0.010607 0.006124 0.000000 0.000000 0.012248 0.000000 0.000000 0.000000 0.008365 0.000000 0.000000 0.000000 Nnadi, C.I. Jenkins, M.L. Gentile, D.R. Bateman, L.A. Zaidman, D. Balius, T.E. Nomura, D.K. Burke, J.E. Shokat, K.M. London, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.000 90.000 120.000 94.280 94.280 119.550 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C18 H19 Br N2 O3 391.259 (3R)-N-(6-bromonaphthalen-2-yl)-3-hydroxy-1-propanoyl-L-prolinamide non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C Y 75 N C Y 76 N C Y 77 N C Y 78 N C Y 79 N C N 80 N O N 81 N C N 82 S C N 83 N N N 84 N C N 85 N C N 86 N C N 87 N O N 88 N C N 89 R C N 90 N O N 91 N N Y 92 N C Y 93 N C Y 94 N C Y 95 N C N 96 N BR Y 97 N C N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 R C N 119 N C N 120 N O N 121 N C N 122 N S N 123 N O N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N P N 132 N O N 133 N O N 134 N O N 135 N O N 136 N P N 137 N O N 138 N O N 139 N O N 140 N C N 141 R C N 142 N O N 143 S C N 144 N O N 145 R C N 146 N O N 147 R C Y 148 N N Y 149 N C Y 150 N N Y 151 N C N 152 N C N 153 N O N 154 N N N 155 N C N 156 N N N 157 N N Y 158 N C N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 S C N 176 N C N 177 N O N 178 N C N 179 N C N 180 N C N 181 N O N 182 N N N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 N C N 199 N C N 200 N C N 201 N O N 202 N O N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 N C N 215 N C N 216 N O N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N C N 224 N O N 225 N C N 226 N O N 227 N C N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N N Y 244 N C Y 245 N C Y 246 N N N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N O N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 S C N 266 N C N 267 N C N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N C N 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C N 335 N C N 336 N S N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N MG N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N O N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 R C N 410 N O N 411 N C N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C N 433 N O N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N N N 447 S C N 448 N C N 449 N O N 450 N C N 451 N C N 452 N C N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing Y 77 N doub Y 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing Y 83 N sing Y 84 N doub Y 85 N doub Y 86 N sing Y 87 N sing Y 88 N sing Y 89 N doub N 90 N sing Y 91 N doub Y 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N sing Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing Y 163 N doub N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing Y 243 N sing Y 244 N doub Y 245 N doub N 246 N sing Y 247 N sing N 248 N sing Y 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub N 425 N sing Y 426 N doub N 427 N sing Y 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing US J Chem Inf Model 1549-960X 58 464 471 10.1021/acs.jcim.7b00399 29320178 Novel K-Ras G12C Switch-II Covalent Binders Destabilize Ras and Accelerate Nucleotide Exchange. 