0.017364
0.000000
0.000000
0.000000
0.011667
0.000000
0.000000
0.000000
0.021478
0.00000
0.00000
0.00000
Su, H.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
57.590
85.710
46.560
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C33 H32 F3 N3 O3 S
607.686
(S)-N-(3-fluoro-2-(2-(1-(phenylsulfonyl)piperazin-2-yl)ethyl)phenyl)-3,3-bis(4-fluorophenyl)propanamide
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
S
C
Y
75
N
C
Y
76
N
C
Y
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
N
84
N
C
N
85
N
C
Y
86
N
C
Y
87
N
C
N
88
N
F
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
N
98
N
F
Y
99
N
C
N
100
N
C
N
101
N
O
N
102
N
N
Y
103
N
C
Y
104
N
C
Y
105
N
C
N
106
N
F
N
107
N
C
N
108
N
N
N
109
N
N
N
110
N
C
N
111
N
S
N
112
N
O
N
113
N
O
Y
114
N
C
Y
115
N
C
Y
116
N
C
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
CL
N
150
N
N
N
151
R
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
S
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
N
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
O
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
Y
218
N
C
Y
219
N
N
Y
220
N
C
Y
221
N
C
Y
222
N
N
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
S
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
S
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
N
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
Y
71
N
doub
Y
72
N
sing
Y
73
N
sing
Y
74
N
doub
Y
75
N
doub
Y
76
N
sing
N
77
N
sing
Y
78
N
doub
Y
79
N
sing
N
80
N
sing
Y
81
N
sing
Y
82
N
doub
Y
83
N
doub
Y
84
N
sing
N
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
Y
89
N
sing
Y
90
N
doub
N
91
N
sing
Y
92
N
doub
N
93
N
doub
Y
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
doub
Y
111
N
sing
Y
112
N
sing
Y
113
N
doub
N
114
N
sing
Y
115
N
doub
Y
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
doub
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
US
ACS Med Chem Lett
1948-5875
8
1292
1297
10.1021/acsmedchemlett.7b00386
29259750
Design and Synthesis of Piperazine Sulfonamide Cores Leading to Highly Potent HIV-1 Protease Inhibitors.
2017
10.2210/pdb6b36/pdb
pdb_00006b36
100
1
PIXEL
2017-03-15
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
17-ID
APS
1
SYNCHROTRON
APS BEAMLINE 17-ID
10804.808
HIV-1 Protease
3.4.23.16
2
man
polymer
35.453
CHLORIDE ION
4
syn
non-polymer
607.686
(S)-N-(3-fluoro-2-(2-(1-(phenylsulfonyl)piperazin-2-yl)ethyl)phenyl)-3,3-bis(4-fluorophenyl)propanamide
1
syn
non-polymer
18.015
water
147
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1
sample
1
99
gag-pol
