1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Cameron, A.J. Ewdards, P.J.B. Harjes, E. Sarojini, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C7 H7 N O2 137.136 2-AMINOBENZOIC ACID L-peptide linking C9 H11 N O2 165.189 D-PHENYLALANINE D-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H12 N2 O2 132.161 n L-ornithine L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N N N 9 N O N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N C N 19 N O N 20 N O Y 21 N C Y 22 N C Y 23 N C N 24 N N Y 25 N C Y 26 N C Y 27 N C N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N N N 36 R C N 37 N C N 38 N O N 39 N O N 40 N C Y 41 N C Y 42 N C Y 43 N C Y 44 N C Y 45 N C Y 46 N C N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N C N 65 N C N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 S C N 82 N C N 83 N O N 84 N C N 85 N C N 86 N C N 87 N C N 88 N N N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N C N 109 N C N 110 N N N 111 N C N 112 N O N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C Y 131 N C Y 132 N C Y 133 N C Y 134 N C Y 135 N C Y 136 N C N 137 N O N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 S C N 151 N C N 152 N O N 153 N C Y 154 N C Y 155 N C Y 156 N C Y 157 N C Y 158 N C Y 159 N C N 160 N O N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N N N 174 S C N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N sing Y 21 N doub Y 22 N sing Y 23 N sing N 24 N sing Y 25 N doub N 26 N sing N 27 N sing N 28 N sing Y 29 N sing N 30 N sing Y 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing Y 46 N doub Y 47 N sing Y 48 N sing N 49 N sing Y 50 N doub N 51 N sing Y 52 N doub N 53 N sing Y 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing Y 133 N doub Y 134 N sing Y 135 N sing N 136 N sing Y 137 N doub N 138 N sing Y 139 N doub N 140 N sing Y 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing Y 156 N doub Y 157 N sing Y 158 N sing N 159 N sing Y 160 N doub N 161 N sing Y 162 N doub N 163 N sing Y 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing US J. Med. Chem. JMCMAR 0151 1520-4804 60 9565 9574 10.1021/acs.jmedchem.7b00953 29140694 Tyrocidine A Analogues Bearing the Planar d-Phe-2-Abz Turn Motif: How Conformation Impacts Bioactivity. 2017 10.2210/pdb6b35/pdb pdb_00006b35 1311.548 Tyrocidine A analogue D-PHE-BE2-PHE-D-PHE-ASN-LYS-TYR-VAL-ORN-LEU 1 syn polymer no yes (DPN)(BE2)F(DPN)NKYV(ORN)L FXFFNKYVAL A polypeptide(L) n n n n n n n n n n citation atom_site pdbx_molecule_features pdbx_nmr_spectrometer struct_conn database_2 pdbx_database_status atom_site chem_comp_atom chem_comp_bond pdbx_validate_rmsd_angle pdbx_validate_torsion struct_conn repository Initial release Database references Atomic model Data collection Derived calculations Structure summary Database references Other Atomic model Data collection Derived calculations 1 0 2017-12-06 1 1 2017-12-27 2 0 2020-08-12 2 1 2023-06-14 3 0 2023-11-15 _citation.journal_volume _citation.page_first _citation.page_last _atom_site.auth_atom_id _atom_site.label_atom_id _pdbx_nmr_spectrometer.model _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _atom_site.auth_atom_id _atom_site.label_atom_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr2_label_atom_id NMR ensemble of Tyrocidine A analogue AC3.28 N RCSB Y RCSB 2017-09-20 REL REL REL REL Synthetic analogue of tyrocidine A. Sequence is altered at 2 positions relative to natural product. 