data_6CF4 # _entry.id 6CF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.344 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6CF4 WWPDB D_1000232635 EMDB EMD-7466 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5WHN unspecified PDB . 5WKB unspecified PDB . 5WHP unspecified EMDB ;Segment NFGTFS, with familial mutation A315T and phosphorylated threonine, from the low complexity domain of TDP-43, residues 312-317 ; EMD-7466 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CF4 _pdbx_database_status.recvd_initial_deposition_date 2018-02-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guenther, E.L.' 1 ? 'Cao, Q.' 2 ? 'Boyer, D.R.' 3 ? 'Sawaya, M.R.' 4 ? 'Eisenberg, D.S.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 463 _citation.page_last 471 _citation.title 'Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0064-2 _citation.pdbx_database_id_PubMed 29786080 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guenther, E.L.' 1 ? primary 'Cao, Q.' 2 ? primary 'Trinh, H.' 3 ? primary 'Lu, J.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Cascio, D.' 6 ? primary 'Boyer, D.R.' 7 ? primary 'Rodriguez, J.A.' 8 ? primary 'Hughes, M.P.' 9 ? primary 'Eisenberg, D.S.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6CF4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.650 _cell.length_a_esd ? _cell.length_b 4.720 _cell.length_b_esd ? _cell.length_c 30.060 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn NFGTFS 751.679 1 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'NFG(TPO)FS' _entity_poly.pdbx_seq_one_letter_code_can NFGTFS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 PHE n 1 3 GLY n 1 4 TPO n 1 5 PHE n 1 6 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Synthetic peptide NFGpTFS corresponding tosegment 312-317 of TDP-43, with phosphorylated threonine' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CF4 _struct_ref.pdbx_db_accession 6CF4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6CF4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6CF4 _struct_ref_seq.db_align_beg 312 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 317 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 312 _struct_ref_seq.pdbx_auth_seq_align_end 317 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CF4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method Batch _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1X PBS 7.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'TVIPS F416 CMOS CAMERA' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-01-09 # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'TRANSMISSION ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TECNAI F20 TEM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 40.550 _reflns.entry_id 6CF4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.750 _reflns.d_resolution_low 7.645 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4177 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 86.