0.018680
0.000000
0.000782
0.000000
0.014591
0.000000
0.000000
0.000000
0.017595
0.000000
0.000000
0.000000
Fang, J.
Lu, G.
0000-0002-8264-7523
Gong, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
92.400
90.000
53.532
68.534
56.883
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
S
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
S
N
338
N
O
N
339
N
O
N
340
N
O
N
341
N
O
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
R
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
N
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
US
ACS Infect Dis
2373-8227
5
177
183
10.1021/acsinfecdis.8b00214
30672289
Crystallographic Snapshots of the Zika Virus NS3 Helicase Help Visualize the Reactant Water Replenishment.
2019
0000-0002-8264-7523
10.2210/pdb6adw/pdb
pdb_00006adw
100
1
CCD
2016-04-03
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.9791
1.0
BL17U1
SSRF
0.9791
SYNCHROTRON
SSRF BEAMLINE BL17U1
50412.555
Serine protease NS3
3.4.21.91, 3.6.1.15, 3.6.4.13
1
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
181
nat
water
no
no
MHHHHHHSSSGPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVN
VTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDS
NSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITT
DISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDEGHAHWLE
ARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNN
TIMEDSVPAEVWTKYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
MHHHHHHSSSGPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVN
VTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDS
NSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITT
DISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDEGHAHWLE
ARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNN
TIMEDSVPAEVWTKYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZIKV
Mr 766
sample
1
448
64320
Zika virus (strain Mr 766)
562
Escherichia coli
BL21(DE3) RIL
plasmid
Biological sequence
pET26b
1
2.07
40.52
VAPOR DIFFUSION, SITTING DROP
7.5
PEG3350, lithium sulfate
289
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2019-03-13
1
1
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
China
Natural Science Foundation of Guangdong Province of China
2016A030310249
N
PDBJ
Y
PDBJ
2018-08-02
REL
REL
SO4
SULFATE ION
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
2VBC
PDB
experimental model
SO4
1
2
SO4
SO4
701
A
SO4
5
2
SO4
SO4
702
A
SO4
6
2
SO4
SO4
703
A
EPE
1
3
EPE
EPE
704
A
HOH
103
4
HOH
HOH
801
A
HOH
100
4
HOH
HOH
802
A
HOH
45
4
HOH
HOH
803
A
HOH
23
4
HOH
HOH
804
A
HOH
20
4
HOH
HOH
805
A
HOH
158
4
HOH
HOH
806
A
HOH
151
4
HOH
HOH
807
A
HOH
157
4
HOH
HOH
808
A
HOH
62
4
HOH
HOH
809
A
HOH
138
4
HOH
HOH
810
A
HOH
16
4
HOH
HOH
811
A
HOH
185
4
HOH
HOH
812
A
HOH
189
4
HOH
HOH
813
A
HOH
84
4
HOH
HOH
814
A
HOH
139
4
HOH
HOH
815
A
HOH
17
4
HOH
HOH
816
A
HOH
107
4
HOH
HOH
817
A
HOH
69
4
HOH
HOH
818
A
HOH
87
4
HOH
HOH
819
A
HOH
83
4
HOH
HOH
820
A
HOH
5
4
HOH
HOH
821
A
HOH
1
4
HOH
HOH
822
A
HOH
130
4
HOH
HOH
823
A
HOH
33
4
HOH
HOH
824
A
HOH
120
4
HOH
HOH
825
A
HOH
46
4
HOH
HOH
826
A
HOH
143
4
HOH
HOH
827
A
HOH
25
4
HOH
HOH
828
A
HOH
90
4
HOH
HOH
829
A
HOH
115
4
HOH
HOH
830
A
HOH
81
4
HOH
HOH
831
A
HOH
88
4
HOH
HOH
832
A
HOH
150
4
HOH
HOH
833
A
HOH
126
4
HOH
HOH
834
A
HOH
31
4
