23 L GLY 24 n 24 GLY 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLU 27 n 27 GLU 27 L ASN 28 n 28 ASN 28 L ILE 29 n 29 ILE 29 L TYR 30 n 30 TYR 30 L GLY 31 n 31 GLY 31 L ALA 32 n 32 ALA 32 L LEU 33 n 33 LEU 33 L THR 34 n 34 THR 34 L TRP 35 n 35 TRP 35 L TYR 36 n 36 TYR 36 L GLN 37 n 37 GLN 37 L ARG 38 n 38 ARG 38 L LYS 39 n 39 LYS 39 L GLN 40 n 40 GLN 40 L GLY 41 n 41 GLY 41 L LYS 42 n 42 LYS 42 L SER 43 n 43 SER 43 L PRO 44 n 44 PRO 44 L GLN 45 n 45 GLN 45 L LEU 46 n 46 LEU 46 L LEU 47 n 47 LEU 47 L ILE 48 n 48 ILE 48 L TYR 49 n 49 TYR 49 L GLY 50 n 50 GLY 50 L ALA 51 n 51 ALA 51 L ILE 52 n 52 ILE 52 L ASN 53 n 53 ASN 53 L LEU 54 n 54 LEU 54 L ALA 55 n 55 ALA 55 L ASP 56 n 56 ASP 56 L ASP 57 n 57 ASP 57 L LYS 58 n 58 LYS 58 L SER 59 n 59 SER 59 L SER 60 n 60 SER 60 L ARG 61 n 61 ARG 61 L PHE 62 n 62 PHE 62 L SER 63 n 63 SER 63 L GLY 64 n 64 GLY 64 L SER 65 n 65 SER 65 L GLY 66 n 66 GLY 66 L SER 67 n 67 SER 67 L GLY 68 n 68 GLY 68 L ARG 69 n 69 ARG 69 L GLN 70 n 70 GLN 70 L TYR 71 n 71 TYR 71 L SER 72 n 72 SER 72 L LEU 73 n 73 LEU 73 L LYS 74 n 74 LYS 74 L ILE 75 n 75 ILE 75 L SER 76 n 76 SER 76 L SER 77 n 77 SER 77 L LEU 78 n 78 LEU 78 L HIS 79 n 79 HIS 79 L PRO 80 n 80 PRO 80 L ASP 81 n 81 ASP 81 L ASP 82 n 82 ASP 82 L VAL 83 n 83 VAL 83 L ALA 84 n 84 ALA 84 L THR 85 n 85 THR 85 L TYR 86 n 86 TYR 86 L TYR 87 n 87 TYR 87 L CYS 88 n 88 CYS 88 L GLN 89 n 89 GLN 89 L ASN 90 n 90 ASN 90 L VAL 91 n 91 VAL 91 L LEU 92 n 92 LEU 92 L SER 93 n 93 SER 93 L THR 94 n 94 THR 94 L PRO 95 n 95 PRO 95 L PHE 96 n 96 PHE 96 L THR 97 n 97 THR 97 L PHE 98 n 98 PHE 98 L GLY 99 n 99 GLY 99 L SER 100 n 100 SER 100 L GLY 101 n 101 GLY 101 L THR 102 n 102 THR 102 L LYS 103 n 103 LYS 103 L LEU 104 n 104 LEU 104 L GLU 105 n 105 GLU 105 L ILE 106 n 106 ILE 106 L LYS 107 n 107 LYS 107 L ARG 108 n 108 ARG 108 L ALA 109 n 109 ALA 109 L ASP 110 n 110 ASP 110 L ALA 111 n 111 ALA 111 L ALA 112 n 112 ALA 112 L PRO 113 n 113 PRO 113 L THR 114 n 114 THR 114 L VAL 115 n 115 VAL 115 L SER 116 n 116 SER 116 L ILE 117 n 117 ILE 117 L PHE 118 n 118 PHE 118 L PRO 119 n 119 PRO 119 L PRO 120 n 120 PRO 120 L SER 121 n 121 SER 121 L SER 122 n 122 SER 122 L GLU 123 n 123 GLU 123 L GLN 124 n 124 GLN 124 L LEU 125 n 125 LEU 125 L THR 126 n 126 THR 126 L SER 127 n 127 SER 127 L GLY 128 n 128 GLY 128 L GLY 129 n 129 GLY 129 L ALA 130 n 130 ALA 130 L SER 131 