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.804 _reflns.pdbx_Rmerge_I_obs 0.172 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.958 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.203 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 15891 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.989 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 0.750 0.770 ? 1.280 ? 1259 360 ? 314 87.200 ? ? ? ? 0.661 ? ? ? ? ? ? ? ? 4.010 ? ? ? ? 0.757 ? ? 1 1 0.599 ? 0.770 0.790 ? 1.430 ? 1271 352 ? 310 88.100 ? ? ? ? 0.668 ? ? ? ? ? ? ? ? 4.100 ? ? ? ? 0.770 ? ? 2 1 0.533 ? 0.790 0.810 ? 1.350 ? 974 306 ? 268 87.600 ? ? ? ? 0.656 ? ? ? ? ? ? ? ? 3.634 ? ? ? ? 0.772 ? ? 3 1 0.474 ? 0.810 0.840 ? 1.530 ? 1019 301 ? 265 88.000 ? ? ? ? 0.633 ? ? ? ? ? ? ? ? 3.845 ? ? ? ? 0.730 ? ? 4 1 0.625 ? 0.840 0.870 ? 1.830 ? 1032 303 ? 263 86.800 ? ? ? ? 0.559 ? ? ? ? ? ? ? ? 3.924 ? ? ? ? 0.645 ? ? 5 1 0.646 ? 0.870 0.900 ? 2.580 ? 1082 305 ? 268 87.900 ? ? ? ? 0.420 ? ? ? ? ? ? ? ? 4.037 ? ? ? ? 0.484 ? ? 6 1 0.788 ? 0.900 0.930 ? 3.480 ? 1146 306 ? 270 88.200 ? ? ? ? 0.302 ? ? ? ? ? ? ? ? 4.244 ? ? ? ? 0.341 ? ? 7 1 0.903 ? 0.930 0.970 ? 3.360 ? 901 277 ? 244 88.100 ? ? ? ? 0.304 ? ? ? ? ? ? ? ? 3.693 ? ? ? ? 0.353 ? ? 8 1 0.864 ? 0.970 1.010 ? 3.370 ? 808 258 ? 224 86.800 ? ? ? ? 0.341 ? ? ? ? ? ? ? ? 3.607 ? ? ? ? 0.405 ? ? 9 1 0.832 ? 1.010 1.060 ? 4.480 ? 835 251 ? 218 86.900 ? ? ? ? 0.273 ? ? ? ? ? ? ? ? 3.830 ? ? ? ? 0.320 ? ? 10 1 0.872 ? 1.060 1.120 ? 5.190 ? 912 259 ? 227 87.600 ? ? ? ? 0.214 ? ? ? ? ? ? ? ? 4.018 ? ? ? ? 0.247 ? ? 11 1 0.969 ? 1.120 1.190 ? 5.710 ? 915 253 ? 222 87.700 ? ? ? ? 0.213 ? ? ? ? ? ? ? ? 4.122 ? ? ? ? 0.248 ? ? 12 1 0.953 ? 1.190 1.270 ? 5.610 ? 593 208 ? 175 84.100 ? ? ? ? 0.177 ? ? ? ? ? ? ? ? 3.389 ? ? ? ? 0.211 ? ? 13 1 0.958 ? 1.270 1.370 ? 5.480 ? 597 204 ? 178 87.300 ? ? ? ? 0.200 ? ? ? ? ? ? ? ? 3.354 ? ? ? ? 0.239 ? ? 14 1 0.942 ? 1.370 1.500 ? 6.700 ? 688 207 ? 177 85.500 ? ? ? ? 0.184 ? ? ? ? ? ? ? ? 3.887 ? ? ? ? 0.216 ? ? 15 1 0.929 ? 1.500 1.680 ? 7.210 ? 573 179 ? 156 87.200 ? ? ? ? 0.151 ? ? ? ? ? ? ? ? 3.673 ? ? ? ? 0.181 ? ? 16 1 0.929 ? 1.680 1.940 ? 7.090 ? 382 152 ? 127 83.600 ? ? ? ? 0.143 ? ? ? ? ? ? ? ? 3.008 ? ? ? ? 0.174 ? ? 17 1 0.929 ? 1.940 2.370 ? 8.650 ? 505 161 ? 134 83.200 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 3.769 ? ? ? ? 0.150 ? ? 18 1 0.976 ? 2.370 3.360 ? 8.710 ? 239 102 ? 82 80.400 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 2.915 ? ? ? ? 0.102 ? ? 19 1 0.983 ? 3.360 7.645 ? 9.550 ? 160 78 ? 55 70.500 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 2.909 ? ? ? ? 0.082 ? ? 