HOH
HOH
835
A
HOH
39
4
HOH
HOH
836
A
HOH
56
4
HOH
HOH
837
A
HOH
96
4
HOH
HOH
838
A
HOH
162
4
HOH
HOH
839
A
HOH
76
4
HOH
HOH
840
A
HOH
55
4
HOH
HOH
841
A
HOH
27
4
HOH
HOH
842
A
HOH
24
4
HOH
HOH
843
A
HOH
21
4
HOH
HOH
844
A
HOH
3
4
HOH
HOH
845
A
HOH
122
4
HOH
HOH
846
A
HOH
78
4
HOH
HOH
847
A
HOH
41
4
HOH
HOH
848
A
HOH
59
4
HOH
HOH
849
A
HOH
80
4
HOH
HOH
850
A
HOH
38
4
HOH
HOH
851
A
HOH
144
4
HOH
HOH
852
A
HOH
119
4
HOH
HOH
853
A
HOH
2
4
HOH
HOH
854
A
HOH
60
4
HOH
HOH
855
A
HOH
97
4
HOH
HOH
856
A
HOH
168
4
HOH
HOH
857
A
HOH
15
4
HOH
HOH
858
A
HOH
26
4
HOH
HOH
859
A
HOH
13
4
HOH
HOH
860
A
HOH
166
4
HOH
HOH
861
A
HOH
117
4
HOH
HOH
862
A
HOH
131
4
HOH
HOH
863
A
HOH
77
4
HOH
HOH
864
A
HOH
35
4
HOH
HOH
865
A
HOH
73
4
HOH
HOH
866
A
HOH
91
4
HOH
HOH
867
A
HOH
4
4
HOH
HOH
868
A
HOH
47
4
HOH
HOH
869
A
HOH
44
4
HOH
HOH
870
A
HOH
124
4
HOH
HOH
871
A
HOH
95
4
HOH
HOH
872
A
HOH
63
4
HOH
HOH
873
A
HOH
102
4
HOH
HOH
874
A
HOH
9
4
HOH
HOH
875
A
HOH
48
4
HOH
HOH
876
A
HOH
8
4
HOH
HOH
877
A
HOH
193
4
HOH
HOH
878
A
HOH
52
4
HOH
HOH
879
A
HOH
174
4
HOH
HOH
880
A
HOH
127
4
HOH
HOH
881
A
HOH
195
4
HOH
HOH
882
A
HOH
187
4
HOH
HOH
883
A
HOH
135
4
HOH
HOH
884
A
HOH
40
4
HOH
HOH
885
A
HOH
154
4
HOH
HOH
886
A
HOH
22
4
HOH
HOH
887
A
HOH
53
4
HOH
HOH
888
A
HOH
30
4
HOH
HOH
889
A
HOH
99
4
HOH
HOH
890
A
HOH
118
4
HOH
HOH
891
A
HOH
34
4
HOH
HOH
892
A
HOH
89
4
HOH
HOH
893
A
HOH
29
4
HOH
HOH
894
A
HOH
153
4
HOH
HOH
895
A
HOH
141
4
HOH
HOH
896
A
HOH
36
4
HOH
HOH
897
A
HOH
37
4
HOH
HOH
898
A
HOH
42
4
HOH
HOH
899
A
HOH
142
4
HOH
HOH
900
A
HOH
123
4
HOH
HOH
901
A
HOH
140
4
HOH
HOH
902
A
HOH
164
4
HOH
HOH
903
A
HOH
11
4
HOH
HOH
904
A
HOH
175
4
HOH
HOH
905
A
HOH
19
4
HOH
HOH
906
A
HOH
111
4
HOH
HOH
907
A
HOH
133
4
HOH
HOH
908
A
HOH
49
4
HOH
HOH
909
A
HOH
66
4
HOH
HOH
910
A
HOH
149
4
HOH
HOH
911
A
HOH
101
4
HOH
HOH
912
A
HOH
104
4
HOH
HOH
913
A
HOH
6
4
HOH
HOH
914
A
HOH
28
4
HOH
HOH
915
A
HOH
79
4
HOH
HOH
916
A
HOH
58
4
HOH
HOH
917
A
HOH
112
4
HOH
HOH
918
A
HOH
197
4
HOH
HOH
919
A
HOH
159
4
HOH
HOH
920
A
HOH
125
4
HOH
HOH
921
A
HOH
93
4
HOH
HOH
922
A
HOH
171
4
HOH
HOH
923
A
HOH
18
4
HOH
HOH
924
A
HOH
145
4
HOH
HOH
925
A
HOH
12
4
HOH
HOH
926
A
HOH
51
4
HOH
HOH
927
A
HOH
70
4
HOH
HOH
928
A
HOH
173
4
HOH
HOH
929
A
HOH
54
4
HOH
HOH
930
A
HOH
82
4
HOH
HOH
931
A
HOH
199
4
HOH
HOH
932
A
HOH
14
4
HOH
HOH
933
A
HOH
106
4
HOH
HOH
934
A
HOH
74
4
HOH
HOH
935
A
HOH
148
4
HOH
HOH
936
A
HOH
147
4
HOH
HOH
937
A
HOH
116
4
HOH
HOH
938
A
HOH
156
4
HOH
HOH
939
A
HOH
184
4
HOH
HOH
940
A
HOH
71
4
HOH
HOH
941
A
HOH
165
4
HOH
HOH
942
A
HOH
161
4
HOH
HOH
943
A
HOH
67
4
HOH
HOH
944
A
HOH
7
4
HOH
HOH
945
A
HOH
108
4
HOH
HOH
946
A
HOH
188
4
HOH
HOH
947
A
HOH
128
4
HOH
HOH
948
A
HOH
186
4
HOH
HOH
949
A
HOH
92
4
HOH
HOH
950
A
HOH
10
4
HOH
HOH
951
A
HOH
114
4
HOH
HOH
952
A
HOH
137
4
HOH
HOH
953
A
HOH
155
4
HOH
HOH
954
A
HOH
182
4
HOH
HOH
955
A
HOH
180
4
HOH
HOH
956
A
HOH
191
4
HOH
HOH
957
A
HOH
172
4
HOH
HOH
958
A
HOH
176
4
HOH
HOH
959
A
HOH
75
4
HOH
HOH
960
A
HOH
121
4
HOH
HOH
961
A
HOH
105
4
HOH
HOH
962
A
HOH
50
4
HOH
HOH
963
A
HOH
146
4
HOH
HOH
964
A
HOH
179
4
HOH
HOH
965
A
HOH
167
4
HOH
HOH
966
A
HOH
169
4
HOH
HOH
967
A
HOH
109
4
HOH
HOH
968
A
HOH
177
4
HOH
HOH
969
A
HOH
113
4
HOH
HOH
970
A
HOH
196
4
HOH
HOH
971
A
HOH
98
4
HOH
HOH
972
A
HOH
43
4
HOH
HOH
973
A
