0.038360
0.000000
0.000000
-0.000000
0.017359
0.000000
0.000000
-0.000000
0.015888
0.000000
0.000000
0.000000
0000-0003-0260-6287
Zhu, C.
Ke, H.M.
Swanstrom, R.
0000-0002-8225-4025
Dokholyan, N.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
26.069
57.606
62.940
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
S
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
R
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
UK
Nat Commun
2041-1723
10
948
948
10.1038/s41467-019-08876-w
30814513
Rationally designed carbohydrate-occluded epitopes elicit HIV-1 Env-specific antibodies.
2019
0000-0003-0260-6287
0000-0002-2094-2543
0000-0003-0207-767X
0000-0003-2669-7160
0000-0002-8225-4025
10.2210/pdb6cbu/pdb
pdb_00006cbu
100
1
CCD
2016-12-04
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97817
1.0
22-ID
APS
0.97817
SYNCHROTRON
APS BEAMLINE 22-ID
11306.705
Acylphosphatase-1
3.6.1.7
V87L, L89E, K90E
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
100
nat
water
Acylphosphatase,erythrocyte isozyme,organ-common type isozyme,Acylphosphate phosphohydrolase 1
no
no
GMAEGNTLISVDYEIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKA
NFNNEKLIEELDYSDFQIVA
GMAEGNTLISVDYEIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKA
NFNNEKLIEELDYSDFQIVA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
100
ACYP1, ACYPE
9606
Homo sapiens
562
Escherichia coli
Biological sequence
pET14b
1
2.16
43.17
VAPOR DIFFUSION, HANGING DROP
6.5
30% PEG 3350, 200 mM Bis-tris, pH 6.5, 200 mM LiSO4
293
pdbx_audit_support
citation
citation_author
pdbx_database_proc
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Author supporting evidence
Data collection
Data collection
Database references
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2019-02-06
1
1
2019-02-20
1
2
2019-03-13
1
3
2019-12-18
1
4
2023-10-04
_pdbx_audit_support.funding_organization
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
R01AI102732
N
RCSB
Y
RCSB
2018-02-05
REL
REL
SO4
SULFATE ION
HOH
water
2W4C
2W4C Human common-type acylphosphatase variant, A99
PDB
experimental model
SUL
1
2
SO4
SO4
101
A
HOH
63
3
HOH
HOH
201
A
HOH
64
3
HOH
HOH
202
A
HOH
7
3
HOH
HOH
203
A
HOH
20
3
HOH
HOH
204
A
HOH
2
3
HOH
HOH
205
A
HOH
36
3
HOH
HOH
206
A
HOH
80
3
HOH
HOH
207
A
HOH
39
3
HOH
HOH
208
A
HOH
68
3
HOH
HOH
209
A
HOH
34
3
HOH
HOH
210
A
HOH
33
3
HOH
HOH
211
A
HOH
26
3
HOH
HOH
212
A
HOH
18
3
HOH
HOH
213
A
HOH
29
3
HOH
HOH
214
A
HOH
31
3
HOH
HOH
215
A
HOH
57
3
HOH
HOH
216
A
HOH
87
3
HOH
HOH
217
A
HOH
62
3
HOH
HOH
218
A
HOH
71
3
HOH
HOH
219
A
HOH
51
3
HOH
HOH
220
A
HOH
81
3
HOH
HOH
221