11676
Human immunodeficiency virus 1
11676
Human immunodeficiency virus 1
Biological sequence
1
2.66
53.74
VAPOR DIFFUSION, HANGING DROP
100 mM sodium acetate, pH 5.0-5.5
300-500mM NaCl
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2018-01-03
1
1
2023-10-04
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
RCSB
2017-09-21
REL
REL
CL
CHLORIDE ION
CKD
(S)-N-(3-fluoro-2-(2-(1-(phenylsulfonyl)piperazin-2-yl)ethyl)phenyl)-3,3-bis(4-fluorophenyl)propanamide
HOH
water
5IVT
PDB
experimental model
CL
1
2
CL
CL
101
A
MRK
100
3
CKD
CKD
101
B
CL
2
2
CL
CL
102
B
CL
3
2
CL
CL
103
B
CL
4
2
CL
CL
104
B
HOH
82
4
HOH
HOH
201
A
HOH
136
4
HOH
HOH
202
A
HOH
137
4
HOH
HOH
203
A
HOH
70
4
HOH
HOH
204
A
HOH
115
4
HOH
HOH
205
A
HOH
106
4
HOH
HOH
206
A
HOH
88
4
HOH
HOH
207
A
HOH
109
4
HOH
HOH
208
A
HOH
101
4
HOH
HOH
209
A
HOH
79
4
HOH
HOH
210
A
HOH
35
4
HOH
HOH
211
A
HOH
8
4
HOH
HOH
212
A
HOH
99
4
HOH
HOH
213
A
HOH
119
4
HOH
HOH
214
A
HOH
1
4
HOH
HOH
215
A
HOH
34
4
HOH
HOH
216
A
HOH
113
4
HOH
HOH
217
A
HOH
12
4
HOH
HOH
218
A
HOH
100
4
HOH
HOH
219
A
HOH
4
4
HOH
HOH
220
A
HOH
147
4
HOH
HOH
221
A
HOH
51
4
HOH
HOH
222
A
HOH
30
4
HOH
HOH
223
A
HOH
45
4
HOH
HOH
224
A
HOH
2
4
HOH
HOH
225
A
HOH
25
4
HOH
HOH
226
A
HOH
143
4
HOH
HOH
227
A
HOH
22
4
HOH
HOH
228
A
HOH
98
4
HOH
HOH
229
A
HOH
92
4
HOH
HOH
230
A
HOH
56
4
HOH
HOH
231
A
HOH
43
4
HOH
HOH
232
A
HOH
95
4
HOH
HOH
233
A
HOH
15
4
HOH
HOH
234
A
HOH
39
4
HOH
HOH
235
A
HOH
62
4
HOH
HOH
236
A
HOH
103
4
HOH
HOH
237
A
HOH
89
4
HOH
HOH
238
A
HOH
10
4
HOH
HOH
239
A
HOH
140
4
HOH
HOH
240
A
HOH
33
4
HOH
HOH
241
A
HOH
29
4
HOH
HOH
242
A
HOH
64
4
HOH
HOH
243
A
HOH
54
4
HOH
HOH
244
A
HOH
21
4
HOH
HOH
245
A
HOH
76
4
HOH
HOH
246
A
HOH
80
4
HOH
HOH
247
A
HOH
16
4
HOH
HOH
248
A
HOH
104
4
HOH
HOH
249
A
HOH
50
4
HOH
HOH
250
A
HOH
107
4
HOH
HOH
251
A
HOH
111
4
HOH
HOH
252
A
HOH
85
4
HOH
HOH
253
A
HOH
126
4
HOH
HOH
254
A
HOH
65
4
HOH
HOH
255
A
HOH
110
4
HOH
HOH
256
A
HOH
71
4
HOH
HOH
257
A
HOH
94
4
HOH
HOH
258
A
HOH
67
4
HOH
HOH
259
A
HOH
120
4
HOH
HOH
260
A
HOH
97
4
HOH
HOH
261
A
HOH
105
4
HOH
HOH
262
A
HOH
108
4
HOH
HOH
263
A
HOH
96
4
HOH
HOH
264
A
HOH
123
4
HOH
HOH
265
A
HOH
139
4
HOH
HOH
266
A
HOH
118
4
HOH
HOH
267
A
HOH
117
4
HOH
HOH
268
A
HOH
142
4
HOH
HOH
201
B
HOH
41
4
HOH
HOH
202
B
HOH
18
4
HOH
HOH
203
B
HOH
141
4
HOH
HOH
204
B
HOH
28
4
HOH
HOH
205
B
HOH
23
4
HOH
HOH
206
B
HOH
59
4
HOH
HOH
207
B
HOH
44
4
HOH
HOH
208
B
HOH
53
4
HOH
HOH
209
B
HOH
7
4
HOH
HOH
210
B
HOH
133
4
HOH
HOH
211
B
HOH
91
4
HOH
HOH
212
B
HOH
114
4
HOH
HOH
213
B
HOH
131
4
HOH
HOH
214
B
HOH
24
4
HOH
HOH
215
B
HOH