HOH
94
4
HOH
HOH
974
A
HOH
194
4
HOH
HOH
975
A
HOH
65
4
HOH
HOH
976
A
HOH
198
4
HOH
HOH
977
A
HOH
178
4
HOH
HOH
978
A
HOH
192
4
HOH
HOH
979
A
HOH
64
4
HOH
HOH
980
A
HOH
152
4
HOH
HOH
981
A
n
1
170
A
n
2
171
A
n
3
172
A
n
4
173
A
n
5
174
A
n
6
175
A
n
7
176
A
n
8
177
A
n
9
178
A
n
10
179
A
n
11
180
A
n
12
181
A
n
13
182
A
MET
183
n
14
MET
183
A
LEU
184
n
15
LEU
184
A
LYS
185
n
16
LYS
185
A
LYS
186
n
17
LYS
186
A
LYS
187
n
18
LYS
187
A
GLN
188
n
19
GLN
188
A
LEU
189
n
20
LEU
189
A
THR
190
n
21
THR
190
A
VAL
191
n
22
VAL
191
A
LEU
192
n
23
LEU
192
A
ASP
193
n
24
ASP
193
A
LEU
194
n
25
LEU
194
A
HIS
195
n
26
HIS
195
A
PRO
196
n
27
PRO
196
A
GLY
197
n
28
GLY
197
A
ALA
198
n
29
ALA
198
A
GLY
199
n
30
GLY
199
A
LYS
200
n
31
LYS
200
A
THR
201
n
32
THR
201
A
ARG
202
n
33
ARG
202
A
ARG
203
n
34
ARG
203
A
VAL
204
n
35
VAL
204
A
LEU
205
n
36
LEU
205
A
PRO
206
n
37
PRO
206
A
GLU
207
n
38
GLU
207
A
ILE
208
n
39
ILE
208
A
VAL
209
n
40
VAL
209
A
ARG
210
n
41
ARG
210
A
GLU
211
n
42
GLU
211
A
ALA
212
n
43
ALA
212
A
ILE
213
n
44
ILE
213
A
LYS
214
n
45
LYS
214
A
LYS
215
n
46
LYS
215
A
ARG
216
n
47
ARG
216
A
LEU
217
n
48
LEU
217
A
ARG
218
n
49
ARG
218
A
THR
219
n
50
THR
219
A
VAL
220
n
51
VAL
220
A
ILE
221
n
52
ILE
221
A
LEU
222
n
53
LEU
222
A
ALA
223
n
54
ALA
223
A
PRO
224
n
55
PRO
224
A
THR
225
n
56
THR
225
A
ARG
226
n
57
ARG
226
A
VAL
227
n
58
VAL
227
A
VAL
228
n
59
VAL
228
A
ALA
229
n
60
ALA
229
A
ALA
230
n
61
ALA
230
A
GLU
231
n
62
GLU
231
A
MET
232
n
63
MET
232
A
GLU
233
n
64
GLU
233
A
GLU
234
n
65
GLU
234
A
ALA
235
n
66
ALA
235
A
LEU
236
n
67
LEU
236
A
ARG
237
n
68
ARG
237
A
GLY
238
n
69
GLY
238
A
LEU
239
n
70
LEU
239
A
PRO
240
n
71
PRO
240
A
VAL
241
n
72
VAL
241
A
ARG
242
n
73
ARG
242
A
TYR
243
n
74
TYR
243
A
MET
244
n
75
MET
244
A
THR
245
n
76
THR
245
A
THR
246
n
77
THR
246
A
ALA
247
n
78
ALA
247
A
VAL
248
n
79
VAL
248
A
ASN
249
n
80
ASN
249
A
VAL
250
n
81
VAL
250
A
n
82
251
A
HIS
252
n
83
HIS
252
A
SER
253
n
84
SER
253
A
GLY
254
n
85
GLY
254
A
THR
255
n
86
THR
255
A
GLU
256
n
87
GLU
256
A
ILE
257
n
88
ILE
257
A
VAL
258
n
89
VAL
258
A
ASP
259
n
90
ASP
259
A
LEU
260
n
91
LEU
260
A
MET
261
n
92
MET
261
A
CYS
262
n
93
CYS
262
A
HIS
263
n
94
HIS
263
A
ALA
264
n
95
ALA
264
A
THR
265
n
96
THR
265
A
PHE
266
n
97
PHE
266
A
THR
267
n
98
THR
267
A
SER
268
n
99
SER
268
A
ARG
269
n
100
ARG
269
A
LEU
270
n
101
LEU
270
A
LEU
271
n
102
LEU
271
A
GLN
272
n
103
GLN
272
A
PRO
273
n
104
PRO
273
A
ILE
274
n
105
ILE
274
A
ARG
275
n
106
ARG
275
A
VAL
276
n
107
VAL
276
A
PRO
277
n
108
PRO
277
A
ASN
278
n
109
ASN
278
A
TYR
279
n
110
TYR
279
A
ASN
280
n
111
ASN
280
A
LEU
281
n
112
LEU
281
A
ASN
282
n
113
ASN
282
A
ILE
283
n
114
ILE
283
A
MET
284
n
115
MET
284
A
ASP
285
n
116
ASP
285
A
GLU
286
n
117
GLU
286
A
ALA
287
n
118
ALA
287
A
HIS
288
n
119
HIS
288
A
PHE
289
n
120
PHE
289
A
THR
290
n
121
THR
290
A
ASP
291
n
122
ASP
291
A
PRO
292
n
123
PRO
292
A
SER
293
n
124
SER
293
A
SER
294
n
125
SER
294
A
ILE
295
n
126
ILE
295
A
ALA
296
n
127
ALA
296
A
ALA
297
n
128
ALA
297
A
ARG
298
n
129
ARG
298
A
GLY
299
n
130
GLY
299
A
TYR
300
n
131
TYR
300
A
ILE
301
n
132
ILE
301
A
SER
302
n
133
SER
302
A
THR
303
n
134
THR
303
A
ARG
304
n
135
ARG
304
A
VAL
305
n
136
VAL
305
A
GLU
306
n
137
GLU
306
A
MET
307
n
138
MET
307
A
GLY
308
n
139
GLY
308
A
GLU
