0.022868 0.000000 0.007700 -0.000000 0.018403 0.000000 0.000000 -0.000000 0.015803 0.00000 0.00000 0.00000 Takahashi, Y. Suzuki, M. Yamamoto, K. Saito, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 108.61 90.00 43.730 54.338 66.770 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C30 H28 N4 O3 492.568 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N O N 184 N C N 185 N O N 186 N N N 187 N N N 188 N C N 189 N C N 190 N C N 191 N C Y 192 N C Y 193 N C Y 194 N C Y 195 N C Y 196 N C Y 197 N C N 198 N O N 199 N C Y 200 N C Y 201 N C Y 202 N C Y 203 N C Y 204 N C Y 205 N C N 206 N C Y 207 N N Y 208 N C N 209 N C N 210 N C N 211 N C Y 212 N N Y 213 N C Y 214 N C Y 215 N C Y 216 N C Y 217 N C Y 218 N C N 219 N C N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N C N 278 N N N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N S N 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 R C N 374 N O N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N C N 397 N O N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C N 415 N C N 416 N C N 417 N O N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N doub Y 174 N sing Y 175 N sing Y 176 N doub Y 177 N doub Y 178 N sing N 179 N sing N 180 N sing Y 181 N doub Y 182 N sing Y 183 N sing N 184 N sing N 185 E doub N 186 N sing N 187 N sing N 188 N doub N 189 N sing Y 190 N doub Y 191 N sing Y 192 N doub N 193 N sing Y 194 N doub N 195 N sing Y 196 N sing Y 197 N doub N 198 N sing N 199 N sing Y 200 N sing Y 201 N sing Y 202 N sing N 203 N sing Y 204 N doub Y 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing Y 210 N sing Y 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N doub N 323 N sing Y 324 N doub N 325 N sing Y 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing Y 387 N doub Y 388 N sing Y 389 N sing N 390 N sing Y 391 N doub N 392 N sing Y 393 N doub N 394 N sing Y 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing US J. Med. Chem. JMCMAR 0151 1520-4804 61 10067 10083 10.1021/acs.jmedchem.8b01200 30351933 Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers. 2018 0000-0002-2824-0693 0000-0001-7850-8064 10.2210/pdb6ad9/pdb pdb_00006ad9 100 1 CCD 2009-03-12 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.00000 1.0 BL-5A Photon Factory 1.00000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 32693.824 Peroxisome proliferator-activated receptor gamma ligand binding domain 1 man polymer 1265.627 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha LXLL