90
4
HOH
HOH
216
B
HOH
47
4
HOH
HOH
217
B
HOH
78
4
HOH
HOH
218
B
HOH
5
4
HOH
HOH
219
B
HOH
3
4
HOH
HOH
220
B
HOH
134
4
HOH
HOH
221
B
HOH
52
4
HOH
HOH
222
B
HOH
6
4
HOH
HOH
223
B
HOH
146
4
HOH
HOH
224
B
HOH
124
4
HOH
HOH
225
B
HOH
11
4
HOH
HOH
226
B
HOH
9
4
HOH
HOH
227
B
HOH
49
4
HOH
HOH
228
B
HOH
14
4
HOH
HOH
229
B
HOH
42
4
HOH
HOH
230
B
HOH
68
4
HOH
HOH
231
B
HOH
58
4
HOH
HOH
232
B
HOH
83
4
HOH
HOH
233
B
HOH
46
4
HOH
HOH
234
B
HOH
86
4
HOH
HOH
235
B
HOH
74
4
HOH
HOH
236
B
HOH
27
4
HOH
HOH
237
B
HOH
72
4
HOH
HOH
238
B
HOH
63
4
HOH
HOH
239
B
HOH
122
4
HOH
HOH
240
B
HOH
36
4
HOH
HOH
241
B
HOH
55
4
HOH
HOH
242
B
HOH
20
4
HOH
HOH
243
B
HOH
48
4
HOH
HOH
244
B
HOH
26
4
HOH
HOH
245
B
HOH
121
4
HOH
HOH
246
B
HOH
57
4
HOH
HOH
247
B
HOH
31
4
HOH
HOH
248
B
HOH
73
4
HOH
HOH
249
B
HOH
13
4
HOH
HOH
250
B
HOH
17
4
HOH
HOH
251
B
HOH
66
4
HOH
HOH
252
B
HOH
84
4
HOH
HOH
253
B
HOH
135
4
HOH
HOH
254
B
HOH
69
4
HOH
HOH
255
B
HOH
19
4
HOH
HOH
256
B
HOH
132
4
HOH
HOH
257
B
HOH
130
4
HOH
HOH
258
B
HOH
61
4
HOH
HOH
259
B
HOH
37
4
HOH
HOH
260
B
HOH
127
4
HOH
HOH
261
B
HOH
145
4
HOH
HOH
262
B
HOH
75
4
HOH
HOH
263
B
HOH
102
4
HOH
HOH
264
B
HOH
116
4
HOH
HOH
265
B
HOH
87
4
HOH
HOH
266
B
HOH
93
4
HOH
HOH
267
B
HOH
40
4
HOH
HOH
268
B
HOH
32
4
HOH
HOH
269
B
HOH
138
4
HOH
HOH
270
B
HOH
38
4
HOH
HOH
271
B
HOH
77
4
HOH
HOH
272
B
HOH
129
4
HOH
HOH
273
B
HOH
125
4
HOH
HOH
274
B
HOH
60
4
HOH
HOH
275
B
HOH
112
4
HOH
HOH
276
B
HOH
128
4
HOH
HOH
277
B
HOH
81
4
HOH
HOH
278
B
HOH
144
4
HOH
HOH
279
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
ILE
33
n
33
ILE
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
CYS
95
n
95
CYS
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
4510
-59
9710
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
ASN
98
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
45
A
N
LYS
45
A
O
VAL
56
A
O
VAL
56
A
N
ILE
64
A
N
ILE
64
A
O
ALA
71
A
O
ALA
71
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
GLY
49
B
N
GLY
49
B
O
GLY
52
B
O
GLY
52
B
N
ILE
62
B
N
ILE
62
B
O
GLY
73
B
O
GLY
73
B
O
LEU
76
B
O
LEU
76
B
N
ILE
33
B
N
ILE
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
ALA
22
B
O
ALA
22
B
N
VAL
11
B
N
VAL
11
B
N
LYS
14
B
N
LYS
14
B
O
GLU
65
B
O
GLU
65
1
B
GLU
35
-37.21
124.73
26.43
-1.74390
0.00000
0.00000
2.23900
0.00000
-0.49510
0.959
0.956
0.202
0.182
0.183
1.63
19.31
1326
26221
5.060
89.0
0.092
RANDOM
1
THROUGHOUT
0.000
FOURIER SYNTHESIS
0.096
0.090
0.087
5ivt
0.21
1.63
19.31
147
1710
47
0
1516
0.010
1604
HARMONIC
2.00
1.12
2180
HARMONIC
2.00
572
SINUSOIDAL
2.00
34
HARMONIC
8.00