309
n
140
GLU
309
A
ALA
310
n
141
ALA
310
A
ALA
311
n
142
ALA
311
A
ALA
312
n
143
ALA
312
A
ILE
313
n
144
ILE
313
A
PHE
314
n
145
PHE
314
A
MET
315
n
146
MET
315
A
THR
316
n
147
THR
316
A
ALA
317
n
148
ALA
317
A
THR
318
n
149
THR
318
A
PRO
319
n
150
PRO
319
A
PRO
320
n
151
PRO
320
A
GLY
321
n
152
GLY
321
A
THR
322
n
153
THR
322
A
ARG
323
n
154
ARG
323
A
ASP
324
n
155
ASP
324
A
ALA
325
n
156
ALA
325
A
PHE
326
n
157
PHE
326
A
PRO
327
n
158
PRO
327
A
ASP
328
n
159
ASP
328
A
SER
329
n
160
SER
329
A
ASN
330
n
161
ASN
330
A
SER
331
n
162
SER
331
A
PRO
332
n
163
PRO
332
A
ILE
333
n
164
ILE
333
A
MET
334
n
165
MET
334
A
ASP
335
n
166
ASP
335
A
THR
336
n
167
THR
336
A
GLU
337
n
168
GLU
337
A
VAL
338
n
169
VAL
338
A
GLU
339
n
170
GLU
339
A
VAL
340
n
171
VAL
340
A
PRO
341
n
172
PRO
341
A
GLU
342
n
173
GLU
342
A
ARG
343
n
174
ARG
343
A
ALA
344
n
175
ALA
344
A
TRP
345
n
176
TRP
345
A
SER
346
n
177
SER
346
A
SER
347
n
178
SER
347
A
GLY
348
n
179
GLY
348
A
PHE
349
n
180
PHE
349
A
ASP
350
n
181
ASP
350
A
TRP
351
n
182
TRP
351
A
VAL
352
n
183
VAL
352
A
THR
353
n
184
THR
353
A
ASP
354
n
185
ASP
354
A
HIS
355
n
186
HIS
355
A
SER
356
n
187
SER
356
A
GLY
357
n
188
GLY
357
A
LYS
358
n
189
LYS
358
A
THR
359
n
190
THR
359
A
VAL
360
n
191
VAL
360
A
TRP
361
n
192
TRP
361
A
PHE
362
n
193
PHE
362
A
VAL
363
n
194
VAL
363
A
PRO
364
n
195
PRO
364
A
SER
365
n
196
SER
365
A
VAL
366
n
197
VAL
366
A
ARG
367
n
198
ARG
367
A
ASN
368
n
199
ASN
368
A
GLY
369
n
200
GLY
369
A
ASN
370
n
201
ASN
370
A
GLU
371
n
202
GLU
371
A
ILE
372
n
203
ILE
372
A
ALA
373
n
204
ALA
373
A
ALA
374
n
205
ALA
374
A
CYS
375
n
206
CYS
375
A
LEU
376
n
207
LEU
376
A
THR
377
n
208
THR
377
A
LYS
378
n
209
LYS
378
A
ALA
379
n
210
ALA
379
A
GLY
380
n
211
GLY
380
A
LYS
381
n
212
LYS
381
A
ARG
382
n
213
ARG
382
A
VAL
383
n
214
VAL
383
A
ILE
384
n
215
ILE
384
A
GLN
385
n
216
GLN
385
A
LEU
386
n
217
LEU
386
A
SER
387
n
218
SER
387
A
ARG
388
n
219
ARG
388
A
LYS
389
n
220
LYS
389
A
THR
390
n
221
THR
390
A
PHE
391
n
222
PHE
391
A
GLU
392
n
223
GLU
392
A
THR
393
n
224
THR
393
A
GLU
394
n
225
GLU
394
A
PHE
395
n
226
PHE
395
A
GLN
396
n
227
GLN
396
A
LYS
397
n
228
LYS
397
A
THR
398
n
229
THR
398
A
LYS
399
n
230
LYS
399
A
ASN
400
n
231
ASN
400
A
GLN
401
n
232
GLN
401
A
GLU
402
n
233
GLU
402
A
TRP
403
n
234
TRP
403
A
ASP
404
n
235
ASP
404
A
PHE
405
n
236
PHE
405
A
VAL
406
n
237
VAL
406
A
ILE
407
n
238
ILE
407
A
THR
408
n
239
THR
408
A
THR
409
n
240
THR
409
A
ASP
410
n
241
ASP
410
A
ILE
411
n
242
ILE
411
A
SER
412
n
243
SER
412
A
GLU
413
n
244
GLU
413
A
MET
414
n
245
MET
414
A
GLY
415
n
246
GLY
415
A
ALA
416
n
247
ALA
416
A
ASN
417
n
248
ASN
417
A
PHE
418
n
249
PHE
418
A
LYS
419
n
250
LYS
419
A
ALA
420
n
251
ALA
420
A
ASP
421
n
252
ASP
421
A
ARG
422
n
253
ARG
422
A
VAL
423
n
254
VAL
423
A
ILE
424
n
255
ILE
424
A
ASP
425
n
256
ASP
425
A
SER
426
n
257
SER
426
A
ARG
427
n
258
ARG
427
A
ARG
428
n
259
ARG
428
A
CYS
429
n
260
CYS
429
A
LEU
430
n
261
LEU
430
A
LYS
431
n
262
LYS
431
A
PRO
432
n
263
PRO
432
A
VAL
433
n
264
VAL
433
A
ILE
434
n
265
ILE
434
A
LEU
435
n
266
LEU
435
A
ASP
436
n
267
ASP
436
A
GLY
437
n
268
GLY
437
A
GLU
438
n
269
GLU
438
A
ARG
439
n
270
ARG
439
A
VAL
440
n
271
VAL
440
A
ILE
441
n
272
ILE
441
A
LEU
442
n
273
LEU
442
A
ALA
443
n
274
ALA
443
A
GLY
444
n
275
