data_6CLC # _entry.id 6CLC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CLC pdb_00006clc 10.2210/pdb6clc/pdb WWPDB D_1000232889 ? ? EMDB EMD-7495 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-16 2 'Structure model' 1 1 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CLC _pdbx_database_status.recvd_initial_deposition_date 2018-03-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '1.01 A MicroED structure of GSNQNNF at 0.27 e- / A^2' _pdbx_database_related.db_id EMD-7495 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hattne, J.' 1 0000-0002-8936-0912 'Shi, D.' 2 ? 'Glynn, C.' 3 ? 'Zee, C.-T.' 4 ? 'Gallagher-Jones, M.' 5 ? 'Martynowycz, M.W.' 6 0000-0003-0055-230X 'Rodriguez, J.A.' 7 ? 'Gonen, T.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 1878-4186 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 759 _citation.page_last 766.e4 _citation.title 'Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2018.03.021 _citation.pdbx_database_id_PubMed 29706530 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hattne, J.' 1 ? primary 'Shi, D.' 2 ? primary 'Glynn, C.' 3 ? primary 'Zee, C.T.' 4 ? primary 'Gallagher-Jones, M.' 5 ? primary 'Martynowycz, M.W.' 6 ? primary 'Rodriguez, J.A.' 7 ? primary 'Gonen, T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn GSNQNNF 779.756 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSNQNNF _entity_poly.pdbx_seq_one_letter_code_can GSNQNNF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'ZINC ION' ZN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASN n 1 4 GLN n 1 5 ASN n 1 6 ASN n 1 7 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 PHE 7 7 7 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 101 1 ACT ACT A . C 3 ZN 1 102 1 ZN ZN A . D 4 HOH 1 201 3 HOH HOH A . D 4 HOH 2 202 1 HOH HOH A . D 4 HOH 3 203 2 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0194 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 # _cell.angle_alpha 83.57 _cell.angle_alpha_esd ? _cell.angle_beta 85.90 _cell.angle_beta_esd ? _cell.angle_gamma 82.80 _cell.angle_gamma_esd ? _cell.entry_id 6CLC _cell.details ? _cell.formula_units_Z ? _cell.length_a 4.850 _cell.length_a_esd ? _cell.length_b 14.150 _cell.length_b_esd ? _cell.length_c 17.530 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CLC _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.area_resol_mean ? _diffrn_detector.details ? _diffrn_detector.detector ? _diffrn_detector.diffrn_id 1 _diffrn_detector.dtime ? _diffrn_detector.pdbx_collection_date 2017-07-29 _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.type ? # _refine.aniso_B[1][1] -0.36 _refine.aniso_B[1][2] -0.01 _refine.aniso_B[1][3] -0.05 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[2][3] -0.26 _refine.aniso_B[3][3] 0.27 _refine.B_iso_max ? _refine.B_iso_mean 2.376 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6CLC _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.01 _refine.ls_d_res_low 13.96 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1685 _refine.ls_number_reflns_R_free 167 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 77.20 _refine.ls_percent_reflns_R_free 9.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.17593 _refine.ls_R_factor_R_free 0.15862 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.17766 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.042 _refine.pdbx_overall_ESU_R_Free 0.035 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.407 _refine.overall_SU_ML 0.021 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 63 _refine_hist.d_res_high . _refine_hist.d_res_low . # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.024 0.020 58 ? r_bond_refined_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.000 0.020 39 ? r_bond_other_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.808 