255
HARMONIC
8.00
1604
HARMONIC
20.00
2.71
14.26
222
SEMIHARMONIC
5.00
1890
SEMIHARMONIC
4.00
0.2524
0.2115
0.2133
1.70
1893
1989
13
4.83
60.50
24.25
1.631
19.31
6B36
153989
1
19.3
5.9
89.3
1
refinement
BUSTER
2.11.7
data reduction
XDS
data scaling
Aimless
phasing
BUSTER
N
Crystal Structure of HIV Protease complexed with (S)-N-(3-fluoro-2-(2-(1-(phenylsulfonyl)piperazin-2-yl)ethyl)phenyl)-3,3-bis(4-fluorophenyl)propanamide
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
2
N
N
2
N
N
4
N
N
4
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
AA1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
AA2
3
B
GLY
86
B
GLY
86
HELX_P
B
ILE
93
B
ILE
93
1
AA3
8
VIRAL PROTEIN/INHIBITOR
HIV, protease, VIRAL PROTEIN, VIRAL PROTEIN-INHIBITOR complex
POL_HV1B5
UNP
1
501
P04587
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
501
599
6B36
1
99
P04587
A
1
1
99
501
599
6B36
1
99
P04587
B
1
1
99
1
GLN
conflict
LYS
7
6B36
A
P04587
UNP
507
7
1
LEU
conflict
ILE
33
6B36
A
P04587
UNP
533
33
1
LEU
conflict
ILE
63
6B36
A
P04587
UNP
563
63
2
GLN
conflict
LYS
7
6B36
B
P04587
UNP
507
7
2
LEU
conflict
ILE
33
6B36
B
P04587
UNP
533
33
2
LEU
conflict
ILE
63
6B36
B
P04587
UNP
563
63
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
TRP
42
A
TRP
42
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
VAL
32
A
VAL
32
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
ILE
33
B
ILE
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
binding site for residue CL A 101
A
CL
101
Software
4
binding site for residue CKD B 101
B
CKD
101
Software
20
binding site for residue CL B 102
B
CL
102
Software
3
binding site for residue CL B 103
B
CL
103
Software
1
binding site for residue CL B 104
B
CL
104
Software
3
A
THR
74
A
THR
74
4
1_555
A
ASN
88
A
ASN
88
4
1_555
A
HOH
261
H
HOH
4
1_555
B
ARG
41
B
ARG
41
4
3_445
A
ARG
8
A
ARG
8
20
1_555
A
ASP
25
A
ASP
25
20
1_555
A
GLY
27
A
GLY
27
20
1_555
A
GLY
48
A
GLY
48
20
1_555
A
GLY
49
A
GLY
49
20
1_555
A
ILE
50
A
ILE
50
20
1_555
A
VAL
82
A
VAL
82
20
1_555
A
ILE
84
A
ILE
84
20
1_555
A
HOH
233
H
HOH
20
1_555
B
ASP
25
B
ASP
25
20
1_555
B
GLY
27
B
GLY
27
20
1_555
B
ALA
28
B
ALA
28
20
1_555
B
ASP
29
B
ASP
29
20
1_555
B
ASP
30
B
ASP
30
20
1_555
B
VAL
32
B
VAL
32
20
1_555
B
GLY
48
B
GLY
48
20
1_555
B
GLY
49
B
GLY
49
20
1_555
B
ILE
50
B
ILE
50
20
1_555
B
ILE
84
B
ILE
84
20
1_555
B
HOH
210
I
HOH
20
1_555
B
THR
74
B
THR
74
3
1_555
B
ASN
88
B
ASN
88
3
1_555
B
HOH
237
I
HOH
3
1_555
B
TRP
6
B
TRP
6
1
1_555
B
THR
12
B
THR
12
3
1_555
B
CYS
67
B
CYS
67
3
1_555
B
HOH
264
I
HOH
3
1_555
18
P 21 21 2