GLY
444
A
PRO
445
n
276
PRO
445
A
MET
446
n
277
MET
446
A
PRO
447
n
278
PRO
447
A
VAL
448
n
279
VAL
448
A
THR
449
n
280
THR
449
A
HIS
450
n
281
HIS
450
A
ALA
451
n
282
ALA
451
A
SER
452
n
283
SER
452
A
ALA
453
n
284
ALA
453
A
ALA
454
n
285
ALA
454
A
GLN
455
n
286
GLN
455
A
ARG
456
n
287
ARG
456
A
ARG
457
n
288
ARG
457
A
GLY
458
n
289
GLY
458
A
ARG
459
n
290
ARG
459
A
ILE
460
n
291
ILE
460
A
GLY
461
n
292
GLY
461
A
ARG
462
n
293
ARG
462
A
ASN
463
n
294
ASN
463
A
PRO
464
n
295
PRO
464
A
ASN
465
n
296
ASN
465
A
LYS
466
n
297
LYS
466
A
PRO
467
n
298
PRO
467
A
GLY
468
n
299
GLY
468
A
ASP
469
n
300
ASP
469
A
GLU
470
n
301
GLU
470
A
TYR
471
n
302
TYR
471
A
MET
472
n
303
MET
472
A
TYR
473
n
304
TYR
473
A
GLY
474
n
305
GLY
474
A
GLY
475
n
306
GLY
475
A
GLY
476
n
307
GLY
476
A
CYS
477
n
308
CYS
477
A
ALA
478
n
309
ALA
478
A
GLU
479
n
310
GLU
479
A
THR
480
n
311
THR
480
A
ASP
481
n
312
ASP
481
A
GLU
482
n
313
GLU
482
A
GLY
483
n
314
GLY
483
A
HIS
484
n
315
HIS
484
A
ALA
485
n
316
ALA
485
A
HIS
486
n
317
HIS
486
A
TRP
487
n
318
TRP
487
A
LEU
488
n
319
LEU
488
A
GLU
489
n
320
GLU
489
A
ALA
490
n
321
ALA
490
A
ARG
491
n
322
ARG
491
A
MET
492
n
323
MET
492
A
LEU
493
n
324
LEU
493
A
LEU
494
n
325
LEU
494
A
ASP
495
n
326
ASP
495
A
ASN
496
n
327
ASN
496
A
ILE
497
n
328
ILE
497
A
TYR
498
n
329
TYR
498
A
LEU
499
n
330
LEU
499
A
GLN
500
n
331
GLN
500
A
ASP
501
n
332
ASP
501
A
GLY
502
n
333
GLY
502
A
LEU
503
n
334
LEU
503
A
ILE
504
n
335
ILE
504
A
ALA
505
n
336
ALA
505
A
SER
506
n
337
SER
506
A
LEU
507
n
338
LEU
507
A
TYR
508
n
339
TYR
508
A
ARG
509
n
340
ARG
509
A
PRO
510
n
341
PRO
510
A
GLU
511
n
342
GLU
511
A
ALA
512
n
343
ALA
512
A
ASP
513
n
344
ASP
513
A
LYS
514
n
345
LYS
514
A
VAL
515
n
346
VAL
515
A
ALA
516
n
347
ALA
516
A
ALA
517
n
348
ALA
517
A
ILE
518
n
349
ILE
518
A
GLU
519
n
350
GLU
519
A
GLY
520
n
351
GLY
520
A
GLU
521
n
352
GLU
521
A
PHE
522
n
353
PHE
522
A
LYS
523
n
354
LYS
523
A
LEU
524
n
355
LEU
524
A
ARG
525
n
356
ARG
525
A
THR
526
n
357
THR
526
A
GLU
527
n
358
GLU
527
A
GLN
528
n
359
GLN
528
A
ARG
529
n
360
ARG
529
A
LYS
530
n
361
LYS
530
A
THR
531
n
362
THR
531
A
PHE
532
n
363
PHE
532
A
VAL
533
n
364
VAL
533
A
GLU
534
n
365
GLU
534
A
LEU
535
n
366
LEU
535
A
MET
536
n
367
MET
536
A
LYS
537
n
368
LYS
537
A
ARG
538
n
369
ARG
538
A
GLY
539
n
370
GLY
539
A
ASP
540
n
371
ASP
540
A
LEU
541
n
372
LEU
541
A
PRO
542
n
373
PRO
542
A
VAL
543
n
374
VAL
543
A
TRP
544
n
375
TRP
544
A
LEU
545
n
376
LEU
545
A
ALA
546
n
377
ALA
546
A
TYR
547
n
378
TYR
547
A
GLN
548
n
379
GLN
548
A
VAL
549
n
380
VAL
549
A
ALA
550
n
381
ALA
550
A
SER
551
n
382
SER
551
A
ALA
552
n
383
ALA
552
A
GLY
553
n
384
GLY
553
A
ILE
554
n
385
ILE
554
A
THR
555
n
386
THR
555
A
TYR
556
n
387
TYR
556
A
THR
557
n
388
THR
557
A
ASP
558
n
389
ASP
558
A
ARG
559
n
390
ARG
559
A
ARG
560
n
391
ARG
560
A
TRP
561
n
392
TRP
561
A
CYS
562
n
393
CYS
562
A
PHE
563
n
394
PHE
563
A
ASP
564
n
395
ASP
564
A
GLY
565
n
396
GLY
565
A
THR
566
n
397
THR
566
A
THR
567
n
398
THR
567
A
ASN
568
n
399
ASN
568
A
ASN
569
n
400
ASN
569
A
THR
570
n
401
THR
570
A
ILE
571
n
402
ILE
571
A
MET
572
n
403
MET
572
A
GLU
573
n
404
GLU
573
A
ASP
574
n
405
ASP
574
A
SER
575
n
406
SER
575
A
VAL
576
n
407
VAL
576
A
PRO
577
n
408
PRO
577
A
ALA
578
n
409
ALA
578
A
GLU
579
n
410
GLU
579
A
VAL