n 131 SER 131 L VAL 132 n 132 VAL 132 L VAL 133 n 133 VAL 133 L CYS 134 n 134 CYS 134 L PHE 135 n 135 PHE 135 L LEU 136 n 136 LEU 136 L ASN 137 n 137 ASN 137 L ASN 138 n 138 ASN 138 L PHE 139 n 139 PHE 139 L TYR 140 n 140 TYR 140 L PRO 141 n 141 PRO 141 L LYS 142 n 142 LYS 142 L ASP 143 n 143 ASP 143 L ILE 144 n 144 ILE 144 L ASN 145 n 145 ASN 145 L VAL 146 n 146 VAL 146 L LYS 147 n 147 LYS 147 L TRP 148 n 148 TRP 148 L LYS 149 n 149 LYS 149 L ILE 150 n 150 ILE 150 L ASP 151 n 151 ASP 151 L GLY 152 n 152 GLY 152 L SER 153 n 153 SER 153 L GLU 154 n 154 GLU 154 L ARG 155 n 155 ARG 155 L GLN 156 n 156 GLN 156 L ASN 157 n 157 ASN 157 L GLY 158 n 158 GLY 158 L VAL 159 n 159 VAL 159 L LEU 160 n 160 LEU 160 L ASN 161 n 161 ASN 161 L SER 162 n 162 SER 162 L TRP 163 n 163 TRP 163 L THR 164 n 164 THR 164 L ASP 165 n 165 ASP 165 L GLN 166 n 166 GLN 166 L ASP 167 n 167 ASP 167 L SER 168 n 168 SER 168 L LYS 169 n 169 LYS 169 L ASP 170 n 170 ASP 170 L SER 171 n 171 SER 171 L THR 172 n 172 THR 172 L TYR 173 n 173 TYR 173 L SER 174 n 174 SER 174 L MET 175 n 175 MET 175 L SER 176 n 176 SER 176 L SER 177 n 177 SER 177 L THR 178 n 178 THR 178 L LEU 179 n 179 LEU 179 L THR 180 n 180 THR 180 L LEU 181 n 181 LEU 181 L THR 182 n 182 THR 182 L LYS 183 n 183 LYS 183 L ASP 184 n 184 ASP 184 L GLU 185 n 185 GLU 185 L TYR 186 n 186 TYR 186 L GLU 187 n 187 GLU 187 L ARG 188 n 188 ARG 188 L HIS 189 n 189 HIS 189 L ASN 190 n 190 ASN 190 L SER 191 n 191 SER 191 L TYR 192 n 192 TYR 192 L THR 193 n 193 THR 193 L CYS 194 n 194 CYS 194 L GLU 195 n 195 GLU 195 L ALA 196 n 196 ALA 196 L THR 197 n 197 THR 197 L HIS 198 n 198 HIS 198 L LYS 199 n 199 LYS 199 L THR 200 n 200 THR 200 L SER 201 n 201 SER 201 L THR 202 n 202 THR 202 L SER 203 n 203 SER 203 L PRO 204 n 204 PRO 204 L ILE 205 n 205 ILE 205 L VAL 206 n 206 VAL 206 L LYS 207 n 207 LYS 207 L SER 208 n 208 SER 208 L PHE 209 n 209 PHE 209 L ASN 210 n 210 ASN 210 L ARG 211 n 211 ARG 211 L GLU -1 n 1 GLU -1 H VAL 0 n 2 VAL 0 H GLN 1 n 3 GLN 1 H LEU 2 n 4 LEU 2 H VAL 3 n 5 VAL 3 H GLU 4 n 6 GLU 4 H SER 5 n 7 SER 5 H GLY 6 n 8 GLY 6 H GLY 7 n 9 GLY 7 H GLY 8 n 10 GLY 8 H VAL 9 n 11 VAL 9 H VAL 10 n 12 VAL 10 H GLN 11 n 13 GLN 11 H PRO 12 n 14 PRO 12 H GLY 13 n 15 GLY 13 H GLY 14 n 16 GLY 14 H SER 15 n 17 SER 15 H LEU 16 n 18 LEU 16 H LYS 17 n 19 LYS 17 H LEU 18 n 20 LEU 18 H SER 19 n 21 SER 19 H CYS 20 