1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schlicksup, C.
Wang, J.C.
Zlotnick, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C51 H48 Cl F N8 O7
939.428
Heteroaryldihydropyrimidine tetramethylrodamine
HAP-TAMRA
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Elife
2050-084X
7
10.7554/eLife.31473
29377794
Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids.
2018
10.2210/pdb6bvn/pdb
pdb_00006bvn
FLEXIBLE FIT
REAL
Correlation Coefficient
A
1-143
5D7Y
FOURIER SPACE
6BVN
16008
4.0
FSC 0.143 CUT-OFF
POINT
7.5
50
mM
C8H18N2O4S
HEPES
300
mM
NaCl
Sodium Chloride
1
PHASE FLIPPING AND AMPLITUDE CORRECTION
1
Hepatitis B virus T=3 capsid
0
RECOMBINANT
VIRUS
10419
Hepatitis B virus genotype D subtype adw
isolate United Kingdom/adyw/1979
562
Escherichia coli
PARTICLE
1
1
SINGLE PARTICLE
33
SUPER-RESOLUTION
GATAN K2 SUMMIT (4k x 4k)
1
679
300
FIELD EMISSION GUN
FLOOD BEAM
FEI TITAN KRIOS
BRIGHT FIELD
1
24823
COPPER
300
Quantifoil R2/2
CRYSTALLOGRAPHY MERGING
1
1
1
IMAGE ACQUISITION
1
MASKING
CTF CORRECTION
1
CTFFIND
4.1
LAYERLINE INDEXING
DIFFRACTION INDEXING
MODEL FITTING
1
Coot
0.8.7
OTHER
INITIAL EULER ASSIGNMENT
1
FINAL EULER ASSIGNMENT
1
CLASSIFICATION
1
RECONSTRUCTION
Automated B-factor Sharpening
1
RELION
2.1
MODEL REFINEMENT
1
PHENIX
1.11
10
NO
NO
NO
YES
YES
NO
OTHER
VIRUS-LIKE PARTICLE
295.15
ETHANE
6BVN
100
FEI VITROBOT MARK III
16791.104
Capsid protein
UNP residues 1-149
C48A, C61A, C107A
3
man
polymer
939.428
Heteroaryldihydropyrimidine tetramethylrodamine
1
syn
non-polymer
Core antigen, Core protein, HBcAg, p21.5
no
no
MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILAWGDLMTLATWVGTNLEDPA
SRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVVC
MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILAWGDLMTLATWVGTNLEDPA
SRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVVC
C,B,A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
isolate United Kingdom/adyw/1979
sample
1
150
10419
Hepatitis B virus genotype D subtype adw
562
Escherichia coli
Biological sequence
pdbx_audit_support
pdbx_audit_support
chem_comp
database_2
entity
pdbx_struct_oper_list
repository
Initial release
Author supporting evidence
Author supporting evidence
Database references
Derived calculations
Non-polymer description
Structure summary
1
0
2018-02-07
1
1
2018-02-14
1
2
2019-11-27
2
0
2022-04-13
_pdbx_audit_support.funding_organization
_pdbx_audit_support.funding_organization
_pdbx_audit_support.grant_number
_chem_comp.formula
_chem_comp.formula_weight
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.formula_weight
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.type
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI067417
Hepatitis B virus T=4 capsid
Hepatitis B virus T=4 capsid
Cryo-EM Structure of Hepatitis B virus T=3 capsid in complex with the fluorescent allosteric modulator HAP-TAMRA
N
RCSB
Y
RCSB
2017-12-13
REL
E9D
Heteroaryldihydropyrimidine tetramethylrodamine
LIG
1
2
E9D
E9D
201
B
I
MET
1
n
1
MET
1
C
ASP
2
n
2
ASP
2
C
ILE
3
n
3
ILE
3
C
ASP
4
n
4
ASP
4
C
PRO
5
n
5
PRO
5
C
TYR
6
n
6
TYR
6
C
LYS
7
n
7
LYS
7
C
GLU
8
n
8
GLU
8
C
PHE
9
n
9
PHE
9
C
GLY
10
n
10
GLY
10
C
ALA
11
n
11
ALA
11
C
THR
12
n
12
THR
12
C
VAL
13
n
13
VAL
13
C
GLU
14
n
14
GLU
14
C
LEU
15
n
15
