0.041203 0.000000 0.000000 0.000000 0.025240 0.000000 0.000000 0.000000 0.015731 0.00000 0.00000 0.00000 Kopka, M.L. Yoon, C. Goodsell, D. Pjura, P. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.270 39.620 63.570 C9 H13 Br N3 O7 P 386.093 n 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C18 H26 N10 O3 430.464 NETROPSIN non-polymer N 1 N BR N 2 N P N 3 N O N 4 N O N 5 N O N 6 N N N 7 N C N 8 N C N 9 N O N 10 N N N 11 N C N 12 N N N 13 N C N 14 N C N 15 N C N 16 R C N 17 N O N 18 R C N 19 S C N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C Y 51 N C N 52 N N Y 53 N N Y 54 N C Y 55 N N Y 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C N 83 N N N 84 N C N 85 N O N 86 N N N 87 N C N 88 N N N 89 N C N 90 N C N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N O N 106 N P N 107 N O N 108 N O N 109 N O N 110 N C N 111 R C N 112 N O N 113 S C N 114 N O N 115 N C N 116 R C Y 117 N N Y 118 N C Y 119 N N Y 120 N C N 121 N C N 122 N O N 123 N N N 124 N C N 125 N N N 126 N N Y 127 N C N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N P N 144 N O N 145 N O N 146 N O N 147 N C N 148 R C N 149 N O N 150 S C N 151 N O N 152 N C N 153 R C N 154 N N N 155 N C N 156 N O N 157 N N N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N O N 179 N H N 180 N H N 181 N C N 182 N N N 183 N N N 184 N N N 185 N C N 186 N C N 187 N O N 188 N N Y 189 N C Y 190 N C Y 191 N C Y 192 N N N 193 N C Y 194 N C N 195 N C N 196 N O N 197 N N Y 198 N C Y 199 N C Y 200 N C Y 201 N N N 202 N C Y 203 N C N 204 N C N 205 N O N 206 N N N 207 N C N 208 N C N 209 N C N 210 N N N 211 N N N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N doub N 14 N sing N 15 N doub N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N doub N 68 N sing N 69 N sing Y 70 N sing Y 71 N doub N 72 N sing Y 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing Y 132 N sing Y 133 N sing Y 134 N doub N 135 N sing Y 136 N sing N 137 N sing Y 138 N doub N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing Y 202 N sing Y 203 N doub Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing N 208 N sing Y 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing Y 218 N sing Y 219 N doub Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing N 224 N sing Y 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 183 553 563 10.1016/0022-2836(85)90171-8 2991536 Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G. 1985 Adenine Press,Guilderland,New York Structure and Motion. Membranes, Nucleic Acids and Protein. The Binding of Netropsin to Double-Helical B-DNA of Sequence C-G-C-G-A-A-T-T-BrC-G-C-G. Single Crystal X-Ray Structure Analysis US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 82 1376 1380 The Molecular Origin of