0.024538 -0.010935 0.004779 -0.000000 0.023117 -0.010276 0.000000 -0.000000 0.020035 0.000000 0.000000 0.000000 Liu, K. Bian, C. Tempel, W. Wernimont, A.K. Arrowsmith, C.H. Bountra, C. Edwards, A.M. Min, J. Structural Genomics Consortium (SGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 68.150 89.830 65.980 40.753 47.359 54.623 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN ATOM OR ION non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C Y 127 N C N 128 N N Y 129 N N Y 130 N C Y 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N P N 149 N O N 150 N O N 151 N O N 152 N C N 153 R C N 154 N O N 155 S C N 156 N O N 157 N C N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N C N 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C Y 193 N N Y 194 N C Y 195 N N Y 196 N C N 197 N C N 198 N O N 199 N N N 200 N C N 201 N N N 202 N N Y 203 N C N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N O N 219 N P N 220 N O N 221 N O N 222 N O N 223 N C N 224 R C N 225 N O N 226 S C N 227 N O N 228 N C N 229 R C N 230 N N N 231 N C N 232 N O N 233 N N N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 N C N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 S C N 308 N C N 309 N C N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N C N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 N C N 352 N C N 353 N C N 354 N C N 355 N N N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N S N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N N N 416 S C N 417 N C N 418 N O N 419 N C N 420 N C N 421 N C N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C N 437 N O N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N N N 447 S C N 448 N C N 449 N O N 450 R C N 451 N O N 452 N C N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N N N 464 S C N 465 N C N 466 N O N 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N N Y 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N C N 477 N O N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N N N 491 S C N 492 N C N 493 N O N 494 N C Y 495 N C Y 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C N 501 N O N 502 N O N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N N N 515 S C N 516 N C N 517 N O N 518 N C N 519 N C N 520 N C N 521 N O N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N sing Y 136 N sing Y 137 N doub N 138 N sing Y 139 N doub N 140 N sing N 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N sing Y 205 N sing Y 206 N doub N 207 N sing Y 208 N sing N 209 N sing Y 210 N doub N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N doub N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N doub N 464 N sing N 465 N sing N 466 N sing N 467 N sing Y 468 N doub Y 469 N sing Y 470 N sing N 471 N sing Y 472 N doub Y 473 N sing Y 474 N sing N 475 N sing Y 476 N sing Y 477 N doub N 478 N sing Y 479 N doub N 480 N sing Y 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N doub N 492 N sing N 493 N sing N 494 N sing N 495 N sing Y 496 N doub Y 497 N sing Y 498 N sing N 499 N sing Y 500 N doub N 501 N sing Y 502 N doub N 503 N sing Y 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N doub N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing Biochim Biophys Acta Gene Regul Mech 1876-4320 1862 194409 194409 10.1016/j.bbagrm.2019.194409 31356990 Plasticity at the DNA recognition site of the MeCP2 mCG-binding domain. 