0.024538
-0.010935
0.004779
-0.000000
0.023117
-0.010276
0.000000
-0.000000
0.020035
0.000000
0.000000
0.000000
Liu, K.
Bian, C.
Tempel, W.
Wernimont, A.K.
Arrowsmith, C.H.
Bountra, C.
Edwards, A.M.
Min, J.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
68.150
89.830
65.980
40.753
47.359
54.623
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN ATOM OR ION
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
Y
123
N
N
Y
124
N
C
Y
125
N
N
Y
126
N
C
Y
127
N
C
N
128
N
N
Y
129
N
N
Y
130
N
C
Y
131
N
N
Y
132
N
C
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
P
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
O
N
155
S
C
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
N
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
Y
193
N
N
Y
194
N
C
Y
195
N
N
Y
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
C
N
201
N
N
N
202
N
N
Y
203
N
C
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
P
N
220
N
O
N
221
N
O
N
222
N
O
N
223
N
C
N
224
R
C
N
225
N
O
N
226
S
C
N
227
N
O
N
228
N
C
N
229
R
C
N
230
N
N
N
231
N
C
N
232
N
O
N
233
N
N
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
S
C
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
N
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
S
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
O
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
R
C
N
451
N
O
N
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
N
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
N
N
491
S
C
N
492
N
C
N
493
N
O
N
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
N
501
N
O
N
502
N
O
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
N
N
515
S
C
N
516
N
C
N
517
N
O
N
518
N
C
N
519
N
C
N
520
N
C
N
521
N
O
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
Y
131
N
sing
Y
132
N
sing
Y
133
N
doub
N
134
N
sing
Y
135
N
sing
Y
136
N
sing
Y
137
N
doub
N
138
N
sing
Y
139
N
doub
N
140
N
sing
N
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
Y
204
N
sing
Y
205
N
sing
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
doub
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
Y
468
N
doub
Y
469
N
sing
Y
470
N
sing
N
471
N
sing
Y
472
N
doub
Y
473
N
sing
Y
474
N
sing
N
475
N
sing
Y
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
doub
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
Y
496
N
doub
Y
497
N
sing
Y
498
N
sing
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
doub
N
503
N
sing
Y
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
doub
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
Biochim Biophys Acta Gene Regul Mech
1876-4320
1862
194409
194409
10.1016/j.bbagrm.2019.194409
31356990
Plasticity at the DNA recognition site of the MeCP2 mCG-binding domain.
2019
10.2210/pdb6c1y/pdb
pdb_00006c1y
100
1
CCD
2013-07-25
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97945
1.0
23-ID-B
APS
0.97945
SYNCHROTRON
APS BEAMLINE 23-ID-B
9785.024
Methyl-CpG-binding protein 2
2
man
polymer
3678.407
12-mer DNA
4
syn
polymer
UNKNOWN ATOM OR ION
3
syn
non-polymer
MeCp2
no
no
GSPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFT
VTGRGS
GSPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFT
VTGRGS
A,B
polypeptide(L)
no
yes
(DG)(DC)(DC)(DA)(DC)(5CM)(DG)(DG)(DT)(DG)(DG)(DC)
GCCACCGGTGGC
D,C,F,E
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
86
MECP2
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)-V2R-pRARE2
Biological sequence
pET28-MHL
1
2.57
52.1
VAPOR DIFFUSION
8.5
25% PEG3350, 0.1 M ammonium sulfate, 0.1 M tris
291
-2.049
1
19
D
1
C
12
1.336
D_DG1:DC12_C
1
-4.401
-0.066
0.052
-0.043
-7.907
1
19
D
2
C
11
-0.701
D_DC2:DG11_C
2
-7.118
0.023
0.291
0.070
-2.373
1
19
D
3
C
10
-1.923
D_DC3:DG10_C
3
-6.876
0.237
0.007
-0.153
-1.776
1
20
D
4
C
9
-0.750
D_DA4:DT9_C
4
-10.463
0.281
-0.073
-0.091
4.132
1
19
D
5
C
8
0.542
D_DC5:DG8_C
5
-6.201
0.193
-0.013
-0.167
4.699
1
19
D
6
C
7
1.136
D_5CM6:DG7_C
6
-2.720
0.319
-0.028
-0.142
-1.183
1
19
D
7
C
6
-3.636
D_DG7:5CM6_C
7
-3.910
-0.303
-0.120
-0.253
-2.600
1
19
D
8
C
5
-3.029
D_DG8:DC5_C
8
-8.273
-0.166
-0.153
-0.401
1.844
1
20
D
9
C
4
-4.293
D_DT9:DA4_C
9
-12.940
-0.399
-0.243
-0.284