2018 10.2210/pdb6ark/pdb pdb_00006ark 100 1 CCD 2015-03-25 ADSC QUANTUM 315r Double crystal, Si(111) SINGLE WAVELENGTH M x-ray 1 0.999 1.0 8.2.1 ALS 0.999 SYNCHROTRON ALS BEAMLINE 8.2.1 19352.785 GTPase KRas G12C, C51S, C80L, C118S 1 man polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 391.259 (3R)-N-(6-bromonaphthalen-2-yl)-3-hydroxy-1-propanoyl-L-prolinamide 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 18.015 water 56 nat water K-Ras 2,Ki-Ras,c-K-ras,c-Ki-ras no no GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 170 KRAS, KRAS2, RASK2 9606 Homo sapiens 83333 Escherichia coli K-12 Biological sequence 1 2.64 53.44 VAPOR DIFFUSION, HANGING DROP 7.5 5% PEG 400, 2M (NH4)2SO4, 0.1M HEPES 293 citation pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn repository Initial release Database references Author supporting evidence Data collection Database references Derived calculations Refinement description 1 0 2018-01-31 1 1 2018-03-07 1 2 2019-12-04 1 3 2023-10-04 _citation.journal_volume _citation.page_first _citation.page_last _citation.title _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id United States National Institutes of Health/National Cancer Institute (NIH/NCI) 5R01CA190408-03 Israel Israel Science Foundation 1097/16 United States National Institutes of Health/National Cancer Institute (NIH/NCI) 1F30CA214015-01 N RCSB Y RCSB 2017-08-22 REL REL BQD BQD SUBJECT OF INVESTIGATION GDP GUANOSINE-5'-DIPHOSPHATE MG MAGNESIUM ION BQD (3R)-N-(6-bromonaphthalen-2-yl)-3-hydroxy-1-propanoyl-L-prolinamide GOL GLYCEROL HOH water 4L9S PDB experimental model GDP 170 2 GDP GDP 201 A MG 171 3 MG MG 202 A LIG 172 4 BQD BQD 203 A GOL 173 5 GOL GOL 204 A GOL 174 5 GOL GOL 205 A HOH 210 6 HOH HOH 301 A HOH 193 6 HOH HOH 302 A HOH 228 6 HOH HOH 303 A HOH 215 6 HOH HOH 304 A HOH 220 6 HOH HOH 305 A HOH 214 6 HOH HOH 306 A HOH 194 6 HOH HOH 307 A HOH 219 6 HOH HOH 308 A HOH 189 6 HOH HOH 309 A HOH 195 6 HOH HOH 310 A HOH 230 6 HOH HOH 311 A HOH 201 6 HOH HOH 312 A HOH 187 6 HOH HOH 313 A HOH 226 6 HOH HOH 314 A HOH 192 6 HOH HOH 315 A HOH 224 6 HOH HOH 316 A HOH 178 6 HOH HOH 317 A HOH 204 6 HOH HOH 318 A HOH 200 6 HOH HOH 319 A HOH 182 6 HOH HOH 320 A HOH 216 6 HOH HOH 321 A HOH 181 6 HOH HOH 322 A HOH 202 6 HOH HOH 323 A HOH 176 6 HOH HOH 324 A HOH 206 6 HOH HOH 325 A HOH 180 6 HOH HOH 326 A HOH 213 6 HOH HOH 327 A HOH 207 6 HOH HOH 328 A HOH 185 6 HOH HOH 329 A HOH 205 6 HOH HOH 