n 22 CYS 20 H ALA 21 n 23 ALA 21 H ALA 22 n 24 ALA 22 H SER 23 n 25 SER 23 H GLY 24 n 26 GLY 24 H PHE 25 n 27 PHE 25 H THR 26 n 28 THR 26 H PHE 27 n 29 PHE 27 H SER 28 n 30 SER 28 H THR 29 n 31 THR 29 H TYR 30 n 32 TYR 30 H ASP 31 n 33 ASP 31 H MET 32 n 34 MET 32 H SER 33 n 35 SER 33 H TRP 34 n 36 TRP 34 H VAL 35 n 37 VAL 35 H ARG 36 n 38 ARG 36 H GLN 37 n 39 GLN 37 H THR 38 n 40 THR 38 H PRO 39 n 41 PRO 39 H ASP 40 n 42 ASP 40 H LYS 41 n 43 LYS 41 H ARG 42 n 44 ARG 42 H LEU 43 n 45 LEU 43 H GLU 44 n 46 GLU 44 H LEU 45 n 47 LEU 45 H VAL 46 n 48 VAL 46 H ALA 47 n 49 ALA 47 H THR 48 n 50 THR 48 H ILE 49 n 51 ILE 49 H ASN 50 n 52 ASN 50 H SER 51 n 53 SER 51 H ASN 52 n 54 ASN 52 H GLY 53 n 55 GLY 53 H GLY 54 n 56 GLY 54 H SER 55 n 57 SER 55 H THR 56 n 58 THR 56 H TYR 57 n 59 TYR 57 H TYR 58 n 60 TYR 58 H PRO 59 n 61 PRO 59 H ASP 60 n 62 ASP 60 H SER 61 n 63 SER 61 H VAL 62 n 64 VAL 62 H LYS 63 n 65 LYS 63 H GLY 64 n 66 GLY 64 H ARG 65 n 67 ARG 65 H PHE 66 n 68 PHE 66 H THR 67 n 69 THR 67 H SER 68 n 70 SER 68 H SER 69 n 71 SER 69 H ARG 70 n 72 ARG 70 H ASP 71 n 73 ASP 71 H ASN 72 n 74 ASN 72 H ALA 73 n 75 ALA 73 H LYS 74 n 76 LYS 74 H ASN 75 n 77 ASN 75 H ILE 76 n 78 ILE 76 H LEU 77 n 79 LEU 77 H TYR 78 n 80 TYR 78 H LEU 79 n 81 LEU 79 H GLN 80 n 82 GLN 80 H MET 81 n 83 MET 81 H SER 82 n 84 SER 82 H SER 83 n 85 SER 83 H LEU 84 n 86 LEU 84 H LYS 85 n 87 LYS 85 H SER 86 n 88 SER 86 H GLU 87 n 89 GLU 87 H ASP 88 n 90 ASP 88 H THR 89 n 91 THR 89 H ALA 90 n 92 ALA 90 H MET 91 n 93 MET 91 H TYR 92 n 94 TYR 92 H TYR 93 n 95 TYR 93 H CYS 94 n 96 CYS 94 H ALA 95 n 97 ALA 95 H ARG 96 n 98 ARG 96 H GLU 97 n 99 GLU 97 H ALA 98 n 100 ALA 98 H LEU 99 n 101 LEU 99 H LEU 100 n 102 LEU 100 H ARG 101 n 103 ARG 101 H PRO 102 n 104 PRO 102 H PRO 103 n 105 PRO 103 H TYR 104 n 106 TYR 104 H TYR 105 n 107 TYR 105 H ALA 106 n 108 ALA 106 H LEU 107 n 109 LEU 107 H ASP 108 n 110 ASP 108 H TYR 109 n 111 TYR 109 H TRP 110 n 112 TRP 110 H GLY 111 n 113 GLY 111 H GLN 112 n 114 GLN 112 H GLY 113 n 115 GLY 113 H THR 114 n 116 THR 114 H SER 115 n 117 SER 115 H VAL 116 n 118 VAL 116 H THR 117 n 119 THR 117 H VAL 118 n 120 VAL 118 H SER 119 n 121 SER 119 H SER 120 n 122 SER 120 H ALA 121 n 123 ALA 121 H LYS 122 n 124 LYS 122 H THR 123 n 125 THR 123 H THR 124 n 126 THR 124 H PRO 125 n 127 PRO 125 H PRO 126 n 128 PRO 126 H SER 127 n 129 SER 127 H VAL 128 n 