1.710
1
19
D
10
C
3
-3.847
D_DG10:DC3_C
10
-7.619
-0.313
-0.215
-0.225
7.608
1
19
D
11
C
2
-1.618
D_DG11:DC2_C
11
-7.463
-0.075
0.078
0.122
2.289
1
19
D
12
C
1
0.987
D_DC12:DG1_C
12
-4.428
0.039
-0.108
0.007
0.893
1
19
F
1
E
12
-1.626
F_DG1:DC12_E
13
-2.328
-0.241
0.079
-0.040
-4.407
1
19
F
2
E
11
-4.510
F_DC2:DG11_E
14
-8.041
-0.199
0.283
0.038
1.346
1
19
F
3
E
10
-3.081
F_DC3:DG10_E
15
-9.703
-0.154
0.056
-0.209
-4.516
1
20
F
4
E
9
2.253
F_DA4:DT9_E
16
-9.464
-0.167
0.214
-0.276
1.867
1
19
F
5
E
8
1.959
F_DC5:DG8_E
17
-4.329
-0.217
0.204
0.016
-2.483
1
19
F
6
E
7
0.776
F_5CM6:DG7_E
18
-8.660
0.405
0.234
-0.257
-4.317
1
19
F
7
E
6
0.469
F_DG7:5CM6_E
19
-7.046
-0.481
-0.229
-0.202
-5.511
1
19
F
8
E
5
-0.950
F_DG8:DC5_E
20
-8.013
-0.054
-0.143
-0.117
-0.119
1
20
F
9
E
4
-1.767
F_DT9:DA4_E
21
-11.819
-0.125
-0.183
0.013
1.023
1
19
F
10
E
3
-2.840
F_DG10:DC3_E
22
-7.421
-0.015
-0.231
-0.096
7.329
1
19
F
11
E
2
-0.739
F_DG11:DC2_E
23
-7.254
0.230
0.089
0.112
2.211
1
19
F
12
E
1
2.277
F_DC12:DG1_E
24
-4.182
0.262
-0.092
-0.151
3.465
37.770
D
D
1
2
-1.654
C
C
12
11
3.401
-1.070
-0.848
-0.356
DD_DG1DC2:DG11DC12_CC
1
-3.016
4.664
37.639
-0.405
0.901
3.272
32.077
D
D
2
3
6.050
C
C
11
10
3.225
3.331
0.288
0.516
DD_DC2DC3:DG10DG11_CC
2
3.668
-6.663
31.702
0.335
0.137
3.409
42.865
D
D
3
4
-0.124
C
C
10
9
3.412
-0.091
-0.014
1.609
DD_DC3DA4:DT9DG10_CC
3
-0.423
0.579
42.863
2.211
-0.025
3.122
26.784
D
D
4
5
5.595
C
C
9
8
3.171
2.587
0.214
-0.265
DD_DA4DC5:DG8DT9_CC
4
-0.992
2.146
26.643
-1.218
-0.710
3.410
34.147
D
D
5
6
8.640
C
C
8
7
3.435
5.053
0.245
0.016
DD_DC55CM6:DG7DG8_CC
5
2.073
-3.544
33.720
-0.815
-0.072
3.568
40.650
D
D
6
7
4.337
C
C
7
6
3.566
3.010
-0.311
0.156
DD_5CM6DG7:5CM6DG7_CC
6
0.025
-0.036
40.544
-0.140
0.451
3.432
36.348
D
D
7
8
9.339
C
C
6
5
3.463
5.798
-0.326
-0.025
DD_DG7DG8:DC55CM6_CC
7
-2.391
3.851
35.821
-0.899
0.168
3.115
27.612
D
D
8
9
6.616
C
C
5
4
3.176
3.150
-0.187
-0.276
DD_DG8DT9:DA4DC5_CC
8
1.078
-2.264
27.415
-1.319
0.644
3.454
43.140
D
D
9
10
1.985
C
C
4
3
3.400
1.459
0.168
1.604
DD_DT9DG10:DC3DA4_CC
9
1.150
-1.565
43.102
2.031
-0.110
3.250
32.554
D
D
10
11
5.299
C
C
3
2
3.212
2.961
-0.244
0.483
DD_DG10DG11:DC2DC3_CC
10
-3.690
6.605
32.217
0.348
-0.204
3.447
37.758
D
D
11
12
-2.146
C
C
2
1
3.389
-1.388
0.856
-0.355
DD_DG11DC12:DG1DC2_CC
11
2.508
-3.879
37.653
-0.362
-0.985
3.469
37.397
F
F
1
2
-2.576
E
E
12
11
3.403
-1.650
-0.878
-0.371
FF_DG1DC2:DG11DC12_EE
12
-2.716
4.240
37.267
-0.350
0.994
3.258
30.709
F
F
2
3
5.117
E
E
11
10
3.214
2.702
0.274
0.516
FF_DC2DC3:DG10DG11_EE
13
3.174
-6.011
30.432
0.448
0.103
3.404
48.699
F
F
3
4
-4.898
E
E
10
9
3.635
-4.035
0.395
2.748
FF_DC3DA4:DT9DG10_EE
14
-0.664
0.806
48.537
3.665
-0.534
3.105
26.068
F
F
4
5
7.302
E
E
9
8
3.165
3.285
0.191
-0.245
FF_DA4DC5:DG8DT9_EE
15
-0.586
1.302
25.857
-1.408
-0.577
3.517
33.696
F
F
5
6
2.971
E
E
8
7
3.505
1.720
0.630
-0.333
FF_DC55CM6:DG7DG8_EE
16
2.251
-3.888
33.580
-0.875
-0.693
3.351
40.632
F
F
6
7
-1.541
E
E
7
6
3.372
-1.067
-0.051
-0.327
FF_5CM6DG7:5CM6DG7_EE
17
4.913
-7.092
40.332
-0.348
0.637
3.426
37.177
F
F
7
8
7.488
E
E
6
5
3.427
4.755
-0.462
-0.016
FF_DG7DG8:DC55CM6_EE
18
-3.452
5.436
36.726
-0.693
0.240
3.102
27.273
F
F
8
9
6.486
E
E
5
4
3.157
3.051
-0.211
-0.254
FF_DG8DT9:DA4DC5_EE
19
0.855
-1.818
27.092
-1.270
0.652
3.402
42.660
F
F
9
10
1.160
E
E
4
3
3.371
0.844
0.098
1.601
FF_DT9DG10:DC3DA4_EE
20
1.588
-2.184
42.624
2.113
0.030
3.241
32.403
F
F
10
11
4.572
E
E
3
2
3.205
2.544
-0.260
0.480
FF_DG10DG11:DC2DC3_EE
21
-3.748
6.736
32.093
0.416
-0.188
3.444
37.357
F
F
11
12
-2.139
E
E
2
1
3.388
-1.369
0.856
-0.351
FF_DG11DC12:DG1DC2_EE
22
2.344
-3.663
37.261
-0.359
-1.013
Structural Genomics Consortium
SGC
citation
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ncs_dom_lim
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2018-02-14
1
1
2019-11-20
1
2
2023-10-04
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
Y
RCSB
Y
RCSB
2018-01-05
REL
REL
UNX
UNKNOWN ATOM OR ION
synthetic dna
32630
synthetic construct
sample
1
12
3C2I
Protein coordinates from PDB entry 3c2i. DNA coordinates from a currently unpublished model.