motif 1 syn polymer 492.568 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one 1 syn non-polymer 18.015 water 187 nat water PPAR-gamma,Nuclear receptor subfamily 1 group C member 3 PGC1-alpha no no GSHMAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPL QEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTR EFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ LFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY GSHMAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPL QEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTR EFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ LFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY A polypeptide(L) no no PSLLKKLLLAPA PSLLKKLLLAPA B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 287 PPARG, NR1C3 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET28 1 2.21 44.44 0.681 VAPOR DIFFUSION 8.5 0.5M LiCl, 0.1M Tris-HCl pH 8.5, 28% PEG 6000 293 citation chem_comp_atom chem_comp_bond database_2 refine_hist repository Initial release Data collection Database references Data collection Database references Refinement description 1 0 2018-11-14 1 1 2018-12-05 1 2 2024-03-27 _citation.journal_volume _citation.page_first _citation.page_last _database_2.pdbx_DOI _database_2.pdbx_database_accession _refine_hist.d_res_low N PDBJ Y PDBJ 2018-07-31 REL REL 1 A O HOH 781 6.67 1 A O HOH 782 7.36 KK4 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one HOH water 9606 Human Homo sapiens sample 1 12 KK4 1 3 KK4 KK4 501 A HOH 74 4 HOH HOH 601 A HOH 102 4 HOH HOH 602 A HOH 26 4 HOH HOH 603 A HOH 63 4 HOH HOH 604 A HOH 27 4 HOH HOH 605 A HOH 130 4 HOH HOH 606 A HOH 73 4 HOH HOH 607 A HOH 22 4 HOH HOH 608 A HOH 49 4 HOH HOH 609 A HOH 76 4 HOH HOH 610 A HOH 111 4 HOH HOH 611 A HOH 20 4 HOH HOH 612 A HOH 165 4 HOH HOH 613 A HOH 8 4 HOH HOH 614 A HOH 58 4 HOH HOH 615 A HOH 25 4 HOH HOH 616 A HOH 145 4 HOH HOH 617 A HOH 51 4 HOH HOH 618 A HOH 138 4 HOH HOH 619 A HOH 143 4 HOH HOH 620 A HOH 179 4 HOH HOH 621 A HOH 120 4 HOH HOH 622 A HOH 86 4 HOH HOH 623 A HOH 67 4 HOH HOH 624 A HOH 43 4 HOH HOH 625 A HOH 118 4 HOH HOH 626 A HOH 10 4 HOH HOH 627 A HOH 110 4 HOH HOH 628 A HOH 140 4 HOH HOH 629 A HOH 40 4 HOH HOH 630 A HOH 149 4 HOH HOH 631 A HOH 150 4 HOH HOH 632 A HOH 54 4 HOH HOH 633 A HOH 125 4 HOH HOH 634 A HOH 121 4 HOH HOH 635 A HOH 39 4 HOH HOH 636 A HOH 79 4 HOH HOH 637 A HOH 127 4 HOH HOH 638 A HOH 166 4 HOH HOH 639 A HOH 175 4 HOH HOH 640 A HOH 13 4 HOH HOH 641 A HOH 46 4 HOH HOH 642 A HOH 