330 A HOH 197 6 HOH HOH 331 A HOH 188 6 HOH HOH 332 A HOH 186 6 HOH HOH 333 A HOH 183 6 HOH HOH 334 A HOH 198 6 HOH HOH 335 A HOH 179 6 HOH HOH 336 A HOH 227 6 HOH HOH 337 A HOH 225 6 HOH HOH 338 A HOH 177 6 HOH HOH 339 A HOH 190 6 HOH HOH 340 A HOH 218 6 HOH HOH 341 A HOH 196 6 HOH HOH 342 A HOH 191 6 HOH HOH 343 A HOH 209 6 HOH HOH 344 A HOH 175 6 HOH HOH 345 A HOH 221 6 HOH HOH 346 A HOH 184 6 HOH HOH 347 A HOH 208 6 HOH HOH 348 A HOH 211 6 HOH HOH 349 A HOH 223 6 HOH HOH 350 A HOH 203 6 HOH HOH 351 A HOH 217 6 HOH HOH 352 A HOH 229 6 HOH HOH 353 A HOH 212 6 HOH HOH 354 A HOH 222 6 HOH HOH 355 A HOH 199 6 HOH HOH 356 A 5.960 5.960 30.430 30.430 Phaser MODE: MR_AUTO GLY 0 n 1 GLY 0 A MET 1 n 2 MET 1 A THR 2 n 3 THR 2 A GLU 3 n 4 GLU 3 A TYR 4 n 5 TYR 4 A LYS 5 n 6 LYS 5 A LEU 6 n 7 LEU 6 A VAL 7 n 8 VAL 7 A VAL 8 n 9 VAL 8 A VAL 9 n 10 VAL 9 A GLY 10 n 11 GLY 10 A ALA 11 n 12 ALA 11 A CYS 12 n 13 CYS 12 A GLY 13 n 14 GLY 13 A VAL 14 n 15 VAL 14 A GLY 15 n 16 GLY 15 A LYS 16 n 17 LYS 16 A SER 17 n 18 SER 17 A ALA 18 n 19 ALA 18 A LEU 19 n 20 LEU 19 A THR 20 n 21 THR 20 A ILE 21 n 22 ILE 21 A GLN 22 n 23 GLN 22 A LEU 23 n 24 LEU 23 A ILE 24 n 25 ILE 24 A GLN 25 n 26 GLN 25 A ASN 26 n 27 ASN 26 A HIS 27 n 28 HIS 27 A PHE 28 n 29 PHE 28 A VAL 29 n 30 VAL 29 A ASP 30 n 31 ASP 30 A GLU 31 n 32 GLU 31 A TYR 32 n 33 TYR 32 A ASP 33 n 34 ASP 33 A PRO 34 n 35 PRO 34 A THR 35 n 36 THR 35 A ILE 36 n 37 ILE 36 A GLU 37 n 38 GLU 37 A ASP 38 n 39 ASP 38 A SER 39 n 40 SER 39 A TYR 40 n 41 TYR 40 A ARG 41 n 42 ARG 41 A LYS 42 n 43 LYS 42 A GLN 43 n 44 GLN 43 A VAL 44 n 45 VAL 44 A VAL 45 n 46 VAL 45 A ILE 46 n 47 ILE 46 A ASP 47 n 48 ASP 47 A GLY 48 n 49 GLY 48 A GLU 49 n 50 GLU 49 A THR 50 n 51 THR 50 A SER 51 n 52 SER 51 A LEU 52 n 53 LEU 52 A LEU 53 n 54 LEU 53 A ASP 54 n 55 ASP 54 A ILE 55 n 56 ILE 55 A LEU 56 n 57 LEU 56 A ASP 57 n 58 ASP 57 A THR 58 n 59 THR 58 A ALA 59 n 60 ALA 59 A GLY 60 n 61 GLY 60 A GLN 61 n 62 GLN 61 A GLU 62 n 63 GLU 62 A n 64 63 A n 65 64 A n 66 65 A n 67 66 A MET 67 n 68 MET 67 A ARG 68 n 69 ARG 68 A ASP 69 n 70 ASP 69 A GLN 70 n 71 GLN 70 A TYR 71 n 72 TYR 71 A MET 72 n 73 MET 72 A ARG 73 n 74 ARG 73 A THR 74 n 75 THR 74 A GLY 75 n 76 GLY 75 A GLU 76 n 77 GLU 76 A GLY 77 n 78 GLY 77 A PHE 78 n 79 PHE 78 A LEU 79 n 80 LEU 79 A LEU 80 n 81 LEU 80 A VAL 81 n 82 VAL 81 A PHE 82 n 83 PHE 82 A ALA 83 n 84 ALA 83 A ILE 84 n 85 ILE 84 A ASN 85 n 86 ASN 85 A ASN 86 n 87 ASN 86 A THR 87 n 88 THR 87 A LYS 88 n 89 LYS 88 A SER 89 n 90 SER 89 A PHE 90 n 91 PHE 90 A GLU 91 n 92 GLU 91 A ASP 92 n 93 ASP 92 A ILE 93 n 94 ILE 93 A HIS 94 n 95 HIS 94 A HIS 95 n 96 HIS 95 A TYR 96 n 97 TYR 96 A ARG 97 n 98 ARG 97 A GLU 98 n 99 GLU 98 A GLN 99 n 100 GLN 99 A ILE 100 n 101 ILE 100 A LYS 101 n 102 LYS 101 A ARG 102 n 103 ARG 102 A VAL 103 n 104 VAL 