A
HOH
50
3
HOH
HOH
222
A
HOH
32
3
HOH
HOH
223
A
HOH
5
3
HOH
HOH
224
A
HOH
46
3
HOH
HOH
225
A
HOH
9
3
HOH
HOH
226
A
HOH
17
3
HOH
HOH
227
A
HOH
75
3
HOH
HOH
228
A
HOH
73
3
HOH
HOH
229
A
HOH
24
3
HOH
HOH
230
A
HOH
49
3
HOH
HOH
231
A
HOH
23
3
HOH
HOH
232
A
HOH
8
3
HOH
HOH
233
A
HOH
4
3
HOH
HOH
234
A
HOH
90
3
HOH
HOH
235
A
HOH
12
3
HOH
HOH
236
A
HOH
89
3
HOH
HOH
237
A
HOH
6
3
HOH
HOH
238
A
HOH
42
3
HOH
HOH
239
A
HOH
15
3
HOH
HOH
240
A
HOH
85
3
HOH
HOH
241
A
HOH
41
3
HOH
HOH
242
A
HOH
53
3
HOH
HOH
243
A
HOH
82
3
HOH
HOH
244
A
HOH
35
3
HOH
HOH
245
A
HOH
84
3
HOH
HOH
246
A
HOH
65
3
HOH
HOH
247
A
HOH
86
3
HOH
HOH
248
A
HOH
70
3
HOH
HOH
249
A
HOH
1
3
HOH
HOH
250
A
HOH
10
3
HOH
HOH
251
A
HOH
74
3
HOH
HOH
252
A
HOH
97
3
HOH
HOH
253
A
HOH
48
3
HOH
HOH
254
A
HOH
25
3
HOH
HOH
255
A
HOH
45
3
HOH
HOH
256
A
HOH
96
3
HOH
HOH
257
A
HOH
77
3
HOH
HOH
258
A
HOH
27
3
HOH
HOH
259
A
HOH
69
3
HOH
HOH
260
A
HOH
22
3
HOH
HOH
261
A
HOH
52
3
HOH
HOH
262
A
HOH
93
3
HOH
HOH
263
A
HOH
37
3
HOH
HOH
264
A
HOH
44
3
HOH
HOH
265
A
HOH
21
3
HOH
HOH
266
A
HOH
72
3
HOH
HOH
267
A
HOH
61
3
HOH
HOH
268
A
HOH
100
3
HOH
HOH
269
A
HOH
11
3
HOH
HOH
270
A
HOH
30
3
HOH
HOH
271
A
HOH
91
3
HOH
HOH
272
A
HOH
88
3
HOH
HOH
273
A
HOH
13
3
HOH
HOH
274
A
HOH
56
3
HOH
HOH
275
A
HOH
19
3
HOH
HOH
276
A
HOH
67
3
HOH
HOH
277
A
HOH
55
3
HOH
HOH
278
A
HOH
94
3
HOH
HOH
279
A
HOH
47
3
HOH
HOH
280
A
HOH
16
3
HOH
HOH
281
A
HOH
60
3
HOH
HOH
282
A
HOH
79
3
HOH
HOH
283
A
HOH
99
3
HOH
HOH
284
A
HOH
54
3
HOH
HOH
285
A
HOH
3
3
HOH
HOH
286
A
HOH
43
3
HOH
HOH
287
A
HOH
58
3
HOH
HOH
288
A
HOH
95
3
HOH
HOH
289
A
HOH
40
3
HOH
HOH
290
A
HOH
76
3
HOH
HOH
291
A
HOH
14
3
HOH
HOH
292
A
HOH
59
3
HOH
HOH
293
A
HOH
28
3
HOH
HOH
294
A
HOH
92
3
HOH
HOH
295
A
HOH
66
3
HOH
HOH
296
A
HOH
78
3
HOH
HOH
297
A
HOH
98
3
HOH
HOH
298
A
HOH
38
3
HOH
HOH
299
A
HOH
83
3
HOH
HOH
300
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
GLY
4
n
5
GLY
4
A
ASN
5
n
6
ASN
5
A
THR
6
n
7
THR
6
A
LEU
7
n
8
LEU
7
A
ILE
8
n
9
ILE
8
A
SER
9
n
10
SER
9
A
VAL
10
n
11
VAL
10
A
ASP
11
n
12
ASP
11
A
TYR
12
n
13
TYR
12
A
GLU
13
n
14
GLU
13
A
ILE
14
n
15
ILE
14
A
PHE
15
n
16
PHE
15
A
GLY
16
n
17
GLY
16
A
LYS
17
n
18
LYS
17
A
VAL
18
n
19
VAL
18
A
GLN
19
n
20
GLN
19
A
GLY
20
n
21
GLY
20
A
VAL
21
n
22
VAL
21
A
PHE
22
n
23
PHE
22
A
PHE
23
n
24
PHE
23
A
ARG
24
n
25
ARG
24
A
LYS
25
n
26
LYS
25
A
HIS
26
n
27
HIS
26
A
THR
27
n
28
THR
27
A
GLN
28
n
29
GLN
28
A
ALA
29
n
30
ALA
29
A
GLU
30
n
31
GLU
30
A
GLY
31
n
32
GLY
31
A
LYS
32
n
33
LYS
32
A
LYS
33
n
34
LYS
33
A
LEU
34
n
35
LEU
34
A
GLY
35
n
36
GLY
35
A
LEU
36
n
37
LEU
36
A
VAL
37
n
38
VAL
37
A
GLY
38
n
39
GLY