20 1 0.991 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 170.860 _refine.B_iso_mean 12.1080 _refine.B_iso_min 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6CF4 _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.7500 _refine.ls_d_res_low 7.6450 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4178 _refine.ls_number_reflns_R_free 428 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 86.7700 _refine.ls_percent_reflns_R_free 10.2400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2346 _refine.ls_R_factor_R_free 0.2512 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2324 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.2100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 0.7500 _refine_hist.d_res_low 7.6450 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 53 _refine_hist.pdbx_number_residues_total 6 _refine_hist.pdbx_B_iso_mean_solvent 3.07 _refine_hist.pdbx_number_atoms_protein 52 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.021 ? 53 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.042 ? 72 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.110 ? 6 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.008 ? 9 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 32.500 ? 16 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 0.7503 0.8588 1348 . 139 1209 88.0000 . . . 0.4023 0.0000 0.3819 . . . . . . 3 . . . 'ELECTRON CRYSTALLOGRAPHY' 0.8588 1.0815 1378 . 137 1241 88.0000 . . . 0.2774 0.0000 0.2828 . . . . . . 3 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.0815 7.6450 1452 . 152 1300 85.0000 . . . 0.2098 0.0000 0.1861 . . . . . . 3 . . . # _struct.entry_id 6CF4 _struct.title ;Segment NFGTFS, with familial mutation A315T and phosphorylated threonine, from the low complexity domain of TDP-43, residues 312-317 ; _struct.pdbx_descriptor AALQSS _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CF4 _struct_keywords.text 'Amyloid, LARKS, Reversible aggregation, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 3 C ? ? ? 1_555 A TPO 4 N ? ? A GLY 314 A TPO 315 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale2 covale both ? A TPO 4 C ? ? ? 1_555 A PHE 5 N ? ? A TPO 315 A PHE 316 1_555 ? ? ? ? ? ? ? 1.320 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6CF4 _atom_sites.fract_transf_matrix[1][1] 0.042283 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.211864 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033267 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . ASN A 1 1 ? 12.845 2.557 3.438 1.00 4.43 ? 312 ASN A N 1 ATOM 2 C CA . ASN A 1 1 ? 11.573 1.795 3.262 1.00 2.56 ? 312 ASN A CA 1 ATOM 3 C C . ASN A 1 1 ? 10.471 2.711 2.786 1.00 2.97 ? 312 ASN A C 1 ATOM 4 O O . ASN A 1 1 ? 10.742 3.827 2.365 1.00 2.25 ? 312 ASN A O 1 ATOM 5 C CB . ASN A 1 1 ? 11.171 1.016 4.536 1.00 3.07 ? 312 ASN A CB 1 ATOM 6 C CG . ASN A 1 1 ? 10.780 1.898 5.708 1.00 2.97 ? 312 ASN A CG 1 ATOM 7 O OD1 . ASN A 1 1 ? 10.751 3.120 5.632 1.00 2.97 ? 312 ASN A OD1 1 ATOM 8 N ND2 . ASN A 1 1 ? 10.454 1.252 6.803 1.00 3.48 ? 312 ASN A ND2 1 ATOM 9 H H1 . ASN A 1 1 ? 13.468 2.222 2.898 0.51 52.60 ? 312 ASN A H1 1 ATOM 10 H H2 . ASN A 1 1 ? 12.709 3.413 3.238 1.00 13.53 ? 312 ASN A H2 1 ATOM 11 H H3 . ASN A 1 1 ? 13.117 2.488 4.283 0.12 170.86 ? 312 ASN A H3 1 ATOM 12 H HA . ASN A 1 1 ? 11.719 1.147 2.559 0.83 1.52 ? 