31 4 HOH HOH 643 A HOH 185 4 HOH HOH 644 A HOH 9 4 HOH HOH 645 A HOH 70 4 HOH HOH 646 A HOH 4 4 HOH HOH 647 A HOH 5 4 HOH HOH 648 A HOH 18 4 HOH HOH 649 A HOH 3 4 HOH HOH 650 A HOH 33 4 HOH HOH 651 A HOH 75 4 HOH HOH 652 A HOH 80 4 HOH HOH 653 A HOH 6 4 HOH HOH 654 A HOH 106 4 HOH HOH 655 A HOH 133 4 HOH HOH 656 A HOH 174 4 HOH HOH 657 A HOH 134 4 HOH HOH 658 A HOH 28 4 HOH HOH 659 A HOH 21 4 HOH HOH 660 A HOH 167 4 HOH HOH 661 A HOH 77 4 HOH HOH 662 A HOH 60 4 HOH HOH 663 A HOH 56 4 HOH HOH 664 A HOH 38 4 HOH HOH 665 A HOH 156 4 HOH HOH 666 A HOH 158 4 HOH HOH 667 A HOH 132 4 HOH HOH 668 A HOH 68 4 HOH HOH 669 A HOH 128 4 HOH HOH 670 A HOH 160 4 HOH HOH 671 A HOH 122 4 HOH HOH 672 A HOH 14 4 HOH HOH 673 A HOH 90 4 HOH HOH 674 A HOH 85 4 HOH HOH 675 A HOH 164 4 HOH HOH 676 A HOH 66 4 HOH HOH 677 A HOH 15 4 HOH HOH 678 A HOH 72 4 HOH HOH 679 A HOH 42 4 HOH HOH 680 A HOH 47 4 HOH HOH 681 A HOH 176 4 HOH HOH 682 A HOH 157 4 HOH HOH 683 A HOH 83 4 HOH HOH 684 A HOH 62 4 HOH HOH 685 A HOH 129 4 HOH HOH 686 A HOH 186 4 HOH HOH 687 A HOH 71 4 HOH HOH 688 A HOH 12 4 HOH HOH 689 A HOH 136 4 HOH HOH 690 A HOH 11 4 HOH HOH 691 A HOH 161 4 HOH HOH 692 A HOH 88 4 HOH HOH 693 A HOH 168 4 HOH HOH 694 A HOH 61 4 HOH HOH 695 A HOH 151 4 HOH HOH 696 A HOH 84 4 HOH HOH 697 A HOH 78 4 HOH HOH 698 A HOH 112 4 HOH HOH 699 A HOH 24 4 HOH HOH 700 A HOH 65 4 HOH HOH 701 A HOH 81 4 HOH HOH 702 A HOH 119 4 HOH HOH 703 A HOH 104 4 HOH HOH 704 A HOH 23 4 HOH HOH 705 A HOH 32 4 HOH HOH 706 A HOH 52 4 HOH HOH 707 A HOH 94 4 HOH HOH 708 A HOH 64 4 HOH HOH 709 A HOH 59 4 HOH HOH 710 A HOH 45 4 HOH HOH 711 A HOH 115 4 HOH HOH 712 A HOH 30 4 HOH HOH 713 A HOH 29 4 HOH HOH 714 A HOH 41 4 HOH HOH 715 A HOH 44 4 HOH HOH 716 A HOH 172 4 HOH HOH 717 A HOH 19 4 HOH HOH 718 A HOH 55 4 HOH HOH 719 A HOH 152 4 HOH HOH 720 A HOH 184 4 HOH HOH 721 A HOH 171 4 HOH HOH 722 A HOH 7 4 HOH HOH 723 A HOH 37 4 HOH HOH 724 A HOH 92 4 HOH HOH 725 A HOH 148 4 HOH HOH 726 A HOH 181 4 HOH HOH 727 A HOH 180 4 HOH HOH 728 A HOH 95 4 HOH HOH 729 A HOH 16 4 HOH HOH 730 A HOH 17 4 HOH HOH 731 A HOH 2 4 HOH HOH 732 A HOH 144 4 HOH HOH 733 A HOH 178 4 HOH HOH 734 A HOH 170 4 HOH HOH 735 A HOH 155 4 HOH HOH 736 A HOH 114 4 HOH HOH 737 A HOH 177 4 HOH HOH 738 A HOH 91 4 HOH HOH 739 A HOH 113 4 HOH HOH 740 A HOH 1 4 HOH HOH 741 A HOH 173 4 HOH HOH 742 A HOH 117 4 HOH HOH 743 A HOH 100 4 HOH HOH 744 A HOH 162 4 HOH HOH 745 A HOH 82 4 HOH HOH 746 A HOH 146 4 HOH HOH 747 A HOH 107 4 HOH HOH 748 A HOH 48 4 HOH HOH 749 A HOH 