38
A
TRP
39
n
40
TRP
39
A
VAL
40
n
41
VAL
40
A
GLN
41
n
42
GLN
41
A
ASN
42
n
43
ASN
42
A
THR
43
n
44
THR
43
A
ASP
44
n
45
ASP
44
A
ARG
45
n
46
ARG
45
A
GLY
46
n
47
GLY
46
A
THR
47
n
48
THR
47
A
VAL
48
n
49
VAL
48
A
GLN
49
n
50
GLN
49
A
GLY
50
n
51
GLY
50
A
GLN
51
n
52
GLN
51
A
LEU
52
n
53
LEU
52
A
GLN
53
n
54
GLN
53
A
GLY
54
n
55
GLY
54
A
PRO
55
n
56
PRO
55
A
ILE
56
n
57
ILE
56
A
SER
57
n
58
SER
57
A
LYS
58
n
59
LYS
58
A
VAL
59
n
60
VAL
59
A
ARG
60
n
61
ARG
60
A
HIS
61
n
62
HIS
61
A
MET
62
n
63
MET
62
A
GLN
63
n
64
GLN
63
A
GLU
64
n
65
GLU
64
A
TRP
65
n
66
TRP
65
A
LEU
66
n
67
LEU
66
A
GLU
67
n
68
GLU
67
A
THR
68
n
69
THR
68
A
ARG
69
n
70
ARG
69
A
GLY
70
n
71
GLY
70
A
SER
71
n
72
SER
71
A
PRO
72
n
73
PRO
72
A
LYS
73
n
74
LYS
73
A
SER
74
n
75
SER
74
A
HIS
75
n
76
HIS
75
A
ILE
76
n
77
ILE
76
A
ASP
77
n
78
ASP
77
A
LYS
78
n
79
LYS
78
A
ALA
79
n
80
ALA
79
A
ASN
80
n
81
ASN
80
A
PHE
81
n
82
PHE
81
A
ASN
82
n
83
ASN
82
A
ASN
83
n
84
ASN
83
A
GLU
84
n
85
GLU
84
A
LYS
85
n
86
LYS
85
A
LEU
86
n
87
LEU
86
A
ILE
87
n
88
ILE
87
A
GLU
88
n
89
GLU
88
A
GLU
89
n
90
GLU
89
A
LEU
90
n
91
LEU
90
A
ASP
91
n
92
ASP
91
A
TYR
92
n
93
TYR
92
A
SER
93
n
94
SER
93
A
ASP
94
n
95
ASP
94
A
PHE
95
n
96
PHE
95
A
GLN
96
n
97
GLN
96
A
ILE
97
n
98
ILE
97
A
VAL
98
n
99
VAL
98
A
ALA
99
n
100
ALA
99
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
80
A
O
ASN
81
A
N
GLU
13
A
N
GLU
14
A
N
ILE
14
A
N
ILE
15
A
O
VAL
48
A
O
VAL
49
A
O
GLN
49
A
O
GLN
50
A
N
GLN
41
A
N
GLN
42
A
N
VAL
40
A
N
VAL
41
A
O
VAL
98
A
O
VAL
99
1
A
GLY
0
A
GLY
1
1
Y
1
A
MET
1
A
MET
2
1
Y
1
A
ALA
2
A
ALA
3
1
Y
1
A
GLU
3
A
GLU
4
1
Y
1
A
ASN
5
-118.07
61.37
1
A
ARG
69
-132.54
-65.12
37.400
8.5080
4.040
-0.0000
-0.0000
0.0000
0.0000
-0.0000
0.0000
0.9650
0.9590
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.1532
0.1430
0.1435
1.2000
42.4900
1444
28610
4.8000
98.3100
0.6670
0.0150
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0360
0.0330
0.8000
0.8000
1.2000
2W4C Human common-type acylphosphatase variant, A99
MAXIMUM LIKELIHOOD
MASK
1.2000
42.4900
100
876
7.88
17.71
5
0
771
96
0.006
0.019
799
0.001
0.020
758
1.198
1.930
1076
1.693
3.000
1742
6.201
5.000
95
31.752
25.116
43
10.509
15.000
145
11.894
15.000
4
0.082
0.200
113
0.005
0.020
918
0.001
0.020
198
1.840
3.000
1557
16.344
5.000
25
3.712
5.000
1617
0.1320
0.0000
0.1040
1.2300
105
1993
2098
20
94.8000
1.200
50.000
6CBU
30098
0.056
0.016
0.059
2.280
1
18.900
424714
14.100
98.400
0.130
1.200
1.220
1454
0.996
0.036
0.135
1.583
1
13.900
96.700
0.121
1.220
1.240
1475
0.996
0.033
0.126
1.584
1
14.200
96.800
0.110
1.240
1.270
1417
0.997