2019 10.2210/pdb6c1y/pdb pdb_00006c1y 100 1 CCD 2013-07-25 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 0.97945 1.0 23-ID-B APS 0.97945 SYNCHROTRON APS BEAMLINE 23-ID-B 9785.024 Methyl-CpG-binding protein 2 2 man polymer 3678.407 12-mer DNA 4 syn polymer UNKNOWN ATOM OR ION 3 syn non-polymer MeCp2 no no GSPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFT VTGRGS GSPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFT VTGRGS A,B polypeptide(L) no yes (DG)(DC)(DC)(DA)(DC)(5CM)(DG)(DG)(DT)(DG)(DG)(DC) GCCACCGGTGGC D,C,F,E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 86 MECP2 9606 Homo sapiens 562 Escherichia coli BL21(DE3)-V2R-pRARE2 Biological sequence pET28-MHL 1 2.57 52.1 VAPOR DIFFUSION 8.5 25% PEG3350, 0.1 M ammonium sulfate, 0.1 M tris 291 -2.049 1 19 D 1 C 12 1.336 D_DG1:DC12_C 1 -4.401 -0.066 0.052 -0.043 -7.907 1 19 D 2 C 11 -0.701 D_DC2:DG11_C 2 -7.118 0.023 0.291 0.070 -2.373 1 19 D 3 C 10 -1.923 D_DC3:DG10_C 3 -6.876 0.237 0.007 -0.153 -1.776 1 20 D 4 C 9 -0.750 D_DA4:DT9_C 4 -10.463 0.281 -0.073 -0.091 4.132 1 19 D 5 C 8 0.542 D_DC5:DG8_C 5 -6.201 0.193 -0.013 -0.167 4.699 1 19 D 6 C 7 1.136 D_5CM6:DG7_C 6 -2.720 0.319 -0.028 -0.142 -1.183 1 19 D 7 C 6 -3.636 D_DG7:5CM6_C 7 -3.910 -0.303 -0.120 -0.253 -2.600 1 19 D 8 C 5 -3.029 D_DG8:DC5_C 8 -8.273 -0.166 -0.153 -0.401 1.844 1 20 D 9 C 4 -4.293 D_DT9:DA4_C 9 -12.940 -0.399 -0.243 -0.284 1.710 1 19 D 10 C 3 -3.847 D_DG10:DC3_C 10 -7.619 -0.313 -0.215 -0.225 7.608 1 19 D 11 C 2 -1.618 D_DG11:DC2_C 11 -7.463 -0.075 0.078 0.122 2.289 1 19 D 12 C 1 0.987 D_DC12:DG1_C 12 -4.428 0.039 -0.108 0.007 0.893 1 19 F 1 E 12 -1.626 F_DG1:DC12_E 13 -2.328 -0.241 0.079 -0.040 -4.407 1 19 F 2 E 11 -4.510 F_DC2:DG11_E 14 -8.041 -0.199 0.283 0.038 1.346 1 19 F 3 E 10 -3.081 F_DC3:DG10_E 15 -9.703 -0.154 0.056 -0.209 -4.516 1 20 F 4 E 9 2.253 F_DA4:DT9_E 16 -9.464 -0.167 0.214 -0.276 1.867 1 19 F 5 E 8 1.959 F_DC5:DG8_E 17 -4.329 -0.217 0.204 0.016 -2.483 1 19 F 6 E 7 0.776 F_5CM6:DG7_E 18 -8.660 0.405 0.234 -0.257 -4.317 1 19 F 7 E 6 0.469 F_DG7:5CM6_E 19 -7.046 -0.481 -0.229 -0.202 -5.511 1 19 F 8 E 5 -0.950 F_DG8:DC5_E 20 -8.013 -0.054 -0.143 -0.117 -0.119 1 20 F 9 E 4 -1.767 F_DT9:DA4_E 21 -11.819 -0.125 -0.183 0.013 1.023 1 19 F 10 E 3 -2.840 F_DG10:DC3_E 22 -7.421 -0.015 -0.231 -0.096 7.329 1 19 F 11 E 2 -0.739 F_DG11:DC2_E 23 -7.254 0.230 0.089 0.112 2.211 1 19 F 12 E 1 2.277 F_DC12:DG1_E 24 -4.182 0.262 -0.092 -0.151 3.465 37.770 D D 1 2 -1.654 C C 12 11 3.401 -1.070 -0.848 -0.356 DD_DG1DC2:DG11DC12_CC 1 -3.016 4.664 37.639 -0.405 0.901 3.272 32.077 D D 2 3 6.050 C C 11 10 3.225 3.331 0.288 0.516 DD_DC2DC3:DG10DG11_CC 2 3.668 -6.663 31.702 0.335 0.137 3.409 42.865 D D 3 4 -0.124 C C 10 9 3.412 -0.091 -0.014 1.609 DD_DC3DA4:DT9DG10_CC 3 -0.423 0.579 42.863 2.211 -0.025 3.122 26.784 D D 4 5 5.595 C C 9 8 3.171 2.587 0.214 -0.265 DD_DA4DC5:DG8DT9_CC 4 -0.992 2.146 26.643 -1.218 -0.710 3.410 34.147 D D 5 6 8.640 C C 8 7 3.435 5.053 0.245 0.016 DD_DC55CM6:DG7DG8_CC 5 2.073 -3.544 33.720 -0.815 -0.072 3.568 40.650 D D 6 7 4.337 C C 7 6 3.566 3.010 -0.311 0.156 DD_5CM6DG7:5CM6DG7_CC 6 0.025 -0.036 40.544 -0.140 0.451 3.432 36.348 D D 7 8 9.339 C C 6 5 3.463 5.798 -0.326 -0.025 DD_DG7DG8:DC55CM6_CC 7 -2.391 3.851 35.821 -0.899 0.168 3.115 27.612 D D 8 9 6.616 C C 5 4 3.176 3.150 -0.187 -0.276 DD_DG8DT9:DA4DC5_CC 8 1.078 -2.264 27.415 -1.319 0.644 3.454 43.140 D D 9 10 1.985 C C 4 3 3.400 1.459 0.168 1.604 DD_DT9DG10:DC3DA4_CC 9 1.150 -1.565 43.102 2.031 -0.110 3.250 32.554 D D 10 11 5.299 C C 3 2 3.212 2.961 -0.244 0.483 DD_DG10DG11:DC2DC3_CC 10 -3.690 6.605 32.217 0.348 -0.204 3.447 37.758 D D 11 12 -2.146 C C 2 1 3.389 -1.388 0.856 -0.355 DD_DG11DC12:DG1DC2_CC 11 2.508 -3.879 37.653 -0.362 -0.985 3.469 37.397 F F 1 2 -2.576 E E 12 11 3.403 -1.650 -0.878 -0.371 FF_DG1DC2:DG11DC12_EE 12 -2.716 4.240 37.267 -0.350 0.994 3.258 30.709 F F 2 3 