PDB
experimental model
UNX
3
3
UNX
UNX
201
A
UNX
1
3
UNX
UNX
201
B
UNX
4
3
UNX
UNX
202
B
n
1
79
A
n
2
80
A
n
3
81
A
n
4
82
A
n
5
83
A
n
6
84
A
n
7
85
A
n
8
86
A
n
9
87
A
n
10
88
A
n
11
89
A
n
12
90
A
n
13
91
A
GLY
92
n
14
GLY
92
A
PRO
93
n
15
PRO
93
A
MET
94
n
16
MET
94
A
TYR
95
n
17
TYR
95
A
ASP
96
n
18
ASP
96
A
ASP
97
n
19
ASP
97
A
PRO
98
n
20
PRO
98
A
THR
99
n
21
THR
99
A
LEU
100
n
22
LEU
100
A
PRO
101
n
23
PRO
101
A
GLU
102
n
24
GLU
102
A
GLY
103
n
25
GLY
103
A
TRP
104
n
26
TRP
104
A
THR
105
n
27
THR
105
A
ARG
106
n
28
ARG
106
A
LYS
107
n
29
LYS
107
A
LEU
108
n
30
LEU
108
A
LYS
109
n
31
LYS
109
A
GLN
110
n
32
GLN
110
A
ARG
111
n
33
ARG
111
A
LYS
112
n
34
LYS
112
A
SER
113
n
35
SER
113
A
GLY
114
n
36
GLY
114
A
ARG
115
n
37
ARG
115
A
SER
116
n
38
SER
116
A
ALA
117
n
39
ALA
117
A
GLY
118
n
40
GLY
118
A
LYS
119
n
41
LYS
119
A
TYR
120
n
42
TYR
120
A
ASP
121
n
43
ASP
121
A
VAL
122
n
44
VAL
122
A
TYR
123
n
45
TYR
123
A
LEU
124
n
46
LEU
124
A
ILE
125
n
47
ILE
125
A
ASN
126
n
48
ASN
126
A
PRO
127
n
49
PRO
127
A
GLN
128
n
50
GLN
128
A
GLY
129
n
51
GLY
129
A
LYS
130
n
52
LYS
130
A
ALA
131
n
53
ALA
131
A
PHE
132
n
54
PHE
132
A
ARG
133
n
55
ARG
133
A
SER
134
n
56
SER
134
A
LYS
135
n
57
LYS
135
A
VAL
136
n
58
VAL
136
A
GLU
137
n
59
GLU
137
A
LEU
138
n
60
LEU
138
A
ILE
139
n
61
ILE
139
A
ALA
140
n
62
ALA
140
A
TYR
141
n
63
TYR
141
A
PHE
142
n
64
PHE
142
A
GLU
143
n
65
GLU
143
A
LYS
144
n
66
LYS
144
A
VAL
145
n
67
VAL
145
A
GLY
146
n
68
GLY
146
A
ASP
147
n
69
ASP
147
A
THR
148
n
70
THR
148
A
SER
149
n
71
SER
149
A
LEU
150
n
72
LEU
150
A
ASP
151
n
73
ASP
151
A
PRO
152
n
74
PRO
152
A
ASN
153
n
75
ASN
153
A
ASP
154
n
76
ASP
154
A
PHE
155
n
77
PHE
155
A
ASP
156
n
78
ASP
156
A
PHE
157
n
79
PHE
157
A
THR
158
n
80
THR
158
A
VAL
159
n
81
VAL
159
A
THR
160
n
82
THR
160
A
GLY
161
n
83
GLY
161
A
ARG
162
n
84
ARG
162
A
n
85
163
A
n
86
164
A
n
1
79
B
n
2
80
B
n
3
81
B
n
4
82
B
n
5
83
B
n
6
84
B
n
7
85
B
n
8
86
B
n
9
87
B
n
10
88
B
n
11
89
B
n
12
90
B
n
13
91
B
GLY
92
n
14
GLY
92
B
PRO
93
n
15
PRO
93
B
MET
94
n
16
MET
94
B
TYR
95
n
17
TYR
95
B
ASP
96
n
18
ASP
96
B
ASP
97
n
19
ASP
97
B
PRO
98
n
20
PRO
98
B
THR
99
n
21
THR
99
B
LEU
100
n
22
LEU
100
B
PRO
101
n
23
PRO
101
B
GLU
102
n
24
GLU
102
B
GLY
103
n
25
GLY
103
B
TRP
104
n
26
TRP
104
B
THR
105
n
27
THR
105
B
ARG
106
n
28
ARG
106
B
LYS
107
n
29
LYS
107
B
LEU
108
n
30
LEU
108
B
LYS
109
n
31
LYS
109
B
GLN
110
n
32
GLN
110
B
ARG
111
n
33
ARG
111
B
LYS
112
n
34
LYS
112
B
SER
113
n
35
SER
113
B
GLY
114
n
36
GLY
114
B
ARG
115
n
37
ARG
115
B
SER
116
n
38
SER
116
B
ALA
117
n
39
ALA
117
B
GLY
118
n
40
GLY
118
B
LYS
119
n
41
LYS
119
B
TYR
120
n
42
TYR
120
B
ASP
121
n
43
ASP
121
B
VAL
122
n
44
VAL
122
B
TYR
123
n
45
TYR
123
B
LEU
124
n
46
LEU
124
B
ILE
125
n
47
ILE
125
B
ASN
126
n
48
ASN
126
B
PRO
127
n
49
PRO
127
B
GLN
128
n
50
GLN
128
B
GLY
129
n
51
GLY
129
B
LYS
130
n
52
LYS
130
B
ALA
131
n
53
ALA
131
B
PHE
132
n
54
PHE
132
B
ARG
133
n
55
ARG
133
B
SER
134
n
56
SER
134
B
LYS
135
n
57
LYS
135
B
VAL
136
n
58
VAL
136
B
GLU
137
n
59
GLU
137
