0.022868
0.000000
0.007700
-0.000000
0.018403
0.000000
0.000000
-0.000000
0.015803
0.00000
0.00000
0.00000
Takahashi, Y.
Suzuki, M.
Yamamoto, K.
Saito, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
108.61
90.00
43.730
54.338
66.770
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C30 H28 N4 O3
492.568
3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
C
N
185
N
O
N
186
N
N
N
187
N
N
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
Y
192
N
C
Y
193
N
C
Y
194
N
C
Y
195
N
C
Y
196
N
C
Y
197
N
C
N
198
N
O
N
199
N
C
Y
200
N
C
Y
201
N
C
Y
202
N
C
Y
203
N
C
Y
204
N
C
Y
205
N
C
N
206
N
C
Y
207
N
N
Y
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
Y
212
N
N
Y
213
N
C
Y
214
N
C
Y
215
N
C
Y
216
N
C
Y
217
N
C
Y
218
N
C
N
219
N
C
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
N
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
S
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
R
C
N
374
N
O
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
doub
Y
174
N
sing
Y
175
N
sing
Y
176
N
doub
Y
177
N
doub
Y
178
N
sing
N
179
N
sing
N
180
N
sing
Y
181
N
doub
Y
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
E
doub
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
Y
190
N
doub
Y
191
N
sing
Y
192
N
doub
N
193
N
sing
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
N
198
N
sing
N
199
N
sing
Y
200
N
sing
Y
201
N
sing
Y
202
N
sing
N
203
N
sing
Y
204
N
doub
Y
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
Y
210
N
sing
Y
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
Y
318
N
doub
Y
319
N
sing
Y
320
N
sing
N
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
61
10067
10083
10.1021/acs.jmedchem.8b01200
30351933
Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
2018
0000-0002-2824-0693
0000-0001-7850-8064
10.2210/pdb6ad9/pdb
pdb_00006ad9
100
1
CCD
2009-03-12
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
BL-5A
Photon Factory
1.00000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-5A
32693.824
Peroxisome proliferator-activated receptor gamma
ligand binding domain
1
man
polymer
1265.627
12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
LXLL motif
1
syn
polymer
492.568
3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
1
syn
non-polymer
18.015
water
187
nat
water
PPAR-gamma,Nuclear receptor subfamily 1 group C member 3
PGC1-alpha
no
no
GSHMAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPL
QEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTR
EFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ
LFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY
GSHMAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPL
QEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTR
EFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ
LFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY
A
polypeptide(L)
no
no
PSLLKKLLLAPA
PSLLKKLLLAPA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
287
PPARG, NR1C3
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pET28
1
2.21
44.44
0.681
VAPOR DIFFUSION
8.5
0.5M LiCl, 0.1M Tris-HCl pH 8.5, 28% PEG 6000
293
citation
chem_comp_atom
chem_comp_bond
database_2
refine_hist
repository
Initial release
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2018-11-14
1
1
2018-12-05
1
2
2024-03-27
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine_hist.d_res_low
N
PDBJ
Y
PDBJ
2018-07-31
REL
REL
1
A
O
HOH
781
6.67
1
A
O
HOH
782
7.36
KK4
3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
HOH
water
9606
Human
Homo sapiens
sample
1
12
KK4
1
3
KK4
KK4
501
A
HOH
74
4
HOH
HOH
601
A
HOH
102
4
HOH
HOH
602
A
HOH
26
4
HOH
HOH
603
A
HOH
63
4
HOH
HOH
604
A
HOH
27
4
HOH
HOH
605
A
HOH
130
4
HOH
HOH
606
A
HOH
73
4
HOH
HOH
607
A
HOH
22
4
HOH
HOH
608
A
HOH
49
4
HOH
HOH
609
A
HOH
76
4
HOH
HOH
610
A
HOH
111
4
HOH
HOH
611
A
HOH
20
4
HOH
HOH
612
A
HOH
165
4
HOH
HOH
613
A
HOH
8
4
HOH
HOH
614
A
HOH
58
4
HOH
HOH
615
A
HOH
25
4
HOH
HOH
616
A
HOH
145
4
HOH
HOH
617
A
HOH
51
4
HOH
HOH
618
A
HOH
138
4
HOH
HOH
619
A
HOH
143
4
HOH
HOH
620
A
HOH
179
4
HOH
HOH
621
A
HOH
120
4
HOH
HOH
622
A
HOH
86
4
HOH
HOH
623
A
HOH
67
4
HOH
HOH
624
A
HOH
43
4
HOH
HOH
625
A
HOH
118
4
HOH
HOH
626
A
HOH
10
4
HOH
HOH
627
A
HOH
110
4
HOH
HOH
628
A
HOH
140
4
HOH
HOH
629
A
HOH
40
4
HOH
HOH
630
A
HOH
149
4
HOH
HOH
631
A
HOH
150
4
HOH
HOH
632
A
HOH
54
4
HOH
HOH
633
A
HOH
125
4
HOH
HOH
634
A
HOH
121
4
HOH
HOH
635
A
HOH
39
4
HOH
HOH
636
A
HOH
79
4
HOH
HOH
637
A
HOH
127
4
HOH
HOH
638
A
HOH
166
4
HOH
HOH
639
A
HOH
175
4
HOH
HOH
640
A
HOH
13
4
HOH
HOH
641
A
HOH
46
4
HOH
HOH
642
A
HOH
31
4
HOH
HOH
643
A
HOH
185
4
HOH
HOH
644
A
HOH
9
4
HOH
HOH
645
A
HOH
70
4
HOH
HOH
646
A
HOH
4
4
HOH
HOH
647
A
HOH
5
4
HOH
HOH
648
A
HOH
18
4
HOH
HOH
649
A
HOH
3
4
HOH
HOH
650
A
HOH
33
4
HOH
HOH
651
A
HOH
75
4
HOH
HOH
652
A
HOH
80
4
HOH
HOH
653
A
HOH
6
4
HOH
HOH
654
A
HOH
106
4
HOH
HOH
655
A
HOH
133
4
HOH
HOH
656
A
HOH
174
4
HOH
HOH
657
A
HOH
134
4
HOH
HOH
658
A