5.117 E E 11 10 3.214 2.702 0.274 0.516 FF_DC2DC3:DG10DG11_EE 13 3.174 -6.011 30.432 0.448 0.103 3.404 48.699 F F 3 4 -4.898 E E 10 9 3.635 -4.035 0.395 2.748 FF_DC3DA4:DT9DG10_EE 14 -0.664 0.806 48.537 3.665 -0.534 3.105 26.068 F F 4 5 7.302 E E 9 8 3.165 3.285 0.191 -0.245 FF_DA4DC5:DG8DT9_EE 15 -0.586 1.302 25.857 -1.408 -0.577 3.517 33.696 F F 5 6 2.971 E E 8 7 3.505 1.720 0.630 -0.333 FF_DC55CM6:DG7DG8_EE 16 2.251 -3.888 33.580 -0.875 -0.693 3.351 40.632 F F 6 7 -1.541 E E 7 6 3.372 -1.067 -0.051 -0.327 FF_5CM6DG7:5CM6DG7_EE 17 4.913 -7.092 40.332 -0.348 0.637 3.426 37.177 F F 7 8 7.488 E E 6 5 3.427 4.755 -0.462 -0.016 FF_DG7DG8:DC55CM6_EE 18 -3.452 5.436 36.726 -0.693 0.240 3.102 27.273 F F 8 9 6.486 E E 5 4 3.157 3.051 -0.211 -0.254 FF_DG8DT9:DA4DC5_EE 19 0.855 -1.818 27.092 -1.270 0.652 3.402 42.660 F F 9 10 1.160 E E 4 3 3.371 0.844 0.098 1.601 FF_DT9DG10:DC3DA4_EE 20 1.588 -2.184 42.624 2.113 0.030 3.241 32.403 F F 10 11 4.572 E E 3 2 3.205 2.544 -0.260 0.480 FF_DG10DG11:DC2DC3_EE 21 -3.748 6.736 32.093 0.416 -0.188 3.444 37.357 F F 11 12 -2.139 E E 2 1 3.388 -1.369 0.856 -0.351 FF_DG11DC12:DG1DC2_EE 22 2.344 -3.663 37.261 -0.359 -1.013 Structural Genomics Consortium SGC citation citation_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Database references Data collection Database references Refinement description 1 0 2018-02-14 1 1 2019-11-20 1 2 2023-10-04 _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id Y RCSB Y RCSB 2018-01-05 REL REL UNX UNKNOWN ATOM OR ION synthetic dna 32630 synthetic construct sample 1 12 3C2I Protein coordinates from PDB entry 3c2i. DNA coordinates from a currently unpublished model. PDB experimental model UNX 3 3 UNX UNX 201 A UNX 1 3 UNX UNX 201 B UNX 4 3 UNX UNX 202 B n 1 79 A n 2 80 A n 3 81 A n 4 82 A n 5 83 A n 6 84 A n 7 85 A n 8 86 A n 9 87 A n 10 88 A n 11 89 A n 12 90 A n 13 91 A GLY 92 n 14 GLY 92 A PRO 93 n 15 PRO 93 A MET 94 n 16 MET 94 A TYR 95 n 17 TYR 95 A ASP 96 n 18 ASP 96 A ASP 97 n 19 ASP 97 A PRO 98 n 20 PRO 98 A THR 99 n 21 THR 99 A LEU 100 n 22 LEU 100 A PRO 101 n 23 PRO 101 A GLU 102 n 24 GLU 102 A GLY 103 n 25 GLY 103 A TRP 104 n 26 TRP 104 A THR 105 n 27 THR 105 A ARG 106 n 28 ARG 106 A LYS 107 n 29 LYS 107 A LEU 108 n 30 LEU 108 A LYS 109 n 31 LYS 109 A GLN 110 n 32 GLN 110 A ARG 111 n 33 ARG 111 A LYS 112 n 34 LYS 112 A SER 113 n 35 SER 113 A GLY 114 n 36 GLY 114 A ARG 115 n 37 ARG 115 A SER 116 n 38 SER 116 A ALA 117 n 39 ALA 117 A GLY 118 n 40 GLY 118 A LYS 119 n 41 LYS 119 A TYR 120 n 42 TYR 120 A ASP 121 n 43 ASP 121 A VAL 122 n 44 VAL 122 A TYR 123 n 45 TYR 123 A LEU 124 n 46 LEU 124 A ILE 125 n 47 ILE 125 A ASN 126 n 48 ASN 126 A PRO 127 n 49 PRO 127 A GLN 128 n 50 GLN 128 A GLY 129 n 51 GLY 129 A LYS 130 n 52 LYS 130 A ALA 131 n 53 ALA 131 A PHE 132 n 54 PHE 132 A ARG 133 n 55 ARG 133 A SER 134 n 56 SER 134 A LYS 135 n 57 LYS 135 A VAL 136 n 58 VAL 136 A GLU 137 n 59 GLU 137 A LEU 138 n 60 LEU 138 A ILE 139 n 61 ILE 139 A ALA 140 n 62 ALA 140 A TYR 141 n 63 TYR 141 A PHE 142 n 64 PHE 142 A GLU 143 n 65 GLU 143 A LYS 144 n 66 LYS 144 A VAL 145 n 67 VAL 145 A GLY 146 n 68 GLY 146 A ASP 147 n 69 ASP 147 A THR 148 n 70 THR 148 A SER 149 n 71 SER 149 A LEU 150 n 72 LEU 150 A ASP 151 n 73 ASP 151 A PRO 152 n 74 PRO 152 A ASN 153 n 75 ASN 153 A ASP 154 n 76 ASP 154 A PHE 155 n 77 PHE 155 A ASP 156 n 78 ASP 156 A PHE 157 n 79 PHE 157 A THR 158 n 80 THR 158 A VAL 159 n 81 VAL 159 A THR 160 n 82 THR 160 A GLY 161 n 83 GLY 161 A ARG 162 n 84 ARG 162 A n 85 163 A n 86 164 A n 1 79 B n 2 80 B n 3 81 B n 4 82 B n 5 83 B n 6 84 B n 7 85 B n 8 86 B n 9 87 B n 10 88 B n 11 89 B n 12 90 B n 13 91 B GLY 