B
LEU
138
n
60
LEU
138
B
ILE
139
n
61
ILE
139
B
ALA
140
n
62
ALA
140
B
TYR
141
n
63
TYR
141
B
PHE
142
n
64
PHE
142
B
GLU
143
n
65
GLU
143
B
LYS
144
n
66
LYS
144
B
VAL
145
n
67
VAL
145
B
GLY
146
n
68
GLY
146
B
ASP
147
n
69
ASP
147
B
THR
148
n
70
THR
148
B
SER
149
n
71
SER
149
B
LEU
150
n
72
LEU
150
B
ASP
151
n
73
ASP
151
B
PRO
152
n
74
PRO
152
B
ASN
153
n
75
ASN
153
B
ASP
154
n
76
ASP
154
B
PHE
155
n
77
PHE
155
B
ASP
156
n
78
ASP
156
B
PHE
157
n
79
PHE
157
B
THR
158
n
80
THR
158
B
VAL
159
n
81
VAL
159
B
THR
160
n
82
THR
160
B
GLY
161
n
83
GLY
161
B
ARG
162
n
84
ARG
162
B
n
85
163
B
n
86
164
B
DG
1
n
1
DG
1
D
DC
2
n
2
DC
2
D
DC
3
n
3
DC
3
D
DA
4
n
4
DA
4
D
DC
5
n
5
DC
5
D
5CM
6
n
6
5CM
6
D
DG
7
n
7
DG
7
D
DG
8
n
8
DG
8
D
DT
9
n
9
DT
9
D
DG
10
n
10
DG
10
D
DG
11
n
11
DG
11
D
DC
12
n
12
DC
12
D
DG
1
n
1
DG
1
C
DC
2
n
2
DC
2
C
DC
3
n
3
DC
3
C
DA
4
n
4
DA
4
C
DC
5
n
5
DC
5
C
5CM
6
n
6
5CM
6
C
DG
7
n
7
DG
7
C
DG
8
n
8
DG
8
C
DT
9
n
9
DT
9
C
DG
10
n
10
DG
10
C
DG
11
n
11
DG
11
C
DC
12
n
12
DC
12
C
DG
1
n
1
DG
1
F
DC
2
n
2
DC
2
F
DC
3
n
3
DC
3
F
DA
4
n
4
DA
4
F
DC
5
n
5
DC
5
F
5CM
6
n
6
5CM
6
F
DG
7
n
7
DG
7
F
DG
8
n
8
DG
8
F
DT
9
n
9
DT
9
F
DG
10
n
10
DG
10
F
DG
11
n
11
DG
11
F
DC
12
n
12
DC
12
F
DG
1
n
1
DG
1
E
DC
2
n
2
DC
2
E
DC
3
n
3
DC
3
E
DA
4
n
4
DA
4
E
DC
5
n
5
DC
5
E
5CM
6
n
6
5CM
6
E
DG
7
n
7
DG
7
E
DG
8
n
8
DG
8
E
DT
9
n
9
DT
9
E
DG
10
n
10
DG
10
E
DG
11
n
11
DG
11
E
DC
12
n
12
DC
12
E
2.1335
1.5150
0.9137
5.1585
1.1946
3.5052
0.0303
0.3033
0.2144
-0.3564
-0.0511
0.0293
-0.4348
-0.0523
0.0208
0.1847
-0.0437
0.0528
0.1540
0.0118
0.0363
refined
-19.0698
-3.8257
-1.7757
X-RAY DIFFRACTION
1.4423
-0.0350
-0.4220
2.6151
-1.2665
5.2667
0.0555
-0.0616
-0.3840
0.1817
-0.0623
0.1332
0.6087
0.1969
0.0068
0.2112
-0.0766
0.0167
0.1129
-0.0215
0.1193
refined
-1.1200
11.1002
-19.1937
X-RAY DIFFRACTION
4.3789
0.0552
-1.7127
3.3956
0.8300
2.6672
-0.0899
-0.1053
-0.3371
0.1536
0.0374
0.0220
0.1759
0.0942
0.0525
0.0489
-0.0626
0.0194
0.1447
-0.0229
0.0467
refined
-19.0327
-16.7158
5.5462
X-RAY DIFFRACTION
5.8765
-2.2126
0.8141
3.1565
0.4461
1.8385
-0.2925
-0.1689
-0.1347
0.1325
0.1474
0.0704
0.1386
0.0725
0.1452
0.0720
-0.0219
-0.0142
0.1505
-0.0044
0.0952
refined
-19.3406
-15.4596
6.7377
X-RAY DIFFRACTION
5.7195
0.2250
0.3179
2.3492
0.4317
1.9706
-0.0263
0.0375
0.5236
-0.0157
-0.0008
0.0588
-0.1253
-0.0157
0.0270
0.0204
-0.0355
0.0134
0.1689
-0.0394
0.0680
refined
-2.5348
25.7439
-23.6403
X-RAY DIFFRACTION
6.4529
-0.8994
1.0675
1.9790
-0.8955
2.2131
-0.0652
-0.2544
0.0656
0.0463
-0.0237
0.0357
0.0120
-0.0315
0.0889
0.0527
0.0074
0.0471
0.1582
-0.0683
0.0797
refined
-2.6367
25.5056
-22.0011
X-RAY DIFFRACTION
A
92
A
162
X-RAY DIFFRACTION
1
B
92
B
162
X-RAY DIFFRACTION
2
D
1
D
12
X-RAY DIFFRACTION
3
C
1
C
12
X-RAY DIFFRACTION
4
F
1
F
12
X-RAY DIFFRACTION
5
E
1
E
12
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
PDB entry 3c2i
homology
3750
-10
7680
3660
-6
7690
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
105
A
N
THR
27
A
O
ILE
125
A
O
ILE
47
A
N
LEU
124
A
N