130 VAL 128 H TYR 129 n 131 TYR 129 H PRO 130 n 132 PRO 130 H LEU 131 n 133 LEU 131 H ALA 132 n 134 ALA 132 H PRO 133 n 135 PRO 133 H GLY 134 n 136 GLY 134 H n 137 A 134 H n 138 B 134 H n 139 C 134 H n 140 D 134 H THR 137 n 141 THR 137 H GLY 138 n 142 GLY 138 H SER 139 n 143 SER 139 H SER 140 n 144 SER 140 H VAL 141 n 145 VAL 141 H THR 142 n 146 THR 142 H LEU 143 n 147 LEU 143 H GLY 144 n 148 GLY 144 H CYS 145 n 149 CYS 145 H LEU 146 n 150 LEU 146 H VAL 147 n 151 VAL 147 H LYS 148 n 152 LYS 148 H GLY 149 n 153 GLY 149 H TYR 150 n 154 TYR 150 H PHE 151 n 155 PHE 151 H PRO 152 n 156 PRO 152 H GLU 153 n 157 GLU 153 H SER 154 n 158 SER 154 H VAL 155 n 159 VAL 155 H THR 156 n 160 THR 156 H VAL 157 n 161 VAL 157 H THR 158 n 162 THR 158 H TRP 159 n 163 TRP 159 H ASN 160 n 164 ASN 160 H SER 161 n 165 SER 161 H GLY 162 n 166 GLY 162 H SER 163 n 167 SER 163 H LEU 164 n 168 LEU 164 H SER 165 n 169 SER 165 H SER 166 n 170 SER 166 H SER 167 n 171 SER 167 H VAL 168 n 172 VAL 168 H HIS 169 n 173 HIS 169 H THR 170 n 174 THR 170 H PHE 171 n 175 PHE 171 H PRO 172 n 176 PRO 172 H ALA 173 n 177 ALA 173 H LEU 174 n 178 LEU 174 H LEU 175 n 179 LEU 175 H GLN 176 n 180 GLN 176 H SER 177 n 181 SER 177 H GLY 178 n 182 GLY 178 H LEU 179 n 183 LEU 179 H TYR 180 n 184 TYR 180 H THR 181 n 185 THR 181 H MET 182 n 186 MET 182 H SER 183 n 187 SER 183 H SER 184 n 188 SER 184 H SER 185 n 189 SER 185 H VAL 186 n 190 VAL 186 H THR 187 n 191 THR 187 H VAL 188 n 192 VAL 188 H PRO 189 n 193 PRO 189 H SER 190 n 194 SER 190 H SER 191 n 195 SER 191 H THR 192 n 196 THR 192 H TRP 193 n 197 TRP 193 H PRO 194 n 198 PRO 194 H SER 195 n 199 SER 195 H GLN 196 n 200 GLN 196 H THR 197 n 201 THR 197 H VAL 198 n 202 VAL 198 H THR 199 n 203 THR 199 H CYS 200 n 204 CYS 200 H SER 201 n 205 SER 201 H VAL 202 n 206 VAL 202 H ALA 203 n 207 ALA 203 H HIS 204 n 208 HIS 204 H PRO 205 n 209 PRO 205 H ALA 206 n 210 ALA 206 H SER 207 n 211 SER 207 H SER 208 n 212 SER 208 H THR 209 n 213 THR 209 H THR 210 n 214 THR 210 H VAL 211 n 215 VAL 211 H ASP 212 n 216 ASP 212 H LYS 213 n 217 LYS 213 H LYS 214 n 218 LYS 214 H LEU 215 n 219 LEU 215 H GLU 216 n 220 GLU 216 H PRO 217 n 221 PRO 217 H author_and_software_defined_assembly PISA 3 trimeric gel filtration 5070 -31 23040 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 12 A N ARG 6 A O VAL 31 A O VAL 25 A N GLN 18 A N GLN 12 A O