HOH
28
4
HOH
HOH
659
A
HOH
21
4
HOH
HOH
660
A
HOH
167
4
HOH
HOH
661
A
HOH
77
4
HOH
HOH
662
A
HOH
60
4
HOH
HOH
663
A
HOH
56
4
HOH
HOH
664
A
HOH
38
4
HOH
HOH
665
A
HOH
156
4
HOH
HOH
666
A
HOH
158
4
HOH
HOH
667
A
HOH
132
4
HOH
HOH
668
A
HOH
68
4
HOH
HOH
669
A
HOH
128
4
HOH
HOH
670
A
HOH
160
4
HOH
HOH
671
A
HOH
122
4
HOH
HOH
672
A
HOH
14
4
HOH
HOH
673
A
HOH
90
4
HOH
HOH
674
A
HOH
85
4
HOH
HOH
675
A
HOH
164
4
HOH
HOH
676
A
HOH
66
4
HOH
HOH
677
A
HOH
15
4
HOH
HOH
678
A
HOH
72
4
HOH
HOH
679
A
HOH
42
4
HOH
HOH
680
A
HOH
47
4
HOH
HOH
681
A
HOH
176
4
HOH
HOH
682
A
HOH
157
4
HOH
HOH
683
A
HOH
83
4
HOH
HOH
684
A
HOH
62
4
HOH
HOH
685
A
HOH
129
4
HOH
HOH
686
A
HOH
186
4
HOH
HOH
687
A
HOH
71
4
HOH
HOH
688
A
HOH
12
4
HOH
HOH
689
A
HOH
136
4
HOH
HOH
690
A
HOH
11
4
HOH
HOH
691
A
HOH
161
4
HOH
HOH
692
A
HOH
88
4
HOH
HOH
693
A
HOH
168
4
HOH
HOH
694
A
HOH
61
4
HOH
HOH
695
A
HOH
151
4
HOH
HOH
696
A
HOH
84
4
HOH
HOH
697
A
HOH
78
4
HOH
HOH
698
A
HOH
112
4
HOH
HOH
699
A
HOH
24
4
HOH
HOH
700
A
HOH
65
4
HOH
HOH
701
A
HOH
81
4
HOH
HOH
702
A
HOH
119
4
HOH
HOH
703
A
HOH
104
4
HOH
HOH
704
A
HOH
23
4
HOH
HOH
705
A
HOH
32
4
HOH
HOH
706
A
HOH
52
4
HOH
HOH
707
A
HOH
94
4
HOH
HOH
708
A
HOH
64
4
HOH
HOH
709
A
HOH
59
4
HOH
HOH
710
A
HOH
45
4
HOH
HOH
711
A
HOH
115
4
HOH
HOH
712
A
HOH
30
4
HOH
HOH
713
A
HOH
29
4
HOH
HOH
714
A
HOH
41
4
HOH
HOH
715
A
HOH
44
4
HOH
HOH
716
A
HOH
172
4
HOH
HOH
717
A
HOH
19
4
HOH
HOH
718
A
HOH
55
4
HOH
HOH
719
A
HOH
152
4
HOH
HOH
720
A
HOH
184
4
HOH
HOH
721
A
HOH
171
4
HOH
HOH
722
A
HOH
7
4
HOH
HOH
723
A
HOH
37
4
HOH
HOH
724
A
HOH
92
4
HOH
HOH
725
A
HOH
148
4
HOH
HOH
726
A
HOH
181
4
HOH
HOH
727
A
HOH
180
4
HOH
HOH
728
A
HOH
95
4
HOH
HOH
729
A
HOH
16
4
HOH
HOH
730
A
HOH
17
4
HOH
HOH
731
A
HOH
2
4
HOH
HOH
732
A
HOH
144
4
HOH
HOH
733
A
HOH
178
4
HOH
HOH
734
A
HOH
170
4
HOH
HOH
735
A
HOH
155
4
HOH
HOH
736
A
HOH
114
4
HOH
HOH
737
A
HOH
177
4
HOH
HOH
738
A
HOH
91
4
HOH
HOH
739
A
HOH
113
4
HOH
HOH
740
A
HOH
1
4
HOH
HOH
741
A
HOH
173
4
HOH
HOH
742
A
HOH
117
4
HOH
HOH
743
A
HOH
100
4
HOH
HOH
744
A
HOH
162
4
HOH
HOH
745
A
HOH
82
4
HOH
HOH
746
A
HOH
146
4
HOH
HOH
747
A
HOH
107
4
HOH
HOH
748
A
HOH
48
4
HOH
HOH
749
A
HOH
89
4
HOH
HOH
750
A
HOH
141
4
HOH
HOH
751
A
HOH
109
4
HOH
HOH
752
A
HOH
93
4
HOH
HOH
753
A
HOH
69
4
HOH
HOH
754
A
HOH
99
4
HOH
HOH
755
A
HOH
98
4
HOH
HOH
756
A
HOH
36
4
HOH
HOH
757
A
HOH
169
4
HOH
HOH
758
A
HOH
57
4
HOH
HOH
759
A
HOH
154
4
HOH
HOH
760
A
HOH
105
4
HOH
HOH
761
A
HOH
35
4
HOH
HOH
762
A
HOH