312 ASN A HA 1 ATOM 13 H HB2 . ASN A 1 1 ? 10.412 0.444 4.331 1.00 3.68 ? 312 ASN A HB2 1 ATOM 14 H HB3 . ASN A 1 1 ? 11.922 0.471 4.818 0.78 3.22 ? 312 ASN A HB3 1 ATOM 15 H HD22 . ASN A 1 1 ? 10.487 0.392 6.812 1.00 10.51 ? 312 ASN A HD22 1 ATOM 16 N N . PHE A 1 2 ? 9.235 2.218 2.782 1.00 3.44 ? 313 PHE A N 1 ATOM 17 C CA . PHE A 1 2 ? 8.123 3.117 2.535 1.00 3.12 ? 313 PHE A CA 1 ATOM 18 C C . PHE A 1 2 ? 7.734 3.805 3.829 1.00 2.62 ? 313 PHE A C 1 ATOM 19 O O . PHE A 1 2 ? 7.795 5.029 3.928 1.00 3.19 ? 313 PHE A O 1 ATOM 20 C CB . PHE A 1 2 ? 6.938 2.400 1.895 1.00 3.47 ? 313 PHE A CB 1 ATOM 21 C CG . PHE A 1 2 ? 5.906 3.340 1.374 1.00 4.70 ? 313 PHE A CG 1 ATOM 22 C CD1 . PHE A 1 2 ? 6.003 3.836 0.096 1.00 5.86 ? 313 PHE A CD1 1 ATOM 23 C CD2 . PHE A 1 2 ? 4.862 3.768 2.174 1.00 7.22 ? 313 PHE A CD2 1 ATOM 24 C CE1 . PHE A 1 2 ? 5.064 4.721 -0.392 1.00 6.40 ? 313 PHE A CE1 1 ATOM 25 C CE2 . PHE A 1 2 ? 3.922 4.658 1.692 1.00 8.18 ? 313 PHE A CE2 1 ATOM 26 C CZ . PHE A 1 2 ? 4.026 5.133 0.402 1.00 7.02 ? 313 PHE A CZ 1 ATOM 27 H H . PHE A 1 2 ? 9.021 1.395 2.916 1.00 4.95 ? 313 PHE A H 1 ATOM 28 H HA . PHE A 1 2 ? 8.407 3.807 1.918 0.76 2.02 ? 313 PHE A HA 1 ATOM 29 H HB3 . PHE A 1 2 ? 6.518 1.829 2.556 0.89 1.86 ? 313 PHE A HB3 1 ATOM 30 H HD1 . PHE A 1 2 ? 6.704 3.563 -0.451 0.56 7.21 ? 313 PHE A HD1 1 ATOM 31 H HD2 . PHE A 1 2 ? 4.789 3.449 3.044 1.00 105.75 ? 313 PHE A HD2 1 ATOM 32 H HE1 . PHE A 1 2 ? 5.137 5.042 -1.262 1.00 42.48 ? 313 PHE A HE1 1 ATOM 33 H HE2 . PHE A 1 2 ? 3.218 4.931 2.236 0.00 85.96 ? 313 PHE A HE2 1 ATOM 34 H HZ . PHE A 1 2 ? 3.394 5.731 0.070 0.73 12.47 ? 313 PHE A HZ 1 ATOM 35 N N . GLY A 1 3 ? 7.408 3.044 4.851 1.00 2.45 ? 314 GLY A N 1 ATOM 36 C CA . GLY A 1 3 ? 7.275 3.664 6.133 1.00 3.11 ? 314 GLY A CA 1 ATOM 37 C C . GLY A 1 3 ? 6.419 2.877 7.061 1.00 2.26 ? 314 GLY A C 1 ATOM 38 O O . GLY A 1 3 ? 6.297 1.666 6.961 1.00 2.67 ? 314 GLY A O 1 ATOM 39 H HA2 . GLY A 1 3 ? 8.154 3.764 6.529 0.89 5.70 ? 314 GLY A HA2 1 ATOM 40 H HA3 . GLY A 1 3 ? 6.883 4.536 6.020 1.00 120.76 ? 314 GLY A HA3 1 HETATM 41 N N . TPO A 1 4 ? 5.803 3.594 7.975 1.00 2.39 ? 315 TPO A N 1 HETATM 42 C CA . TPO A 1 4 ? 5.181 2.973 9.103 1.00 2.13 ? 315 TPO A CA 1 HETATM 43 C CB . TPO A 1 4 ? 6.131 3.012 10.292 1.00 2.35 ? 315 TPO A CB 1 HETATM 44 C CG2 . TPO A 1 4 ? 5.481 2.535 11.587 1.00 3.60 ? 315 TPO A CG2 1 HETATM 45 O OG1 . TPO A 1 4 ? 7.150 2.084 9.950 1.00 2.68 ? 315 TPO A OG1 1 HETATM 46 P P . TPO A 1 4 ? 8.647 2.648 10.020 1.00 2.79 ? 315 TPO A P 1 HETATM 47 O O1P . TPO A 1 4 ? 9.596 1.446 9.603 1.00 3.38 ? 315 TPO A O1P 1 HETATM 48 O O2P . TPO A 1 4 ? 8.821 3.730 9.007 1.00 3.46 ? 315 TPO A O2P 1 HETATM 49 O O3P . TPO A 1 4 ? 9.014 3.185 11.454 1.00 2.79 ? 315 TPO A O3P 1 HETATM 50 C C . TPO A 1 4 ? 3.883 3.676 9.408 1.00 2.52 ? 315 TPO A C 1 HETATM 51 O O . TPO A 1 4 ? 3.812 4.888 9.465 1.00 2.17 ? 315 TPO A O 1 HETATM 52 H H . TPO A 1 4 ? 5.683 4.684 7.900 1.00 17.81 ? 315 TPO A H 1 HETATM 53 H HA . TPO A 1 4 ? 4.981 2.041 8.884 0.90 0.08 ? 