103 A LYS 104 n 105 LYS 104 A ASP 105 n 106 ASP 105 A SER 106 n 107 SER 106 A GLU 107 n 108 GLU 107 A ASP 108 n 109 ASP 108 A VAL 109 n 110 VAL 109 A PRO 110 n 111 PRO 110 A MET 111 n 112 MET 111 A VAL 112 n 113 VAL 112 A LEU 113 n 114 LEU 113 A VAL 114 n 115 VAL 114 A GLY 115 n 116 GLY 115 A ASN 116 n 117 ASN 116 A LYS 117 n 118 LYS 117 A SER 118 n 119 SER 118 A ASP 119 n 120 ASP 119 A LEU 120 n 121 LEU 120 A PRO 121 n 122 PRO 121 A SER 122 n 123 SER 122 A ARG 123 n 124 ARG 123 A THR 124 n 125 THR 124 A VAL 125 n 126 VAL 125 A ASP 126 n 127 ASP 126 A THR 127 n 128 THR 127 A LYS 128 n 129 LYS 128 A GLN 129 n 130 GLN 129 A ALA 130 n 131 ALA 130 A GLN 131 n 132 GLN 131 A ASP 132 n 133 ASP 132 A LEU 133 n 134 LEU 133 A ALA 134 n 135 ALA 134 A ARG 135 n 136 ARG 135 A SER 136 n 137 SER 136 A TYR 137 n 138 TYR 137 A GLY 138 n 139 GLY 138 A ILE 139 n 140 ILE 139 A PRO 140 n 141 PRO 140 A PHE 141 n 142 PHE 141 A ILE 142 n 143 ILE 142 A GLU 143 n 144 GLU 143 A THR 144 n 145 THR 144 A SER 145 n 146 SER 145 A ALA 146 n 147 ALA 146 A LYS 147 n 148 LYS 147 A THR 148 n 149 THR 148 A ARG 149 n 150 ARG 149 A GLN 150 n 151 GLN 150 A GLY 151 n 152 GLY 151 A VAL 152 n 153 VAL 152 A ASP 153 n 154 ASP 153 A ASP 154 n 155 ASP 154 A ALA 155 n 156 ALA 155 A PHE 156 n 157 PHE 156 A TYR 157 n 158 TYR 157 A THR 158 n 159 THR 158 A LEU 159 n 160 LEU 159 A VAL 160 n 161 VAL 160 A ARG 161 n 162 ARG 161 A GLU 162 n 163 GLU 162 A ILE 163 n 164 ILE 163 A ARG 164 n 165 ARG 164 A LYS 165 n 166 LYS 165 A HIS 166 n 167 HIS 166 A LYS 167 n 168 LYS 167 A GLU 168 n 169 GLU 168 A LYS 169 n 170 LYS 169 A 0.0951 0.0307 0.1153 0.8850 -0.3077 0.6617 0.1333 -1.1220 1.7694 0.2372 0.0584 -0.4337 -0.2631 -0.0059 0.0685 0.2986 0.0185 0.0652 0.3692 -0.2317 0.7325 refined -16.3741 19.5348 -24.6202 X-RAY DIFFRACTION 2.1392 0.8346 0.8191 0.5934 0.1065 0.4955 0.2403 -0.6356 0.0164 0.3224 0.0820 -0.3646 0.2607 0.0060 0.2118 0.4639 0.1129 -0.2931 1.0896 -0.6936 0.9541 refined -8.8813 18.2580 -16.0460 X-RAY DIFFRACTION 6.7704 -1.5150 2.6718 1.7413 -2.5336 3.7142 -0.0119 0.0262 0.7869 0.4785 0.0661 -0.2953 -0.7295 0.4368 0.4204 0.4390 -0.0133 -0.0189 0.4064 -0.3605 0.5830 refined -22.1342 24.3819 -20.9140 X-RAY DIFFRACTION 3.6717 0.9121 -1.7922 6.0871 4.4658 4.9941 0.6853 -0.3640 0.8922 0.6945 0.5718 -0.0066 -1.8836 -0.2620 -0.3193 0.5338 0.0435 0.1459 0.2725 -0.0437 0.3445 refined -28.9880 26.2251 -33.2769 X-RAY DIFFRACTION 5.2804 4.9211 -2.4145 8.6085 3.1211 8.3022 0.4949 -0.9028 0.1651 -0.2577 0.0092 0.1638 0.0391 0.4556 -0.4757 0.2184 -0.0401 0.0304 0.3455 -0.1963 0.4581 refined -20.9562 17.7697 -21.0840 X-RAY DIFFRACTION 4.2082 -4.3692 -1.5561 5.1810 2.8453 2.9057 0.5618 -0.6511 0.0900 1.3537 -0.3902 -0.5458 0.6414 0.4379 0.2400 0.9293 -0.0218 0.0802 0.7940 0.0707 0.5055 refined -25.1117 8.7698 -16.4058 X-RAY DIFFRACTION 3.8576 -4.1787 -2.7154 6.7117 1.3740 2.9297 0.0371 0.1095 -0.6529 0.0998 -0.1307 -0.2213 0.0697 -0.0184 0.0886 0.2238 -0.0097 -0.0202 0.2095 0.0054 0.2773 refined -11.5272 6.9502 -28.5720 X-RAY DIFFRACTION 4.7387 4.7783 -4.8384 4.8411 -4.8864 4.9573 -0.4963 0.0980 -0.1655 0.0744 0.4634 0.1886 0.3042 -0.3722 0.0803 0.2857 0.0177 0.0013 0.3010 0.0354 0.3605 refined -18.6910 0.3737 -25.4756 X-RAY DIFFRACTION 8.9575 4.3219 -4.6970 3.4088 -0.0170 8.0177 -0.4575 -0.2094 -0.0086 0.4065 0.1522 1.2725 0.5619 -0.5017 0.1375 0.3008 -0.0377 0.0956 0.3021 -0.0212 0.4071 refined -28.4845 2.2563 -27.4368 X-RAY DIFFRACTION 5.5894 2.0544 2.5274 4.6924 0.3841 1.1889 -0.2163 0.7352 -0.2739 -0.3644 0.3561 -0.5043 -0.0276 0.2793 -0.1215 0.1936 0.0084 0.0468 0.2621 -0.0641 0.3023 refined -8.2175 8.4466 -36.5726 X-RAY DIFFRACTION 4.1847 -0.5727 1.2152 0.5382 0.3263 1.8584 -0.1245 0.4639 0.7698 -0.0595 0.2205 -0.3877 0.0100 0.2949 -0.1487 0.1726 0.0273 -0.0233 0.2344 0.0214 0.4064 refined -13.5211 12.4111 -35.7396 X-RAY DIFFRACTION 2.1932 -0.9077 1.2968 4.3272 -0.6442 4.1725 0.1279 0.0241 0.6908 -0.0014 -0.2080 0.0555 -0.0728 -0.3012 0.0320 0.1900 0.0296 0.0389 0.2245 -0.0120 0.3216 refined -25.1508 16.6037 -33.7033 X-RAY DIFFRACTION A 1 A 28 X-RAY DIFFRACTION 1 (chain A and resid 1:28) A 29 A 38 X-RAY DIFFRACTION 2 (chain A and resid 29:38) A 39 A 43 X-RAY DIFFRACTION 3 (chain A and resid 39:43) A 44 A 50 X-RAY DIFFRACTION 4 (chain A and resid 44:50) A 51 A 60 X-RAY DIFFRACTION 5 (chain A and resid 51:60) A 68 A 74 X-RAY DIFFRACTION 6 (chain A and resid 68:74) A 75 A 92 X-RAY DIFFRACTION 7 (chain A and resid 75:92) A 93 A 102 X-RAY DIFFRACTION 8 (chain A and resid 93:102) A 103 A 110 X-RAY DIFFRACTION 9 (chain A and resid 103:110) A 111 A 134 X-RAY DIFFRACTION 10 (chain A and resid 111:134) A 135 A 149 X-RAY DIFFRACTION 11 (chain A and resid 135:149) A 150 A 169 X-RAY DIFFRACTION 12 (chain A and resid 150:169) author_and_software_defined_assembly PISA 1 monomeric gel filtration mass spectrometry A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A GDP 201 B O2B GDP 1_555 87.4 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 305 G O HOH 1_555 169.1 A GDP 201 B O2B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 305 G O HOH 1_555 85.2 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 308 G O HOH 1_555 97.9 A GDP 201 B O2B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 308 G O HOH 1_555 81.3 A HOH 305 G O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 308 G O HOH 1_555 73.2 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 310 G O HOH 1_555 106.4 A GDP 201 B O2B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 310 G O HOH 1_555 95.6 A HOH 305 G O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 310 G O HOH 