1393 Brevibacillus brevis sample 1 10 Tyrocidine kills bacteria by interacting with their cytoplasmic membrane and causing leakage of their intracellular content. It also affects intracellular membranes such as those of mitochondria Antibiotic Tyrocidine A analogue (DPN)(BE2)F(DPN)NKYV(ORN)L Cyclic peptide structures with acceptable covalent geometry 10 8 isotropic 1 2D 1H-15N HSQC isotropic 1 2D 1H-1H TOCSY isotropic 1 2D 1H-1H COSY isotropic 1 2D 1H-1H NOESY 0.8 mM None 0 Not defined conditions_1 6 2 pH 1 atm 298 K simulated annealing 1 lowest energy 0.8 mM None D-PHE-ABZ-PHE-D-PHE-ASN-LYS-TYR-VAL-ORN-LEU, 50% H20 /50% MeCN AC3.28 50% H20 /50% MeCN solution E.KRIGER refinement YASARA structure solution ANALYSIS 700 Bruker AVANCE DPN 1 n 1 DPN 1 A BE2 2 n 2 BE2 2 A PHE 3 n 3 PHE 3 A DPN 4 n 4 DPN 4 A ASN 5 n 5 ASN 5 A LYS 6 n 6 LYS 6 A TYR 7 n 7 TYR 7 A VAL 8 n 8 VAL 8 A ORN 9 n 9 ORN 9 A LEU 10 n 10 LEU 10 A author_defined_assembly 1 monomeric none 220 1 1430 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 27.06 2.20 117.20 144.26 A A A CA C N BE2 BE2 PHE 2 2 3 Y 2 27.21 2.20 117.20 144.41 A A A CA C N BE2 BE2 PHE 2 2 3 Y 3 25.95 2.20 117.20 143.15 A A A CA C N BE2 BE2 PHE 2 2 3 Y 4 27.33 2.20 117.20 144.53 A A A CA C N BE2 BE2 PHE 2 2 3 Y 5 26.83 2.20 117.20 144.03 A A A CA C N BE2 BE2 PHE 2 2 3 Y 6 26.58 2.20 117.20 143.78 A A A CA C N BE2 BE2 PHE 2 2 3 Y 7 26.42 2.20 117.20 143.62 A A A CA C N BE2 BE2 PHE 2 2 3 Y 8 26.35 2.20 117.20 143.55 A A A CA C N BE2 BE2 PHE 2 2 3 Y 1 A DPN 4 -85.34 -127.87 1 A ASN 5 -125.17 -163.53 2 A BE2 2 -175.55 -178.89 2 A DPN 4 -85.00 -124.14 3 A BE2 2 172.88 -166.88 3 A DPN 4 -85.06 -128.74 4 A BE2 2 -173.37 -174.11 4 A DPN 4 -85.14 -119.86 4 A LYS 6 -67.21 0.57 5 A DPN 4 -85.47 -123.16 6 A DPN 4 -84.88 -138.38 7 A BE2 2 -176.53 -180.00 7 A DPN 4 -85.32 -122.05 8 A DPN 4 -84.82 -105.30 8 A TYR 7 -126.92 -51.12 N NMR ensemble of Tyrocidine A analogue AC3.28 1 N N covale 1.396 both A DPN 1 A C DPN 1 1_555 A BE2 2 A N BE2 2 1_555 covale 1.335 both A DPN 1 A N DPN 1 1_555 A LEU 10 A C LEU 10 1_555 covale 1.383 both A BE2 2 A C BE2 2 1_555 A PHE 3 A N PHE 3 1_555 covale 1.333 both A PHE 3 A C PHE 3 1_555 A DPN 4 A N DPN 4 1_555 covale 1.323 both A DPN 4 A C DPN 4 1_555 A ASN 5 A N ASN 5 1_555 covale 1.334 both A VAL 8 A C VAL 8 1_555 A ORN 9 A N ORN 9 1_555 covale 1.338 both A ORN 9 A C ORN 9 1_555 A LEU 10 A N LEU 10 1_555 ANTIMICROBIAL PROTEIN Tyrocidine A Antimicrobial peptide AMP Cyclic peptide 2-aminobenzoic acid 2-Abz Anthranilic acid, ANTIMICROBIAL PROTEIN 6B35 PDB 1 1 6B35 1 10 6B35 1 10 6B35 A 1 1 10