LEU
15
C
LEU
16
n
16
LEU
16
C
SER
17
n
17
SER
17
C
PHE
18
n
18
PHE
18
C
LEU
19
n
19
LEU
19
C
PRO
20
n
20
PRO
20
C
SER
21
n
21
SER
21
C
ASP
22
n
22
ASP
22
C
PHE
23
n
23
PHE
23
C
PHE
24
n
24
PHE
24
C
PRO
25
n
25
PRO
25
C
SER
26
n
26
SER
26
C
VAL
27
n
27
VAL
27
C
ARG
28
n
28
ARG
28
C
ASP
29
n
29
ASP
29
C
LEU
30
n
30
LEU
30
C
LEU
31
n
31
LEU
31
C
ASP
32
n
32
ASP
32
C
THR
33
n
33
THR
33
C
ALA
34
n
34
ALA
34
C
ALA
35
n
35
ALA
35
C
ALA
36
n
36
ALA
36
C
LEU
37
n
37
LEU
37
C
TYR
38
n
38
TYR
38
C
ARG
39
n
39
ARG
39
C
ASP
40
n
40
ASP
40
C
ALA
41
n
41
ALA
41
C
LEU
42
n
42
LEU
42
C
GLU
43
n
43
GLU
43
C
SER
44
n
44
SER
44
C
PRO
45
n
45
PRO
45
C
GLU
46
n
46
GLU
46
C
HIS
47
n
47
HIS
47
C
ALA
48
n
48
ALA
48
C
SER
49
n
49
SER
49
C
PRO
50
n
50
PRO
50
C
HIS
51
n
51
HIS
51
C
HIS
52
n
52
HIS
52
C
THR
53
n
53
THR
53
C
ALA
54
n
54
ALA
54
C
LEU
55
n
55
LEU
55
C
ARG
56
n
56
ARG
56
C
GLN
57
n
57
GLN
57
C
ALA
58
n
58
ALA
58
C
ILE
59
n
59
ILE
59
C
LEU
60
n
60
LEU
60
C
ALA
61
n
61
ALA
61
C
TRP
62
n
62
TRP
62
C
GLY
63
n
63
GLY
63
C
ASP
64
n
64
ASP
64
C
LEU
65
n
65
LEU
65
C
MET
66
n
66
MET
66
C
THR
67
n
67
THR
67
C
LEU
68
n
68
LEU
68
C
ALA
69
n
69
ALA
69
C
THR
70
n
70
THR
70
C
TRP
71
n
71
TRP
71
C
VAL
72
n
72
VAL
72
C
GLY
73
n
73
GLY
73
C
THR
74
n
74
THR
74
C
ASN
75
n
75
ASN
75
C
LEU
76
n
76
LEU
76
C
GLU
77
n
77
GLU
77
C
ASP
78
n
78
ASP
78
C
PRO
79
n
79
PRO
79
C
ALA
80
n
80
ALA
80
C
SER
81
n
81
SER
81
C
ARG
82
n
82
ARG
82
C
ASP
83
n
83
ASP
83
C
LEU
84
n
84
LEU
84
C
VAL
85
n
85
VAL
85
C
VAL
86
n
86
VAL
86
C
SER
87
n
87
SER
87
C
TYR
88
n
88
TYR
88
C
VAL
89
n
89
VAL
89
C
ASN
90
n
90
ASN
90
C
THR
91
n
91
THR
91
C
ASN
92
n
92
ASN
92
C
VAL
93
n
93
VAL
93
C
GLY
94
n
94
GLY
94
C
LEU
95
n
95
LEU
95
C
LYS
96
n
96
LYS
96
C
PHE
97
n
97
PHE
97
C
ARG
98
n
98
ARG
98
C
GLN
99
n
99
GLN
99
C
LEU
100
n
100
LEU
100
C
LEU
101
n
101
LEU
101
C
TRP
102
n
102
TRP
102
C
PHE
103
n
103
PHE
103
C
HIS
104
n
104
HIS
104
C
ILE
105
n
105
ILE
105
C
SER
106
n
106
SER
106
C
ALA
107
n
107
ALA
107
C
LEU
108
n
108
LEU
108
C
THR
109
n
109
THR
109
C
PHE
110
n
110
PHE
110
C
GLY
111
n
111
GLY
111
C
ARG
112
n
112
ARG
112
C
GLU
113
n
113
GLU
113
C
THR
114
n
114
THR
114
C
VAL
115
n
115
VAL
115
C
LEU
116
n
116
LEU
116
C
GLU
117
n
117
GLU
117
C
TYR
118
n
118
TYR
118
C
LEU
119
n
119
LEU
119
C
VAL
120
n
120
VAL
120
C
SER
121
n
121
SER
121
C
PHE
122
n
122
PHE
122
C
GLY
123
n
123
GLY
123
C
VAL
124
n
124
VAL
124
C
TRP
125
n
125
TRP
125
C
ILE
126
n
126
ILE
126
C
ARG
127
n
127
ARG
127
C
THR
128
n
128
THR
128
C
PRO
129
n
129
PRO
129
C
PRO
130
n
130
PRO
130
C
ALA
131
n
131
ALA
131
C
TYR
132
n
132
TYR
132
C
ARG
133
n
133
ARG
133
C
PRO
134
n
134
PRO
134
C
PRO
135
n
135
PRO
135
C
ASN
136
n
136
ASN
136
C
ALA
137
n
137
ALA
137
C
PRO
138
n
138
PRO
138
C
ILE
139
n
139
ILE
139
C
LEU
140
n
140
LEU
140
C
SER
141
n
141
SER
141
C
THR
142
n
142
THR
142
C
LEU
143
n
143
LEU
143
C
PRO
144
n
144
PRO
144
C
n
145
145
C
n
146
146
C
n
147
147
C
n
148
148
C
n
149
149
C
n
150
150
C
MET
1
n
1
MET
1
B
ASP
2
n
2
ASP
2
B
ILE
3
n
3
ILE
3
B
ASP
4
n
4
ASP
4
B
PRO
5
n
5
PRO
5
B
TYR
6
n
6
TYR
6
B
LYS
7
n
7
LYS
7
B
GLU
8
n
8
GLU
8
B
PHE
9
n
9
PHE
9
B
GLY
10
n
10
GLY
10
B
ALA
11
n
11
ALA
11
B
THR
12
n
12
THR
12
B
VAL
13
n
13
VAL
13
B
GLU
14
n
14
GLU
14
B
LEU
15
n
15
LEU
15
B
LEU
16
n
16
LEU
16
B
SER
17
n
17
SER