182
4
HOH
HOH
763
A
HOH
137
4
HOH
HOH
764
A
HOH
101
4
HOH
HOH
765
A
HOH
123
4
HOH
HOH
766
A
HOH
135
4
HOH
HOH
767
A
HOH
103
4
HOH
HOH
768
A
HOH
147
4
HOH
HOH
769
A
HOH
126
4
HOH
HOH
770
A
HOH
139
4
HOH
HOH
771
A
HOH
159
4
HOH
HOH
772
A
HOH
34
4
HOH
HOH
773
A
HOH
153
4
HOH
HOH
774
A
HOH
97
4
HOH
HOH
775
A
HOH
108
4
HOH
HOH
776
A
HOH
53
4
HOH
HOH
777
A
HOH
142
4
HOH
HOH
778
A
HOH
124
4
HOH
HOH
779
A
HOH
87
4
HOH
HOH
780
A
HOH
183
4
HOH
HOH
781
A
HOH
96
4
HOH
HOH
782
A
HOH
50
4
HOH
HOH
701
B
HOH
116
4
HOH
HOH
702
B
HOH
163
4
HOH
HOH
703
B
HOH
187
4
HOH
HOH
704
B
HOH
131
4
HOH
HOH
705
B
2.290
2.290
41.220
41.220
n
1
191
A
n
2
192
A
n
3
193
A
n
4
194
A
n
5
195
A
n
6
196
A
n
7
197
A
n
8
198
A
n
9
199
A
n
10
200
A
n
11
201
A
n
12
202
A
n
13
203
A
n
14
204
A
n
15
205
A
n
16
206
A
n
17
207
A
SER
208
n
18
SER
208
A
ALA
209
n
19
ALA
209
A
ASP
210
n
20
ASP
210
A
LEU
211
n
21
LEU
211
A
ARG
212
n
22
ARG
212
A
ALA
213
n
23
ALA
213
A
LEU
214
n
24
LEU
214
A
ALA
215
n
25
ALA
215
A
LYS
216
n
26
LYS
216
A
HIS
217
n
27
HIS
217
A
LEU
218
n
28
LEU
218
A
TYR
219
n
29
TYR
219
A
ASP
220
n
30
ASP
220
A
SER
221
n
31
SER
221
A
TYR
222
n
32
TYR
222
A
ILE
223
n
33
ILE
223
A
LYS
224
n
34
LYS
224
A
SER
225
n
35
SER
225
A
PHE
226
n
36
PHE
226
A
PRO
227
n
37
PRO
227
A
LEU
228
n
38
LEU
228
A
THR
229
n
39
THR
229
A
LYS
230
n
40
LYS
230
A
ALA
231
n
41
ALA
231
A
LYS
232
n
42
LYS
232
A
ALA
233
n
43
ALA
233
A
ARG
234
n
44
ARG
234
A
ALA
235
n
45
ALA
235
A
ILE
236
n
46
ILE
236
A
LEU
237
n
47
LEU
237
A
THR
238
n
48
THR
238
A
GLY
239
n
49
GLY
239
A
LYS
240
n
50
LYS
240
A
THR
241
n
51
THR
241
A
n
52
242
A
ASP
243
n
53
ASP
243
A
LYS
244
n
54
LYS
244
A
SER
245
n
55
SER
245
A
PRO
246
n
56
PRO
246
A
PHE
247
n
57
PHE
247
A
VAL
248
n
58
VAL
248
A
ILE
249
n
59
ILE
249
A
TYR
250
n
60
TYR
250
A
ASP
251
n
61
ASP
251
A
MET
252
n
62
MET
252
A
ASN
253
n
63
ASN
253
A
SER
254
n
64
SER
254
A
LEU
255
n
65
LEU
255
A
MET
256
n
66
MET
256
A
MET
257
n
67
MET
257
A
GLY
258
n
68
GLY
258
A
GLU
259
n
69
GLU
259
A
ASP
260
n
70
ASP
260
A
LYS
261
n
71
LYS
261
A
n
72
262
A
n
73
263
A
n
74
264
A
n
75
265
A
n
76
266
A
n
77
267
A
n
78
268
A
n
79
269
A
n
80
270
A
n
81
271
A
n
82
272
A
n
83
273
A
n
84
274
A
LYS
275
n
85
LYS
275
A
GLU
276
n
86
GLU
276
A
VAL
277
n
87
VAL
277
A
ALA
278
n
88
ALA
278
A
ILE
279
n
89
ILE
279
A
ARG
280
n
90
ARG
280
A
ILE
281
n
91
ILE
281
A
PHE
282
n
92
PHE
282
A
GLN
283
n
93
GLN
283
A
GLY
284
n
94
GLY
284
A
CYS
285
n
95
CYS
285
A
GLN
286
n
96
GLN
286