89 4 HOH HOH 750 A HOH 141 4 HOH HOH 751 A HOH 109 4 HOH HOH 752 A HOH 93 4 HOH HOH 753 A HOH 69 4 HOH HOH 754 A HOH 99 4 HOH HOH 755 A HOH 98 4 HOH HOH 756 A HOH 36 4 HOH HOH 757 A HOH 169 4 HOH HOH 758 A HOH 57 4 HOH HOH 759 A HOH 154 4 HOH HOH 760 A HOH 105 4 HOH HOH 761 A HOH 35 4 HOH HOH 762 A HOH 182 4 HOH HOH 763 A HOH 137 4 HOH HOH 764 A HOH 101 4 HOH HOH 765 A HOH 123 4 HOH HOH 766 A HOH 135 4 HOH HOH 767 A HOH 103 4 HOH HOH 768 A HOH 147 4 HOH HOH 769 A HOH 126 4 HOH HOH 770 A HOH 139 4 HOH HOH 771 A HOH 159 4 HOH HOH 772 A HOH 34 4 HOH HOH 773 A HOH 153 4 HOH HOH 774 A HOH 97 4 HOH HOH 775 A HOH 108 4 HOH HOH 776 A HOH 53 4 HOH HOH 777 A HOH 142 4 HOH HOH 778 A HOH 124 4 HOH HOH 779 A HOH 87 4 HOH HOH 780 A HOH 183 4 HOH HOH 781 A HOH 96 4 HOH HOH 782 A HOH 50 4 HOH HOH 701 B HOH 116 4 HOH HOH 702 B HOH 163 4 HOH HOH 703 B HOH 187 4 HOH HOH 704 B HOH 131 4 HOH HOH 705 B 2.290 2.290 41.220 41.220 n 1 191 A n 2 192 A n 3 193 A n 4 194 A n 5 195 A n 6 196 A n 7 197 A n 8 198 A n 9 199 A n 10 200 A n 11 201 A n 12 202 A n 13 203 A n 14 204 A n 15 205 A n 16 206 A n 17 207 A SER 208 n 18 SER 208 A ALA 209 n 19 ALA 209 A ASP 210 n 20 ASP 210 A LEU 211 n 21 LEU 211 A ARG 212 n 22 ARG 212 A ALA 213 n 23 ALA 213 A LEU 214 n 24 LEU 214 A ALA 215 n 25 ALA 215 A LYS 216 n 26 LYS 216 A HIS 217 n 27 HIS 217 A LEU 218 n 28 LEU 218 A TYR 219 n 29 TYR 219 A ASP 220 n 30 ASP 220 A SER 221 n 31 SER 221 A TYR 222 n 32 TYR 222 A ILE 223 n 33 ILE 223 A LYS 224 n 34 LYS 224 A SER 225 n 35 SER 225 A PHE 226 n 36 PHE 226 A PRO 227 n 37 PRO 227 A LEU 228 n 38 LEU 228 A THR 229 n 39 THR 229 A LYS 230 n 40 LYS 230 A ALA 231 n 41 ALA 231 A LYS 232 n 42 LYS 232 A ALA 233 n 43 ALA 233 A ARG 234 n 44 ARG 234 A ALA 235 n 45 ALA 235 A ILE 236 n 46 ILE 236 A LEU 237 n 47 LEU 237 A THR 238 n 48 THR 238 A GLY 239 n 49 GLY 239 A LYS 240 n 50 LYS 240 A THR 241 n 51 THR 241 A n 52 242 A ASP 243 n 53 ASP 243 A LYS 244 n 54 LYS 244 A SER 245 n 55 SER 245 A PRO 246 n 56 PRO 246 A PHE 247 n 57 PHE 247 A VAL 248 n 58 VAL 248 A ILE 249 n 59 ILE 249 A TYR 250 n 60 TYR 250 A ASP 251 n 61 ASP 251 A MET 252 n 62 MET 252 A ASN 253 n 63 ASN 253 A SER 254 n 64 SER 254 A LEU 255 n 65 LEU 255 A MET 256 n 66 MET 256 A MET 257 n 67 MET 257 A GLY 258 n 68 GLY 258 A GLU 259 n 69 GLU 259 A ASP 260 n 70 ASP 260 A LYS 261 n 71 LYS 261 A n 72 262 A n 73 263 A n 74 264 A n 75 265 A n 76 266 A n 77 267 A n 78 268 A n 79 269 A n 80 270 A n 81 271 A n 82 272 A n 83 273 A n 84 274 A LYS 275 n 85 LYS 275 A GLU 