580
n
411
VAL
580
A
TRP
581
n
412
TRP
581
A
THR
582
n
413
THR
582
A
LYS
583
n
414
LYS
583
A
TYR
584
n
415
TYR
584
A
GLY
585
n
416
GLY
585
A
GLU
586
n
417
GLU
586
A
LYS
587
n
418
LYS
587
A
ARG
588
n
419
ARG
588
A
VAL
589
n
420
VAL
589
A
LEU
590
n
421
LEU
590
A
LYS
591
n
422
LYS
591
A
PRO
592
n
423
PRO
592
A
ARG
593
n
424
ARG
593
A
TRP
594
n
425
TRP
594
A
MET
595
n
426
MET
595
A
ASP
596
n
427
ASP
596
A
ALA
597
n
428
ALA
597
A
ARG
598
n
429
ARG
598
A
VAL
599
n
430
VAL
599
A
CYS
600
n
431
CYS
600
A
SER
601
n
432
SER
601
A
ASP
602
n
433
ASP
602
A
HIS
603
n
434
HIS
603
A
ALA
604
n
435
ALA
604
A
ALA
605
n
436
ALA
605
A
LEU
606
n
437
LEU
606
A
LYS
607
n
438
LYS
607
A
SER
608
n
439
SER
608
A
PHE
609
n
440
PHE
609
A
LYS
610
n
441
LYS
610
A
GLU
611
n
442
GLU
611
A
PHE
612
n
443
PHE
612
A
ALA
613
n
444
ALA
613
A
ALA
614
n
445
ALA
614
A
GLY
615
n
446
GLY
615
A
LYS
616
n
447
LYS
616
A
ARG
617
n
448
ARG
617
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
210
-16
18900
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
192
A
N
LEU
23
A
O
PHE
314
A
O
PHE
145
A
O
MET
315
A
O
MET
146
A
N
MET
284
A
N
MET
115
A
O
ILE
283
A
O
ILE
114
A
N
LEU
222
A
N
LEU
53
A
N
THR
219
A
N
THR
50
A
O
ASP
259
A
O
ASP
90
A
O
VAL
258
A
O
VAL
89
A
N
ARG
242
A
N
ARG
73
A
N
MET
334
A
N
MET
165
A
O
TYR
471
A
O
TYR
302
A
O
MET
472
A
O
MET
303
A
N
ASP
425
A
N
ASP
256
A
O
ILE
424
A
O
ILE
255
A
N
VAL
360
A
N
VAL
191
A
N
TRP
361
A
N
TRP
192
A
O
VAL
406
A
O
VAL
237
A
O
ILE
407
A
O
ILE
238
A
N
ILE
384
A
N
ILE
215
A
N
LYS
431
A
N
LYS
262
A
O
ALA
443
A
O
ALA
274
A
N
VAL
440
A
N
VAL
271
A
O
MET
595
A
O
MET
426
A
N
GLU
573
A
N
GLU
404
A
O
VAL
576
A
O
VAL
407
A
N
VAL
580
A
N
VAL
411
A
O
ARG
588
A
O
ARG
419
1
A
CG
LYS
185
A
CG
LYS
16
1
Y
1
A
CD
LYS
185
A
CD
LYS
16
1
Y
1
A
CE
LYS
185
A
CE
LYS
16
1
Y
1
A
NZ
LYS
185
A
NZ
LYS
16
1
Y
1
A
CG
LYS
187
A
CG
LYS
18
1
Y
1
A
CD
LYS
187
A
CD
LYS
18
1
Y
1
A
CE
LYS
187
A
CE
LYS
18
1
Y
1
A
NZ
LYS
187
A
NZ
LYS
18
1
Y
1
A
CG
HIS
252
A
CG
HIS
83
1
Y
1
A
ND1
HIS
252
A
ND1
HIS
83
1
Y
1
A
CD2
HIS
252
A
CD2
HIS
83
1
Y
1
A
CE1
HIS
252
A
CE1
HIS
83
1
Y
1
A
NE2
HIS
252
A
NE2
HIS
83
1
Y
1
A
CG1
ILE
274
A
CG1
ILE
105
1
Y
1
A
CG2
ILE
274
A
CG2
ILE
105
1
Y
1
A
CD1
ILE
274
A
CD1
ILE
105
1
Y
1
A
CG
ARG
275
A
CG
ARG
106
1
Y
1
A
CD
ARG
275
A
CD
ARG
106
1
Y
1
A
NE
ARG
275
A
NE
ARG
106
1
Y
1
A
CZ
ARG
275
A
CZ
ARG
106
1
Y
1
A
NH1
ARG
275
A
NH1
ARG
106
1
Y
1
A
NH2
ARG
275
A
NH2
ARG
106
1
Y
1
A
CG
ASN
278
A
CG
ASN
109
1
Y
1
A
OD1
ASN
278
A
OD1
ASN
109
1
Y
1
A
ND2
ASN
278
A
ND2
ASN
109
1
Y
1
A
CG
GLU
306
A
CG
GLU
137
1
Y
1
A
CD
GLU
306
A
CD
GLU
137
1
Y
1
A
OE1
GLU
306
A
OE1
GLU
137
1
Y
1
A
OE2
GLU
306
A
OE2
GLU
137
1
Y
1
A
CG
ARG
367
A
CG
ARG
198
1
Y
1
A
CD
ARG
367
A
CD
ARG
198
1
Y
1
A
NE
ARG
367
A
NE
ARG
198
1
Y
1
A
CZ
ARG
367
A
CZ
ARG
198
1
Y
1
A
NH1
ARG
367
A
NH1
ARG
198
1
Y
1
A
NH2
ARG
367
A
NH2
ARG
198
1
Y
1
A
CG
LYS
389
A
CG
LYS
220
1
Y
1
A
CD
LYS
389
A
CD
LYS
220
1
Y
1
A
CE
LYS
389
A
CE
LYS
220
1
Y
1
A
NZ
LYS
389
A
NZ
LYS
220
1
Y
1
A
CG
LYS
419
A
CG
LYS
250
1
Y
1
A
CD
LYS
419
A
CD
LYS
250
1
Y
1
A
CE
LYS
419
A
CE
LYS
250
1
Y
1
A
NZ
LYS
419
A
NZ
LYS
250
1
Y
1
A
CG
LYS
466
A
CG
LYS
297
1
Y
1
A
CD
LYS
466
A
CD
LYS
297
1
Y
1
A
CE
LYS
466
A
CE
LYS
297
1
Y
1
A
NZ
LYS
466
A
NZ
LYS
297
1
Y
1
A
CG
GLU
479
A
CG
GLU
310
1
Y
1
A
CD
GLU