A
PHE
287
n
97
PHE
287
A
ARG
288
n
98
ARG
288
A
SER
289
n
99
SER
289
A
VAL
290
n
100
VAL
290
A
GLU
291
n
101
GLU
291
A
ALA
292
n
102
ALA
292
A
VAL
293
n
103
VAL
293
A
GLN
294
n
104
GLN
294
A
GLU
295
n
105
GLU
295
A
ILE
296
n
106
ILE
296
A
THR
297
n
107
THR
297
A
GLU
298
n
108
GLU
298
A
TYR
299
n
109
TYR
299
A
ALA
300
n
110
ALA
300
A
LYS
301
n
111
LYS
301
A
SER
302
n
112
SER
302
A
ILE
303
n
113
ILE
303
A
PRO
304
n
114
PRO
304
A
GLY
305
n
115
GLY
305
A
PHE
306
n
116
PHE
306
A
VAL
307
n
117
VAL
307
A
ASN
308
n
118
ASN
308
A
LEU
309
n
119
LEU
309
A
ASP
310
n
120
ASP
310
A
LEU
311
n
121
LEU
311
A
ASN
312
n
122
ASN
312
A
ASP
313
n
123
ASP
313
A
GLN
314
n
124
GLN
314
A
VAL
315
n
125
VAL
315
A
THR
316
n
126
THR
316
A
LEU
317
n
127
LEU
317
A
LEU
318
n
128
LEU
318
A
LYS
319
n
129
LYS
319
A
TYR
320
n
130
TYR
320
A
GLY
321
n
131
GLY
321
A
VAL
322
n
132
VAL
322
A
HIS
323
n
133
HIS
323
A
GLU
324
n
134
GLU
324
A
ILE
325
n
135
ILE
325
A
ILE
326
n
136
ILE
326
A
TYR
327
n
137
TYR
327
A
THR
328
n
138
THR
328
A
MET
329
n
139
MET
329
A
LEU
330
n
140
LEU
330
A
ALA
331
n
141
ALA
331
A
SER
332
n
142
SER
332
A
LEU
333
n
143
LEU
333
A
MET
334
n
144
MET
334
A
ASN
335
n
145
ASN
335
A
LYS
336
n
146
LYS
336
A
ASP
337
n
147
ASP
337
A
GLY
338
n
148
GLY
338
A
VAL
339
n
149
VAL
339
A
LEU
340
n
150
LEU
340
A
ILE
341
n
151
ILE
341
A
SER
342
n
152
SER
342
A
GLU
343
n
153
GLU
343
A
GLY
344
n
154
GLY
344
A
GLN
345
n
155
GLN
345
A
GLY
346
n
156
GLY
346
A
PHE
347
n
157
PHE
347
A
MET
348
n
158
MET
348
A
THR
349
n
159
THR
349
A
ARG
350
n
160
ARG
350
A
GLU
351
n
161
GLU
351
A
PHE
352
n
162
PHE
352
A
LEU
353
n
163
LEU
353
A
LYS
354
n
164
LYS
354
A
SER
355
n
165
SER
355
A
LEU
356
n
166
LEU
356
A
ARG
357
n
167
ARG
357
A
LYS
358
n
168
LYS
358
A
PRO
359
n
169
PRO
359
A
PHE
360
n
170
PHE
360
A
GLY
361
n
171
GLY
361
A
ASP
362
n
172
ASP
362
A
PHE
363
n
173
PHE
363
A
MET
364
n
174
MET
364
A
GLU
365
n
175
GLU
365
A
PRO
366
n
176
PRO
366
A
LYS
367
n
177
LYS
367
A
PHE
368
n
178
PHE
368
A
GLU
369
n
179
GLU
369
A
PHE
370
n
180
PHE
370
A
ALA
371
n
181
ALA
371
A
VAL
372
n
182
VAL
372
A
LYS
373
n
183
LYS
373
A
PHE
374
n
184
PHE
374
A
ASN
375
n
185
ASN
375
A
ALA
376
n
186
ALA
376
A
LEU
377
n
187
LEU
377
A
GLU
378
n
188
GLU
378
A
LEU
379
n
189
LEU
379
A
ASP
380
n
190
ASP
380
A
ASP
381
n
191
ASP
381
A
SER
382
n
192
SER
382
A
ASP
383
n
193
ASP
383
A
LEU
384
n
194
LEU
384
A
ALA
385
n
195
ALA
385
A
ILE
386
n
196
ILE
386
A
PHE
387
n
197
PHE
387
A
ILE
388
n
198