315 TPO A HA 1 HETATM 54 H HG21 . TPO A 1 4 ? 5.733 3.232 12.385 1.00 25.49 ? 315 TPO A HG21 1 HETATM 55 H HG22 . TPO A 1 4 ? 5.879 1.552 11.836 0.87 16.05 ? 315 TPO A HG22 1 HETATM 56 H HG23 . TPO A 1 4 ? 4.399 2.465 11.507 0.82 7.61 ? 315 TPO A HG23 1 HETATM 57 H HOP2 . TPO A 1 4 ? 9.043 4.774 9.355 1.00 1.84 ? 315 TPO A HOP2 1 ATOM 58 N N . PHE A 1 5 ? 2.846 2.878 9.583 1.00 3.18 ? 316 PHE A N 1 ATOM 59 C CA . PHE A 1 5 ? 1.565 3.379 10.020 1.00 3.55 ? 316 PHE A CA 1 ATOM 60 C C . PHE A 1 5 ? 1.308 2.781 11.382 1.00 3.16 ? 316 PHE A C 1 ATOM 61 O O . PHE A 1 5 ? 1.321 1.571 11.547 1.00 3.31 ? 316 PHE A O 1 ATOM 62 C CB . PHE A 1 5 ? 0.502 2.911 9.038 1.00 5.05 ? 316 PHE A CB 1 ATOM 63 C CG . PHE A 1 5 ? -0.878 3.415 9.328 1.00 7.31 ? 316 PHE A CG 1 ATOM 64 C CD1 . PHE A 1 5 ? -1.110 4.440 10.222 1.00 8.89 ? 316 PHE A CD1 1 ATOM 65 C CD2 . PHE A 1 5 ? -1.959 2.847 8.679 1.00 9.55 ? 316 PHE A CD2 1 ATOM 66 C CE1 . PHE A 1 5 ? -2.397 4.877 10.464 1.00 10.84 ? 316 PHE A CE1 1 ATOM 67 C CE2 . PHE A 1 5 ? -3.241 3.281 8.912 1.00 10.86 ? 316 PHE A CE2 1 ATOM 68 C CZ . PHE A 1 5 ? -3.464 4.291 9.811 1.00 9.09 ? 316 PHE A CZ 1 ATOM 69 H H . PHE A 1 5 ? 2.864 2.027 9.454 1.00 13.00 ? 316 PHE A H 1 ATOM 70 H HA . PHE A 1 5 ? 1.569 4.348 10.079 1.00 4.01 ? 316 PHE A HA 1 ATOM 71 H HB3 . PHE A 1 5 ? 0.472 1.939 9.043 1.00 3.45 ? 316 PHE A HB3 1 ATOM 72 H HD1 . PHE A 1 5 ? -0.399 4.836 10.672 1.00 153.69 ? 316 PHE A HD1 1 ATOM 73 H HD2 . PHE A 1 5 ? -1.815 2.158 8.073 0.92 58.96 ? 316 PHE A HD2 1 ATOM 74 H HE1 . PHE A 1 5 ? -2.546 5.565 11.071 0.00 85.49 ? 316 PHE A HE1 1 ATOM 75 H HE2 . PHE A 1 5 ? -3.956 2.884 8.469 1.00 43.71 ? 316 PHE A HE2 1 ATOM 76 H HZ . PHE A 1 5 ? -4.329 4.590 9.971 0.00 7.08 ? 316 PHE A HZ 1 ATOM 77 N N . SER A 1 6 ? 1.076 3.619 12.366 1.00 4.36 ? 317 SER A N 1 ATOM 78 C CA . SER A 1 6 ? 0.815 3.144 13.704 1.00 5.97 ? 317 SER A CA 1 ATOM 79 C C . SER A 1 6 ? -0.344 3.944 14.255 1.00 6.06 ? 317 SER A C 1 ATOM 80 O O . SER A 1 6 ? -0.818 4.888 13.654 1.00 5.98 ? 317 SER A O 1 ATOM 81 C CB . SER A 1 6 ? 2.093 3.289 14.574 1.00 8.74 ? 317 SER A CB 1 ATOM 82 O OG . SER A 1 6 ? 2.292 4.575 14.897 1.00 9.51 ? 317 SER A OG 1 ATOM 83 O OXT . SER A 1 6 ? -0.738 3.695 15.404 1.00 5.61 ? 317 SER A OXT 1 ATOM 84 H H . SER A 1 6 ? 1.064 4.475 12.285 0.00 80.72 ? 317 SER A H 1 ATOM 85 H HA . SER A 1 6 ? 0.559 2.198 13.676 0.91 7.32 ? 317 SER A HA 1 ATOM 86 H HB2 . SER A 1 6 ? 1.986 2.770 15.386 0.00 61.56 ? 317 SER A HB2 1 ATOM 87 H HB3 . SER A 1 6 ? 2.857 2.967 14.071 1.00 13.83 ? 317 SER A HB3 1 ATOM 88 H HG . SER A 1 6 ? 1.656 4.856 15.333 0.29 12.54 ? 317 SER A HG 1 HETATM 89 O O . HOH B 2 . ? 9.493 1.845 13.535 1.00 3.07 ? 401 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . ASN A 1 ? 0.0676 0.0422 0.0583 -0.0063 0.0282 -0.0143 312 ASN A N 2 C CA . ASN A 1 ? 0.0515 0.0180 0.0278 0.0043 0.0114 0.0006 312 ASN A CA 3 C C . ASN A 1 ? 0.0558 0.0399 0.0171 0.0015 0.0047 -0.0013 312 ASN A C 4 O O . ASN A 1 ? 