DNA-Drug Specificity in Netropsin and Distamycin 1985 10.2210/pdb6bna/pdb pdb_00006bna 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 DIFFRACTOMETER x-ray 1 1.0 3742.288 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3') 2 syn polymer 430.464 NETROPSIN 1 syn non-polymer 18.015 water 75 nat water no yes (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(CBR)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.04 39.76 VAPOR DIFFUSION VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 MPD 1 SPERMINE_HCL 1 MG ACETATE 1 WATER 2 MPD 2 -5.504 1 19 A 1 B 24 -3.424 A_DC1:DG24_B 1 -15.807 0.365 -0.015 -0.274 -2.482 1 19 A 2 B 23 -0.561 A_DG2:DC23_B 2 -13.730 -0.452 0.125 -0.305 -3.993 1 19 A 3 B 22 2.481 A_DC3:DG22_B 3 -4.548 0.263 0.113 -0.181 8.690 1 19 A 4 B 21 1.757 A_DG4:CBR21_B 4 -5.783 -0.164 -0.182 -0.150 10.767 1 20 A 5 B 20 2.296 A_DA5:DT20_B 5 -19.744 0.604 0.252 -0.090 7.510 1 20 A 6 B 19 7.923 A_DA6:DT19_B 6 -20.948 -0.135 0.229 -0.120 -2.874 1 20 A 7 B 18 -0.685 A_DT7:DA18_B 7 -25.128 -0.079 0.021 -0.056 -14.620 1 20 A 8 B 17 3.769 A_DT8:DA17_B 8 -22.200 -0.290 0.321 0.086 -18.365 1 19 A 9 B 16 -2.986 A_CBR9:DG16_B 9 -17.342 0.264 0.213 -0.241 10.894 1 19 A 10 B 15 0.865 A_DG10:DC15_B 10 -9.155 -0.432 0.342 -0.101 -3.949 1 19 A 11 B 14 -4.874 A_DC11:DG14_B 11 -19.477 0.576 0.321 -0.345 -2.704 1 19 A 12 B 13 -4.922 A_DG12:DC13_B 12 2.572 0.356 -0.529 -0.207 3.412 30.662 A A 1 2 8.361 B B 24 23 3.413 4.388 -0.118 0.403 AA_DC1DG2:DC23DG24_BB 1 -4.897 9.331 29.965 -0.150 -0.796 3.109 46.128 A A 2 3 -13.635 B B 23 22 3.308 -10.588 0.955 0.836 AA_DG2DC3:DG22DC23_BB 2 3.618 -4.659 44.822 1.971 -0.911 3.117 27.768 A A 3 4 13.047 B B 22 21 3.129 6.177 -0.336 0.792 AA_DC3DG4:CBR21DG22_BB 3 5.000 -10.561 26.627 0.199 1.875 3.291 41.998 A A 4 5 -2.137 B B 21 20 3.299 -1.528 -0.090 -0.080 AA_DG4DA5:DT20CBR21_BB 4 -4.738 6.625 41.715 0.049 -0.372 3.063 33.668 A A 5 6 12.548 B B 20 19 3.161 7.213 0.178 -0.157 AA_DA5DA6:DT19DT20_BB 5 1.146 -1.993 32.889 -1.403 -0.128 3.417 32.234 A A 6 7 2.165 B B 19 18 3.427 1.201 -0.502 -0.512 AA_DA6DT7:DA18DT19_BB 6 -0.756 1.363 32.203 -1.146 0.764 3.587 37.309 A A 7 8 3.083 B B 18 17 3.587 1.972 0.128 0.088 AA_DT7DT8:DA17DA18_BB 7 0.008 -0.013 37.259 -0.149 -0.198 3.522 40.508 A A 8 9 -1.423 B B 17 16 3.535 -0.985 0.122 0.619 AA_DT8CBR9:DG16DA17_BB 8 1.249 -1.805 40.478 1.013 -0.026 2.847 26.034 A A 9 10 5.221 B B 16 15 2.786 2.347 0.091 0.941 AA_CBR9DG10:DC15DG16_BB 9 -1.677 3.730 25.876 1.534 -0.598 3.638 48.385 A A 10 11 -14.689 B B 15 14 3.918 -11.927 -0.638 0.828 AA_DG10DC11:DG14DC15_BB 10 -1.821 2.243 46.944 2.098 0.612 3.561 38.369 A A 11 12 -6.897 B B 14 13 3.566 -4.506 0.840 0.597 AA_DC11DG12:DC13DG14_BB 11 5.946 -9.101 37.664 1.527 -0.461 