GLU 95 A O GLU 89 A O ALA 92 A O ALA 86 A N TYR 77 A N TYR 71 A O SER 82 A O SER 76 A N THR 39 A N THR 33 A N LYS 44 A N LYS 38 A O VAL 47 A O VAL 41 A N LEU 28 A N LEU 22 A O LEU 64 A O LEU 58 A O GLN 65 A O GLN 59 A N LYS 57 A N LYS 51 L N THR 5 B N THR 5 L O GLY 24 B O GLY 24 L N ILE 21 B N ILE 21 L O LEU 73 B O LEU 73 L O LYS 74 B O LYS 74 L N SER 63 B N SER 63 L N LEU 11 B N LEU 11 L O GLU 105 B O GLU 105 L O THR 102 B O THR 102 L N TYR 86 B N TYR 86 L O THR 85 B O THR 85 L N ARG 38 B N ARG 38 L N TRP 35 B N TRP 35 L O LEU 47 B O LEU 47 L N TYR 49 B N TYR 49 L O ASN 53 B O ASN 53 L N SER 116 B N SER 116 L O PHE 135 B O PHE 135 L N PHE 139 B N PHE 139 L O TYR 173 B O TYR 173 L O THR 178 B O THR 178 L N LEU 160 B N LEU 160 L O SER 153 B O SER 153 L N ILE 150 B N ILE 150 L N ASN 145 B N ASN 145 L O THR 197 B O THR 197 L N ALA 196 B N ALA 196 L O ILE 205 B O ILE 205 H N SER 5 C N SER 7 H O SER 19 C O SER 21 H N LEU 16 C N LEU 18 H O MET 81 C O MET 83 H O GLN 80 C O GLN 82 H N THR 67 C N THR 69 H N GLY 8 C N GLY 10 H O THR 117 C O THR 119 H O THR 114 C O THR 116 H N TYR 92 C N TYR 94 H O TYR 93 C O TYR 95 H N VAL 35 C N VAL 37 H N ARG 36 C N ARG 38 H O GLU 44 C O GLU 46 H N THR 48 C N THR 50 H O TYR 57 C O TYR 59 H N GLY 8 C N GLY 10 H O THR 117 C O THR 119 H O THR 114 C O THR 116 H N TYR 92 C N TYR 94 H N ARG 96 C N ARG 98 H O TYR 109 C O TYR 111 H N TYR 129 C N TYR 131 H O LEU 146 C O LEU 150 H N VAL 147 C N VAL 151 H O MET 182 C O MET 186 H O LEU 179 C O LEU 183 H N GLN 176 C N GLN 180 H N THR 158 C N THR 162 H O SER 201 C O SER 205 H N VAL 202 C N VAL 206 H O VAL 211 C O VAL 215 A 1 H CYS 134 C CYS 137 1 Y B 1 H GLY 134 C GLY 138 1 Y C 1 H ASP 134 C ASP 139 1 Y D 1 H THR 134 C THR 140 1 Y 1 L L NE O ARG LYS 38 42 2.19 B 1 A A GLY PRO 8 9 -146.50 1 3.35 0.50 120.30 123.65 A A A NE CZ NH1 ARG ARG ARG 76 76 76 N 1 -3.10 0.50 120.30 117.20 L L L NE CZ NH2 ARG ARG ARG 108 108 108 N 1 5.79 0.90 118.30 124.09 L L L CB CG OD1 ASP ASP ASP 170 170 170 N 1 L L O O HOH HOH 351 351 1.21 1_555 7_555 1 A ASP 23 79.51 -11.72 1 A VAL 37 -39.13 125.27 1 A ASP 45 39.70 53.26 1 A GLN 52 -39.41 -18.74 1 A LEU 59 -101.18 -169.88 1 A THR 83 -176.24 129.74 1 L ALA 51 67.78 -35.96 1 L ALA 84 177.19 170.42 1 L SER 127 -68.70 0.24 1 L GLU 154 -33.38 149.71 1 H SER 139 76.49 -39.01 1 H SER 154 87.04 99.65 1 H ASN 160 31.65 59.02 1 H GLU 216 -125.81 -77.08 56.661 -1.87 0.00 0.00 -1.87 0.00 3.74 0.955 0.939 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.27820 0.23801 0.23994 2.00 50.0 2048 39899 4.9 97.16 7.349 0.182 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.204 0.183 0.80 0.80 1.20 2.00 50.0 159 4090 0 0 3931 0.019 0.020 4039 0.002 0.020 3624 2.102 1.952 5501 1.118 3.000 8459 7.996 5.000 519 37.743 24.079 152 18.583 15.000 647 17.350 15.000 19 0.130 0.200 632 0.010 0.021 4461 0.002 0.020 794 5.469 5.635 2079 5.468 5.633 2078 7.332 8.418 2594 7.331 8.420 2595 5.586 5.910 1960 5.584 5.912 1961 7.599 8.715 2906 10.524 16281 10.522 16230 0.466 0.451 2.052 145 2975 20 99.46 2.00 50 6A77 42067 1 56.9 10.4 97.1 2.00 2.07 1 refinement REFMAC 5.8.0158 data reduction HKL-2000 model building Coot phasing PHASER N Roundabout homolog 1, Light chain of the anti-human Robo1 antibody B5209B Fab, Heavy chain of the anti-human Robo1 antibody B5209B Fab Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the Fab fragment of murine monoclonal antibody B5209B 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A LYS 70 A LYS 64 HELX_P A THR 74 A THR 68 5 AA1 5 L HIS 79 B HIS 79 HELX_P L VAL 83 B VAL 83 5 AA2 5 L SER 121 B SER 121 HELX_P L SER 127 B SER 127 1 AA3 7 L LYS 183 B LYS 183 HELX_P L ARG 188 B ARG 188 1 AA4 6 H THR 26 C THR 28 HELX_P H TYR 30 C TYR 32 5 AA5 5 H PRO 59 C PRO 61 HELX_P H LYS 63 C LYS 65 5 AA6 5 H LYS 85 C LYS 87 HELX_P H THR 89 C THR 91 5 AA7 5 H SER 161 C SER 165 HELX_P H SER 163 C SER 167 5 AA8 3 H LEU 164 C LEU 168 HELX_P H SER 166 C SER 170 5 AA9 3 H PRO 205 C PRO 209 HELX_P H SER 208 C SER 212 5 AB1 4 disulf 1.987 A CYS 30 A SG CYS 24 1_555 A CYS 79 A SG CYS 73 1_555 disulf 2.098 L CYS 23 B SG CYS 23 1_555 L CYS 88 B SG CYS 88 1_555 disulf 2.057 L CYS 134 B SG CYS 134 1_555 L CYS 194 B SG CYS 194 1_555 disulf 2.102 A H CYS 20 C SG CYS 22 1_555 H CYS 94 C SG CYS 96 1_555 disulf 2.127 B H CYS 20 C SG CYS 22 1_555 H CYS 94 C SG CYS 96 1_555 disulf 2.026 H CYS 145 C SG CYS 149 1_555 H CYS 200 C SG CYS 204 1_555 IMMUNE SYSTEM hepatocellular carcinoma antigen, angiogenesis, immune system, antibody drug A MET 7 A MET 1 1 A GLY 8 A GLY 2 9.84 A SER 35 A SER 29 1 A PRO 36 A PRO 30 -4.17 L SER 7 B SER 7 1 L PRO 8 B PRO 8 -17.40 L THR 94 B THR 94 1 L PRO 95 B PRO 95 -8.31 L TYR 140 B TYR 140 1 L PRO 141 B PRO 141 4.35 H ARG 101 C ARG 