LEU
46
A
O
PHE
132
A
O
PHE
54
B
N
THR
105
B
N
THR
27
B
O
ILE
125
B
O
ILE
47
B
N
LEU
124
B
N
LEU
46
B
O
PHE
132
B
O
PHE
54
1
A
CD
LYS
107
A
CD
LYS
29
1
Y
1
A
CE
LYS
107
A
CE
LYS
29
1
Y
1
A
NZ
LYS
107
A
NZ
LYS
29
1
Y
1
A
CG
ARG
115
A
CG
ARG
37
1
Y
1
A
CD
ARG
115
A
CD
ARG
37
1
Y
1
A
NE
ARG
115
A
NE
ARG
37
1
Y
1
A
CZ
ARG
115
A
CZ
ARG
37
1
Y
1
A
NH1
ARG
115
A
NH1
ARG
37
1
Y
1
A
NH2
ARG
115
A
NH2
ARG
37
1
Y
1
A
CD
LYS
119
A
CD
LYS
41
1
Y
1
A
CE
LYS
119
A
CE
LYS
41
1
Y
1
A
NZ
LYS
119
A
NZ
LYS
41
1
Y
1
A
CD
GLN
128
A
CD
GLN
50
1
Y
1
A
OE1
GLN
128
A
OE1
GLN
50
1
Y
1
A
NE2
GLN
128
A
NE2
GLN
50
1
Y
1
A
CG
ARG
162
A
CG
ARG
84
1
Y
1
A
CD
ARG
162
A
CD
ARG
84
1
Y
1
A
NE
ARG
162
A
NE
ARG
84
1
Y
1
A
CZ
ARG
162
A
CZ
ARG
84
1
Y
1
A
NH1
ARG
162
A
NH1
ARG
84
1
Y
1
A
NH2
ARG
162
A
NH2
ARG
84
1
Y
1
B
CG
GLU
102
B
CG
GLU
24
1
Y
1
B
CD
GLU
102
B
CD
GLU
24
1
Y
1
B
OE1
GLU
102
B
OE1
GLU
24
1
Y
1
B
OE2
GLU
102
B
OE2
GLU
24
1
Y
1
B
CD
LYS
107
B
CD
LYS
29
1
Y
1
B
CE
LYS
107
B
CE
LYS
29
1
Y
1
B
NZ
LYS
107
B
NZ
LYS
29
1
Y
1
B
CD
LYS
109
B
CD
LYS
31
1
Y
1
B
CE
LYS
109
B
CE
LYS
31
1
Y
1
B
NZ
LYS
109
B
NZ
LYS
31
1
Y
1
B
NZ
LYS
112
B
NZ
LYS
34
1
Y
1
B
NE
ARG
115
B
NE
ARG
37
1
Y
1
B
CZ
ARG
115
B
CZ
ARG
37
1
Y
1
B
NH1
ARG
115
B
NH1
ARG
37
1
Y
1
B
NH2
ARG
115
B
NH2
ARG
37
1
Y
1
B
CD
GLN
128
B
CD
GLN
50
1
Y
1
B
OE1
GLN
128
B
OE1
GLN
50
1
Y
1
B
NE2
GLN
128
B
NE2
GLN
50
1
Y
1
B
CD
LYS
144
B
CD
LYS
66
1
Y
1
B
CE
LYS
144
B
CE
LYS
66
1
Y
1
B
NZ
LYS
144
B
NZ
LYS
66
1
Y
1
B
CD1
LEU
150
B
CD1
LEU
72
1
Y
1
B
CD2
LEU
150
B
CD2
LEU
72
1
Y
1
B
CG
ARG
162
B
CG
ARG
84
1
Y
1
B
CD
ARG
162
B
CD
ARG
84
1
Y
1
B
NE
ARG
162
B
NE
ARG
84
1
Y
1
B
CZ
ARG
162
B
CZ
ARG
84
1
Y
1
B
NH1
ARG
162
B
NH1
ARG
84
1
Y
1
B
NH2
ARG
162
B
NH2
ARG
84
1
Y
1
A
GLY
79
A
GLY
1
1
Y
1
A
SER
80
A
SER
2
1
Y
1
A
PRO
81
A
PRO
3
1
Y
1
A
LYS
82
A
LYS
4
1
Y
1
A
GLN
83
A
GLN
5
1
Y
1
A
ARG
84
A
ARG
6
1
Y
1
A
ARG
85
A
ARG
7
1
Y
1
A
SER
86
A
SER
8
1
Y
1
A
ILE
87
A
ILE
9
1
Y
1
A
ILE
88
A
ILE
10
1
Y
1
A
ARG
89
A
ARG
11
1
Y
1
A
ASP
90
A
ASP
12
1
Y
1
A
ARG
91
A
ARG
13
1
Y
1
A
GLY
163
A
GLY
85
1
Y
1
A
SER
164
A
SER
86
1
Y
1
B
GLY
79
B
GLY
1
1
Y
1
B
SER
80
B
SER
2
1
Y
1
B
PRO
81
B
PRO
3
1
Y
1
B
LYS
82
B
LYS
4
1
Y
1
B
GLN
83
B
GLN
5
1
Y
1
B
ARG
84
B
ARG
6
1
Y
1
B
ARG
85
B
ARG
7
1
Y
1
B
SER
86
B
SER
8
1
Y
1
B
ILE
87
B
ILE
9
1
Y
1
B
ILE
88
B
ILE
10
1
Y
1
B
ARG
89
B
ARG
11
1
Y
1
B
ASP
90
B
ASP
12
1
Y
1
B
ARG
91
B
ARG
13
1
Y
1
B
GLY
163
B
GLY
85
1
Y
1
B
SER
164
B
SER
86
1
Y
1
E
E
O3'
P
DC
5CM
5
6
0.074
0.012
1.607
1.681
Y
1
A
GLN
128
-69.16
10.00
1
B
GLN
128
-69.32
11.75
104.590
65.5440
40.200
-4.2200
-1.9300
1.8600
1.7400
-2.2600
-2.3500
0.9550
0.9250
phenix.refine was used at intermediate stages of refinement. coot was used for interactive model building. Model geometry was assessed on the molprobity server.
0.2857
0.2306
0.2334
2.3000
39.8500
785
13799
5.4000
96.3000
25.5210
0.2570
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.3350
0.2620
0.8000
0.8000
1.2000
Protein coordinates from PDB entry 3c2i. DNA coordinates from a currently unpublished model.