479
A
CD
GLU
310
1
Y
1
A
OE1
GLU
479
A
OE1
GLU
310
1
Y
1
A
OE2
GLU
479
A
OE2
GLU
310
1
Y
1
A
CG
ARG
509
A
CG
ARG
340
1
Y
1
A
CD
ARG
509
A
CD
ARG
340
1
Y
1
A
NE
ARG
509
A
NE
ARG
340
1
Y
1
A
CZ
ARG
509
A
CZ
ARG
340
1
Y
1
A
NH1
ARG
509
A
NH1
ARG
340
1
Y
1
A
NH2
ARG
509
A
NH2
ARG
340
1
Y
1
A
CG
ARG
525
A
CG
ARG
356
1
Y
1
A
CD
ARG
525
A
CD
ARG
356
1
Y
1
A
NE
ARG
525
A
NE
ARG
356
1
Y
1
A
CZ
ARG
525
A
CZ
ARG
356
1
Y
1
A
NH1
ARG
525
A
NH1
ARG
356
1
Y
1
A
NH2
ARG
525
A
NH2
ARG
356
1
Y
1
A
CG
LYS
537
A
CG
LYS
368
1
Y
1
A
CD
LYS
537
A
CD
LYS
368
1
Y
1
A
CE
LYS
537
A
CE
LYS
368
1
Y
1
A
NZ
LYS
537
A
NZ
LYS
368
1
Y
1
A
MET
170
A
MET
1
1
Y
1
A
HIS
171
A
HIS
2
1
Y
1
A
HIS
172
A
HIS
3
1
Y
1
A
HIS
173
A
HIS
4
1
Y
1
A
HIS
174
A
HIS
5
1
Y
1
A
HIS
175
A
HIS
6
1
Y
1
A
HIS
176
A
HIS
7
1
Y
1
A
SER
177
A
SER
8
1
Y
1
A
SER
178
A
SER
9
1
Y
1
A
SER
179
A
SER
10
1
Y
1
A
GLY
180
A
GLY
11
1
Y
1
A
PRO
181
A
PRO
12
1
Y
1
A
SER
182
A
SER
13
1
Y
1
A
THR
251
A
THR
82
1
Y
1
A
A
NZ
OD1
LYS
ASP
200
285
2.15
1
A
ASP
193
-117.34
52.10
1
A
MET
244
-93.53
56.74
1
A
THR
255
-97.01
49.28
1
A
SER
346
-104.45
-60.66
1
A
THR
409
-78.33
-169.70
1
A
MET
414
-110.35
62.85
1
A
ASP
501
-35.34
108.90
1
A
LYS
537
-84.11
-77.58
1
A
CYS
600
-142.20
25.18
82.980
31.5076
13.360
0.2156
0.1678
0.1702
2.200
43.7480
1009
20478
4.9300
97.1000
0.2800
1
FREE R-VALUE
1.370
MOLECULAR REPLACEMENT
23.1900
0.9000
1.1100
2VBC
2.200
43.7480
181
3570
49.48
34.27
30
0
3359
434
0.007
3502
0.936
4761
0.053
530
0.006
618
9.058
2885
0.2743
0.0000
0.2052
2.3131
124
2376
2500
7
84.0000
0.2636
0.0000
0.1983
2.4580
146
2798
2944
7
98.0000
0.2760
0.0000
0.1935
2.6478
157
2811
2968
7
100.0000
0.2720
0.0000
0.1939
2.9142
168
2824
2992
7
100.0000
0.2385
0.0000
0.1764
3.3357
133
2891
3024
7
100.0000
0.2032
0.0000
0.1471
4.2021
97
2888
2985
7
99.0000
0.1551
0.0000
0.1477
43.7565
184
2881
3065
7
100.0000
30.170
2.200
50.000
6ADW
21028
0.097
0.059
0.114
0.956
1
7.800
3.600
99.800
0.419
2.200
2.280
2106
0.876
0.256
0.492
0.994
1
3.600
99.800
0.326
2.280
2.370
2078
0.922
0.198
0.383
0.961
1
3.700
100.000
0.275
2.370
2.480
2102
0.941
0.165
0.321
0.957
1
3.700
100.000
0.213
2.480
2.610
2075
0.952
0.129
0.249
0.988
1
3.700
99.700
0.155
2.610
2.770
2095
0.977
0.094
0.182
0.890
1
3.700
100.000
0.121
2.770
2.990
2109
0.984
0.073
0.141
0.916
1
3.700
99.900
0.098
2.990
3.290
2095
0.981
0.060
0.116
1.071
1
3.700
99.800
0.072
3.290
3.760
2085
0.991
0.045
0.085
1.106
1
3.600
99.500
0.057
3.760
4.740
2123
0.993
0.036
0.067
0.896
1
3.500
99.400
0.056
4.740
50.000
2160
0.993
0.034
0.066
0.795
1
3.600
99.900
data scaling
HKL-2000
refinement
PHENIX
1.12_2829
data extraction
PDB_EXTRACT
3.22
data reduction
HKL-2000
phasing
PHASER
N
Crystal structure of the Zika virus NS3 helicase (apo form)
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
ARG
203
A
ARG
34
HELX_P
A
LYS
215
A
LYS
46
1
AA1
13
A
THR
225
A
THR
56
HELX_P
A
LEU
236
A
LEU
67
1
AA2
12
A
HIS
263
A
HIS
94
HELX_P
A
GLN
272
A
GLN
103
1
AA3
10
A
ASP
291
A
ASP
122
HELX_P
A
MET
307
A
MET
138
1
AA4
17
A
PHE
349
A
PHE
180
HELX_P
A
ASP
354
A
ASP
185
1
AA5
6
A
SER
365
A
SER
196
HELX_P
A
ALA
379
A
ALA
210
1
AA6
15
A
SER
387
A
SER
218
HELX_P
A
PHE
395
A
PHE
226
1
AA7
9
A
PHE
395
A
PHE
226
HELX_P
A
GLN
401
A
GLN
232
1
AA8
7
A
ASP
410
A
ASP
241
HELX_P
A