276 n 86 GLU 276 A VAL 277 n 87 VAL 277 A ALA 278 n 88 ALA 278 A ILE 279 n 89 ILE 279 A ARG 280 n 90 ARG 280 A ILE 281 n 91 ILE 281 A PHE 282 n 92 PHE 282 A GLN 283 n 93 GLN 283 A GLY 284 n 94 GLY 284 A CYS 285 n 95 CYS 285 A GLN 286 n 96 GLN 286 A PHE 287 n 97 PHE 287 A ARG 288 n 98 ARG 288 A SER 289 n 99 SER 289 A VAL 290 n 100 VAL 290 A GLU 291 n 101 GLU 291 A ALA 292 n 102 ALA 292 A VAL 293 n 103 VAL 293 A GLN 294 n 104 GLN 294 A GLU 295 n 105 GLU 295 A ILE 296 n 106 ILE 296 A THR 297 n 107 THR 297 A GLU 298 n 108 GLU 298 A TYR 299 n 109 TYR 299 A ALA 300 n 110 ALA 300 A LYS 301 n 111 LYS 301 A SER 302 n 112 SER 302 A ILE 303 n 113 ILE 303 A PRO 304 n 114 PRO 304 A GLY 305 n 115 GLY 305 A PHE 306 n 116 PHE 306 A VAL 307 n 117 VAL 307 A ASN 308 n 118 ASN 308 A LEU 309 n 119 LEU 309 A ASP 310 n 120 ASP 310 A LEU 311 n 121 LEU 311 A ASN 312 n 122 ASN 312 A ASP 313 n 123 ASP 313 A GLN 314 n 124 GLN 314 A VAL 315 n 125 VAL 315 A THR 316 n 126 THR 316 A LEU 317 n 127 LEU 317 A LEU 318 n 128 LEU 318 A LYS 319 n 129 LYS 319 A TYR 320 n 130 TYR 320 A GLY 321 n 131 GLY 321 A VAL 322 n 132 VAL 322 A HIS 323 n 133 HIS 323 A GLU 324 n 134 GLU 324 A ILE 325 n 135 ILE 325 A ILE 326 n 136 ILE 326 A TYR 327 n 137 TYR 327 A THR 328 n 138 THR 328 A MET 329 n 139 MET 329 A LEU 330 n 140 LEU 330 A ALA 331 n 141 ALA 331 A SER 332 n 142 SER 332 A LEU 333 n 143 LEU 333 A MET 334 n 144 MET 334 A ASN 335 n 145 ASN 335 A LYS 336 n 146 LYS 336 A ASP 337 n 147 ASP 337 A GLY 338 n 148 GLY 338 A VAL 339 n 149 VAL 339 A LEU 340 n 150 LEU 340 A ILE 341 n 151 ILE 341 A SER 342 n 152 SER 342 A GLU 343 n 153 GLU 343 A GLY 344 n 154 GLY 344 A GLN 345 n 155 GLN 345 A GLY 346 n 156 GLY 346 A PHE 347 n 157 PHE 347 A MET 348 n 158 MET 348 A THR 349 n 159 THR 349 A ARG 350 n 160 ARG 350 A GLU 351 n 161 GLU 351 A PHE 352 n 162 PHE 352 A LEU 353 n 163 LEU 353 A LYS 354 n 164 LYS 354 A SER 355 n 165 SER 355 A LEU 356 n 166 LEU 356 A ARG 357 n 167 ARG 357 A LYS 358 n 168 LYS 358 A PRO 359 n 169 PRO 359 A PHE 360 n 170 PHE 360 A GLY 361 n 171 GLY 361 A ASP 362 n 172 ASP 362 A PHE 363 n 173 PHE 363 A MET 364 n 174 MET 364 A GLU 365 n 175 GLU 365 A PRO 366 n 176 PRO 366 A LYS 367 n 177 LYS 367 A PHE 368 n 178 PHE 368 A GLU 369 n 179 GLU 369 A PHE 370 n 180 PHE 370 A ALA 371 n 181 ALA 371 A VAL 372 n 182 VAL 372 A LYS 373 n 183 LYS 373 A PHE 374 n 184 PHE 374 A ASN 375 n 185 ASN 375 A ALA 376 n 186 ALA 376 A LEU 377 n 187 LEU 377 A GLU 378 n 188 GLU 378 A LEU 379 n 189 LEU 379 A ASP 380 n 190 ASP 380 