2.3000
39.8500
0
2069
42.92
3
976
1090
190
0.016
0.016
2210
0.003
0.020
1534
1.669
1.610
3196
1.316
3.000
3576
5.819
5.000
140
30.819
23.878
49
15.157
15.000
171
28.612
15.000
6
0.089
0.200
303
0.010
0.021
1824
0.001
0.020
474
2.294
5.098
566
2.296
5.098
565
3.472
7.638
704
1
A
1
4006
X-RAY DIFFRACTION
interatomic distance
0.090
0.050
2
B
1
4006
X-RAY DIFFRACTION
interatomic distance
0.090
0.050
1
D
2
2080
X-RAY DIFFRACTION
interatomic distance
0.030
0.050
2
C
2
2080
X-RAY DIFFRACTION
interatomic distance
0.030
0.050
1
D
3
2038
X-RAY DIFFRACTION
interatomic distance
0.080
0.050
2
F
3
2038
X-RAY DIFFRACTION
interatomic distance
0.080
0.050
1
D
4
2050
X-RAY DIFFRACTION
interatomic distance
0.060
0.050
2
E
4
2050
X-RAY DIFFRACTION
interatomic distance
0.060
0.050
1
C
5
2030
X-RAY DIFFRACTION
interatomic distance
0.090
0.050
2
F
5
2030
X-RAY DIFFRACTION
interatomic distance
0.090
0.050
1
C
6
2070
X-RAY DIFFRACTION
interatomic distance
0.050
0.050
2
E
6
2070
X-RAY DIFFRACTION
interatomic distance
0.050
0.050
1
F
7
2012
X-RAY DIFFRACTION
interatomic distance
0.100
0.050
2
E
7
2012
X-RAY DIFFRACTION
interatomic distance
0.100
0.050
0.4430
0.3500
2.3600
96
837
933
20
83.4500
2.300
39.850
6C1Y
14585
0.992
0.068
0.060
0.091
1
10.100
31664
2.200
5
96.300
0.449
2.300
2.380
2617
1262
0.718
0.397
0.601
1
2.400
2.100
84.200
0.047
8.910
39.850
548
255
0.983
0.044
0.065
1
30.500
2.100
96.200
data scaling
Aimless
0.5.32
refinement
REFMAC
5.8.0158
data extraction
PDB_EXTRACT
3.22
data reduction
HKL-3000
phasing
PHASER
N
mbd of human mecp2 in complex with methylated DNA
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
A
SER
134
A
SER
56
HELX_P
A
GLY
146
A
GLY
68
1
AA1
13
A
ASP
151
A
ASP
73
HELX_P
A
PHE
155
A
PHE
77
5
AA2
5
B
SER
134
B
SER
56
HELX_P
B
GLY
146
B
GLY
68
1
AA3
13
B
ASP
151
B
ASP
73
HELX_P
B
PHE
155
B
PHE
77
5
AA4
5
covale
1.541
both
D
DC
5
C
O3'
DC
5
1_555
D
5CM
6
C
P
5CM
6
1_555
covale
1.607
both
D
5CM
6
C
O3'
5CM
6
1_555
D
DG
7
C
P
DG
7
1_555
covale
1.636
both
C
DC
5
D
O3'
DC
5
1_555
C
5CM
6
D
P
5CM
6
1_555
covale
1.581
both
C
5CM
6
D
O3'
5CM
6
1_555
C
DG
7
D
P
DG
7
1_555
covale
1.579
both
F
DC
5
E
O3'
DC
5
1_555
F
5CM
6
E
P
5CM
6
1_555
covale
1.635
both
F
5CM
6
E
O3'
5CM
6
1_555
F
DG
7
E
P
DG
7
1_555
covale
1.681
both
E
DC
5
F
O3'
DC
5
1_555
E
5CM
6
F
P
5CM
6
1_555
covale
1.571
both
E
5CM
6
F
O3'
5CM
6
1_555
E
DG
7
F
P
DG
7
1_555
hydrog
WATSON-CRICK
D
DG
1
C
N1
DG
1
1_555
C
DC
12
D
N3
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
1
C
N2
DG
1
1_555
C
DC
12
D
O2
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
1
C
O6
DG
1
1_555
C
DC
12
D
N4
DC
12
1_555
hydrog
WATSON-CRICK
D
DC
2
C
N3
DC
2
1_555
C
DG
11
D
N1
DG
11
1_555
hydrog
WATSON-CRICK
D
DC
2
C
N4
DC
2
1_555
C
DG
11
D
O6
DG
11
1_555
hydrog
WATSON-CRICK
D
DC
2
C
O2
DC
2
1_555
C
DG
11
D
N2
DG
11
1_555
hydrog
WATSON-CRICK
D
DC
3
C
N3
DC
3
1_555
C
DG
10
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
D
DC
3
C
N4
DC
3
1_555
C
DG
10
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
D
DC
3
C
O2
DC
3
1_555
C
DG
10
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
D
DA
4
C
N1
DA
4
1_555
C
DT
9
D
N3
DT
9
1_555
hydrog
WATSON-CRICK
D
DA
4
C
N6
DA
4
1_555
C
DT
9
D
O4
DT
9
1_555
hydrog
WATSON-CRICK
D
DC
5
C
N3
DC
5
1_555
C
DG
8
D
N1
DG
8
1_555
hydrog
WATSON-CRICK
D
DC
5
C
N4
DC
5
1_555
C
DG
8
D
O6
DG
8
1_555
hydrog
WATSON-CRICK
D
DC
5
C
O2
DC
5
1_555
C
DG
8
D
N2
DG
8
1_555
hydrog
WATSON-CRICK
D
5CM
6
C
N3
5CM
6
1_555
C
DG
7
D
N1
DG
7
1_555
hydrog
WATSON-CRICK
D
5CM
6
C
N4
5CM
6
1_555
C
DG
7
D
O6
DG
7
1_555
hydrog
WATSON-CRICK
D
5CM
6
C
O2
5CM
6
1_555
C
DG
7
D
N2
DG
7
1_555
hydrog
WATSON-CRICK
D
DG
7
C
N1
DG
7
1_555
C
5CM
6
D
N3
5CM
6
1_555
hydrog
WATSON-CRICK
D
DG
7
C
N2
DG
7
1_555
C
5CM
6
D
O2
5CM
6
1_555
hydrog
WATSON-CRICK
D
DG
7
C
O6
DG
7
1_555