ILE
388
A
ALA
389
n
199
ALA
389
A
VAL
390
n
200
VAL
390
A
ILE
391
n
201
ILE
391
A
ILE
392
n
202
ILE
392
A
LEU
393
n
203
LEU
393
A
SER
394
n
204
SER
394
A
GLY
395
n
205
GLY
395
A
ASP
396
n
206
ASP
396
A
ARG
397
n
207
ARG
397
A
PRO
398
n
208
PRO
398
A
GLY
399
n
209
GLY
399
A
LEU
400
n
210
LEU
400
A
LEU
401
n
211
LEU
401
A
ASN
402
n
212
ASN
402
A
VAL
403
n
213
VAL
403
A
LYS
404
n
214
LYS
404
A
PRO
405
n
215
PRO
405
A
ILE
406
n
216
ILE
406
A
GLU
407
n
217
GLU
407
A
ASP
408
n
218
ASP
408
A
ILE
409
n
219
ILE
409
A
GLN
410
n
220
GLN
410
A
ASP
411
n
221
ASP
411
A
ASN
412
n
222
ASN
412
A
LEU
413
n
223
LEU
413
A
LEU
414
n
224
LEU
414
A
GLN
415
n
225
GLN
415
A
ALA
416
n
226
ALA
416
A
LEU
417
n
227
LEU
417
A
GLU
418
n
228
GLU
418
A
LEU
419
n
229
LEU
419
A
GLN
420
n
230
GLN
420
A
LEU
421
n
231
LEU
421
A
LYS
422
n
232
LYS
422
A
LEU
423
n
233
LEU
423
A
ASN
424
n
234
ASN
424
A
HIS
425
n
235
HIS
425
A
PRO
426
n
236
PRO
426
A
GLU
427
n
237
GLU
427
A
SER
428
n
238
SER
428
A
SER
429
n
239
SER
429
A
GLN
430
n
240
GLN
430
A
LEU
431
n
241
LEU
431
A
PHE
432
n
242
PHE
432
A
ALA
433
n
243
ALA
433
A
LYS
434
n
244
LYS
434
A
LEU
435
n
245
LEU
435
A
LEU
436
n
246
LEU
436
A
GLN
437
n
247
GLN
437
A
LYS
438
n
248
LYS
438
A
MET
439
n
249
MET
439
A
THR
440
n
250
THR
440
A
ASP
441
n
251
ASP
441
A
LEU
442
n
252
LEU
442
A
ARG
443
n
253
ARG
443
A
GLN
444
n
254
GLN
444
A
ILE
445
n
255
ILE
445
A
VAL
446
n
256
VAL
446
A
THR
447
n
257
THR
447
A
GLU
448
n
258
GLU
448
A
HIS
449
n
259
HIS
449
A
VAL
450
n
260
VAL
450
A
GLN
451
n
261
GLN
451
A
LEU
452
n
262
LEU
452
A
LEU
453
n
263
LEU
453
A
GLN
454
n
264
GLN
454
A
VAL
455
n
265
VAL
455
A
ILE
456
n
266
ILE
456
A
LYS
457
n
267
LYS
457
A
LYS
458
n
268
LYS
458
A
THR
459
n
269
THR
459
A
GLU
460
n
270
GLU
460
A
THR
461
n
271
THR
461
A
ASP
462
n
272
ASP
462
A
MET
463
n
273
MET
463
A
SER
464
n
274
SER
464
A
LEU
465
n
275
LEU
465
A
HIS
466
n
276
HIS
466
A
PRO
467
n
277
PRO
467
A
LEU
468
n
278
LEU
468
A
LEU
469
n
279
LEU
469
A
GLN
470
n
280
GLN
470
A
GLU
471
n
281
GLU
471
A
ILE
472
n
282
ILE
472
A
TYR
473
n
283
TYR
473
A
LYS
474
n
284
LYS
474
A
ASP
475
n
285
ASP
475
A
LEU
476
n
286
LEU
476
A
n
287
477
A
PRO
603
n
1
PRO
603
B
SER
604
n
2
SER
604
B
LEU
605
n
3
LEU
605
B
LEU
606
n
4
LEU
606
B
LYS
607
n
5
LYS
607
B
LYS
608
n
6
LYS
608
B
LEU
609
n
7
LEU
609
B
LEU
610
n
8
LEU
610
B
LEU
611
n
9
LEU
611
B
ALA
612
n
10
ALA
612
B
n
11
613
B
n
12
614
B
author_and_software_defined_assembly
PISA
2
dimeric
none
1010