1_555 82.2 A HOH 308 G O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 310 G O HOH 1_555 155.3 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 A HOH 314 G O HOH 1_555 116.5 A GDP 201 B O2B GDP 1_555 A MG 202 C MG MG 1_555 A HOH 314 G O HOH 1_555 155.8 A HOH 305 G O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 314 G O HOH 1_555 70.6 A HOH 308 G O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 314 G O HOH 1_555 91.0 A HOH 310 G O HOH 1_555 A MG 202 C MG MG 1_555 A HOH 314 G O HOH 1_555 81.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 44 A N VAL 45 A O SER 51 A O SER 52 A O ASP 54 A O ASP 55 A N LEU 6 A N LEU 7 A N VAL 9 A N VAL 10 A O VAL 81 A O VAL 82 A N LEU 80 A N LEU 81 A O VAL 114 A O VAL 115 A N LEU 113 A N LEU 114 A O ILE 142 A O ILE 143 1 A CG GLN 25 A CG GLN 26 1 Y 1 A CD GLN 25 A CD GLN 26 1 Y 1 A OE1 GLN 25 A OE1 GLN 26 1 Y 1 A NE2 GLN 25 A NE2 GLN 26 1 Y 1 A CG GLU 31 A CG GLU 32 1 Y 1 A CD GLU 31 A CD GLU 32 1 Y 1 A OE1 GLU 31 A OE1 GLU 32 1 Y 1 A OE2 GLU 31 A OE2 GLU 32 1 Y 1 A CG GLU 62 A CG GLU 63 1 Y 1 A CD GLU 62 A CD GLU 63 1 Y 1 A OE1 GLU 62 A OE1 GLU 63 1 Y 1 A OE2 GLU 62 A OE2 GLU 63 1 Y 1 A CG GLN 70 A CG GLN 71 1 Y 1 A CD GLN 70 A CD GLN 71 1 Y 1 A OE1 GLN 70 A OE1 GLN 71 1 Y 1 A NE2 GLN 70 A NE2 GLN 71 1 Y 1 A CG ARG 102 A CG ARG 103 1 Y 1 A CD ARG 102 A CD ARG 103 1 Y 1 A NE ARG 102 A NE ARG 103 1 Y 1 A CZ ARG 102 A CZ ARG 103 1 Y 1 A NH1 ARG 102 A NH1 ARG 103 1 Y 1 A NH2 ARG 102 A NH2 ARG 103 1 Y 1 A GLU 63 A GLU 64 1 Y 1 A TYR 64 A TYR 65 1 Y 1 A SER 65 A SER 66 1 Y 1 A ALA 66 A ALA 67 1 Y 1 A A OD1 O ASP HOH 154 301 2.15 B 1 A A N N GLY GLY 0 0 1.76 1_555 17_554 1 A ASP 33 -45.81 103.81 1 A GLN 61 -146.39 -9.40 1 A ASP 108 -108.44 67.54 1 A LYS 117 75.56 35.75 1 A SER 122 49.82 75.73 405.570 56.8710 0.000 0.2314 0.1937 0.1957 1.7500 29.8810 2116 39968 5.2900 99.9400 0.2300 1 FREE R-VALUE 1.330 MOLECULAR REPLACEMENT 24.5700 0.9000 1.1100 4L9S 1.7500 29.8810 56 1470 60.74 42.50 110 0 1304 166 1.750 30.430 6ARK 39968 0.999 0.072 0.033 0.079 1 13.600 5.900 100.000 0.996 1.750 1.780 0.702 0.451 1.095 1 5.900 100.000 0.018 9.090 30.430 1.000 0.009 0.020 1 5.000 97.400 refinement PHENIX 1.9 data scaling Aimless 0.3.8 data extraction PDB_EXTRACT 3.22 data reduction MOSFLM 7.1.3 phasing PHASER 2.5.6 N Crystal Structure of compound 10 covalently bound to K-Ras G12C 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N A GLY 15 A GLY 16 HELX_P A ASN 26 A ASN 27 1 AA1 12 A ARG 68 A ARG 69 HELX_P A GLY 75 A GLY 76 1 AA2 8 A ASN 86 A ASN 87 HELX_P A ASP 92 A ASP 93 1 AA3 7 A ASP 92 A ASP 93 HELX_P A ASP 105 A ASP 106 1 AA4 14 A ASP 126 A ASP 127 HELX_P A GLY 138 A GLY 139 1 AA5 13 A GLY 151 A GLY 152 HELX_P A LYS 167 A LYS 168 1 AA6 17 covale 1.777 none A CYS 12 A SG CYS 13 1_555 A BQD 203 D C07 