92 n 14 GLY 92 B PRO 93 n 15 PRO 93 B MET 94 n 16 MET 94 B TYR 95 n 17 TYR 95 B ASP 96 n 18 ASP 96 B ASP 97 n 19 ASP 97 B PRO 98 n 20 PRO 98 B THR 99 n 21 THR 99 B LEU 100 n 22 LEU 100 B PRO 101 n 23 PRO 101 B GLU 102 n 24 GLU 102 B GLY 103 n 25 GLY 103 B TRP 104 n 26 TRP 104 B THR 105 n 27 THR 105 B ARG 106 n 28 ARG 106 B LYS 107 n 29 LYS 107 B LEU 108 n 30 LEU 108 B LYS 109 n 31 LYS 109 B GLN 110 n 32 GLN 110 B ARG 111 n 33 ARG 111 B LYS 112 n 34 LYS 112 B SER 113 n 35 SER 113 B GLY 114 n 36 GLY 114 B ARG 115 n 37 ARG 115 B SER 116 n 38 SER 116 B ALA 117 n 39 ALA 117 B GLY 118 n 40 GLY 118 B LYS 119 n 41 LYS 119 B TYR 120 n 42 TYR 120 B ASP 121 n 43 ASP 121 B VAL 122 n 44 VAL 122 B TYR 123 n 45 TYR 123 B LEU 124 n 46 LEU 124 B ILE 125 n 47 ILE 125 B ASN 126 n 48 ASN 126 B PRO 127 n 49 PRO 127 B GLN 128 n 50 GLN 128 B GLY 129 n 51 GLY 129 B LYS 130 n 52 LYS 130 B ALA 131 n 53 ALA 131 B PHE 132 n 54 PHE 132 B ARG 133 n 55 ARG 133 B SER 134 n 56 SER 134 B LYS 135 n 57 LYS 135 B VAL 136 n 58 VAL 136 B GLU 137 n 59 GLU 137 B LEU 138 n 60 LEU 138 B ILE 139 n 61 ILE 139 B ALA 140 n 62 ALA 140 B TYR 141 n 63 TYR 141 B PHE 142 n 64 PHE 142 B GLU 143 n 65 GLU 143 B LYS 144 n 66 LYS 144 B VAL 145 n 67 VAL 145 B GLY 146 n 68 GLY 146 B ASP 147 n 69 ASP 147 B THR 148 n 70 THR 148 B SER 149 n 71 SER 149 B LEU 150 n 72 LEU 150 B ASP 151 n 73 ASP 151 B PRO 152 n 74 PRO 152 B ASN 153 n 75 ASN 153 B ASP 154 n 76 ASP 154 B PHE 155 n 77 PHE 155 B ASP 156 n 78 ASP 156 B PHE 157 n 79 PHE 157 B THR 158 n 80 THR 158 B VAL 159 n 81 VAL 159 B THR 160 n 82 THR 160 B GLY 161 n 83 GLY 161 B ARG 162 n 84 ARG 162 B n 85 163 B n 86 164 B DG 1 n 1 DG 1 D DC 2 n 2 DC 2 D DC 3 n 3 DC 3 D DA 4 n 4 DA 4 D DC 5 n 5 DC 5 D 5CM 6 n 6 5CM 6 D DG 7 n 7 DG 7 D DG 8 n 8 DG 8 D DT 9 n 9 DT 9 D DG 10 n 10 DG 10 D DG 11 n 11 DG 11 D DC 12 n 12 DC 12 D DG 1 n 1 DG 1 C DC 2 n 2 DC 2 C DC 3 n 3 DC 3 C DA 4 n 4 DA 4 C DC 5 n 5 DC 5 C 5CM 6 n 6 5CM 6 C DG 7 n 7 DG 7 C DG 8 n 8 DG 8 C DT 9 n 9 DT 9 C DG 10 n 10 DG 10 C DG 11 n 11 DG 11 C DC 12 n 12 DC 12 C DG 1 n 1 DG 1 F DC 2 n 2 DC 2 F DC 3 n 3 DC 3 F DA 4 n 4 DA 4 F DC 5 n 5 DC 5 F 5CM 6 n 6 5CM 6 F DG 7 n 7 DG 7 F DG 8 n 8 DG 8 F DT 9 n 9 DT 9 F DG 10 n 10 DG 10 F DG 11 n 11 DG 11 F DC 12 n 12 DC 12 F DG 1 n 1 DG 1 E DC 2 n 2 DC 2 E DC 3 n 3 DC 3 E DA 4 n 4 DA 4 E DC 5 n 5 DC 5 E 5CM 6 n 6 5CM 6 E DG 7 n 7 DG 7 E DG 8 n 8 DG 8 E DT 9 n 9 DT 9 E DG 10 n 10 DG 10 E DG 11 n 11 DG 11 E DC 12 n 12 DC 12 E 2.1335 1.5150 0.9137 5.1585 1.1946 3.5052 0.0303 0.3033 0.2144 -0.3564 -0.0511 0.0293 -0.4348 -0.0523 0.0208 0.1847 -0.0437 0.0528 0.1540 0.0118 0.0363 refined -19.0698 -3.8257 -1.7757 X-RAY DIFFRACTION 1.4423 -0.0350 -0.4220 2.6151 -1.2665 5.2667 0.0555 -0.0616 -0.3840 0.1817 -0.0623 0.1332 0.6087 0.1969 0.0068 0.2112 -0.0766 0.0167 0.1129 -0.0215 0.1193 refined -1.1200 11.1002 -19.1937 X-RAY DIFFRACTION 4.3789 0.0552 -1.7127 3.3956 0.8300 2.6672 -0.0899 -0.1053 -0.3371 0.1536 0.0374 0.0220 0.1759 0.0942 0.0525 0.0489 -0.0626 0.0194 0.1447 -0.0229 0.0467 refined -19.0327 -16.7158 5.5462 X-RAY DIFFRACTION 5.8765 -2.2126 0.8141 3.1565 0.4461 1.8385 -0.2925 -0.1689 -0.1347 0.1325 0.1474 0.0704 0.1386 0.0725 0.1452 0.0720 -0.0219 -0.0142 0.1505 -0.0044 0.0952 refined -19.3406 -15.4596 6.7377 X-RAY DIFFRACTION 5.7195 0.2250 0.3179 2.3492 0.4317 1.9706 -0.0263 0.0375 0.5236 -0.0157 -0.0008 0.0588 -0.1253 -0.0157 0.0270 0.0204 -0.0355 0.0134 0.1689 -0.0394 0.0680 refined -2.5348 25.7439 -23.6403 X-RAY DIFFRACTION 6.4529 -0.8994 1.0675 1.9790 -0.8955 2.2131 -0.0652 -0.2544 0.0656 0.0463 -0.0237 0.0357 0.0120 -0.0315 0.0889 0.0527 0.0074 0.0471 0.1582 -0.0683 0.0797 refined -2.6367 25.5056 -22.0011 X-RAY DIFFRACTION A 92 A 162 X-RAY DIFFRACTION 1 B 92 B 162 X-RAY DIFFRACTION 2 D 1 D 12 X-RAY DIFFRACTION 3 C 1 C 12 X-RAY DIFFRACTION 4 F 1 F 12 X-RAY DIFFRACTION 5 E 1 E 12 X-RAY DIFFRACTION 6 author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric PDB entry 3c2i homology 3750 -10 7680 3660 -6 7690 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 105 A N THR 27 A O ILE 125 A O ILE 47 A N LEU 124 A N LEU 46 A O PHE 132 A O PHE 54 B N THR 105 B N THR 27 B O ILE 125 B O ILE 47 B N LEU 124 B N LEU 46 B O PHE 132 B O PHE 54 1 A CD LYS 107 A CD LYS 29 1 Y 1 A CE LYS 107 A CE LYS 29 1 Y 1 A NZ LYS 107 A NZ LYS 29 1 Y 1 A CG ARG 115 A CG ARG 37 1 Y 1 A CD ARG 115 A CD ARG 37 1 Y 1 A NE ARG 115 A NE ARG 37 1 Y 1 A CZ ARG 115 A CZ ARG 37 1 Y 1 A NH1 ARG 115 A NH1 ARG 37 1 Y 1 A NH2 ARG 115 A NH2 ARG 37 1 Y 1 A CD LYS 119 A CD LYS 41 1 Y 1 A CE LYS 119 A CE LYS 41 1 Y 1 A NZ LYS 119 A NZ LYS 41 1 Y 1 A CD GLN 128 A CD GLN 50 1 Y 1 A OE1 GLN 128 A OE1 GLN 50 1 Y 1 A NE2 GLN 128 A NE2 GLN 50 1 Y 1 A CG ARG 162 A CG ARG 84 1 Y 1 A CD ARG 162 A CD ARG 84 1 Y 1 A NE ARG 162 A NE ARG 84 1 Y 1 A CZ ARG 162 A CZ ARG 84 1 Y 1 A NH1 ARG 162 A NH1 ARG 84 1 Y 1 A NH2 ARG 162 A NH2 ARG 84 1 Y 1 B CG GLU 102 B CG GLU 24 1 Y 1 B CD GLU 102 B CD GLU 24 1 Y 1 B OE1 GLU 102 B OE1 GLU 24 1 Y 1 B OE2 GLU 102 B OE2 GLU 24 1 Y 1 B CD LYS 107 B CD LYS 29 1 Y 1 B CE LYS 107 B CE LYS 29 1 Y 1 B NZ LYS 107 B NZ LYS 29 1 Y 1 B CD LYS 109 B CD LYS 31 1 Y 1 B CE LYS 109 B CE LYS 31 1 Y 1 B NZ LYS 109 B NZ LYS 31 1 Y 1 B NZ LYS 112 B NZ LYS 34 1 Y 1 B NE ARG 115 B NE ARG 37 1 Y 1 B CZ ARG 115 B CZ ARG 37 1 Y 1 B NH1 ARG 115 B NH1 ARG 37 1 Y 1 B NH2 ARG 115 B NH2 ARG 37 1 Y 1 B CD GLN 128 B CD GLN 50 1 Y 1 B OE1 GLN 128 B OE1 GLN 50 1 Y 1 B NE2 GLN 128 B NE2 GLN 50 1 Y 1 B CD LYS 144 B CD LYS 66 1 Y 1 B CE LYS 144 B CE LYS 66 1 Y 1 B NZ LYS 144 B NZ LYS 66 1 Y 1 B CD1 LEU 150 B CD1 LEU 72 1 Y 1 B CD2 LEU 150 B CD2 LEU 72 1 Y 1 B CG ARG 162 B CG ARG 84 1 Y 1 B CD ARG 162 B CD ARG 84 1 Y 1 B NE ARG 162 B NE ARG 84 1 Y 1 B CZ ARG 162 B CZ ARG 84 1 Y 1 B NH1 ARG 162 B NH1 ARG 84 1 Y 1 B NH2 ARG 162 B NH2 ARG 84 1 Y 1 A GLY 79 A GLY 1 1 Y 1 A SER 80 A SER 2 1 Y 1 A PRO 81 A PRO 3 1 Y 1 A LYS 82 A LYS 4 1 Y 1 A GLN 83 A GLN 5 1 Y 1 A ARG 84 A ARG 6 1 Y 1 A ARG 85 A ARG 7 1 Y 1 A SER 86 A SER 8 1 Y 1 A ILE 87 A ILE 9 1 Y 1 A ILE 88 A ILE 10 1 Y 1 A ARG 89 A ARG 11 1 Y 1 A ASP 90 A ASP 12 1 Y 1 A ARG 91 A ARG 13 1 Y 1 A GLY 163 A GLY 85 1 Y 1 A SER 164 A SER 86 1 Y 1 B GLY 79 B GLY 1 1 Y 1 B SER 80 B SER 2 1 Y 1 B PRO 81 B PRO 3 1 Y 1 B LYS 82 B LYS 4 1 Y 1 B GLN 83 B GLN 5 1 Y 1 B ARG 84 B ARG 6 1 Y 1 B ARG 85 B ARG 7 1 Y 1 B SER 86 B SER 8 1 Y 1 B ILE 87 B ILE 9 1 Y 1 B ILE 88 B ILE 10 1 Y 1 B ARG 89 B ARG 11 1 Y 1 B ASP 90 B ASP 12 1 Y 1 B ARG 91 B ARG 13 1 Y 1 B GLY 163 B GLY 85 1 Y 1 B SER 164 B SER 86 1 Y 1 E E O3' P DC 5CM 5 6 0.074 0.012 1.607 1.681 Y 1 A GLN 128 -69.16 10.00 1 B GLN 128 -69.32 11.75 104.590 65.5440 40.200 -4.2200 -1.9300 1.8600 1.7400 -2.2600 -2.3500 0.9550 0.9250 phenix.refine was used at intermediate stages of refinement. coot was used for interactive model building. Model geometry was assessed on the molprobity server. 0.2857 0.2306 0.2334 2.3000 39.8500 785 13799 5.4000 96.3000 25.5210 0.2570 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.3350 0.2620 0.8000 0.8000 1.2000 Protein coordinates from PDB entry 3c2i. DNA coordinates from a currently unpublished model. 