A ASP 381 n 191 ASP 381 A SER 382 n 192 SER 382 A ASP 383 n 193 ASP 383 A LEU 384 n 194 LEU 384 A ALA 385 n 195 ALA 385 A ILE 386 n 196 ILE 386 A PHE 387 n 197 PHE 387 A ILE 388 n 198 ILE 388 A ALA 389 n 199 ALA 389 A VAL 390 n 200 VAL 390 A ILE 391 n 201 ILE 391 A ILE 392 n 202 ILE 392 A LEU 393 n 203 LEU 393 A SER 394 n 204 SER 394 A GLY 395 n 205 GLY 395 A ASP 396 n 206 ASP 396 A ARG 397 n 207 ARG 397 A PRO 398 n 208 PRO 398 A GLY 399 n 209 GLY 399 A LEU 400 n 210 LEU 400 A LEU 401 n 211 LEU 401 A ASN 402 n 212 ASN 402 A VAL 403 n 213 VAL 403 A LYS 404 n 214 LYS 404 A PRO 405 n 215 PRO 405 A ILE 406 n 216 ILE 406 A GLU 407 n 217 GLU 407 A ASP 408 n 218 ASP 408 A ILE 409 n 219 ILE 409 A GLN 410 n 220 GLN 410 A ASP 411 n 221 ASP 411 A ASN 412 n 222 ASN 412 A LEU 413 n 223 LEU 413 A LEU 414 n 224 LEU 414 A GLN 415 n 225 GLN 415 A ALA 416 n 226 ALA 416 A LEU 417 n 227 LEU 417 A GLU 418 n 228 GLU 418 A LEU 419 n 229 LEU 419 A GLN 420 n 230 GLN 420 A LEU 421 n 231 LEU 421 A LYS 422 n 232 LYS 422 A LEU 423 n 233 LEU 423 A ASN 424 n 234 ASN 424 A HIS 425 n 235 HIS 425 A PRO 426 n 236 PRO 426 A GLU 427 n 237 GLU 427 A SER 428 n 238 SER 428 A SER 429 n 239 SER 429 A GLN 430 n 240 GLN 430 A LEU 431 n 241 LEU 431 A PHE 432 n 242 PHE 432 A ALA 433 n 243 ALA 433 A LYS 434 n 244 LYS 434 A LEU 435 n 245 LEU 435 A LEU 436 n 246 LEU 436 A GLN 437 n 247 GLN 437 A LYS 438 n 248 LYS 438 A MET 439 n 249 MET 439 A THR 440 n 250 THR 440 A ASP 441 n 251 ASP 441 A LEU 442 n 252 LEU 442 A ARG 443 n 253 ARG 443 A GLN 444 n 254 GLN 444 A ILE 445 n 255 ILE 445 A VAL 446 n 256 VAL 446 A THR 447 n 257 THR 447 A GLU 448 n 258 GLU 448 A HIS 449 n 259 HIS 449 A VAL 450 n 260 VAL 450 A GLN 451 n 261 GLN 451 A LEU 452 n 262 LEU 452 A LEU 453 n 263 LEU 453 A GLN 454 n 264 GLN 454 A VAL 455 n 265 VAL 455 A ILE 456 n 266 ILE 456 A LYS 457 n 267 LYS 457 A LYS 458 n 268 LYS 458 A THR 459 n 269 THR 459 A GLU 460 n 270 GLU 460 A THR 461 n 271 THR 461 A ASP 462 n 272 ASP 462 A MET 463 n 273 MET 463 A SER 464 n 274 SER 464 A LEU 465 n 275 LEU 465 A HIS 466 n 276 HIS 466 A PRO 467 n 277 PRO 467 A LEU 468 n 278 LEU 468 A LEU 469 n 279 LEU 469 A GLN 470 n 280 GLN 470 A GLU 471 n 281 GLU 471 A ILE 472 n 282 ILE 472 A TYR 473 n 283 TYR 473 A LYS 474 n 284 LYS 474 A ASP 475 n 285 ASP 475 A LEU 476 n 286 LEU 476 A n 287 477 A PRO 603 n 1 PRO 603 B SER 604 n 2 SER 604 B LEU 605 n 3 LEU 605 B LEU 606 n 4 LEU 606 B LYS 607 n 5 LYS 607 B LYS 608 n 6 LYS 608 B LEU 609 n 7 LEU 609 B LEU 610 n 8 LEU 610 B LEU 