1.886 76 ? r_angle_refined_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.130 3.000 92 ? r_angle_other_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.959 5.000 6 ? r_dihedral_angle_1_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 62.501 28.000 5 ? r_dihedral_angle_2_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 7.671 15.000 7 ? r_dihedral_angle_3_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.144 0.200 6 ? r_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.009 0.020 73 ? r_gen_planes_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.000 0.020 11 ? r_gen_planes_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.281 0.217 28 ? r_mcbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.270 0.210 26 ? r_mcbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.405 0.316 29 ? r_mcangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.401 0.316 30 ? r_mcangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.351 0.238 30 ? r_scbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.345 0.242 31 ? r_scbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.507 0.355 45 ? r_scangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.619 2.233 44 ? r_long_range_B_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.606 2.256 44 ? r_long_range_B_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.011 _refine_ls_shell.d_res_low 1.037 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 10 _refine_ls_shell.number_reflns_R_work 112 _refine_ls_shell.percent_reflns_obs 74.85 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.207 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6CLC _struct.title '1.01 A MicroED structure of GSNQNNF at 0.27 e- / A^2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CLC _struct_keywords.text 'Amyloid fibril, prion, zinc binding, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CLC _struct_ref.pdbx_db_accession 6CLC _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6CLC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 7 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6CLC _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 7 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 120 ? 1 MORE -15 ? 1 'SSA (A^2)' 1190 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLY 1 N ? ? ? 1_555 C ZN . ZN ? ? A GLY 1 A ZN 102 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc2 metalc ? ? A GLY 1 O ? ? ? 1_555 C ZN . ZN ? ? A GLY 1 A ZN 102 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc3 metalc ? ? A PHE 7 OXT ? ? ? 1_555 C ZN . ZN ? ? A PHE 7 A ZN 102 1_644 ? ? ? ? ? ? ? 2.050 ? ? metalc4 metalc ? ? B ACT . O ? ? ? 1_555 C ZN . ZN ? ? A ACT 101 A ZN 102 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc5 metalc ? ? B ACT . OXT ? ? ? 1_555 C ZN . ZN ? ? A ACT 101 A ZN 102 1_455 ? ? ? ? ? ? ? 2.028 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? A GLY 1 ? A GLY 1 ? 1_555 77.2 ? 2 N ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OXT ? A PHE 7 ? A PHE 7 ? 1_555 111.5 ? 3 O ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OXT ? A PHE 7 ? A PHE 7 ? 1_555 50.3 ? 4 N ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? B ACT . ? A ACT 101 ? 1_555 141.4 ? 5 O ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? B ACT . ? A ACT 101 ? 1_555 85.4 ? 6 OXT ? A PHE 7 ? A PHE 7 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? B ACT . ? A ACT 101 ? 1_555 81.1 ? 7 N ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OXT ? B ACT . ? A ACT 101 ? 1_555 147.2 ? 8 O ? A GLY 1 ? A GLY 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OXT ? B ACT . ? A ACT 101 ? 1_555 87.4 ? 9 OXT ? A PHE 7 ? A PHE 7 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OXT ? B ACT . ? A ACT 101 ? 