0.030
0.114
1.635
1
14.400
96.800
0.103
1.270
1.290
1467
0.997
0.028
0.107
1.645
1
14.400
97.100
0.097
1.290
1.320
1467
0.997
0.026
0.100
1.626
1
14.300
97.300
0.094
1.320
1.350
1458
0.997
0.025
0.097
1.642
1
14.500
97.600
0.091
1.350
1.390
1482
0.996
0.025
0.095
1.701
1
14.400
97.800
0.083
1.390
1.420
1475
0.998
0.022
0.086
1.751
1
14.500
97.900
0.079
1.420
1.460
1494
0.997
0.021
0.082
1.812
1
14.500
98.200
0.074
1.460
1.510
1475
0.998
0.020
0.076
1.906
1
14.500
98.100
0.071
1.510
1.570
1491
0.998
0.019
0.074
2.063
1
14.500
98.400
0.068
1.570
1.630
1513
0.998
0.018
0.071
2.209
1
14.400
99.100
0.066
1.630
1.700
1503
0.999
0.018
0.069
2.378
1
14.400
98.600
0.064
1.700
1.790
1500
0.999
0.017
0.067
2.590
1
14.300
99.300
0.064
1.790
1.900
1529
0.999
0.017
0.066
3.015
1
14.100
99.300
0.063
1.900
2.050
1523
0.999
0.018
0.065
3.601
1
13.700
99.500
0.061
2.050
2.260
1539
0.999
0.017
0.064
3.765
1
13.600
99.500
0.053
2.260
2.590
1561
0.999
0.014
0.055
3.120
1
13.800
99.800
0.044
2.590
3.260
1586
0.998
0.012
0.046
2.792
1
13.600
99.900
0.047
3.260
50.000
1689
0.998
0.013
0.049
3.165
1
12.600
99.800
refinement
REFMAC
5.8.0073
data scaling
HKL-2000
data extraction
PDB_EXTRACT
3.24
data reduction
HKL-2000
phasing
PHASER
N
Crystal structure of C4S3: A computationally designed immunogen to target Carbohydrate-Occluded Epitopes on the HIV envelope
1
N
N
2
N
N
3
N
N
A
PHE
22
A
PHE
23
HELX_P
A
LEU
34
A
LEU
35
1
AA1
13
A
ILE
56
A
ILE
57
HELX_P
A
ARG
69
A
ARG
70
1
AA2
14
TRANSPORT PROTEIN
Immunogen, HIV-1, gp120, Protein Design, TRANSPORT PROTEIN
ACYP1_HUMAN
UNP
1
1
P07311
MAEGNTLISVDYEIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKAN
FNNEKVILKLDYSDFQIV
1
98
6CBU
1
98
P07311
A
1
2
99
1
expression tag
GLY
0
6CBU
A
P07311
UNP
1
1
VAL
engineered mutation
LEU
86
6CBU
A
P07311
UNP
86
87
1
LEU
engineered mutation
GLU
88
6CBU
A
P07311
UNP
88
89
1
LYS
engineered mutation
GLU
89
6CBU
A
P07311
UNP
89
90
1
expression tag
ALA
99
6CBU
A
P07311
UNP
100
5
anti-parallel
anti-parallel
anti-parallel
parallel
A
HIS
75
A
HIS
76
A
ILE
87
A
ILE
88
A
LEU
7
A
LEU
8
A
LYS
17
A
LYS
18
A
VAL
48
A
VAL
49
A
PRO
55
A
PRO
56
A
VAL
37
A
VAL
38
A
ASN
42
A
ASN
43
A
PHE
95
A
PHE
96
A
VAL
98
A
VAL
99
binding site for residue SO4 A 101
A
SO4
101
Software
12
A
VAL
18
A
VAL
19
12
1_555
A
GLN
19
A
GLN
20
12
1_555
A
GLY
20
A
GLY
21
12
1_555
A
VAL
21
A
VAL
22
12
1_555
A
PHE
22
A
PHE
23
12
1_555
A
PHE
23
A
PHE
24
12
1_555
A
ARG
24
A
ARG
25
12
1_555
A
ASN
42
A
ASN
43
12
1_555
A
ARG
60
A
ARG
61
12
2_554
A
HOH
203
C
HOH
12
1_555
A
HOH
208
C
HOH
12
1_555
A
HOH
242
C
HOH
12
1_555
19
P 21 21 21