C
5CM
6
D
N4
5CM
6
1_555
hydrog
WATSON-CRICK
D
DG
8
C
N1
DG
8
1_555
C
DC
5
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
8
C
N2
DG
8
1_555
C
DC
5
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
8
C
O6
DG
8
1_555
C
DC
5
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
D
DT
9
C
N3
DT
9
1_555
C
DA
4
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
D
DT
9
C
O4
DT
9
1_555
C
DA
4
D
N6
DA
4
1_555
hydrog
WATSON-CRICK
D
DG
10
C
N1
DG
10
1_555
C
DC
3
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
D
DG
10
C
N2
DG
10
1_555
C
DC
3
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
D
DG
10
C
O6
DG
10
1_555
C
DC
3
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
D
DG
11
C
N1
DG
11
1_555
C
DC
2
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
11
C
N2
DG
11
1_555
C
DC
2
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
11
C
O6
DG
11
1_555
C
DC
2
D
N4
DC
2
1_555
hydrog
WATSON-CRICK
D
DC
12
C
N3
DC
12
1_555
C
DG
1
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
12
C
N4
DC
12
1_555
C
DG
1
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
12
C
O2
DC
12
1_555
C
DG
1
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
F
DG
1
E
N1
DG
1
1_555
E
DC
12
F
N3
DC
12
1_555
hydrog
WATSON-CRICK
F
DG
1
E
N2
DG
1
1_555
E
DC
12
F
O2
DC
12
1_555
hydrog
WATSON-CRICK
F
DG
1
E
O6
DG
1
1_555
E
DC
12
F
N4
DC
12
1_555
hydrog
WATSON-CRICK
F
DC
2
E
N3
DC
2
1_555
E
DG
11
F
N1
DG
11
1_555
hydrog
WATSON-CRICK
F
DC
2
E
N4
DC
2
1_555
E
DG
11
F
O6
DG
11
1_555
hydrog
WATSON-CRICK
F
DC
2
E
O2
DC
2
1_555
E
DG
11
F
N2
DG
11
1_555
hydrog
WATSON-CRICK
F
DC
3
E
N3
DC
3
1_555
E
DG
10
F
N1
DG
10
1_555
hydrog
WATSON-CRICK
F
DC
3
E
N4
DC
3
1_555
E
DG
10
F
O6
DG
10
1_555
hydrog
WATSON-CRICK
F
DC
3
E
O2
DC
3
1_555
E
DG
10
F
N2
DG
10
1_555
hydrog
WATSON-CRICK
F
DA
4
E
N1
DA
4
1_555
E
DT
9
F
N3
DT
9
1_555
hydrog
WATSON-CRICK
F
DA
4
E
N6
DA
4
1_555
E
DT
9
F
O4
DT
9
1_555
hydrog
WATSON-CRICK
F
DC
5
E
N3
DC
5
1_555
E
DG
8
F
N1
DG
8
1_555
hydrog
WATSON-CRICK
F
DC
5
E
N4
DC
5
1_555
E
DG
8
F
O6
DG
8
1_555
hydrog
WATSON-CRICK
F
DC
5
E
O2
DC
5
1_555
E
DG
8
F
N2
DG
8
1_555
hydrog
WATSON-CRICK
F
5CM
6
E
N3
5CM
6
1_555
E
DG
7
F
N1
DG
7
1_555
hydrog
WATSON-CRICK
F
5CM
6
E
N4
5CM
6
1_555
E
DG
7
F
O6
DG
7
1_555
hydrog
WATSON-CRICK
F
5CM
6
E
O2
5CM
6
1_555
E
DG
7
F
N2
DG
7
1_555
hydrog
WATSON-CRICK
F
DG
7
E
N1
DG
7
1_555
E
5CM
6
F
N3
5CM
6
1_555
hydrog
WATSON-CRICK
F
DG
7
E
N2
DG
7
1_555
E
5CM
6
F
O2
5CM
6
1_555
hydrog
WATSON-CRICK
F
DG
7
E
O6
DG
7
1_555
E
5CM
6
F
N4
5CM
6
1_555
hydrog
WATSON-CRICK
F
DG
8
E
N1
DG
8
1_555
E
DC
5
F
N3
DC
5
1_555
hydrog
WATSON-CRICK
F
DG
8
E
N2
DG
8
1_555
E
DC
5
F
O2
DC
5
1_555
hydrog
WATSON-CRICK
F
DG
8
E
O6
DG
8
1_555
E
DC
5
F
N4
DC
5
1_555
hydrog
WATSON-CRICK
F
DT
9
E
N3
DT
9
1_555
E
DA
4
F
N1
DA
4
1_555
hydrog
WATSON-CRICK
F
DT
9
E
O4
DT
9
1_555
E
DA
4
F
N6
DA
4
1_555
hydrog
WATSON-CRICK
F
DG
10
E
N1
DG
10
1_555
E
DC
3
F
N3
DC
3
1_555
hydrog
WATSON-CRICK
F
DG
10
E
N2
DG
10
1_555
E
DC
3
F
O2
DC
3
1_555
hydrog
WATSON-CRICK
F
DG
10
E
O6
DG
10
1_555
E
DC
3
F
N4
DC
3
1_555
hydrog
WATSON-CRICK
F
DG
11
E
N1
DG
11
1_555
E
DC
2
F
N3
DC
2
1_555
hydrog
WATSON-CRICK
F
DG
11
E
N2
DG
11
1_555
E
DC
2
F
O2
DC
2
1_555
hydrog
WATSON-CRICK
F
DG
11
E
O6
DG
11
1_555
E
DC
2
F
N4
DC
2
1_555
hydrog
WATSON-CRICK
F
DC
12
E
N3
DC
12
1_555
E
DG
1
F
N1
DG
1
1_555
hydrog
WATSON-CRICK
F
DC
12
E
N4
DC
12
1_555
E
DG
1
F
O6
DG
1
1_555
hydrog
WATSON-CRICK
F
DC
12
E
O2
DC
12
1_555
E
DG
1
F
N2
DG
1
1_555
DNA BINDING PROTEIN/DNA
mbd, dna methylation, Structural Genomics, Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex
A
B
D
C
D
F
D
E
C
F
C
E
F
E
A
GLY
92
A
GLY
14
A
ARG
162
A
ARG
84
0
B
GLY
92
B
GLY
14
B
ARG
162
B
ARG
84
0
D
DG
1
C
DG
1
D
DC
12
C
DC
12
0
C
DG
1
D
DG
1
C
DC
12
D
DC
12
0
D
DG
1
C
DG
1
D
DC
12
C
DC
12
0
F
DG
1
E
DG
1