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1984-10-29 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y BNL 1984-08-30 REL REL NT NETROPSIN HOH water NT 25 2 NT NT 25 B HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 30 3 HOH HOH 30 A HOH 34 3 HOH HOH 34 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 42 3 HOH HOH 42 A HOH 46 3 HOH HOH 46 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 58 3 HOH HOH 58 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 72 3 HOH HOH 72 A HOH 73 3 HOH HOH 73 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 82 3 HOH HOH 82 A HOH 84 3 HOH HOH 84 A HOH 85 3 HOH HOH 85 A HOH 89 3 HOH HOH 89 A HOH 90 3 HOH HOH 90 A HOH 91 3 HOH HOH 91 A HOH 92 3 HOH HOH 92 A HOH 94 3 HOH HOH 94 A HOH 97 3 HOH HOH 97 A HOH 100 3 HOH HOH 100 A HOH 29 3 HOH HOH 29 B HOH 31 3 HOH HOH 31 B HOH 32 3 HOH HOH 32 B HOH 33 3 HOH HOH 33 B HOH 35 3 HOH HOH 35 B HOH 36 3 HOH HOH 36 B HOH 37 3 HOH HOH 37 B HOH 40 3 HOH HOH 40 B HOH 41 3 HOH HOH 41 B HOH 43 3 HOH HOH 43 B HOH 44 3 HOH HOH 44 B HOH 45 3 HOH HOH 45 B HOH 47 3 HOH HOH 47 B HOH 48 3 HOH HOH 48 B HOH 53 3 HOH HOH 53 B HOH 54 3 HOH HOH 54 B HOH 59 3 HOH HOH 59 B HOH 62 3 HOH HOH 62 B HOH 63 3 HOH HOH 63 B HOH 64 3 HOH HOH 64 B HOH 65 3 HOH HOH 65 B HOH 66 3 HOH HOH 66 B HOH 67 3 HOH HOH 67 B HOH 68 3 HOH HOH 68 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 71 3 HOH HOH 71 B HOH 74 3 HOH HOH 74 B HOH 75 3 HOH HOH 75 B HOH 76 3 HOH HOH 76 B HOH 77 3 HOH HOH 77 B HOH 80 3 HOH HOH 80 B HOH 81 3 HOH HOH 81 B HOH 83 3 HOH HOH 83 B HOH 86 3 HOH HOH 86 B HOH 87 3 HOH HOH 87 B HOH 88 3 HOH HOH 88 B HOH 93 3 HOH HOH 93 B HOH 95 3 HOH HOH 95 B HOH 96 3 HOH HOH 96 B HOH 98 3 HOH HOH 98 B HOH 99 3 HOH HOH 99 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 CBR 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 CBR 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A CBR 9 A CBR 9 DC B CBR 21 B CBR 9 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DG 4 0.066 SIDE CHAIN 1 A DG 10 0.091 SIDE CHAIN 1 A DC 11 0.060 SIDE CHAIN 1 A DG 12 0.056 SIDE CHAIN 1 B DG 14 0.070 SIDE CHAIN 1 B DC 15 0.102 SIDE CHAIN 1 B DG 16 0.095 SIDE CHAIN 1 B DT 19 0.098 SIDE CHAIN 1 B DG 24 0.086 SIDE CHAIN 1 12.62 1.10 109.80 122.42 A A A C5' C4' O4' DC DC DC 1 1 1 N 1 7.17 0.90 103.10 110.27 A A A C4' C3' C2' DC DC DC 1 1 1 N 1 4.78 0.30 108.30 113.08 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 -10.05 0.80 109.40 99.35 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 3.79 0.50 111.90 115.69 A A A C2 N3 C4 DG DG DG 2 2 2 N 1 -4.42 0.50 128.60 124.18 A A A N3 C4 C5 DG DG DG 2 2 2 N 1 4.42 0.60 126.00 130.42 A A A N3 C4 N9 DG DG DG 2 2 2 N 1 -7.46 1.00 110.10 102.64 A A A C1' O4' C4' DC DC DC 3 3 3 N 1 4.19 0.50 106.80 