-8
13020
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
249
A
N
ILE
59
A
O
PHE
347
A
O
PHE
157
A
O
MET
348
A
O
MET
158
A
N
VAL
339
A
N
VAL
149
A
O
GLY
338
A
O
GLY
148
A
N
ASN
335
A
N
ASN
145
1
A
GLY
191
A
GLY
1
1
Y
1
A
SER
192
A
SER
2
1
Y
1
A
HIS
193
A
HIS
3
1
Y
1
A
MET
194
A
MET
4
1
Y
1
A
ALA
195
A
ALA
5
1
Y
1
A
GLU
196
A
GLU
6
1
Y
1
A
ILE
197
A
ILE
7
1
Y
1
A
SER
198
A
SER
8
1
Y
1
A
SER
199
A
SER
9
1
Y
1
A
ASP
200
A
ASP
10
1
Y
1
A
ILE
201
A
ILE
11
1
Y
1
A
ASP
202
A
ASP
12
1
Y
1
A
GLN
203
A
GLN
13
1
Y
1
A
LEU
204
A
LEU
14
1
Y
1
A
ASN
205
A
ASN
15
1
Y
1
A
PRO
206
A
PRO
16
1
Y
1
A
GLU
207
A
GLU
17
1
Y
1
A
THR
242
A
THR
52
1
Y
1
A
ILE
262
A
ILE
72
1
Y
1
A
LYS
263
A
LYS
73
1
Y
1
A
PHE
264
A
PHE
74
1
Y
1
A
LYS
265
A
LYS
75
1
Y
1
A
HIS
266
A
HIS
76
1
Y
1
A
ILE
267
A
ILE
77
1
Y
1
A
THR
268
A
THR
78
1
Y
1
A
PRO
269
A
PRO
79
1
Y
1
A
LEU
270
A
LEU
80
1
Y
1
A
GLN
271
A
GLN
81
1
Y
1
A
GLU
272
A
GLU
82
1
Y
1
A
GLN
273
A
GLN
83
1
Y
1
A
SER
274
A
SER
84
1
Y
1
A
TYR
477
A
TYR
287
1
Y
1
B
PRO
613
B
PRO
11
1
Y
1
B
ALA
614
B
ALA
12
1
Y
1
A
LYS
240
-114.69
67.85
1
A
SER
342
30.80
79.17
1
A
LEU
393
-89.57
48.00
1
A
GLU
460
-102.13
66.31
1
A
ASP
462
-119.11
56.54
1
A
ASP
475
82.81
-1.55
27.867
-0.68
0.00
-0.60
0.33
-0.00
0.61
0.949
0.912
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23990
0.18451
0.18740
2.20
50.00
762
14420
5.0
99.70
7.220
0.176
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.281
0.217
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.20
50.00
187
2341
37
0
2117
0.014
0.019
2191
0.002
0.020
2204
1.720
2.019
2951
1.027
3.000
5082
5.898
5.000
261
35.225
25.385
91
15.928
15.000
425
15.942
15.000
8
0.107
0.200
340
0.007
0.020
2378
0.002
0.020
457
2.094
2.550
1056
2.083
2.549
1055
3.273
3.797
1313
3.276
3.798
1314
2.745
2.912
1135
2.744
2.912
1136
4.412
4.214
1639
6.294
20.749
2688
6.293
20.751
2689
0.271
0.266
2.258
51
1062
20
99.55
2.200
50.000
6AD9
15196
0.170
1.188
1
4.500
55697
3.700
99.800
0.614
2.200
2.280
1504
1.041
1
3.700
100.000
0.528
2.280
2.370
1505
1.041
1
3.700
99.800
0.482
2.370
2.480
1525
1.109
1
3.700
99.700
0.411
2.480
2.610
1501
1.128
1
3.700
99.700
0.311
2.610
2.770
1518
1.118
1
3.700
99.900
0.240
2.770
2.990
1496
1.126
1
3.700
99.900
0.175
2.990
3.290
1518
1.222
1
3.700
99.800
0.112
3.290
3.760
1528
1.330
1
3.700
99.900
0.092
3.760
4.740
1538
1.445
1
3.600
99.900
0.079
4.740
50.000
1563
1.318
1
3.500
99.000
refinement
REFMAC
5.8.0135