17
B
PHE
18
n
18
PHE
18
B
LEU
19
n
19
LEU
19
B
PRO
20
n
20
PRO
20
B
SER
21
n
21
SER
21
B
ASP
22
n
22
ASP
22
B
PHE
23
n
23
PHE
23
B
PHE
24
n
24
PHE
24
B
PRO
25
n
25
PRO
25
B
SER
26
n
26
SER
26
B
VAL
27
n
27
VAL
27
B
ARG
28
n
28
ARG
28
B
ASP
29
n
29
ASP
29
B
LEU
30
n
30
LEU
30
B
LEU
31
n
31
LEU
31
B
ASP
32
n
32
ASP
32
B
THR
33
n
33
THR
33
B
ALA
34
n
34
ALA
34
B
ALA
35
n
35
ALA
35
B
ALA
36
n
36
ALA
36
B
LEU
37
n
37
LEU
37
B
TYR
38
n
38
TYR
38
B
ARG
39
n
39
ARG
39
B
ASP
40
n
40
ASP
40
B
ALA
41
n
41
ALA
41
B
LEU
42
n
42
LEU
42
B
GLU
43
n
43
GLU
43
B
SER
44
n
44
SER
44
B
PRO
45
n
45
PRO
45
B
GLU
46
n
46
GLU
46
B
HIS
47
n
47
HIS
47
B
ALA
48
n
48
ALA
48
B
SER
49
n
49
SER
49
B
PRO
50
n
50
PRO
50
B
HIS
51
n
51
HIS
51
B
HIS
52
n
52
HIS
52
B
THR
53
n
53
THR
53
B
ALA
54
n
54
ALA
54
B
LEU
55
n
55
LEU
55
B
ARG
56
n
56
ARG
56
B
GLN
57
n
57
GLN
57
B
ALA
58
n
58
ALA
58
B
ILE
59
n
59
ILE
59
B
LEU
60
n
60
LEU
60
B
ALA
61
n
61
ALA
61
B
TRP
62
n
62
TRP
62
B
GLY
63
n
63
GLY
63
B
ASP
64
n
64
ASP
64
B
LEU
65
n
65
LEU
65
B
MET
66
n
66
MET
66
B
THR
67
n
67
THR
67
B
LEU
68
n
68
LEU
68
B
ALA
69
n
69
ALA
69
B
THR
70
n
70
THR
70
B
TRP
71
n
71
TRP
71
B
VAL
72
n
72
VAL
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
ASN
75
n
75
ASN
75
B
LEU
76
n
76
LEU
76
B
GLU
77
n
77
GLU
77
B
ASP
78
n
78
ASP
78
B
PRO
79
n
79
PRO
79
B
ALA
80
n
80
ALA
80
B
SER
81
n
81
SER
81
B
ARG
82
n
82
ARG
82
B
ASP
83
n
83
ASP
83
B
LEU
84
n
84
LEU
84
B
VAL
85
n
85
VAL
85
B
VAL
86
n
86
VAL
86
B
SER
87
n
87
SER
87
B
TYR
88
n
88
TYR
88
B
VAL
89
n
89
VAL
89
B
ASN
90
n
90
ASN
90
B
THR
91
n
91
THR
91
B
ASN
92
n
92
ASN
92
B
VAL
93
n
93
VAL
93
B
GLY
94
n
94
GLY
94
B
LEU
95
n
95
LEU
95
B
LYS
96
n
96
LYS
96
B
PHE
97
n
97
PHE
97
B
ARG
98
n
98
ARG
98
B
GLN
99
n
99
GLN
99
B
LEU
100
n
100
LEU
100
B
LEU
101
n
101
LEU
101
B
TRP
102
n
102
TRP
102
B
PHE
103
n
103
PHE
103
B
HIS
104
n
104
HIS
104
B
ILE
105
n
105
ILE
105
B
SER
106
n
106
SER
106
B
ALA
107
n
107
ALA
107
B
LEU
108
n
108
LEU
108
B
THR
109
n
109
THR
109
B
PHE
110
n
110
PHE
110
B
GLY
111
n
111
GLY
111
B
ARG
112
n
112
ARG
112
B
GLU
113
n
113
GLU
113
B
THR
114
n
114
THR
114
B
VAL
115
n
115
VAL
115
B
LEU
116
n
116
LEU
116
B
GLU
117
n
117
GLU
117
B
TYR
118
n
118
TYR
118
B
LEU
119
n
119
LEU
119
B
VAL
120
n
120
VAL
120
B
SER
121
n
121
SER
121
B
PHE
122
n
122
PHE
122
B
GLY
123
n
123
GLY
123
B
VAL
124
n
124
VAL
124
B
TRP
125
n
125
TRP
125
B
ILE
126
n
126
ILE
126
B
ARG
127
n
127
ARG
127
B
THR
128
n
128
THR
128
B
PRO
129
n
129
PRO
129
B
PRO
130
n
130
PRO
130
B
ALA
131
n
131
ALA
131
B
TYR
132
n
132
TYR
132
B
ARG
133
n
133
ARG
133
B
PRO
134
n
134
PRO
134
B
PRO
135
n
135
PRO
135
B
ASN
136
n
136
ASN
136
B
ALA
137
n
137
ALA
137
B
PRO
138
n
138
PRO
138
B
ILE
139
n
139
ILE
139
B
LEU
140
n
140
LEU
140
B
SER
141
n
141
SER
141
B
THR
142
n
142
THR
142
B
LEU
143
n
143
LEU
143
B
PRO
144
n
144
PRO
144
B
n
145
145
B
n
146
146
B
n
147
147
B
n
148
148
B
n
149
149
B
n
150
150
B
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
ILE
3
n
3
ILE
3
A
ASP
4
n
4
ASP
4
A
PRO
5
n
5
PRO
5
A
TYR
6
n
6
TYR
6
A
LYS
7
n
7
LYS
7
A
GLU
8
n
8
GLU
8
A
PHE
9
n
9
PHE
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
THR
12
n
12
THR
12
A
VAL
13
n
13
VAL
13
A
GLU
14
n
14
GLU
14
A
LEU
15
n
15
LEU
15
A
LEU
16
n
16
LEU
16
A
SER
17
n
17
SER
17
A
PHE
18