110.99 A A A O4' C1' C2' DC DC DC 3 3 3 N 1 3.59 0.50 119.90 123.49 A A A C2 N3 C4 DC DC DC 3 3 3 N 1 3.30 0.40 105.40 108.70 A A A N9 C4 C5 DG DG DG 4 4 4 N 1 7.51 1.20 119.70 127.21 A A A C3' O3' P DG DG DA 4 4 5 Y 1 2.02 0.30 108.30 110.32 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 3.31 0.50 110.60 113.91 A A A C2 N3 C4 DA DA DA 5 5 5 N 1 -3.83 0.40 105.80 101.97 A A A C8 N9 C4 DA DA DA 5 5 5 N 1 2.89 0.40 105.80 108.69 A A A N9 C4 C5 DA DA DA 5 5 5 N 1 10.08 1.10 109.80 119.88 A A A C5' C4' O4' DA DA DA 6 6 6 N 1 5.27 0.70 110.30 115.57 A A A C1' O4' C4' DA DA DA 6 6 6 N 1 -6.73 0.80 105.90 99.17 A A A O4' C1' C2' DA DA DA 6 6 6 N 1 -10.72 0.80 109.40 98.68 A A A O5' C5' C4' DT DT DT 7 7 7 N 1 -4.40 0.60 127.20 122.80 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 -4.42 0.60 123.70 119.28 A A A C5 C6 N1 DT DT DT 7 7 7 N 1 -5.31 0.60 119.90 114.59 A A A N3 C4 O4 DT DT DT 7 7 7 N 1 5.37 0.60 119.00 124.37 A A A C4 C5 C7 DT DT DT 7 7 7 N 1 -6.73 0.60 122.90 116.17 A A A C6 C5 C7 DT DT DT 7 7 7 N 1 9.22 1.20 119.70 128.92 A A A C3' O3' P DT DT DT 7 7 8 Y 1 4.04 0.60 115.20 119.24 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -3.65 0.60 119.90 116.25 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 5.71 0.60 119.00 124.71 A A A C4 C5 C7 DT DT DT 8 8 8 N 1 -5.97 0.60 122.90 116.93 A A A C6 C5 C7 DT DT DT 8 8 8 N 1 -6.58 0.90 105.70 99.12 A A A O5' P OP2 DG DG DG 10 10 10 N 1 -5.64 0.80 109.40 103.76 A A A O5' C5' C4' DG DG DG 10 10 10 N 1 8.20 1.20 115.70 123.90 A A A C5' C4' C3' DC DC DC 11 11 11 N 1 -5.68 0.70 102.20 96.52 A A A C4' C3' C2' DC DC DC 11 11 11 N 1 5.77 0.30 108.30 114.07 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 -10.85 0.80 109.40 98.55 A A A O5' C5' C4' DG DG DG 12 12 12 N 1 -6.66 0.70 108.00 101.34 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 4.09 0.50 111.90 115.99 A A A C2 N3 C4 DG DG DG 12 12 12 N 1 3.06 0.50 111.50 114.56 A A A C5 C6 N1 DG DG DG 12 12 12 N 1 4.06 0.60 106.00 110.06 B B B O4' C4' C3' DC DC DC 13 13 13 N 1 2.79 0.30 108.30 111.09 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 3.69 0.40 120.30 123.99 B B B C6 N1 C2 DC DC DC 13 13 13 N 1 3.77 0.60 106.00 109.77 B B B O4' C4' C3' DG DG DG 14 14 14 N 1 -4.11 0.60 123.90 119.79 B B B N1 C2 N3 DG DG DG 14 14 14 N 1 5.27 0.50 111.90 117.17 B B B C2 N3 C4 DG DG DG 14 14 14 N 1 -3.01 0.50 128.60 125.59 B B B N3 C4 C5 DG DG DG 14 14 14 N 1 3.14 0.50 111.50 114.64 B B B C5 C6 N1 DG DG DG 14 14 14 N 1 -2.40 0.40 106.40 104.00 B B B C8 N9 C4 DG DG DG 14 14 14 N 1 -4.34 0.60 119.90 115.56 B B B N1 C6 O6 DG DG DG 14 14 14 N 1 -10.18 0.90 105.70 95.52 B B B O5' P OP2 DC DC DC 15 15 15 N 1 8.38 0.30 108.30 116.68 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 -5.47 0.80 