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
HKL-2000
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
HKL-2000
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
10.2.12
data extraction
PDB
deposit@deposit.rcsb.org
Sep. 1, 2017
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.24
N
Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-9
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
SER
208
A
SER
18
HELX_P
A
PHE
226
A
PHE
36
1
AA1
19
A
THR
229
A
THR
39
HELX_P
A
THR
238
A
THR
48
1
AA2
10
A
ASP
251
A
ASP
61
HELX_P
A
GLY
258
A
GLY
68
1
AA3
8
A
GLU
276
A
GLU
86
HELX_P
A
GLY
284
A
GLY
94
1
AA4
9
A
CYS
285
A
CYS
95
HELX_P
A
SER
302
A
SER
112
1
AA5
18
A
ASP
310
A
ASP
120
HELX_P
A
LEU
333
A
LEU
143
1
AA6
24
A
ARG
350
A
ARG
160
HELX_P
A
SER
355
A
SER
165
1
AA7
6
A
PRO
359
A
PRO
169
HELX_P
A
MET
364
A
MET
174
1
AA8
6
A
MET
364
A
MET
174
HELX_P
A
LEU
377
A
LEU
187
1
AA9
14
A
ASP
380
A
ASP
190
HELX_P
A
LEU
393
A
LEU
203
1
AB1
14
A
ASN
402
A
ASN
212
HELX_P
A
HIS
425
A
HIS
235
1
AB2
24
A
GLN
430
A
GLN
240
HELX_P
A
LYS
458
A
LYS
268
1
AB3
29
A
HIS
466
A
HIS
276
HELX_P
A
LYS
474
A
LYS
284
1
AB4
9
B
SER
604
B
SER
2
HELX_P
B
ALA
612
B
ALA
10
1
AB5
9
NUCLEAR PROTEIN
PPARgamma Ligand Binding Domain Agonist, NUCLEAR PROTEIN
A
LYS
358
A
LYS
168
1
A
PRO
359
A
PRO
169
5.43
PPARG_HUMAN
UNP
1
223
P37231
AEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQS
KEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLK
SLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAK
LLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY
PRGC1_HUMAN
UNP
2
141
Q9UBK2
PSLLKKLLLAPA
223
505
6AD9
195
477
P37231
A
1
5
287
141
152
6AD9
603
614
Q9UBK2
B
2
1
12
1
expression tag
GLY
191
6AD9
A
P37231
UNP
1
1
expression tag
SER
192
6AD9
A
P37231
UNP
2
1
expression tag
HIS
193
6AD9
A
P37231
UNP
3
1
expression tag
MET
194
6AD9
A
P37231
UNP
4
4
parallel
anti-parallel
anti-parallel
A
PHE
247
A
PHE
57
A
ILE
249
A
ILE
59
A
GLY
346
A
GLY
156
A
THR
349
A
THR
159
A
GLY
338
A
GLY
148
A
ILE
341
A
ILE
151
A
MET
334
A
MET
144
A
ASN
335
A
ASN
145
binding site for residue KK4 A 501
A
KK4
501
Software
12
A
PHE
282
A
PHE
92
12
1_555
A
GLN
283
A
GLN
93
12
1_555
A
CYS
285
A
CYS
95
12
1_555
A
GLN
286
A
GLN
96
12
1_555
A
SER
289
A
SER
99
12
1_555
A
HIS
323
A
HIS
133
12
1_555
A
TYR
327
A
TYR
137
12
1_555
A
ILE
341
A
ILE
151
12
1_555
A
PHE
363
A
PHE
173
12
1_555
A
MET
364
A
MET
174
12
1_555
A
HIS
449
A
HIS
259
12
1_555
A
TYR
473
A
TYR
283
12
1_555
4
P 1 21 1