n
18
PHE
18
A
LEU
19
n
19
LEU
19
A
PRO
20
n
20
PRO
20
A
SER
21
n
21
SER
21
A
ASP
22
n
22
ASP
22
A
PHE
23
n
23
PHE
23
A
PHE
24
n
24
PHE
24
A
PRO
25
n
25
PRO
25
A
SER
26
n
26
SER
26
A
VAL
27
n
27
VAL
27
A
ARG
28
n
28
ARG
28
A
ASP
29
n
29
ASP
29
A
LEU
30
n
30
LEU
30
A
LEU
31
n
31
LEU
31
A
ASP
32
n
32
ASP
32
A
THR
33
n
33
THR
33
A
ALA
34
n
34
ALA
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
LEU
37
n
37
LEU
37
A
TYR
38
n
38
TYR
38
A
ARG
39
n
39
ARG
39
A
ASP
40
n
40
ASP
40
A
ALA
41
n
41
ALA
41
A
LEU
42
n
42
LEU
42
A
GLU
43
n
43
GLU
43
A
SER
44
n
44
SER
44
A
PRO
45
n
45
PRO
45
A
GLU
46
n
46
GLU
46
A
HIS
47
n
47
HIS
47
A
ALA
48
n
48
ALA
48
A
SER
49
n
49
SER
49
A
PRO
50
n
50
PRO
50
A
HIS
51
n
51
HIS
51
A
HIS
52
n
52
HIS
52
A
THR
53
n
53
THR
53
A
ALA
54
n
54
ALA
54
A
LEU
55
n
55
LEU
55
A
ARG
56
n
56
ARG
56
A
GLN
57
n
57
GLN
57
A
ALA
58
n
58
ALA
58
A
ILE
59
n
59
ILE
59
A
LEU
60
n
60
LEU
60
A
ALA
61
n
61
ALA
61
A
TRP
62
n
62
TRP
62
A
GLY
63
n
63
GLY
63
A
ASP
64
n
64
ASP
64
A
LEU
65
n
65
LEU
65
A
MET
66
n
66
MET
66
A
THR
67
n
67
THR
67
A
LEU
68
n
68
LEU
68
A
ALA
69
n
69
ALA
69
A
THR
70
n
70
THR
70
A
TRP
71
n
71
TRP
71
A
VAL
72
n
72
VAL
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
ASN
75
n
75
ASN
75
A
LEU
76
n
76
LEU
76
A
GLU
77
n
77
GLU
77
A
ASP
78
n
78
ASP
78
A
PRO
79
n
79
PRO
79
A
ALA
80
n
80
ALA
80
A
SER
81
n
81
SER
81
A
ARG
82
n
82
ARG
82
A
ASP
83
n
83
ASP
83
A
LEU
84
n
84
LEU
84
A
VAL
85
n
85
VAL
85
A
VAL
86
n
86
VAL
86
A
SER
87
n
87
SER
87
A
TYR
88
n
88
TYR
88
A
VAL
89
n
89
VAL
89
A
ASN
90
n
90
ASN
90
A
THR
91
n
91
THR
91
A
ASN
92
n
92
ASN
92
A
VAL
93
n
93
VAL
93
A
GLY
94
n
94
GLY
94
A
LEU
95
n
95
LEU
95
A
LYS
96
n
96
LYS
96
A
PHE
97
n
97
PHE
97
A
ARG
98
n
98
ARG
98
A
GLN
99
n
99
GLN
99
A
LEU
100
n
100
LEU
100
A
LEU
101
n
101
LEU
101
A
TRP
102
n
102
TRP
102
A
PHE
103
n
103
PHE
103
A
HIS
104
n
104
HIS
104
A
ILE
105
n
105
ILE
105
A
SER
106
n
106
SER
106
A
ALA
107
n
107
ALA
107
A
LEU
108
n
108
LEU
108
A
THR
109
n
109
THR
109
A
PHE
110
n
110
PHE
110
A
GLY
111
n
111
GLY
111
A
ARG
112
n
112
ARG
112
A
GLU
113
n
113
GLU
113
A
THR
114
n
114
THR
114
A
VAL
115
n
115
VAL
115
A
LEU
116
n
116
LEU
116
A
GLU
117
n
117
GLU
117
A
TYR
118
n
118
TYR
118
A
LEU
119
n
119
LEU
119
A
VAL
120
n
120
VAL
120
A
SER
121
n
121
SER
121
A
PHE
122
n
122
PHE
122
A
GLY
123
n
123
GLY
123
A
VAL
124
n
124
VAL
124
A
TRP
125
n
125
TRP
125
A
ILE
126
n
126
ILE
126
A
ARG
127
n
127
ARG
127
A
THR
128
n
128
THR
128
A
PRO
129
n
129
PRO
129
A
PRO
130
n
130
PRO
130
A
ALA
131
n
131
ALA
131
A
TYR
132
n
132
TYR
132
A
ARG
133
n
133
ARG
133
A
PRO
134
n
134
PRO
134
A
PRO
135
n
135
PRO
135
A
ASN
136
n
136
ASN
136
A
ALA
137
n
137
ALA
137
A
PRO
138
n
138
PRO
138
A
ILE
139
n
139
ILE
139
A
LEU
140
n
140
LEU
140
A
SER
141
n
141
SER
141
A
THR
142
n
142
THR
142
A
LEU
143
n
143
LEU
143
A
PRO
144
n
144
PRO
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
complete icosahedral assembly
180
180-meric
icosahedral asymmetric unit
3
trimeric
icosahedral pentamer
15
pentadecameric
icosahedral 23 hexamer
18
octadecameric
icosahedral asymmetric unit, std point frame
3
trimeric
microscopy
gel filtration
-0.30959628
0.49995899
-0.80882084
-0.80849970
0.30929948
0.50066163
0.50047815
0.80893439
0.30845872
transform to point frame
149.97189
0.25458