103 1 H PRO 102 C PRO 104 -10.29 H PHE 151 C PHE 155 1 H PRO 152 C PRO 156 -3.47 H TRP 193 C TRP 197 1 H PRO 194 C PRO 198 6.58 ROBO1_HUMAN UNP 1 455 Q9Y6N7 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEA TWSAYIEVQ 6A77 PDB 2 1 6A77 6A77 PDB 3 1 6A77 455 543 6A77 9 97 Q9Y6N7 A 1 3 91 1 211 6A77 1 211 6A77 L 2 1 211 -1 217 6A77 -1 217 6A77 H 3 1 221 1 expression tag MET 7 6A77 A Q9Y6N7 UNP 1 1 expression tag GLY 8 6A77 A Q9Y6N7 UNP 2 2 5 3 4 6 4 4 4 6 4 4 3 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 10 A VAL 4 A GLN 13 A GLN 7 A VAL 31 A VAL 25 A THR 33 A THR 27 A GLN 18 A GLN 12 A ALA 21 A ALA 15 A GLY 86 A GLY 80 A GLN 97 A GLN 91 A GLY 75 A GLY 69 A THR 83 A THR 77 A THR 39 A THR 33 A LYS 44 A LYS 38 A VAL 47 A VAL 41 A LEU 48 A LEU 42 A PHE 26 A PHE 20 A SER 29 A SER 23 A VAL 63 A VAL 57 A ILE 66 A ILE 60 A ILE 56 A ILE 50 A GLN 58 A GLN 52 L MET 4 B MET 4 L SER 7 B SER 7 L VAL 19 B VAL 19 L ALA 25 B ALA 25 L GLN 70 B GLN 70 L ILE 75 B ILE 75 L PHE 62 B PHE 62 L SER 67 B SER 67 L SER 10 B SER 10 L SER 14 B SER 14 L THR 102 B THR 102 L LYS 107 B LYS 107 L ALA 84 B ALA 84 L ASN 90 B ASN 90 L LEU 33 B LEU 33 L ARG 38 B ARG 38 L GLN 45 B GLN 45 L TYR 49 B TYR 49 L ASN 53 B ASN 53 L LEU 54 B LEU 54 L THR 114 B THR 114 L PHE 118 B PHE 118 L GLY 129 B GLY 129 L PHE 139 B PHE 139 L TYR 173 B TYR 173 L THR 182 B THR 182 L VAL 159 B VAL 159 L TRP 163 B TRP 163 L SER 153 B SER 153 L ARG 155 B ARG 155 L ASN 145 B ASN 145 L ILE 150 B ILE 150 L SER 191 B SER 191 L HIS 198 B HIS 198 L SER 201 B SER 201 L ASN 210 B ASN 210 H GLN 1 C GLN 3 H SER 5 C SER 7 H LEU 16 C LEU 18 H SER 23 C SER 25 H ILE 76 C ILE 78 H MET 81 C MET 83 H PHE 66 C PHE 68 H ASP 71 C ASP 73 H GLY 8 C GLY 10 H VAL 10 C VAL 12 H THR 114 C THR 116 H VAL 118 C VAL 120 H ALA 90 C ALA 92 H GLU 97 C GLU 99 H MET 32 C MET 34 H GLN 37 C GLN 39 H LEU 43 C LEU 45 H ILE 49 C ILE 51 H THR 56 C THR 58 H TYR 57 C TYR 59 H GLY 8 C GLY 10 H VAL 10 C VAL 12 H THR 114 C THR 116 H VAL 118 C VAL 120 H ALA 90 C ALA 92 H GLU 97 C GLU 99 H LEU 107 C LEU 109 H TRP 110 C TRP 112 H SER 127 C SER 129 H LEU 131 C LEU 133 H SER 140 C SER 144 H TYR 150 C TYR 154 H LEU 179 C LEU 183 H PRO 189 C PRO 193 H VAL 168 C VAL 172 H GLN 176 C GLN 180 H THR 156 C THR 160 H TRP 159 C TRP 163 H THR 199 C THR 203 H HIS 204 C HIS 208 H THR 209 C THR 213 H LYS 214 C LYS 218 96 P 43 21 2