611 n 9 LEU 611 B ALA 612 n 10 ALA 612 B n 11 613 B n 12 614 B author_and_software_defined_assembly PISA 2 dimeric none 1010 -8 13020 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 249 A N ILE 59 A O PHE 347 A O PHE 157 A O MET 348 A O MET 158 A N VAL 339 A N VAL 149 A O GLY 338 A O GLY 148 A N ASN 335 A N ASN 145 1 A GLY 191 A GLY 1 1 Y 1 A SER 192 A SER 2 1 Y 1 A HIS 193 A HIS 3 1 Y 1 A MET 194 A MET 4 1 Y 1 A ALA 195 A ALA 5 1 Y 1 A GLU 196 A GLU 6 1 Y 1 A ILE 197 A ILE 7 1 Y 1 A SER 198 A SER 8 1 Y 1 A SER 199 A SER 9 1 Y 1 A ASP 200 A ASP 10 1 Y 1 A ILE 201 A ILE 11 1 Y 1 A ASP 202 A ASP 12 1 Y 1 A GLN 203 A GLN 13 1 Y 1 A LEU 204 A LEU 14 1 Y 1 A ASN 205 A ASN 15 1 Y 1 A PRO 206 A PRO 16 1 Y 1 A GLU 207 A GLU 17 1 Y 1 A THR 242 A THR 52 1 Y 1 A ILE 262 A ILE 72 1 Y 1 A LYS 263 A LYS 73 1 Y 1 A PHE 264 A PHE 74 1 Y 1 A LYS 265 A LYS 75 1 Y 1 A HIS 266 A HIS 76 1 Y 1 A ILE 267 A ILE 77 1 Y 1 A THR 268 A THR 78 1 Y 1 A PRO 269 A PRO 79 1 Y 1 A LEU 270 A LEU 80 1 Y 1 A GLN 271 A GLN 81 1 Y 1 A GLU 272 A GLU 82 1 Y 1 A GLN 273 A GLN 83 1 Y 1 A SER 274 A SER 84 1 Y 1 A TYR 477 A TYR 287 1 Y 1 B PRO 613 B PRO 11 1 Y 1 B ALA 614 B ALA 12 1 Y 1 A LYS 240 -114.69 67.85 1 A SER 342 30.80 79.17 1 A LEU 393 -89.57 48.00 1 A GLU 460 -102.13 66.31 1 A ASP 462 -119.11 56.54 1 A ASP 475 82.81 -1.55 27.867 -0.68 0.00 -0.60 0.33 -0.00 0.61 0.949 0.912 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23990 0.18451 0.18740 2.20 50.00 762 14420 5.0 99.70 7.220 0.176 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.281 0.217 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.20 50.00 187 2341 37 0 2117 0.014 0.019 2191 0.002 0.020 2204 1.720 2.019 2951 1.027 3.000 5082 5.898 5.000 261 35.225 25.385 91 15.928 15.000 425 15.942 15.000 8 0.107 0.200 340 0.007 0.020 2378 0.002 0.020 457 2.094 2.550 1056 2.083 2.549 1055 3.273 3.797 1313 3.276 3.798 1314 2.745 2.912 1135 2.744 2.912 1136 4.412 4.214 1639 6.294 20.749 2688 6.293 20.751 2689 0.271 0.266 2.258 51 1062 20 99.55 2.200 50.000 6AD9 15196 0.170 1.188 1 4.500 55697 3.700 99.800 0.614 2.200 2.280 1504 1.041 1 3.700 100.000 0.528 2.280 2.370 1505 1.041 1 3.700 99.800 0.482 2.370 2.480 1525 1.109 1 3.700 99.700 0.411 2.480 2.610 1501 1.128 1 3.700 99.700 0.311 2.610 2.770 1518 1.118 1 3.700 99.900 0.240 2.770 2.990 1496 1.126 1 3.700 99.900 0.175 2.990 3.290 1518 1.222 1 3.700 99.800 0.112 3.290 3.760 1528 1.330 1 3.700 99.900 0.092 3.760 4.740 1538 1.445 1 3.600 99.900 0.079 4.740 50.000 1563 1.318 1 