-394.60206
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
1_555
x,y,z
identity operation
0.00000
0.00000
0.00000
0.30901731
-0.49948020
0.80933790
0.50027812
0.80910898
0.30832525
-0.80884491
0.30961620
0.49990770
point symmetry operation
94.05324
-150.41480
243.33603
-0.80901617
-0.30789782
0.50069131
0.30998681
0.50024082
0.80849694
-0.49940067
0.80929480
-0.30925864
point symmetry operation
395.18761
-150.03734
242.33624
-0.80901616
0.30998681
-0.49940067
-0.30789781
0.50024081
0.80929479
0.50069131
0.80849695
-0.30925864
point symmetry operation
487.24564
0.61074
-1.61770
0.30901732
0.50027813
-0.80884492
-0.49948020
0.80910897
0.30961621
0.80933790
0.30832526
0.49990770
point symmetry operation
243.00626
93.33892
-151.38973
-0.49904325
0.80970797
0.30875370
0.80970797
0.30874968
0.49904573
0.30875370
0.49904574
-0.80970643
point symmetry operation
93.27314
-150.11707
242.34586
0.00113233
0.99999936
0.00010715
0.00102389
-0.00010832
0.99999947
0.99999883
-0.00113220
-0.00102401
point symmetry operation
-0.32466
1.03388
-0.70946
0.50054104
0.80857606
0.30929505
-0.80858227
0.30901699
0.50070271
0.30927879
-0.50071275
0.80847596
point symmetry operation
-150.60679
244.48237
93.26479
0.30901703
0.49997857
0.80903023
-0.50026232
0.80892493
-0.30883340
-0.80885480
-0.30929256
0.50009203
point symmetry operation
-149.88846
243.79086
394.39940
-0.30876003
0.50067812
0.80869565
0.49989605
0.80875972
-0.30985747
-0.80917932
0.30859217
-0.49999969
point symmetry operation
0.83763
-0.08500
486.53657
0.30734353
-0.50013707
-0.80956955
-0.50013708
-0.80866766
0.30970877
-0.80956955
0.30970876
-0.49867587
point symmetry operation
487.84090
488.45476
486.03768
0.49958305
-0.80883326
-0.31017018
-0.80961611
-0.30860084
-0.49928675
0.30812096
0.50055397
-0.80901619
point symmetry operation
394.97813
638.41413
241.96445
0.00061779
-0.99999981
-0.00010868
-0.00072609
0.00010824
-0.99999973
0.99999955
0.00061787
-0.00072603
point symmetry operation
488.15044
487.19078
-1.20929
-0.49999921
-0.80945105
-0.30787951
0.80867447
-0.30916587
-0.50046185
0.30991352
-0.49920484
0.80916509
point symmetry operation
638.59687
243.77025
92.57430
-0.31043228
-0.50051889
-0.80815385
0.50002150
-0.80901687
0.30898252
-0.80846168
-0.30817617
0.50141516
point symmetry operation
638.40556
244.55143
393.70949
-0.80830028
-0.30957089
0.50081586
-0.30957088
-0.50008202
-0.80875450
0.50081585
-0.80875450
0.30838230
point symmetry operation
395.39107
638.25686
243.18198
-0.80973268
0.30831410
-0.49927487
0.30831411
-0.50039982
-0.80903796
-0.49927488
-0.80903797
0.31013250
point symmetry operation
487.79839
487.56134
486.97450
0.30785733
0.49932156
-0.80987768
0.49932155
-0.80936604
-0.30919992
-0.80987767
-0.30919992
-0.49849128
point symmetry operation
243.77384
394.95874
637.17378
0.99999834
-0.00051433
-0.00175004
-0.00051434
-0.99999987
0.00000045
-0.00175003
0.00000045
-0.99999847
point symmetry operation
0.55105
488.42270
486.20951
0.31017500
-0.50043736
0.80830311
-0.50043736
-0.80885183
-0.30874126
0.80830311
-0.30874126
-0.50132317
point symmetry operation
94.25565
638.78921
242.70918
-0.30927411
-0.49986215
0.80900394
-0.49956263
0.80927406
0.30905125
-0.80918892
-0.30856659
-0.49999995
point symmetry operation