MET
414
A
MET
245
5
AA9
5
A
THR
449
A
THR
280
HELX_P
A
GLY
458
A
GLY
289
1
AB1
10
A
HIS
484
A
HIS
315
HELX_P
A
ASP
495
A
ASP
326
1
AB2
12
A
TYR
508
A
TYR
339
HELX_P
A
ASP
513
A
ASP
344
1
AB3
6
A
ARG
525
A
ARG
356
HELX_P
A
LYS
537
A
LYS
368
1
AB4
13
A
PRO
542
A
PRO
373
HELX_P
A
ALA
552
A
ALA
383
1
AB5
11
A
ARG
559
A
ARG
390
HELX_P
A
PHE
563
A
PHE
394
5
AB6
5
A
THR
566
A
THR
397
HELX_P
A
THR
570
A
THR
401
5
AB7
5
A
ARG
598
A
ARG
429
HELX_P
A
CYS
600
A
CYS
431
5
AB8
3
A
ASP
602
A
ASP
433
HELX_P
A
ALA
614
A
ALA
445
1
AB9
13
HYDROLASE
Zika virus NS3 helicase, apo form, HYDROLASE
A
GLY
444
A
GLY
275
1
A
PRO
445
A
PRO
276
0.50
POLG_ZIKV
UNP
1
1679
Q32ZE1
PSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDL
MCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKA
DRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDEGHAHWLEARMLLDNIYLQ
DGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEV
WTKYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
1679
2115
6ADW
181
617
Q32ZE1
A
1
12
448
1
expression tag
MET
170
6ADW
A
Q32ZE1
UNP
1
1
expression tag
HIS
171
6ADW
A
Q32ZE1
UNP
2
1
expression tag
HIS
172
6ADW
A
Q32ZE1
UNP
3
1
expression tag
HIS
173
6ADW
A
Q32ZE1
UNP
4
1
expression tag
HIS
174
6ADW
A
Q32ZE1
UNP
5
1
expression tag
HIS
175
6ADW
A
Q32ZE1
UNP
6
1
expression tag
HIS
176
6ADW
A
Q32ZE1
UNP
7
1
expression tag
SER
177
6ADW
A
Q32ZE1
UNP
8
1
expression tag
SER
178
6ADW
A
Q32ZE1
UNP
9
1
expression tag
SER
179
6ADW
A
Q32ZE1
UNP
10
1
expression tag
GLY
180
6ADW
A
Q32ZE1
UNP
11
6
6
3
2
2
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
188
A
GLN
19
A
LEU
192
A
LEU
23
A
ALA
311
A
ALA
142
A
MET
315
A
MET
146
A
LEU
281
A
LEU
112
A
ASP
285
A
ASP
116
A
THR
219
A
THR
50
A
ALA
223
A
ALA
54
A
VAL
258
A
VAL
89
A
CYS
262
A
CYS
93
A
VAL
241
A
VAL
72
A
TYR
243
A
TYR
74
A
ILE
333
A
ILE
164
A
GLU
337
A
GLU
168
A
ASP
469
A
ASP
300
A
TYR
473
A
TYR
304
A
ARG
422
A
ARG
253
A
ASP
425
A
ASP
256
A
THR
359
A
THR
190
A
PHE
362
A
PHE
193
A
PHE
405
A
PHE
236
A
THR
408
A
THR
239
A
VAL
383
A
VAL
214
A
LEU
386
A
LEU
217
A
ARG
428
A
ARG
259
A
LEU
435
A
LEU
266
A
ARG
439
A
ARG
270
A
PRO
447
A
PRO
278
A
MET
595
A
MET
426
A
ASP
596
A
ASP
427
A
MET
572
A
MET
403
A
GLU
573
A
GLU
404
A
VAL
576
A
VAL
407
A
PRO
577
A
PRO
408
A
GLU
579
A
GLU
410
A
TRP
581
A
TRP
412
A
LYS
587
A
LYS
418
A
VAL
589
A
VAL
420
binding site for residue SO4 A 701
A
SO4
701
Software
6
binding site for residue SO4 A 702
A
SO4
702
Software
6
binding site for residue SO4 A 703
A
SO4
703
Software
2
binding site for residue EPE A 704
A
EPE
704
Software
12
A
VAL
366
A
VAL
197
6
1_555
A
ARG
388
A
ARG
219
6
1_555
A
THR
409
A
THR
240
6
1_555
A
HOH
846
F
HOH
6
1_555
A
HOH
911
F
HOH
6
1_555
A
HOH
912
F
HOH
6
1_555
A
ARG
226
A
ARG
57
6
1_555
A
THR
245
A
THR
76
6
1_555
A
THR
246
A
THR
77
6
1_555
A
CYS
262
A
CYS
93
6
1_555
A
THR
265
A
THR
96
6
1_555
A
HOH
845
F
HOH
6
1_555
A
HIS
603
A
HIS
434
2
1_555
A
HOH
804
F
HOH
2
1_555
A
PRO
196
A
PRO
27
12
1_555
A
GLY
197
A
GLY
28
12
1_555
A
ALA
198
A
ALA
29
12
1_555
A
GLY
199
A
GLY
30
12
1_555
A
LYS
200
A
LYS
31
12
1_555
A
THR
201
A
THR
32
12
1_555
A
ARG
202
A
ARG
33
12
1_555
A
GLU
286
A
GLU
117
12
1_555
A
ALA
317
A
ALA
148
12
1_555
A
ARG
459
A
ARG
290
12
1_555
A
ARG
462
A
ARG
293
12
1_555
A
HOH
899
F
HOH
12
1_555
4
P 1 21 1