BQD 1_555 metalc 1.986 A SER 17 A OG SER 18 1_555 A MG 202 C MG MG 1_555 metalc 2.194 A GDP 201 B O2B GDP 1_555 A MG 202 C MG MG 1_555 metalc 2.145 A MG 202 C MG MG 1_555 A HOH 305 G O HOH 1_555 metalc 2.251 A MG 202 C MG MG 1_555 A HOH 308 G O HOH 1_555 metalc 2.133 A MG 202 C MG MG 1_555 A HOH 310 G O HOH 1_555 metalc 2.187 A MG 202 C MG MG 1_555 A HOH 314 G O HOH 1_555 signaling protein/inhibitor DOCKovalent, covalent docking, K-Ras G12C, covalent inhibitors, covalent fragments, SIGNALING PROTEIN, signaling protein-inhibitor complex RASK_HUMAN UNP 1 1 P01116 P01116-2 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK 1 169 6ARK 1 169 P01116 A 1 2 170 1 expression tag GLY 0 6ARK A P01116 UNP 1 1 GLY engineered mutation CYS 12 6ARK A P01116 UNP 12 13 1 CYS engineered mutation SER 51 6ARK A P01116 UNP 51 52 1 CYS engineered mutation LEU 80 6ARK A P01116 UNP 80 81 1 CYS engineered mutation SER 118 6ARK A P01116 UNP 118 119 6 anti-parallel parallel parallel parallel parallel A ASP 38 A ASP 39 A ILE 46 A ILE 47 A GLU 49 A GLU 50 A ASP 57 A ASP 58 A THR 2 A THR 3 A VAL 9 A VAL 10 A GLY 77 A GLY 78 A ALA 83 A ALA 84 A MET 111 A MET 112 A ASN 116 A ASN 117 A PHE 141 A PHE 142 A GLU 143 A GLU 144 binding site for residue GDP A 201 A GDP 201 Software 21 binding site for residue MG A 202 A MG 202 Software 7 binding site for residue BQD A 203 A BQD 203 Software 5 binding site for residue GOL A 204 A GOL 204 Software 8 binding site for residue GOL A 205 A GOL 205 Software 8 A GLY 13 A GLY 14 21 1_555 A VAL 14 A VAL 15 21 1_555 A GLY 15 A GLY 16 21 1_555 A LYS 16 A LYS 17 21 1_555 A SER 17 A SER 18 21 1_555 A ALA 18 A ALA 19 21 1_555 A PHE 28 A PHE 29 21 1_555 A VAL 29 A VAL 30 21 1_555 A ASP 30 A ASP 31 21 1_555 A ASN 116 A ASN 117 21 1_555 A LYS 117 A LYS 118 21 1_555 A ASP 119 A ASP 120 21 1_555 A LEU 120 A LEU 121 21 1_555 A SER 145 A SER 146 21 1_555 A ALA 146 A ALA 147 21 1_555 A LYS 147 A LYS 148 21 1_555 A MG 202 C MG 21 1_555 A HOH 305 G HOH 21 1_555 A HOH 308 G HOH 21 1_555 A HOH 327 G HOH 21 1_555 A HOH 343 G HOH 21 1_555 A SER 17 A SER 18 7 1_555 A ASP 57 A ASP 58 7 1_555 A GDP 201 B GDP 7 1_555 A HOH 305 G HOH 7 1_555 A HOH 308 G HOH 7 1_555 A HOH 310 G HOH 7 1_555 A HOH 314 G HOH 7 1_555 A CYS 12 A CYS 13 5 1_555 A ASN 86 A ASN 87 5 1_555 A ASP 92 A ASP 93 5 3_555 A HIS 95 A HIS 96 5 3_555 A GLN 99 A GLN 100 5 3_555 A ASN 85 A ASN 86 8 1_555 A GLU 91 A GLU 92 8 3_555 A HIS 94 A HIS 95 8 3_555 A LEU 120 A LEU 121 8 1_555 A PRO 121 A PRO 122 8 1_555 A SER 122 A SER 123 8 1_555 A HOH 311 G HOH 8 3_555 A HOH 313 G HOH 8 1_555 A ASP 47 A ASP 48 8 10_454 A GLN 150 A GLN 151 8 1_555 A GLY 151 A GLY 152 8 1_555 A ASP 154 A ASP 155 8 1_555 A TYR 157 A TYR 158 8 10_454 A HOH 306 G HOH 8 1_555 A HOH 319 G HOH 8 1_555 A HOH 325 G HOH 8 1_555 155 H 3 2