0.0519 0.0173 0.0162 -0.0006 0.0030 -0.0011 312 ASN A O 5 C CB . ASN A 1 ? 0.0462 0.0436 0.0267 -0.0031 0.0056 -0.0012 312 ASN A CB 6 C CG . ASN A 1 ? 0.0601 0.0274 0.0253 -0.0077 0.0032 0.0072 312 ASN A CG 7 O OD1 . ASN A 1 ? 0.0617 0.0208 0.0302 0.0007 -0.0004 -0.0062 312 ASN A OD1 8 N ND2 . ASN A 1 ? 0.0589 0.0364 0.0369 -0.0077 0.0055 0.0027 312 ASN A ND2 16 N N . PHE A 2 ? 0.0588 0.0473 0.0246 0.0010 0.0023 -0.0037 313 PHE A N 17 C CA . PHE A 2 ? 0.0617 0.0284 0.0286 -0.0041 0.0055 -0.0057 313 PHE A CA 18 C C . PHE A 2 ? 0.0587 0.0189 0.0221 0.0056 0.0023 -0.0018 313 PHE A C 19 O O . PHE A 2 ? 0.0734 0.0248 0.0232 -0.0109 0.0010 -0.0018 313 PHE A O 20 C CB . PHE A 2 ? 0.0604 0.0200 0.0513 0.0010 0.0033 0.0088 313 PHE A CB 21 C CG . PHE A 2 ? 0.0788 0.0377 0.0622 0.0046 -0.0019 0.0245 313 PHE A CG 22 C CD1 . PHE A 2 ? 0.0864 0.0631 0.0733 0.0124 -0.0122 0.0346 313 PHE A CD1 23 C CD2 . PHE A 2 ? 0.0995 0.0761 0.0988 0.0107 -0.0110 0.0453 313 PHE A CD2 24 C CE1 . PHE A 2 ? 0.0949 0.0600 0.0883 -0.0029 -0.0097 0.0393 313 PHE A CE1 25 C CE2 . PHE A 2 ? 0.1066 0.0931 0.1112 0.0198 -0.0094 0.0339 313 PHE A CE2 26 C CZ . PHE A 2 ? 0.1000 0.0629 0.1037 0.0041 -0.0145 0.0411 313 PHE A CZ 35 N N . GLY A 3 ? 0.0493 0.0162 0.0277 0.0033 0.0057 -0.0027 314 GLY A N 36 C CA . GLY A 3 ? 0.0601 0.0214 0.0365 -0.0062 0.0064 0.0059 314 GLY A CA 37 C C . GLY A 3 ? 0.0532 0.0162 0.0166 -0.0036 0.0042 -0.0003 314 GLY A C 38 O O . GLY A 3 ? 0.0542 0.0268 0.0206 0.0174 0.0072 0.0034 314 GLY A O 41 N N . TPO A 4 ? 0.0490 0.0265 0.0152 -0.0031 0.0022 -0.0021 315 TPO A N 42 C CA . TPO A 4 ? 0.0461 0.0202 0.0146 0.0090 -0.0007 0.0003 315 TPO A CA 43 C CB . TPO A 4 ? 0.0421 0.0266 0.0206 0.0054 -0.0055 0.0076 315 TPO A CB 44 C CG2 . TPO A 4 ? 0.0581 0.0321 0.0464 0.0177 -0.0069 0.0080 315 TPO A CG2 45 O OG1 . TPO A 4 ? 0.0539 0.0302 0.0178 0.0032 -0.0053 -0.0041 315 TPO A OG1 46 P P . TPO A 4 ? 0.0578 0.0304 0.0178 0.0007 0.0014 0.0036 315 TPO A P 47 O O1P . TPO A 4 ? 0.0644 0.0450 0.0192 -0.0050 -0.0031 0.0025 315 TPO A O1P 48 O O2P . TPO A 4 ? 0.0752 0.0341 0.0222 -0.0068 0.0034 0.0022 315 TPO A O2P 49 O O3P . TPO A 4 ? 0.0588 0.0287 0.0185 0.0060 0.0063 0.0009 315 TPO A O3P 50 C C . TPO A 4 ? 0.0501 0.0264 0.0194 0.0006 -0.0037 0.0068 315 TPO A C 51 O O . TPO A 4 ? 0.0440 0.0141 0.0243 0.0035 -0.0009 0.0017 315 TPO A O 58 N N . PHE A 5 ? 0.0522 0.0353 0.0333 -0.0195 -0.0122 0.0123 316 PHE A N 59 C CA . PHE A 5 ? 0.0672 0.0254 0.0424 -0.0086 -0.0053 0.0010 316 PHE A CA 60 C C . PHE A 5 ? 0.0690 0.0220 0.0289 -0.0087 0.0053 -0.0024 316 PHE A C 61 O O . PHE A 5 ? 0.0632 0.0379 0.0247 0.0028 0.0105 -0.0074 316 PHE A O 62 C CB . PHE A 5 ? 0.0706 0.0640 0.0573 0.0038 -0.0084 -0.0286 316 PHE A CB 63 C CG . PHE A 5 ? 0.1020 0.0834 0.0924 0.0154 -0.0100 -0.0489 316 PHE A CG 64 C CD1 . PHE A 5 ? 0.1207 0.0971 0.1199 0.0321 -0.0156 -0.0556 316 PHE A CD1 65 C CD2 . PHE A 5 ? 0.1231 0.1210 0.1188 0.0072 -0.0099 -0.0695 316 PHE A CD2 66 C CE1 . PHE A 5 ? 