245.16879
93.45596
637.21745
-0.99999987
0.00051407
-0.00000008
0.00051408
0.99999982
-0.00029824
-0.00000008
-0.00029824
-0.99999996
point symmetry operation
488.12703
-0.05302
485.85558
-0.30876002
0.49989605
-0.80917933
0.50067813
0.80875972
0.30859216
0.80869565
-0.30985746
-0.49999970
point symmetry operation
393.99645
-150.49201
242.56441
0.80917545
0.30815487
-0.50027560
0.30971980
0.49984108
0.80884642
0.49930826
-0.80944393
0.30901746
point symmetry operation
92.86232
-149.95944
243.56407
0.80885773
-0.30972967
0.49981666
-0.30846298
0.50015895
0.80913015
-0.50059940
-0.80864613
0.30901730
point symmetry operation
0.88177
0.80869
487.47306
-0.00061825
-0.00102402
-0.99999928
0.99999972
-0.00040602
-0.00061783
-0.00040539
-0.99999940
0.00102427
point symmetry operation
487.41842
0.27162
486.89005
0.80814099
-0.31013572
-0.50072345
0.30931382
-0.49999987
0.80890363
-0.50123157
-0.80858887
-0.30814112
point symmetry operation
244.17845
94.23558
637.51587
0.49958305
-0.80961612
0.30812095
-0.80883326
-0.30860085
0.50055397
-0.31017018
-0.49928676
-0.80901619
point symmetry operation
244.99168
395.37032
637.01531
-0.49987549
-0.80920027
0.30873844
-0.80920026
0.30928410
-0.49953806
0.30873844
-0.49953806
-0.80940862
point symmetry operation
488.73426
487.51788
486.08013
-0.80901689
-0.30946288
-0.49972433
0.30872000
0.49975898
-0.80927926
0.50018360
-0.80899549
-0.30877608
point symmetry operation
638.56223
243.33346
393.29761
-0.49999875
0.80945741
-0.30786353
-0.80848378
-0.30886809
0.50095357
0.31041135
0.49937883
0.80886685
point symmetry operation
243.33858
395.25319
-151.27763
0.49945941
0.80935920
-0.30899513
-0.80954917
0.30901704
-0.49913785
-0.30849705
0.49944586
0.80955754
point symmetry operation
-0.35658
487.57105
-0.36996
0.80917545
0.30971981
0.49930826
0.30815487
0.49984108
-0.80944393
-0.50027559
0.80884643
0.30901746
point symmetry operation
-150.31005
243.49137
92.48536
0.00113231
0.00102389
0.99999884
0.99999935
-0.00010831
-0.00113222
0.00010716
0.99999947
-0.00102401
point symmetry operation
0.70877
0.32397
-1.03457
-0.80798184
0.30987871
0.50113924
0.30987871
-0.49991806
0.80873797
0.50113924
0.80873798
0.30789990
point symmetry operation
243.99701
94.11793
-151.68838
0.80989111
-0.30857124
0.49885888
0.30804669
-0.49999994
-0.80938698
0.49918297
0.80918715
-0.30989116
point symmetry operation
0.57930
487.61377
-1.26435
-0.30760054
-0.49973754
0.80971866
0.49972127
-0.80901699
-0.30946754
0.80972870
0.30944126
0.49858354
point symmetry operation
244.55621
394.84094
-151.43598
-0.99999847
0.00000026
0.00175012
0.00000026
-0.99999996
0.00029779
0.00175011
0.00029779
0.99999842
point symmetry operation
487.82702
488.22487
-0.49957
-0.31043228
0.50002151
-0.80846168
-0.50051889
-0.80901687
-0.30817615
-0.80815385
0.30898251
0.50141516
point symmetry operation
394.19975
638.71215
242.95589
0.80814100
0.30931384
-0.50123157
-0.31013573
-0.49999987
-0.80858886
-0.50072344
0.80890363
-0.30814112
point symmetry operation
93.06410
638.33447
242.48323
-0.30927410
-0.49956263
-0.80918892
-0.49986213
0.80927406
-0.30856658
0.80900394
0.30905125
-0.49999996
point symmetry operation
638.14076
243.54312
91.38350
0.30901704
-0.50026232
-0.80885480
0.49997857
0.80892494
-0.30929255