3.500 99.000 refinement REFMAC 5.8.0135 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ HKL-2000 package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ HKL-2000 package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program 10.2.12 data extraction PDB deposit@deposit.rcsb.org Sep. 1, 2017 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.24 N Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-9 1 N N 2 N N 3 N N 4 N N 4 N N A SER 208 A SER 18 HELX_P A PHE 226 A PHE 36 1 AA1 19 A THR 229 A THR 39 HELX_P A THR 238 A THR 48 1 AA2 10 A ASP 251 A ASP 61 HELX_P A GLY 258 A GLY 68 1 AA3 8 A GLU 276 A GLU 86 HELX_P A GLY 284 A GLY 94 1 AA4 9 A CYS 285 A CYS 95 HELX_P A SER 302 A SER 112 1 AA5 18 A ASP 310 A ASP 120 HELX_P A LEU 333 A LEU 143 1 AA6 24 A ARG 350 A ARG 160 HELX_P A SER 355 A SER 165 1 AA7 6 A PRO 359 A PRO 169 HELX_P A MET 364 A MET 174 1 AA8 6 A MET 364 A MET 174 HELX_P A LEU 377 A LEU 187 1 AA9 14 A ASP 380 A ASP 190 HELX_P A LEU 393 A LEU 203 1 AB1 14 A ASN 402 A ASN 212 HELX_P A HIS 425 A HIS 235 1 AB2 24 A GLN 430 A GLN 240 HELX_P A LYS 458 A LYS 268 1 AB3 29 A HIS 466 A HIS 276 HELX_P A LYS 474 A LYS 284 1 AB4 9 B SER 604 B SER 2 HELX_P B ALA 612 B ALA 10 1 AB5 9 NUCLEAR PROTEIN PPARgamma Ligand Binding Domain Agonist, NUCLEAR PROTEIN A LYS 358 A LYS 168 1 A PRO 359 A PRO 169 5.43 PPARG_HUMAN UNP 1 223 P37231 AEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQS KEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLK SLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAK LLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY PRGC1_HUMAN UNP 2 141 Q9UBK2 PSLLKKLLLAPA 223 505 6AD9 195 477 P37231 A 1 5 287 141 152 6AD9 603 614 Q9UBK2 B 2 1 12 1 expression tag GLY 191 6AD9 A P37231 UNP 1 1 expression tag SER 192 6AD9 A P37231 UNP 2 1 expression tag HIS 193 6AD9 A P37231 UNP 3 1 expression tag MET 194 6AD9 A P37231 UNP 4 4 parallel anti-parallel anti-parallel A PHE 247 A PHE 57 A ILE 249 A ILE 59 A GLY 346 A GLY 156 A THR 349 A THR 159 A GLY 338 A GLY 148 A ILE 341 A ILE 151 A MET 334 A MET 144 A ASN 335 A ASN 145 binding site for residue KK4 A 501 A KK4 501 Software 12 A PHE 282 A PHE 92 12 1_555 A GLN 283 A GLN 93 12 1_555 A CYS 285 A CYS 95 12 1_555 A GLN 286 A GLN 96 12 1_555 A SER 289 A SER 99 12 1_555 A HIS 323 A HIS 133 12 1_555 A TYR 327 A TYR 137 12 1_555 A ILE 341 A ILE 151 12 1_555 A PHE 363 A PHE 173 12 1_555 A MET 364 A MET 174 12 1_555 A HIS 449 A HIS 259 12 1_555 A TYR 473 A TYR 283 12 1_555 4 P 1 21 1