0.1259 0.1577 0.1281 0.0356 -0.0193 -0.0685 316 PHE A CE1 67 C CE2 . PHE A 5 ? 0.1359 0.1423 0.1346 0.0173 -0.0160 -0.0798 316 PHE A CE2 68 C CZ . PHE A 5 ? 0.1183 0.1065 0.1206 0.0299 -0.0147 -0.0611 316 PHE A CZ 77 N N . SER A 6 ? 0.0851 0.0257 0.0547 -0.0089 0.0086 -0.0012 317 SER A N 78 C CA . SER A 6 ? 0.0984 0.0641 0.0645 -0.0149 0.0061 0.0004 317 SER A CA 79 C C . SER A 6 ? 0.1062 0.0875 0.0365 -0.0048 -0.0035 -0.0003 317 SER A C 80 O O . SER A 6 ? 0.1154 0.0747 0.0372 0.0131 -0.0039 -0.0009 317 SER A O 81 C CB . SER A 6 ? 0.1173 0.1125 0.1023 0.0043 0.0070 -0.0104 317 SER A CB 82 O OG . SER A 6 ? 0.1267 0.1213 0.1132 0.0018 -0.0002 -0.0276 317 SER A OG 83 O OXT . SER A 6 ? 0.0968 0.0869 0.0296 -0.0108 -0.0075 -0.0043 317 SER A OXT 89 O O . HOH B . ? 0.0503 0.0447 0.0218 0.0068 0.0059 -0.0102 401 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 312 312 ASN ASN A . n A 1 2 PHE 2 313 313 PHE PHE A . n A 1 3 GLY 3 314 314 GLY GLY A . n A 1 4 TPO 4 315 315 TPO TPO A . n A 1 5 PHE 5 316 316 PHE PHE A . n A 1 6 SER 6 317 317 SER SER A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.7200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.4400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.7200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.4400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 3_565 -x,y+3/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7.0800000000 0.0000000000 0.0000000000 -1.0000000000 15.0300000000 7 'crystal symmetry operation' 3_555 -x,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2.3600000000 0.0000000000 0.0000000000 -1.0000000000 15.0300000000 8 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -2.3600000000 0.0000000000 0.0000000000 -1.0000000000 15.0300000000 9 'crystal symmetry operation' 3_535 -x,y-3/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -7.0800000000 0.0000000000 0.0000000000 -1.0000000000 15.0300000000 10 'crystal symmetry operation' 3_525 -x,y-5/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -11.8000000000 0.0000000000 0.0000000000 -1.0000000000 15.0300000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-06-06 3 'Structure model' 1 2 2018-06-13 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2021-06-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' pdbx_audit_support 5 5 'Structure model' diffrn_detector # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_pdbx_audit_support.funding_organization' 8 5 'Structure model' '_diffrn_detector.detector' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 4 # _em_3d_fitting.entry_id 6CF4 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 19.6 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'maximum likihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6CF4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ;Density map was obtained using measured diffraction intensities and phases acquired from a crystallographic direct methods program, shelxd. ; _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'crystal of NFGTFS phosphorylated on threonine.' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6CF4 _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6CF4 _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 100 _em_imaging.recording_temperature_minimum 100 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6CF4 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6CF4 _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O1P _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TPO _pdbx_validate_symm_contact.auth_seq_id_1 315 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HOP2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 TPO _pdbx_validate_symm_contact.auth_seq_id_2 315 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_545 _pdbx_validate_symm_contact.dist 1.52 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90.00 _em_3d_crystal_entity.angle_beta 90.00 _em_3d_crystal_entity.angle_gamma 90.00 _em_3d_crystal_entity.length_a 23.650 _em_3d_crystal_entity.length_b 4.720 _em_3d_crystal_entity.length_c 30.060 _em_3d_crystal_entity.space_group_name 'P 21 21 21' _em_3d_crystal_entity.space_group_num 19 # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere 'air, sealed chamber' _em_crystal_formation.details 'Crystals were prepared by shaking peptide in microcentrifuge tube at 37 deg Celsius for 4 days.' _em_crystal_formation.instrument 'microcentrifuge tube' _em_crystal_formation.lipid_mixture none _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 310 _em_crystal_formation.time 4 _em_crystal_formation.time_unit DAY # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 819 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # loop_ _em_diffraction_shell.id _em_diffraction_shell.em_diffraction_stats_id _em_diffraction_shell.fourier_space_coverage _em_diffraction_shell.high_resolution _em_diffraction_shell.low_resolution _em_diffraction_shell.multiplicity _em_diffraction_shell.num_structure_factors _em_diffraction_shell.phase_residual 1 1 85 7.65 1.08 3.6 1300 20.96 2 1 88 1.08 0.86 3.9 1241 37.03 3 1 88 0.86 0.75 3.9 1209 39.38 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 86.6 _em_diffraction_stats.high_resolution 0.75 _em_diffraction_stats.num_intensities_measured 15891 _em_diffraction_stats.num_structure_factors 4177 _em_diffraction_stats.overall_phase_error 32.2 _em_diffraction_stats.overall_phase_residual 32.2 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 17.2 _em_diffraction_stats.r_sym 17.2 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time 3 _em_image_recording.details 'The detector was operated in rolling shutter mode with 2X2 pixel binning.' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images 100 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? EM-Menu ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION 'direct methods' SHELXD 2013/2 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AG029430 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #