0.010822 0.006248 0.000000 0.000000 0.012496 0.000000 0.000000 0.000000 0.017389 0.000000 0.000000 0.000000 Gres, A.T. Kirby, K.A. Sarafianos, S.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 92.407 92.407 57.509 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N I N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N N N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N S N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 R C N 311 N O N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C N 361 N O N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To be published 0353 Identification of a novel element in HIV-1 capsid critical for assembly and maturation 10.2210/pdb6axt/pdb pdb_00006axt 100 1 CCD 2015-11-08 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.033760 1.0 23-ID-B APS 1.033760 SYNCHROTRON APS BEAMLINE 23-ID-B 25602.416 HIV-1 capsid protein UNP residues 133-363 T58S, T107I, P122A 1 man polymer 126.904 IODIDE ION 9 syn non-polymer 35.453 CHLORIDE ION 6 syn non-polymer 18.015 water 41 nat water no no PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNSVGGHQAAMQMLKETINEEAAEW DRLHPVHAGPIAPGQMREPRGSDIAGITSTLQEQIGWMTHNAPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEP FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNSVGGHQAAMQMLKETINEEAAEW DRLHPVHAGPIAPGQMREPRGSDIAGITSTLQEQIGWMTHNAPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEP FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 231 gag 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET11a 1 2.77 55.57 0.210 VAPOR DIFFUSION, HANGING DROP PEG3350, NaI, MIB, Glycerol 291 pdbx_audit_support pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Author supporting evidence Data collection Author supporting evidence Data collection Database references Refinement description 1 0 2018-09-12 1 1 2019-02-20 1 2 2019-12-11 1 3 2023-10-04 _pdbx_audit_support.funding_organization _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI120860 Structure of the native full-length HIV-1 capsid protein P122A mutant of the HIV-1 capsid protein V11I/T58A/P122A mutant of the HIV-1 capsid protein N RCSB Y RCSB 2017-09-07 REL REL IOD IODIDE ION CL CHLORIDE ION HOH water 4XFX PDB experimental model IOD 301 2 IOD IOD 301 A IOD 302 2 IOD IOD 302 A IOD 303 2 IOD IOD 303 A IOD 304 2 IOD IOD 304 A IOD 305 2 IOD IOD 305 A IOD 306 2 IOD IOD 306 A IOD 307 2 IOD IOD 307 A IOD 308 2 IOD IOD 308 A IOD 309 2 IOD IOD 309 A CL 310 3 CL CL 310 A CL 311 3 CL CL 311 A CL 312 3 CL CL 312 A CL 313 3 CL CL 313 A CL 314 3 CL CL 314 A CL 315 3 CL CL 315 A HOH 435 4 HOH HOH 401 A HOH 423 4 HOH HOH 402 A HOH 420 4 HOH HOH 403 A HOH 429 4 HOH HOH 404 A HOH 406 4 HOH HOH 405 A HOH 438 4 HOH HOH 406 A HOH 437 4 HOH HOH 407 A HOH 412 4 HOH HOH 408 A HOH 432 4 HOH HOH 409 A HOH 417 4 HOH HOH 410 A HOH 402 4 HOH HOH 411 A HOH 414 4 HOH HOH 412 A HOH 430 4 HOH HOH 413 A HOH 411 4 HOH HOH 414 A HOH 433 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 403 4 HOH HOH 417 A HOH 441 4 HOH HOH 418 A HOH 407 4 HOH HOH 419 A HOH 424 4 HOH HOH 420 A HOH 409 4 HOH HOH 421 A HOH 410 4 HOH HOH 422 A HOH 422 4 HOH HOH 423 A HOH 401 4 HOH HOH 424 A HOH 440 4 HOH HOH 425 A HOH 434 4 HOH HOH 426 A HOH 425 4 HOH HOH 427 A HOH 413 4 HOH HOH 428 A HOH 436 4 HOH HOH 429 A HOH 408 4 HOH HOH 430 A HOH 418 4 HOH HOH 431 A HOH 404 4 HOH HOH 432 A HOH 431 4 HOH HOH 433 A HOH 421 4 HOH HOH 434 A HOH 405 4 HOH HOH 435 A HOH 415 4 HOH HOH 436 A HOH 439 4 HOH HOH 437 A HOH 419 4 HOH HOH 438 A HOH 428 4 HOH HOH 439 A HOH 427 4 HOH HOH 440 A HOH 426 4 HOH HOH 441 A 2.400 2.400 46.700 46.700 Phaser MODE: MR_AUTO PRO 1 n 1 PRO 1 A ILE 2 n 2 ILE 2 A VAL 3 n 3 VAL 3 A GLN 4 n 4 GLN 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A GLN 9 n 9 GLN 9 A MET 10 n 10 MET 10 A VAL 11 n 11 VAL 11 A HIS 12 n 12 HIS 12 A GLN 13 n 13 GLN 13 A ALA 14 n 14 ALA 14 A ILE 15 n 15 ILE 15 A SER 16 n 16 SER 16 A PRO 17 n 17 PRO 17 A ARG 18 n 18 ARG 18 A THR 19 n 19 THR 19 A LEU 20 n 20 LEU 20 A ASN 21 n 21 ASN 21 A ALA 22 n 22 ALA 22 A TRP 23 n 23 TRP 23 A VAL 24 n 24 VAL 24 A LYS 25 n 25 LYS 25 A VAL 26 n 26 VAL 26 A VAL 27 n 27 VAL 27 A GLU 28 n 28 GLU 28 A GLU 29 n 29 GLU 29 A LYS 30 n 30 LYS 30 A ALA 31 n 31 ALA 31 A PHE 32 n 32 PHE 32 A SER 33 n 33 SER 33 A PRO 34 n 34 PRO 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A ILE 37 n 37 ILE 37 A PRO 38 n 38 PRO 38 A MET 39 n 39 MET 39 A PHE 40 n 40 PHE 40 A SER 41 n 41 SER 41 A ALA 42 n 42 ALA 42 A LEU 43 n 43 LEU 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A GLY 46 n 46 GLY 46 A ALA 47 n 47 ALA 47 A THR 48 n 48 THR 48 A PRO 49 n 49 PRO 49 A GLN 50 n 50 GLN 50 A ASP 51 n 51 ASP 51 A LEU 52 n 52 LEU 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A MET 55 n 55 MET 55 A LEU 56 n 56 LEU 56 A ASN 57 n 57 ASN 57 A SER 58 n 58 SER 58 A VAL 59 n 59 VAL 59 A GLY 60 n 60 GLY 60 A GLY 61 n 61 GLY 61 A HIS 62 n 62 HIS 62 A GLN 63 n 63 GLN 63 A ALA 64 n 64 ALA 64 A ALA 65 n 65 ALA 65 A MET 66 n 66 MET 66 A GLN 67 n 67 GLN 67 A MET 68 n 68 MET 68 A LEU 69 n 69 LEU 69 A LYS 70 n 70 LYS 70 A GLU 71 n 71 GLU 71 A THR 72 n 72 THR 72 A ILE 73 n 73 ILE 73 A ASN 74 n 74 ASN 74 A GLU 75 n 75 GLU 75 A GLU 76 n 76 GLU 76 A ALA 77 n 77 ALA 77 A ALA 78 n 78 ALA 78 A GLU 79 n 79 GLU 79 A TRP 80 n 80 TRP 80 A ASP 81 n 81 ASP 81 A ARG 82 n 82 ARG 82 A LEU 83 n 83 LEU 83 A HIS 84 n 84 HIS 84 A PRO 85 n 85 PRO 85 A VAL 86 n 86 VAL 86 A HIS 87 n 87 HIS 87 A ALA 88 n 88 ALA 88 A GLY 89 n 89 GLY 89 A PRO 90 n 90 PRO 90 A ILE 91 n 91 ILE 91 A ALA 92 n 92 ALA 92 A PRO 93 n 93 PRO 93 A GLY 94 n 94 GLY 94 A GLN 95 n 95 GLN 95 A MET 96 n 96 MET 96 A ARG 97 n 97 ARG 97 A GLU 98 n 98 GLU 98 A PRO 99 n 99 PRO 99 A ARG 100 n 100 ARG 100 A GLY 101 n 101 GLY 101 A SER 102 n 102 SER 102 A ASP 103 n 103 ASP 103 A ILE 104 n 104 ILE 104 A ALA 105 n 105 ALA 105 A GLY 106 n 106 GLY 106 A ILE 107 n 107 ILE 107 A THR 108 n 108 THR 108 A SER 109 n 109 SER 109 A THR 110 n 110 THR 110 A LEU 111 n 111 LEU 111 A GLN 112 n 112 GLN 112 A GLU 113 n 113 GLU 113 A GLN 114 n 114 GLN 114 A ILE 115 n 115 ILE 115 A GLY 116 n 116 GLY 116 A TRP 117 n 117 TRP 117 A MET 118 n 118 MET 118 A THR 119 n 119 THR 119 A HIS 120 n 120 HIS 120 A ASN 121 n 121 ASN 121 A ALA 122 n 122 ALA 122 A PRO 123 n 123 PRO 123 A ILE 124 n 124 ILE 124 A PRO 125 n 125 PRO 125 A VAL 126 n 126 VAL 126 A GLY 127 n 127 GLY 127 A GLU 128 n 128 GLU 128 A ILE 129 n 129 ILE 129 A TYR 130 n 130 TYR 130 A LYS 131 n 131 LYS 131 A ARG 132 n 132 ARG 132 A TRP 133 n 133 TRP 133 A ILE 134 n 134 ILE 134 A ILE 135 n 135 ILE 135 A LEU 136 n 136 LEU 136 A GLY 137 n 137 GLY 137 A LEU 138 n 138 LEU 138 A ASN 139 n 139 ASN 139 A LYS 140 n 140 LYS 140 A ILE 141 n 141 ILE 141 A VAL 142 n 142 VAL 142 A ARG 143 n 143 ARG 143 A MET 144 n 144 MET 144 A TYR 145 n 145 TYR 145 A SER 146 n 146 SER 146 A PRO 147 n 147 PRO 147 A THR 148 n 148 THR 148 A SER 149 n 149 SER 149 A ILE 150 n 150 ILE 150 A LEU 151 n 151 LEU 151 A ASP 152 n 152 ASP 152 A ILE 153 n 153 ILE 153 A ARG 154 n 154 ARG 154 A GLN 155 n 155 GLN 155 A GLY 156 n 156 GLY 156 A PRO 157 n 157 PRO 157 A LYS 158 n 158 LYS 158 A GLU 159 n 159 GLU 159 A PRO 160 n 160 PRO 160 A PHE 161 n 161 PHE 161 A ARG 162 n 162 ARG 162 A ASP 163 n 163 ASP 163 A TYR 164 n 164 TYR 164 A VAL 165 n 165 VAL 165 A ASP 166 n 166 ASP 166 A ARG 167 n 167 ARG 167 A PHE 168 n 168 PHE 168 A TYR 169 n 169 TYR 169 A LYS 170 n 170 LYS 170 A THR 171 n 171 THR 171 A LEU 172 n 172 LEU 172 A ARG 173 n 173 ARG 173 A ALA 174 n 174 ALA 174 A GLU 175 n 175 GLU 175 A GLN 176 n 176 GLN 176 A ALA 177 n 177 ALA 177 A SER 178 n 178 SER 178 A GLN 179 n 179 GLN 179 A GLU 180 n 180 GLU 180 A VAL 181 n 181 VAL 181 A LYS 182 n 182 LYS 182 A ASN 183 n 183 ASN 183 A TRP 184 n 184 TRP 184 A MET 185 n 185 MET 185 A THR 186 n 186 THR 186 A GLU 187 n 187 GLU 187 A THR 188 n 188 THR 188 A LEU 189 n 189 LEU 189 A LEU 190 n 190 LEU 190 A VAL 191 n 191 VAL 191 A GLN 192 n 192 GLN 192 A ASN 193 n 193 ASN 193 A ALA 194 n 194 ALA 194 A ASN 195 n 195 ASN 195 A PRO 196 n 196 PRO 196 A ASP 197 n 197 ASP 197 A CYS 198 n 198 CYS 198 A LYS 199 n 199 LYS 199 A THR 200 n 200 THR 200 A ILE 201 n 201 ILE 201 A LEU 202 n 202 LEU 202 A LYS 203 n 203 LYS 203 A ALA 204 n 204 ALA 204 A LEU 205 n 205 LEU 205 A GLY 206 n 206 GLY 206 A PRO 207 n 207 PRO 207 A GLY 208 n 208 GLY 208 A ALA 209 n 209 ALA 209 A THR 210 n 210 THR 210 A LEU 211 n 211 LEU 211 A GLU 212 n 212 GLU 212 A GLU 213 n 213 GLU 213 A MET 214 n 214 MET 214 A MET 215 n 215 MET 215 A THR 216 n 216 THR 216 A ALA 217 n 217 ALA 217 A CYS 218 n 218 CYS 218 A GLN 219 n 219 GLN 219 A GLY 220 n 220 GLY 220 A VAL 221 n 221 VAL 221 A n 222 222 A n 223 223 A n 224 224 A n 225 225 A n 226 226 A n 227 227 A n 228 228 A n 229 229 A n 230 230 A n 231 231 A 0.1286 0.2966 0.0825 0.1409 -0.3105 -0.0077 1.9205 -0.7484 -0.7953 2.3307 1.2100 2.1615 -0.8441 -0.4647 0.0070 1.4003 0.0968 0.0211 0.8926 0.0869 0.9478 refined -1.5768 -12.3696 15.2179 X-RAY DIFFRACTION 0.5819 -0.7765 0.2860 0.2579 0.5844 1.0173 -0.1660 0.7247 0.8323 -0.0214 -0.0268 -0.2850 -0.7533 0.0146 -0.0001 0.5363 -0.0047 -0.0356 0.7492 0.1185 0.8585 refined 2.8479 -17.0688 -3.4882 X-RAY DIFFRACTION 1.2666 -0.4759 -0.3262 2.2620 -0.0058 1.9868 -0.2256 0.0686 0.1707 0.4640 -0.1787 -0.1673 0.4836 -0.0468 0.0001 0.4866 -0.0200 0.0673 0.4218 0.0409 0.4868 refined -3.5287 -29.5493 3.2584 X-RAY DIFFRACTION -0.1651 0.2833 -0.4170 -0.0854 0.0269 1.7600 0.0020 -0.3633 -0.4782 0.5642 -0.1254 0.1524 -0.6407 -0.1525 0.0000 1.0798 -0.0708 0.0004 0.6757 0.0139 0.6014 refined -6.7039 -29.4263 20.5225 X-RAY DIFFRACTION 1.4047 -0.4302 -0.9952 0.9510 1.6793 1.9562 -0.1934 0.5552 -0.3343 -0.1698 -0.1041 0.0529 0.0079 -0.4557 -0.0001 0.5068 0.0447 -0.0036 0.5878 0.1442 0.5748 refined 14.3696 -28.0746 -8.9530 X-RAY DIFFRACTION 0.0229 0.3111 -0.0901 1.0978 -0.0615 0.2542 0.3460 -0.3621 1.2063 0.4299 -0.0709 -0.2456 0.7669 0.7160 0.0004 0.6276 0.1569 -0.0194 0.7175 0.0851 0.7175 refined 24.3490 -34.6305 -6.9274 X-RAY DIFFRACTION 0.9638 0.0422 -1.4779 1.1527 -0.2224 0.7817 -0.3022 0.0237 0.2965 -0.5845 -0.0636 -0.2145 0.4146 1.7209 -0.0012 0.6365 0.1824 0.0699 1.0360 0.1167 0.6502 refined 35.7375 -25.3444 -15.0095 X-RAY DIFFRACTION A 1 A 16 X-RAY DIFFRACTION 1 chain 'A' and (resid 1 through 16 ) A 17 A 44 X-RAY DIFFRACTION 2 chain 'A' and (resid 17 through 44 ) A 45 A 83 X-RAY DIFFRACTION 3 chain 'A' and (resid 45 through 83 ) A 84 A 125 X-RAY DIFFRACTION 4 chain 'A' and (resid 84 through 125 ) A 126 A 174 X-RAY DIFFRACTION 5 chain 'A' and (resid 126 through 174 ) A 175 A 192 X-RAY DIFFRACTION 6 chain 'A' and (resid 175 through 192 ) A 193 A 221 X-RAY DIFFRACTION 7 chain 'A' and (resid 193 through 221 ) author_and_software_defined_assembly PISA 6 hexameric none 29720 -471 58760 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 5_555 y,-x+y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_555 x-y,x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 3 A N VAL 3 A O VAL 11 A O VAL 11 1 A CG GLN 9 A CG GLN 9 1 Y 1 A CD GLN 9 A CD GLN 9 1 Y 1 A OE1 GLN 9 A OE1 GLN 9 1 Y 1 A NE2 GLN 9 A NE2 GLN 9 1 Y 1 A ASN 5 A ASN 5 1 Y 1 A LEU 6 A LEU 6 1 Y 1 A GLN 7 A GLN 7 1 Y 1 A GLY 8 A GLY 8 1 Y 1 A GLY 222 A GLY 222 1 Y 1 A GLY 223 A GLY 223 1 Y 1 A PRO 224 A PRO 224 1 Y 1 A GLY 225 A GLY 225 1 Y 1 A HIS 226 A HIS 226 1 Y 1 A LYS 227 A LYS 227 1 Y 1 A ALA 228 A ALA 228 1 Y 1 A ARG 229 A ARG 229 1 Y 1 A VAL 230 A VAL 230 1 Y 1 A LEU 231 A LEU 231 1 Y 1 A ALA 31 54.95 -105.46 174.510 79.5318 37.800 0.2433 0.2237 0.2247 2.4000 46.700 500 10446 4.7900 94.1500 0.3000 1 FREE R-VALUE 1.350 MOLECULAR REPLACEMENT 31.5500 0.9000 1.1100 4XFX 2.4000 46.700 41 1746 92.03 67.19 15 0 1690 217 0.002 1732 0.474 2354 0.038 264 0.004 305 9.193 1066 0.3296 0.0000 0.3011 2.6419 131 2505 2636 4 96.0000 0.3136 0.0000 0.2911 3.0241 104 2519 2623 4 95.0000 0.2508 0.0000 0.2433 3.8098 124 2465 2589 4 94.0000 0.2194 0.0000 0.1898 46.7099 141 2457 2598 4 92.0000 60.440 2.400 46.700 6AXT 10448 0.999 0.071 0.026 0.075 1 17.700 86620 8.300 0 94.100 1.313 2.400 2.490 1099 0.490 0.490 1.406 1 8.100 95.200 0.042 8.980 46.700 205 0.998 0.016 0.046 1 7.600 88.900 data scaling Aimless 0.5.17 data collection Blu-Ice refinement PHENIX 1.11.1-2575_1692 data extraction PDB_EXTRACT 3.22 data reduction Aimless 0.5.17 phasing PHASER 2.5.7 N Structure of the T58S/T107I/P122A mutant of the HIV-1 capsid protein 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N A SER 16 A SER 16 HELX_P A ALA 31 A ALA 31 1 AA1 16 A GLU 35 A GLU 35 HELX_P A SER 44 A SER 44 1 AA2 10 A THR 48 A THR 48 HELX_P A SER 58 A SER 58 1 AA3 11 A HIS 62 A HIS 62 HELX_P A HIS 84 A HIS 84 1 AA4 23 A ARG 100 A ARG 100 HELX_P A ALA 105 A ALA 105 1 AA5 6 A THR 110 A THR 110 HELX_P A HIS 120 A HIS 120 1 AA6 11 A PRO 125 A PRO 125 HELX_P A TYR 145 A TYR 145 1 AA7 21 A SER 149 A SER 149 HELX_P A ILE 153 A ILE 153 5 AA8 5 A PRO 160 A PRO 160 HELX_P A GLU 175 A GLU 175 1 AA9 16 A SER 178 A SER 178 HELX_P A ASN 193 A ASN 193 1 AB1 16 A ASN 195 A ASN 195 HELX_P A ALA 204 A ALA 204 1 AB2 10 A THR 210 A THR 210 HELX_P A GLN 219 A GLN 219 1 AB3 10 disulf 2.037 A A CYS 198 A SG CYS 198 1_555 A CYS 218 A SG CYS 218 1_555 VIRAL PROTEIN HIV-1 capsid protein, hexamer, T58S/T107I/P122A mutant, VIRAL PROTEIN B6DRA0_9HIV1 UNP 1 133 B6DRA0 PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEW DRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEP FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL 133 363 6AXT 1 231 B6DRA0 A 1 1 231 1 THR engineered mutation SER 58 6AXT A B6DRA0 UNP 190 58 1 THR engineered mutation ILE 107 6AXT A B6DRA0 UNP 239 107 1 PRO engineered mutation ALA 122 6AXT A B6DRA0 UNP 254 122 2 anti-parallel A ILE 2 A ILE 2 A VAL 3 A VAL 3 A VAL 11 A VAL 11 A HIS 12 A HIS 12 binding site for residue IOD A 301 A IOD 301 Software 4 binding site for residue IOD A 303 A IOD 303 Software 1 binding site for residue IOD A 304 A IOD 304 Software 1 binding site for residue IOD A 306 A IOD 306 Software 1 binding site for residue IOD A 307 A IOD 307 Software 1 binding site for residue IOD A 308 A IOD 308 Software 1 binding site for residue IOD A 309 A IOD 309 Software 1 binding site for residue CL A 310 A CL 310 Software 3 binding site for residue CL A 311 A CL 311 Software 2 binding site for residue CL A 313 A CL 313 Software 3 binding site for residue CL A 314 A CL 314 Software 2 binding site for residue CL A 315 A CL 315 Software 3 A ALA 92 A ALA 92 4 6_554 A GLN 95 A GLN 95 4 6_554 A PRO 157 A PRO 157 4 1_555 A LYS 158 A LYS 158 4 1_555 A MET 144 A MET 144 1 6_555 A ASN 57 A ASN 57 1 6_555 A ARG 18 A ARG 18 1 1_555 A PRO 17 A PRO 17 1 1_555 A ASN 74 A ASN 74 1 1_555 A ASN 21 A ASN 21 1 1_555 A PHE 161 A PHE 161 3 1_555 A ARG 162 A ARG 162 3 1_555 A HOH 419 Q HOH 3 1_555 A ILE 129 A ILE 129 2 1_555 A HOH 441 Q HOH 2 1_555 A PRO 38 A PRO 38 3 1_555 A ARG 173 A ARG 173 3 1_555 A HOH 413 Q HOH 3 1_555 A GLY 60 A GLY 60 2 1_555 A HIS 62 A HIS 62 2 1_555 A ALA 31 A ALA 31 3 1_555 A PHE 32 A PHE 32 3 1_555 A TYR 145 A TYR 145 3 1_555 168 P 6