0.80903022
-0.30883339
0.50009202
point symmetry operation
487.28932
-0.28269
-0.68094
0.49945940
-0.80954918
-0.30849705
0.80935919
0.30901705
0.49944585
-0.30899514
-0.49913786
0.80955754
point symmetry operation
394.77671
-150.19439
243.55449
-0.00113188
-0.99999928
0.00040692
0.00072623
0.00040610
0.99999965
-0.99999910
0.00113216
0.00072577
point symmetry operation
488.45222
0.98090
486.56474
-0.50095667
-0.80841706
-0.30903767
-0.80841705
0.30958194
0.50062050
-0.30903767
0.50062050
-0.80862527
point symmetry operation
638.85947
244.32407
392.51789
-0.49999877
-0.80848379
0.31041135
0.80945740
-0.30886808
0.49937883
-0.30786353
0.50095356
0.80886685
point symmetry operation
488.18309
0.65373
-0.72496
-0.81004967
-0.30830362
-0.49876689
-0.30830362
-0.49960011
0.80953605
-0.49876689
0.80953604
0.30964978
point symmetry operation
638.29877
244.76101
91.79510
-0.00113186
0.00072623
-0.99999910
-0.99999927
0.00040610
0.00113217
0.00040693
0.99999966
0.00072577
point symmetry operation
487.11644
487.90059
-1.53280
0.80885774
-0.30846298
-0.50059940
-0.30972967
0.50015896
-0.80864612
0.49981667
0.80913016
0.30901730
point symmetry operation
243.56494
394.06183
-151.73267
0.50054103
-0.80858228
0.30927880
0.80857606
0.30901700
-0.50071275
0.30929505
0.50070271
0.80847595
point symmetry operation
244.22416
92.92671
-151.23339
0.80989111
0.30804669
0.49918296
-0.30857125
-0.49999995
0.80918714
0.49885888
-0.80938698
-0.30989116
point symmetry operation
-150.04584
245.00871
393.98744
0.00061780
-0.00072610
0.99999955
-0.99999980
0.00010823
0.00061787
-0.00010869
-0.99999973
-0.00072603
point symmetry operation
1.26146
488.09836
487.24283
-0.80901689
0.30871999
0.50018361
-0.30946286
0.49975898
-0.80899549
-0.49972433
-0.80927927
-0.30877608
point symmetry operation
244.76470
394.17921
637.47070
-0.50012533
0.80874099
-0.30953622
0.80874099
0.30845194
-0.50079479
-0.30953622
-0.50079479
-0.80832661
point symmetry operation
243.95068
93.04433
637.06123
0.50041484
0.80832486
-0.31015466
0.80929203
-0.30943306
0.49929708
0.30762214
-0.50086136
-0.80901577
point symmetry operation
-0.05566
0.85189
486.58031
-0.00061824
0.99999973
-0.00040539
-0.00102402
-0.00040603
-0.99999939
-0.99999928
-0.00061783
0.00102427
point symmetry operation
0.22710
487.38899
486.91954
0.50041484
0.80929205
0.30762214
0.80832485
-0.30943306
-0.50086136
-0.31015465
0.49929708
-0.80901577
point symmetry operation
-150.34445
244.01787
393.20853
0.31068935
0.50010296
0.80831254
0.50010295
-0.80918212
0.30841746
0.80831255
0.30841747
-0.50150723
point symmetry operation
-150.15276
244.70914
92.07313
-0.30760053
0.49972127
0.80972870
-0.49973754
-0.80901700
0.30944125
0.80971865
-0.30946753
0.49858354
point symmetry operation
0.53726
488.50749
-0.32779
-0.49999921
0.80867447
0.30991353
-0.80945104
-0.30916588
-0.49920483
-0.30787952
-0.50046185
0.80916509
point symmetry operation
93.47712
638.49188
243.70072
1
C
GLU
145
A
GLU
145
1
Y
1
C
THR
146
A
THR
146
1
Y
1
C
THR
147
A
THR
147
1
Y
1
C
VAL
148
A
VAL
148
1
Y
1
C
VAL
149
A
VAL
149
1
Y
1
C
CYS
150
A
CYS
150
1
Y
1
B
GLU
145
B
GLU
145
1
Y
1
B
THR
146
B
THR
146
1
Y
1
B
THR
147
B
THR
147
1
Y
1
B
VAL
148
B
VAL
148
1
Y
1
B
VAL
149
B
VAL
149
1
Y
1
B
CYS
150
B
CYS
150
1
Y
1
A
GLU
145
C
GLU
145
1
Y
1
A
THR
146
C
THR
146
1
Y
1
A
THR
147
C
THR
147
1
Y
1
A
VAL
148
C
VAL
148
1
Y
1
A
VAL
149
C
VAL
149
1
Y
1
A
CYS
150
C
CYS
150
1
Y
1
A
A
O
OG
GLU
SER
14
17
2.14
1
B
B
HIS
ALA
47
48
-142.38
1
C
SER
141
-170.62
136.93
1
B
TYR
6
-90.96
45.04
1
B
ALA
11
-163.17
-169.70
1
B
THR
91
-93.96
-60.50
1
A
ALA
11
-69.89
-179.85
1
A
SER
141
-172.10
144.15
N
Cryo-EM Structure of Hepatitis B virus T=3 capsid in complex with the fluorescent allosteric modulator HAP-TAMRA
1
N
N
1
N
N
1
N
N
2
N
N
C
TYR
6
A
TYR
6
HELX_P
C
GLY
10
A
GLY
10
5
AA1
5
C
THR
12
A
THR
12
HELX_P
C
LEU
19
A
LEU
19
1
AA2
8
C
PRO
20
A
PRO
20
HELX_P
C
PHE
24
A
PHE
24
5
AA3
5
C
SER
26
A
SER
26
HELX_P
C
TYR
38
A
TYR
38
1
AA4
13
C
TYR
38
A
TYR
38
HELX_P
C
GLU
43
A
GLU
43
1
AA5
6
C
SER
49
A
SER
49
HELX_P
C
ASN
75
A
ASN
75
1
AA6
27
C
ASP
78
A
ASP
78
HELX_P
C
VAL
93
A
VAL
93
1
AA7
16
C
GLY
94
A
GLY
94
HELX_P
C
ILE
126
A
ILE
126
1
AA8
33
B
GLU
14
B
GLU
14
HELX_P
B
PHE
18
B
PHE
18
5
AA9
5
B
SER
26
B
SER
26
HELX_P
B
TYR
38
B
TYR
38
1
AB1
13
B
TYR
38
B
TYR
38
HELX_P
B
GLU
43
B
GLU
43
1
AB2
6
B
SER
49
B
SER
49
HELX_P
B
LEU
76
B
LEU
76
1
AB3
28
B
ASP
78
B
ASP
78
HELX_P
B
GLN
99
B
GLN
99
1
AB4
22
B
GLN
99
B
GLN
99
HELX_P
B
GLY
111
B
GLY
111
1
AB5
13
B
GLY
111
B
GLY
111
HELX_P
B
THR
128
B
THR
128
1
AB6
18
B
PRO
129
B
PRO
129
HELX_P
B
ARG
133
B
ARG
133
5
AB7
5
A
GLU
14
C
GLU
14
HELX_P
A
PHE
18
C
PHE
18
5
AB8
5
A
SER
26
C
SER
26
HELX_P
A
TYR
38
C
TYR
38
1
AB9
13
A
TYR
38
C
TYR
38
HELX_P
A
GLU
43
C
GLU
43
1
AC1
6
A
SER
49
C
SER
49
HELX_P
A
ASN
75
C
ASN
75
1
AC2
27
A
ASP
78
C
ASP
78
HELX_P
A
PHE
97
C
PHE
97
1
AC3
20
A
PHE
97
C
PHE
97
HELX_P
A
GLY
111
C
GLY
111
1
AC4
15
A
GLY
111
C
GLY
111
HELX_P
A
THR
128
C
THR
128
1
AC5
18
VIRUS LIKE PARTICLE
capsid, CpAM, antiviral, fluorescent, VIRUS LIKE PARTICLE
CAPSD_HBVD1
UNP
1
1
P03147
MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGDLMTLATWVGTNLEDPA
SRDLVVSYVNTNVGLKFRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVV
1
149
6BVN
1
149
P03147
C
1
1
149
1
149
6BVN
1
149
P03147
B
1
1
149
1
149
6BVN
1
149
P03147
A
1
1
149
1
CYS
engineered mutation
ALA
48
6BVN
C
P03147
UNP
48
48
1
CYS
engineered mutation
ALA
61
6BVN
C
P03147
UNP
61
61
1
CYS
engineered mutation
ALA
107
6BVN
C
P03147
UNP
107
107
1
expression tag
CYS
150
6BVN
C
P03147
UNP
150
2
CYS
engineered mutation
ALA
48
6BVN
B
P03147
UNP
48
48
2
CYS
engineered mutation
ALA
61
6BVN
B
P03147
UNP
61
61
2
CYS
engineered mutation
ALA
107
6BVN
B
P03147
UNP
107
107
2
expression tag
CYS
150
6BVN
B
P03147
UNP
150
3
CYS
engineered mutation
ALA
48
6BVN
A
P03147
UNP
48
48
3
CYS
engineered mutation
ALA
61
6BVN
A
P03147
UNP
61
61
3
CYS
engineered mutation
ALA
107
6BVN
A
P03147
UNP
107
107
3
expression tag
CYS
150
6BVN
A
P03147
UNP
150
binding site for residue E9D B 201
B
E9D
201
Software
17
C
VAL
124
A
VAL
124
17
1_555
C
TYR
132
A
TYR
132
17
1_555
C
PRO
134
A
PRO
134
17
1_555
B
PHE
23
B
PHE
23
17
1_555
B
PRO
25
B
PRO
25
17
1_555
B
ASP
29
B
ASP
29
17
1_555
B
LEU
30
B
LEU
30
17
1_555
B
THR
33
B
THR
33
17
1_555
B
TRP
102
B
TRP
102
17
1_555
B
ILE
105
B
ILE
105
17
1_555
B
SER
106
B
SER
106
17
1_555
B
THR
109
B
THR
109
17
1_555
B
PHE
110
B
PHE
110
17
1_555
B
TYR
118
B
TYR
118
17
1_555
B
ASN
136
B
ASN
136
17
1_555
B
ILE
139
B
ILE
139
17
1_555
B
LEU
140
B
LEU
140
17
1_555