F
DC
12
E
DC
12
0
D
DG
1
C
DG
1
D
DC
12
C
DC
12
0
E
DG
1
F
DG
1
E
DC
12
F
DC
12
0
C
DG
1
D
DG
1
C
DC
12
D
DC
12
0
F
DG
1
E
DG
1
F
DC
12
E
DC
12
0
C
DG
1
D
DG
1
C
DC
12
D
DC
12
0
E
DG
1
F
DG
1
E
DC
12
F
DC
12
0
F
DG
1
E
DG
1
F
DC
12
E
DC
12
0
E
DG
1
F
DG
1
E
DC
12
F
DC
12
0
MECP2_HUMAN
UNP
1
80
P51608
SPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTV
TGRGS
6C1Y
PDB
2
1
6C1Y
80
164
6C1Y
80
164
P51608
A
1
2
86
80
164
6C1Y
80
164
P51608
B
1
2
86
1
12
6C1Y
1
12
6C1Y
D
2
1
12
1
12
6C1Y
1
12
6C1Y
C
2
1
12
1
12
6C1Y
1
12
6C1Y
F
2
1
12
1
12
6C1Y
1
12
6C1Y
E
2
1
12
1
expression tag
GLY
79
6C1Y
A
P51608
UNP
1
2
expression tag
GLY
79
6C1Y
B
P51608
UNP
1
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
105
A
THR
27
A
GLN
110
A
GLN
32
A
TYR
120
A
TYR
42
A
ILE
125
A
ILE
47
A
ALA
131
A
ALA
53
A
PHE
132
A
PHE
54
B
THR
105
B
THR
27
B
GLN
110
B
GLN
32
B
TYR
120
B
TYR
42
B
ILE
125
B
ILE
47
B
ALA
131
B
ALA
53
B
PHE
132
B
PHE
54
binding site for Di-nucleotide DC C 5 and 5CM C 6
C
DC
5
Software
12
binding site for Di-nucleotide 5CM C 6 and DG C 7
C
5CM
6
Software
14
binding site for Di-nucleotide DC D 5 and 5CM D 6
D
DC
5
Software
8
binding site for Di-nucleotide 5CM D 6 and DG D 7
D
5CM
6
Software
11
binding site for Di-nucleotide DC E 5 and 5CM E 6
E
DC
5
Software
9
binding site for Di-nucleotide 5CM E 6 and DG E 7
E
5CM
6
Software
12
binding site for Di-nucleotide DC F 5 and 5CM F 6
F
DC
5
Software
10
binding site for Di-nucleotide 5CM F 6 and DG F 7
F
5CM
6
Software
13
A
LYS
109
A
LYS
31
12
1_555
A
ARG
111
A
ARG
33
12
1_555
A
LYS
112
A
LYS
34
12
1_555
A
SER
113
A
SER
35
12
1_555
A
SER
116
A
SER
38
12
1_555
A
ASP
121
A
ASP
43
12
1_555
A
TYR
123
A
TYR
45
12
1_555
A
ARG
133
A
ARG
55
12
1_555
C
DA
4
D
DA
4
12
1_555
C
DG
7
D
DG
7
12
1_555
D
DG
7
C
DG
7
12
1_555
D
DG
8
C
DG
8
12
1_555
A
ARG
111
A
ARG
33
14
1_555
A
LYS
112
A
LYS
34
14
1_555
A
SER
113
A
SER
35
14
1_555
A
GLY
114
A
GLY
36
14
1_555
A
ARG
115
A
ARG
37
14
1_555
A
SER
116
A
SER
38
14
1_555
A
ASP
121
A
ASP
43
14
1_555
A
ARG
133
A
ARG
55
14
1_555
C
DC
5
D
DC
5
14
1_555
C
DG
8
D
DG
8
14
1_555
D
DC
5
C
DC
5
14
1_555
D
5CM
6
C
5CM
6
14
1_555
D
DG
7
C
DG
7
14
1_555
D
DG
8
C
DG
8
14
1_555
A
ARG
133
A
ARG
55
8
1_555
A
SER
134
A
SER
56
8
1_555
B
GLN
110
B
GLN
32
8
1_546
B
LYS
112
B
LYS
34
8
1_546
C
DG
7
D
DG
7
8
1_555
C
DG
8
D
DG
8
8
1_555
D
DA
4
C
DA
4
8
1_555
D
DG
7
C
DG
7
8
1_555
A
ARG
133
A
ARG
55
11
1_555
A
SER
134
A
SER
56
11
1_555
B
TYR
95
B
TYR
17
11
1_546
B
GLN
110
B
GLN
32
11
1_546
B
LYS
112
B
LYS
34
11
1_546
B
TYR
120
B
TYR
42
11
1_546
C
DC
5
D
DC
5
11
1_555
C
5CM
6
D
5CM
6
11
1_555
C
DG
7
D
DG
7
11
1_555
D
DC
5
C
DC
5
11
1_555
D
DG
8
C
DG
8
11
1_555
B
ARG
111
B
ARG
33
9
1_555
B
LYS
112
B
LYS
34
9
1_555
B
SER
113
B
SER
35
9
1_555
B
SER
116
B
SER
38
9
1_555
B
ASP
121
B
ASP
43
9
1_555
E
DA
4
F
DA
4
9
1_555
E
DG
7
F
DG
7
9
1_555
F
DG
7
E
DG
7
9
1_555
F
DG
8
E
DG
8
9
1_555
B
ARG
111
B
ARG
33
12
1_555
B
LYS
112
B
LYS
34
12
1_555
B
SER
113
B
SER
35
12
1_555
B
GLY
114
B
GLY
36
12
1_555
B
ARG
115
B
ARG
37
12
1_555
B
SER
116
B
SER
38
12
1_555
B
ASP
121
B
ASP
43
12
1_555
E
DC
5
F
DC
5
12
1_555
E
DG
8
F
DG
8
12
1_555
F
5CM
6
E
5CM
6
12
1_555
F
DG
7
E
DG
7
12
1_555
F
DG
8
E
DG
8
12
1_555
A
GLN
110
A
GLN
32
10
1_565
A
LYS
112
A
LYS
34
10
1_565
B
ARG
133
B
ARG
55
10
1_555
B
SER
134
B
SER
56
10
1_555
B
VAL
136
B
VAL
58
10
1_555
B
PHE
157
B
PHE
79
10
1_555
E
DG
7
F
DG
7
10
1_555
E
DG
8
F
DG
8
10
1_555
F
DA
4
E
DA
4
10
1_555
F
DG
7
E
DG
7
10
1_555
A
TYR
95
A
TYR
17
13
1_565
A
GLN
110
A
GLN
32
13
1_565
A
LYS
112
A
LYS
34
13
1_565
A
TYR
120
A
TYR
42
13
1_565
B
ARG
133
B
ARG
55
13
1_555
B
SER
134
B
SER
56
13
1_555
B
VAL
136
B
VAL
58
13
1_555
E
DC
5
F
DC
5
13
1_555
E
5CM
6
F
5CM
6
13
1_555
E
DG
7
F
DG
7
13
1_555
E
DG
8
F
DG
8
13
1_555
F
DC
5
E
DC
5
13
1_555
F
DG
8
E
DG
8
13
1_555
1
P 1