2.3000 39.8500 0 2069 42.92 3 976 1090 190 0.016 0.016 2210 0.003 0.020 1534 1.669 1.610 3196 1.316 3.000 3576 5.819 5.000 140 30.819 23.878 49 15.157 15.000 171 28.612 15.000 6 0.089 0.200 303 0.010 0.021 1824 0.001 0.020 474 2.294 5.098 566 2.296 5.098 565 3.472 7.638 704 1 A 1 4006 X-RAY DIFFRACTION interatomic distance 0.090 0.050 2 B 1 4006 X-RAY DIFFRACTION interatomic distance 0.090 0.050 1 D 2 2080 X-RAY DIFFRACTION interatomic distance 0.030 0.050 2 C 2 2080 X-RAY DIFFRACTION interatomic distance 0.030 0.050 1 D 3 2038 X-RAY DIFFRACTION interatomic distance 0.080 0.050 2 F 3 2038 X-RAY DIFFRACTION interatomic distance 0.080 0.050 1 D 4 2050 X-RAY DIFFRACTION interatomic distance 0.060 0.050 2 E 4 2050 X-RAY DIFFRACTION interatomic distance 0.060 0.050 1 C 5 2030 X-RAY DIFFRACTION interatomic distance 0.090 0.050 2 F 5 2030 X-RAY DIFFRACTION interatomic distance 0.090 0.050 1 C 6 2070 X-RAY DIFFRACTION interatomic distance 0.050 0.050 2 E 6 2070 X-RAY DIFFRACTION interatomic distance 0.050 0.050 1 F 7 2012 X-RAY DIFFRACTION interatomic distance 0.100 0.050 2 E 7 2012 X-RAY DIFFRACTION interatomic distance 0.100 0.050 0.4430 0.3500 2.3600 96 837 933 20 83.4500 2.300 39.850 6C1Y 14585 0.992 0.068 0.060 0.091 1 10.100 31664 2.200 5 96.300 0.449 2.300 2.380 2617 1262 0.718 0.397 0.601 1 2.400 2.100 84.200 0.047 8.910 39.850 548 255 0.983 0.044 0.065 1 30.500 2.100 96.200 data scaling Aimless 0.5.32 refinement REFMAC 5.8.0158 data extraction PDB_EXTRACT 3.22 data reduction HKL-3000 phasing PHASER N mbd of human mecp2 in complex with methylated DNA 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N A SER 134 A SER 56 HELX_P A GLY 146 A GLY 68 1 AA1 13 A ASP 151 A ASP 73 HELX_P A PHE 155 A PHE 77 5 AA2 5 B SER 134 B SER 56 HELX_P B GLY 146 B GLY 68 1 AA3 13 B ASP 151 B ASP 73 HELX_P B PHE 155 B PHE 77 5 AA4 5 covale 1.541 both D DC 5 C O3' DC 5 1_555 D 5CM 6 C P 5CM 6 1_555 covale 1.607 both D 5CM 6 C O3' 5CM 6 1_555 D DG 7 C P DG 7 1_555 covale 1.636 both C DC 5 D O3' DC 5 1_555 C 5CM 6 D P 5CM 6 1_555 covale 1.581 both C 5CM 6 D O3' 5CM 6 1_555 C DG 7 D P DG 7 1_555 covale 1.579 both F DC 5 E O3' DC 5 1_555 F 5CM 6 E P 5CM 6 1_555 covale 1.635 both F 5CM 6 E O3' 5CM 6 1_555 F DG 7 E P DG 7 1_555 covale 1.681 both E DC 5 F O3' DC 5 1_555 E 5CM 6 F P 5CM 6 1_555 covale 1.571 both E 5CM 6 F O3' 5CM 6 1_555 E DG 7 F P DG 7 1_555 hydrog WATSON-CRICK D DG 1 C N1 DG 1 1_555 C DC 12 D N3 DC 12 1_555 hydrog WATSON-CRICK D DG 1 C N2 DG 1 1_555 C DC 12 D O2 DC 12 1_555 hydrog WATSON-CRICK D DG 1 C O6 DG 1 1_555 C DC 12 D N4 DC 12 1_555 hydrog WATSON-CRICK D DC 2 C N3 DC 2 1_555 C DG 11 D N1 DG 11 1_555 hydrog WATSON-CRICK D DC 2 C N4 DC 2 1_555 C DG 11 D O6 DG 11 1_555 hydrog WATSON-CRICK D DC 2 C O2 DC 2 1_555 C DG 11 D N2 DG 11 1_555 hydrog WATSON-CRICK D DC 3 C N3 DC 3 1_555 C DG 10 D N1 DG 10 1_555 hydrog WATSON-CRICK D DC 3 C N4 DC 3 1_555 C DG 10 D O6 DG 10 1_555 hydrog WATSON-CRICK D DC 3 C O2 DC 3 1_555 C DG 10 D N2 DG 10 1_555 hydrog WATSON-CRICK D DA 4 C N1 DA 4 1_555 C DT 9 D N3 DT 9 1_555 hydrog WATSON-CRICK D DA 4 C N6 DA 4 1_555 C DT 9 D O4 DT 9 1_555 hydrog WATSON-CRICK D DC 5 C N3 DC 5 1_555 C DG 8 D N1 DG 8 1_555 hydrog WATSON-CRICK D DC 5 C N4 DC 5 1_555 C DG 8 D O6 DG 8 1_555 hydrog WATSON-CRICK D DC 5 C O2 DC 5 1_555 C DG 8 D N2 DG 8 1_555 hydrog WATSON-CRICK D 5CM 6 C N3 5CM 6 1_555 C DG 7 D N1 DG 7 1_555 hydrog WATSON-CRICK D 5CM 6 C N4 5CM 6 1_555 C DG 7 D O6 DG 7 1_555 hydrog WATSON-CRICK D 5CM 6 C O2 5CM 6 1_555 C DG 7 D N2 DG 7 1_555 hydrog WATSON-CRICK D DG 7 C N1 DG 7 1_555 C 5CM 6 D N3 5CM 6 1_555 hydrog WATSON-CRICK D DG 7 C N2 DG 7 1_555 C 5CM 6 D O2 5CM 6 1_555 hydrog WATSON-CRICK D DG 7 C O6 DG 7 1_555 C 5CM 6 D N4 5CM 6 1_555 hydrog WATSON-CRICK D DG 8 C N1 DG 8 1_555 C DC 5 D N3 DC 5 1_555 hydrog WATSON-CRICK D DG 8 