109.40 103.93 B B B O5' C5' C4' DG DG DG 16 16 16 N 1 4.23 0.60 106.00 110.23 B B B O4' C4' C3' DG DG DG 16 16 16 N 1 3.55 0.50 106.80 110.35 B B B O4' C1' C2' DG DG DG 16 16 16 N 1 3.99 0.30 108.30 112.29 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 3.89 0.60 118.60 122.49 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 3.83 0.60 118.60 122.43 B B B C6 N1 C2 DA DA DA 18 18 18 N 1 -4.86 0.50 129.30 124.44 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 3.09 0.50 110.60 113.69 B B B C2 N3 C4 DA DA DA 18 18 18 N 1 -3.10 0.50 103.90 100.80 B B B C5 N7 C8 DA DA DA 18 18 18 N 1 2.19 0.30 108.30 110.49 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 3.82 0.60 114.60 118.42 B B B N1 C2 N3 DT DT DT 19 19 19 N 1 -4.12 0.60 122.30 118.18 B B B N3 C2 O2 DT DT DT 19 19 19 N 1 3.83 0.60 119.00 122.83 B B B C4 C5 C7 DT DT DT 19 19 19 N 1 -4.11 0.60 122.90 118.79 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 -4.01 0.40 104.50 100.49 B B B O4' C4' C3' DT DT DT 20 20 20 N 1 -6.64 0.80 105.90 99.26 B B B O4' C1' C2' DT DT DT 20 20 20 N 1 -3.88 0.60 127.20 123.32 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 6.67 1.10 110.50 117.17 B B B O3' P OP2 DT CBR CBR 20 21 21 Y 1 -2.59 0.40 104.50 101.91 B B B O4' C4' C3' DG DG DG 22 22 22 N 1 2.68 0.30 108.30 110.98 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -7.41 0.80 109.40 101.99 B B B O5' C5' C4' DC DC DC 23 23 23 N 1 7.48 1.20 115.70 123.18 B B B C5' C4' C3' DC DC DC 23 23 23 N 1 3.18 0.50 119.90 123.08 B B B C2 N3 C4 DC DC DC 23 23 23 N 1 -4.56 0.60 123.90 119.34 B B B N1 C2 N3 DG DG DG 24 24 24 N 1 5.06 0.50 111.90 116.96 B B B C2 N3 C4 DG DG DG 24 24 24 N 1 -3.06 0.50 128.60 125.54 B B B N3 C4 C5 DG DG DG 24 24 24 N 1 2.57 0.40 105.40 107.97 B B B N9 C4 C5 DG DG DG 24 24 24 N 1 A A C4' C3' DC DC 1 1 -0.103 0.010 1.521 1.418 N 1 A A O3' C3' DC DC 1 1 -0.067 0.006 1.419 1.352 N 1 A A C5 C6 DC DC 1 1 0.059 0.008 1.339 1.398 N 1 A A O3' P DC DG 1 2 -0.075 0.012 1.607 1.532 Y 1 A A N3 C4 DG DG 2 2 0.051 0.007 1.350 1.401 N 1 A A C5 N7 DG DG 2 2 -0.072 0.006 1.388 1.316 N 1 A A P O5' DC DC 3 3 0.067 0.010 1.593 1.660 N 1 A A N1 C2 DC DC 3 3 -0.061 0.010 1.397 1.336 N 1 A A O4' C4' DG DG 4 4 -0.087 0.010 1.446 1.359 N 1 A A N9 C4 DG DG 4 4 -0.051 0.008 1.375 1.324 N 1 A A O3' C3' DA DA 5 5 -0.057 0.006 1.419 1.362 N 1 A A C5 N7 DA DA 5 5 -0.071 0.006 1.388 1.317 N 1 A A C4' C3' DA DA 6 6 -0.117 0.010 1.521 1.404 N 1 A A C2' C1' DA DA 6 6 -0.087 0.010 1.518 1.431 N 1 A A C5 C6 DA DA 6 6 0.071 0.009 1.406 1.477 N 1 A A C5 N7 DA DA 6 6 -0.037 0.006 1.388 1.351 N 1 A A C6 N6 DA DA 6 6 0.059 0.008 1.335 1.394 N 1 A A O3' P DA DT 6 7 -0.121 0.012 1.607 1.486 Y 1 A A P O5' DT DT 7 7 -0.093 0.010 1.593 1.500 N 1 A A O4' C4' DT DT 7 7 -0.106 0.010 1.446 1.340 N 1 A A O3' C3' DT DT 7 7 -0.045 0.006 1.419 1.374 N 1 A A C5 C6 DT DT 7 7 0.066 0.007 1.339 1.405 N 1 A A P OP2 DT DT 8 8 -0.193 0.017 1.485 1.292 N 1 A A O4' C4' DT DT 8 8 -0.066 0.010 1.446 1.380 N 1 A A C5 C6 DT DT 8 8 0.068 0.007 1.339 1.407 N 1 A A N3 C4 DG DG 10 10 0.062 0.007 1.350 1.412 N 1 A A C5 N7 DG DG 10 10 -0.053 0.006 1.388 1.335 N 1 A A C5 C6 DC DC 11 11 0.066 0.008 1.339 1.405 N 1 A A C5 N7 DG DG 12 12 -0.039 0.006 1.388 1.349 N 1 A A N9 C4 DG DG 12 12 -0.055 0.008 1.375 1.320 N 1 B B C5 C6 DC DC 13 13 0.060 0.008 1.339 1.399 N 1 B B P OP1 DC DC 15 15 -0.143 0.017 1.485 1.342 N 1 B B N3 C4 DG DG 16 16 0.044 0.007 1.350 1.394 N 1 B B C5 N7 DG DG 16 16 -0.041 0.006 1.388 1.347 N 1 B B N3 C4 DA DA 17 17 0.051 0.006 1.344 1.395 N 1 B B C5 N7 DA DA 17 17 -0.063 0.006 1.388 1.325 N 1 B B N3 C4 DA DA 18 18 0.039 0.006 1.344 1.383 N 1 B B C5 C6 DT DT 19 19 0.062 0.007 1.339 1.401 N 1 B B C5 C6 DT DT 20 20 0.059 0.007 1.339 1.398 N 1 B B O3' C3' DG DG 22 22 -0.068 0.006 1.419 1.351 N 1 B B C5 N7 DG DG 22 22 -0.049 0.006 1.388 1.339 N 1 B B N7 C8 DG DG 22 22 0.045 0.006 1.305 1.350 N 1 B B O3' P DG DC 22 23 -0.072 0.012 1.607 1.535 Y 1 B B O4' C4' DC DC 23 23 -0.084 0.010 1.446 1.362 N 1 B B C5 C6 DC DC 23 23 0.051 0.008 1.339 1.390 N 1 B B C5 N7 DG DG 24 24 -0.041 0.006 1.388 1.347 N 1 B B N7 C8 DG DG 24 24 0.058 0.006 1.305 1.363 N 0.211 2.210 8.000 2528 1 2.000 TR isotropic TR isotropic 2.210 8.000 75 594 33 486 0 fix fix 2.200 6BNA 3240 1 refinement JACK-LEVITT BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G 1 N N 1 N N 2 N N 3 N N 3 N N covale 1.589 both A DT 8 A O3' DT 8 1_555 A CBR 9 A P CBR 9 1_555 covale 1.609 both A CBR 9 A O3' CBR 9 1_555 A DG 10 A P DG 10 1_555 covale 1.587 both B DT 20 B O3' DT 8 1_555 B CBR 21 B P CBR 9 1_555 covale 1.646 both B CBR 21 B O3' CBR 9 1_555 B DG 22 B P DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B CBR 21 B N3 CBR 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B CBR 21 B O2 CBR 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B CBR 21 B N4 CBR 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A CBR 9 A N3 CBR 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A CBR 9 A N4 CBR 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A CBR 9 A O2 CBR 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA 6BNA PDB 1 6BNA 1 12 6BNA 1 12 6BNA A 1 1 12 13 24 6BNA 13 24 6BNA B 1 1 12 BINDING SITE FOR RESIDUE NT B 25 B NT 25 Software 11 A DA 5 A DA 5 11 1_555 A DA 6 A DA 6 11 1_555 A DT 7 A DT 7 11 1_555 A DT 8 A DT 8 11 1_555 A CBR 9 A CBR 9 11 1_555 B DA 17 B DA 5 11 1_555 B DA 18 B DA 6 11 1_555 B DT 20 B DT 8 11 1_555 B CBR 21 B CBR 9 11 1_555 B DG 22 B DG 10 11 1_555 B HOH 66 E HOH 11 1_555 19 P 21 21 21