C N2 DG 8 1_555 C DC 5 D O2 DC 5 1_555 hydrog WATSON-CRICK D DG 8 C O6 DG 8 1_555 C DC 5 D N4 DC 5 1_555 hydrog WATSON-CRICK D DT 9 C N3 DT 9 1_555 C DA 4 D N1 DA 4 1_555 hydrog WATSON-CRICK D DT 9 C O4 DT 9 1_555 C DA 4 D N6 DA 4 1_555 hydrog WATSON-CRICK D DG 10 C N1 DG 10 1_555 C DC 3 D N3 DC 3 1_555 hydrog WATSON-CRICK D DG 10 C N2 DG 10 1_555 C DC 3 D O2 DC 3 1_555 hydrog WATSON-CRICK D DG 10 C O6 DG 10 1_555 C DC 3 D N4 DC 3 1_555 hydrog WATSON-CRICK D DG 11 C N1 DG 11 1_555 C DC 2 D N3 DC 2 1_555 hydrog WATSON-CRICK D DG 11 C N2 DG 11 1_555 C DC 2 D O2 DC 2 1_555 hydrog WATSON-CRICK D DG 11 C O6 DG 11 1_555 C DC 2 D N4 DC 2 1_555 hydrog WATSON-CRICK D DC 12 C N3 DC 12 1_555 C DG 1 D N1 DG 1 1_555 hydrog WATSON-CRICK D DC 12 C N4 DC 12 1_555 C DG 1 D O6 DG 1 1_555 hydrog WATSON-CRICK D DC 12 C O2 DC 12 1_555 C DG 1 D N2 DG 1 1_555 hydrog WATSON-CRICK F DG 1 E N1 DG 1 1_555 E DC 12 F N3 DC 12 1_555 hydrog WATSON-CRICK F DG 1 E N2 DG 1 1_555 E DC 12 F O2 DC 12 1_555 hydrog WATSON-CRICK F DG 1 E O6 DG 1 1_555 E DC 12 F N4 DC 12 1_555 hydrog WATSON-CRICK F DC 2 E N3 DC 2 1_555 E DG 11 F N1 DG 11 1_555 hydrog WATSON-CRICK F DC 2 E N4 DC 2 1_555 E DG 11 F O6 DG 11 1_555 hydrog WATSON-CRICK F DC 2 E O2 DC 2 1_555 E DG 11 F N2 DG 11 1_555 hydrog WATSON-CRICK F DC 3 E N3 DC 3 1_555 E DG 10 F N1 DG 10 1_555 hydrog WATSON-CRICK F DC 3 E N4 DC 3 1_555 E DG 10 F O6 DG 10 1_555 hydrog WATSON-CRICK F DC 3 E O2 DC 3 1_555 E DG 10 F N2 DG 10 1_555 hydrog WATSON-CRICK F DA 4 E N1 DA 4 1_555 E DT 9 F N3 DT 9 1_555 hydrog WATSON-CRICK F DA 4 E N6 DA 4 1_555 E DT 9 F O4 DT 9 1_555 hydrog WATSON-CRICK F DC 5 E N3 DC 5 1_555 E DG 8 F N1 DG 8 1_555 hydrog WATSON-CRICK F DC 5 E N4 DC 5 1_555 E DG 8 F O6 DG 8 1_555 hydrog WATSON-CRICK F DC 5 E O2 DC 5 1_555 E DG 8 F N2 DG 8 1_555 hydrog WATSON-CRICK F 5CM 6 E N3 5CM 6 1_555 E DG 7 F N1 DG 7 1_555 hydrog WATSON-CRICK F 5CM 6 E N4 5CM 6 1_555 E DG 7 F O6 DG 7 1_555 hydrog WATSON-CRICK F 5CM 6 E O2 5CM 6 1_555 E DG 7 F N2 DG 7 1_555 hydrog WATSON-CRICK F DG 7 E N1 DG 7 1_555 E 5CM 6 F N3 5CM 6 1_555 hydrog WATSON-CRICK F DG 7 E N2 DG 7 1_555 E 5CM 6 F O2 5CM 6 1_555 hydrog WATSON-CRICK F DG 7 E O6 DG 7 1_555 E 5CM 6 F N4 5CM 6 1_555 hydrog WATSON-CRICK F DG 8 E N1 DG 8 1_555 E DC 5 F N3 DC 5 1_555 hydrog WATSON-CRICK F DG 8 E N2 DG 8 1_555 E DC 5 F O2 DC 5 1_555 hydrog WATSON-CRICK F DG 8 E O6 DG 8 1_555 E DC 5 F N4 DC 5 1_555 hydrog WATSON-CRICK F DT 9 E N3 DT 9 1_555 E DA 4 F N1 DA 4 1_555 hydrog WATSON-CRICK F DT 9 E O4 DT 9 1_555 E DA 4 F N6 DA 4 1_555 hydrog WATSON-CRICK F DG 10 E N1 DG 10 1_555 E DC 3 F N3 DC 3 1_555 hydrog WATSON-CRICK F DG 10 E N2 DG 10 1_555 E DC 3 F O2 DC 3 1_555 hydrog WATSON-CRICK F DG 10 E O6 DG 10 1_555 E DC 3 F N4 DC 3 1_555 hydrog WATSON-CRICK F DG 11 E N1 DG 11 1_555 E DC 2 F N3 DC 2 1_555 hydrog WATSON-CRICK F DG 11 E N2 DG 11 1_555 E DC 2 F O2 DC 2 1_555 hydrog WATSON-CRICK F DG 11 E O6 DG 11 1_555 E DC 2 F N4 DC 2 1_555 hydrog WATSON-CRICK F DC 12 E N3 DC 12 1_555 E DG 1 F N1 DG 1 1_555 hydrog WATSON-CRICK F DC 12 E N4 DC 12 1_555 E DG 1 F O6 DG 1 1_555 hydrog WATSON-CRICK F DC 12 E O2 DC 12 1_555 E DG 1 F N2 DG 1 1_555 DNA BINDING PROTEIN/DNA mbd, dna methylation, Structural Genomics, Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex A B D C D F D E C F C E F E A GLY 92 A GLY 14 A ARG 162 A ARG 84 0 B GLY 92 B GLY 14 B ARG 162 B ARG 84 0 D DG 1 C DG 1 D DC 12 C DC 12 0 C DG 1 D DG 1 C DC 12 D DC 12 0 D DG 1 C DG 1 D DC 12 C DC 12 0 F DG 1 E DG 1 F DC 12 E DC 12 0 D DG 1 C DG 1 D DC 12 C DC 12 0 E DG 1 F DG 1 E DC 12 F DC 12 0 C DG 1 D DG 1 C DC 12 D DC 12 0 F DG 1 E DG 1 F DC 12 E DC 12 0 C DG 1 D DG 1 C DC 12 D DC 12 0 E DG 1 F DG 1 E DC 12 F DC 12 0 F DG 1 E DG 1 F DC 12 E DC 12 0 E DG 1 F DG 1 E DC 12 F DC 12 0 MECP2_HUMAN UNP 1 80 P51608 SPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTV TGRGS 6C1Y PDB 2 1 6C1Y 80 164 6C1Y 80 164 P51608 A 1 2 86 80 164 6C1Y 80 164 P51608 B 1 2 86 1 12 6C1Y 1 12 6C1Y D 2 1 12 1 12 6C1Y 1 12 6C1Y C 2 1 12 1 12 6C1Y 1 12 6C1Y F 2 1 12 1 12 6C1Y 1 12 6C1Y E 2 1 12 1 expression tag GLY 79 6C1Y A P51608 UNP 1 2 expression tag GLY 79 6C1Y B P51608 UNP 1 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A THR 105 A THR 27 A GLN 110 A GLN 32 A TYR 120 A TYR 42 A ILE 125 A ILE 47 A ALA 131 A ALA 53 A PHE 132 A PHE 54 B THR 105 B THR 27 B GLN 110 B GLN 32 B TYR 120 B TYR 42 B ILE 125 B ILE 47 B ALA 131 B ALA 53 B PHE 132 B PHE 54 binding site for Di-nucleotide DC C 5 and 5CM C 6 C DC 5 Software 12 binding site for Di-nucleotide 5CM C 6 and DG C 7 C 5CM 6 Software 14 binding site for Di-nucleotide DC D 5 and 5CM D 6 D DC 5 Software 8 binding site for Di-nucleotide 5CM D 6 and DG D 7 D 5CM 6 Software 11 binding site for Di-nucleotide DC E 5 and 5CM E 6 E DC 5 Software 9 binding site for Di-nucleotide 5CM E 6 and DG E 7 E 5CM 6 Software 12 binding site for Di-nucleotide DC F 5 and 5CM F 6 F DC 5 Software 10 binding site for Di-nucleotide 5CM F 6 and DG F 7 F 5CM 6 Software 13 A LYS 109 A LYS 31 12 1_555 A ARG 111 A ARG 33 12 1_555 A LYS 112 A LYS 34 12 1_555 A SER 113 A SER 35 12 1_555 A SER 116 A SER 38 12 1_555 A ASP 121 A ASP 43 12 1_555 A TYR 123 A TYR 45 12 1_555 A ARG 133 A ARG 55 12 1_555 C DA 4 D DA 4 12 1_555 C DG 7 D DG 7 12 1_555 D DG 7 C DG 7 12 1_555 D DG 8 C DG 8 12 1_555 A ARG 111 A ARG 33 14 1_555 A LYS 112 A LYS 34 14 1_555 A SER 113 A SER 35 14 1_555 A GLY 114 A GLY 36 14 1_555 A ARG 115 A ARG 37 14 1_555 A SER 116 A SER 38 14 1_555 A ASP 121 A ASP 43 14 1_555 A ARG 133 A ARG 55 14 1_555 C DC 5 D DC 5 14 1_555 C DG 8 D DG 8 14 1_555 D DC 5 C DC 5 14 1_555 D 5CM 6 C 5CM 6 14 1_555 D DG 7 C DG 7 14 1_555 D DG 8 C DG 8 14 1_555 A ARG 133 A ARG 55 8 1_555 A SER 134 A SER 56 8 1_555 B GLN 110 B GLN 32 8 1_546 B LYS 112 B LYS 34 8 1_546 C DG 7 D DG 7 8 1_555 C DG 8 D DG 8 8 1_555 D DA 4 C DA 4 8 1_555 D DG 7 C DG 7 8 1_555 A ARG 133 A ARG 55 11 1_555 A SER 134 A SER 56 11 1_555 B TYR 95 B TYR 17 11 1_546 B GLN 110 B GLN 32 11 1_546 B LYS 112 B LYS 34 11 1_546 B TYR 120 B TYR 42 11 1_546 C DC 5 D DC 5 11 1_555 C 5CM 6 D 5CM 6 11 1_555 C DG 7 D DG 7 11 1_555 D DC 5 C DC 5 11 1_555 D DG 8 C DG 8 11 1_555 B ARG 111 B ARG 33 9 1_555 B LYS 112 B LYS 34 9 1_555 B SER 113 B SER 35 9 1_555 B SER 116 B SER 38 9 1_555 B ASP 121 B ASP 43 9 1_555 E DA 4 F DA 4 9 1_555 E DG 7 F DG 7 9 1_555 F DG 7 E DG 7 9 1_555 F DG 8 E DG 8 9 1_555 B ARG 111 B ARG 33 12 1_555 B LYS 112 B LYS 34 12 1_555 B SER 113 B SER 35 12 1_555 B GLY 114 B GLY 36 12 1_555 B ARG 115 B ARG 37 12 1_555 B SER 116 B SER 38 12 1_555 B ASP 121 B ASP 43 12 1_555 E DC 5 F DC 5 12 1_555 E DG 8 F DG 8 12 1_555 F 5CM 6 E 5CM 6 12 1_555 F DG 7 E DG 7 12 1_555 F DG 8 E DG 8 12 1_555 A GLN 110 A GLN 32 10 1_565 A LYS 112 A LYS 34 10 1_565 B ARG 133 B ARG 55 10 1_555 B SER 134 B SER 56 10 1_555 B VAL 136 B VAL 58 10 1_555 B PHE 157 B PHE 79 10 1_555 E DG 7 F DG 7 10 1_555 E DG 8 F DG 8 10 1_555 F DA 4 E DA 4 10 1_555 F DG 7 E DG 7 10 1_555 A TYR 95 A TYR 17 13 1_565 A GLN 110 A GLN 32 13 1_565 A LYS 112 A LYS 34 13 1_565 A TYR 120 A TYR 42 13 1_565 B ARG 133 B ARG 55 13 1_555 B SER 134 B SER 56 13 1_555 B VAL 136 B VAL 58 13 1_555 E DC 5 F DC 5 13 1_555 E 5CM 6 F 5CM 6 13 1_555 E DG 7 F DG 7 13 1_555 E DG 8 F DG 8 13 1_555 F DC 5 E DC 5 13 1_555 F DG 8 E DG 8 13 1_555 1 P 1