1_555 78.2 ? 10 O ? B ACT . ? A ACT 101 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OXT ? B ACT . ? A ACT 101 ? 1_555 5.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 101 ? 2 'binding site for residue ACT A 101' AC2 Software A ZN 102 ? 2 'binding site for residue ZN A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLY A 1 ? GLY A 1 . ? 1_555 ? 2 AC1 2 ZN C . ? ZN A 102 . ? 1_555 ? 3 AC2 2 GLY A 1 ? GLY A 1 . ? 1_555 ? 4 AC2 2 ACT B . ? ACT A 101 . ? 1_555 ? # _em_3d_fitting.entry_id 6CLC _em_3d_fitting.id 1 _em_3d_fitting.details 'Electron scattering factors' _em_3d_fitting.overall_b_value 2.376 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6CLC _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 1.01 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 6.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Synthetic proto-filament' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6CLC _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 31.2 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6CLC _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 30 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6CLC _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6CLC _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ASN N N N N 8 ASN CA C N S 9 ASN C C N N 10 ASN O O N N 11 ASN CB C N N 12 ASN CG C N N 13 ASN OD1 O N N 14 ASN ND2 N N N 15 ASN OXT O N N 16 ASN H H N N 17 ASN H2 H N N 18 ASN HA H N N 19 ASN HB2 H N N 20 ASN HB3 H N N 21 ASN HD21 H N N 22 ASN HD22 H N N 23 ASN HXT H N N 24 GLN N N N N 25 GLN CA C N S 26 GLN C C N N 27 GLN O O N N 28 GLN CB C N N 29 GLN CG C N N 30 GLN CD C N N 31 GLN OE1 O N N 32 GLN NE2 N N N 33 GLN OXT O N N 34 GLN H H N N 35 GLN H2 H N N 36 GLN HA H N N 37 GLN HB2 H N N 38 GLN HB3 H N N 39 GLN HG2 H N N 40 GLN HG3 H N N 41 GLN HE21 H N N 42 GLN HE22 H N N 43 GLN HXT H N N 44 GLY N N N N 45 GLY CA C N N 46 GLY C C N N 47 GLY O O N N 48 GLY OXT O N N 49 GLY H H N N 50 GLY H2 H N N 51 GLY HA2 H N N 52 GLY HA3 H N N 53 GLY HXT H N N 54 HOH O O N N 55 HOH H1 H N N 56 HOH H2 H N N 57 PHE N N N N 58 PHE CA C N S 59 PHE C C N N 60 PHE O O N N 61 PHE CB C N N 62 PHE CG C Y N 63 PHE CD1 C Y N 64 PHE CD2 C Y N 65 PHE CE1 C Y N 66 PHE CE2 C Y N 67 PHE CZ C Y N 68 PHE OXT O N N 69 PHE H H N N 70 PHE H2 H N N 71 PHE HA H N N 72 PHE HB2 H N N 73 PHE HB3 H N N 74 PHE HD1 H N N 75 PHE HD2 H N N 76 PHE HE1 H N N 77 PHE HE2 H N N 78 PHE HZ H N N 79 PHE HXT H N N 80 SER N N N N 81 SER CA C N S 82 SER C C N N 83 SER O O N N 84 SER CB C N N 85 SER OG O N N 86 SER OXT O N N 87 SER H H N N 88 SER H2 H N N 89 SER HA H N N 90 SER HB2 H N N 91 SER HB3 H N N 92 SER HG H N N 93 SER HXT H N N 94 ZN ZN ZN N N 95 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ASN N CA sing N N 7 ASN N H sing N N 8 ASN N H2 sing N N 9 ASN CA C sing N N 10 ASN CA CB sing N N 11 ASN CA HA sing N N 12 ASN C O doub N N 13 ASN C OXT sing N N 14 ASN CB CG sing N N 15 ASN CB HB2 sing N N 16 ASN CB HB3 sing N N 17 ASN CG OD1 doub N N 18 ASN CG ND2 sing N N 19 ASN ND2 HD21 sing N N 20 ASN ND2 HD22 sing N N 21 ASN OXT HXT sing N N 22 GLN N CA sing N N 23 GLN N H sing N N 24 GLN N H2 sing N N 25 GLN CA C sing N N 26 GLN CA CB sing N N 27 GLN CA HA sing N N 28 GLN C O doub N N 29 GLN C OXT sing N N 30 GLN CB CG sing N N 31 GLN CB HB2 sing N N 32 GLN CB HB3 sing N N 33 GLN CG CD sing N N 34 GLN CG HG2 sing N N 35 GLN CG HG3 sing N N 36 GLN CD OE1 doub N N 37 GLN CD NE2 sing N N 38 GLN NE2 HE21 sing N N 39 GLN NE2 HE22 sing N N 40 GLN OXT HXT sing N N 41 GLY N CA sing N N 42 GLY N H sing N N 43 GLY N H2 sing N N 44 GLY CA C sing N N 45 GLY CA HA2 sing N N 46 GLY CA HA3 sing N N 47 GLY C O doub N N 48 GLY C OXT sing N N 49 GLY OXT HXT sing N N 50 HOH O H1 sing N N 51 HOH O H2 sing N N 52 PHE N CA sing N N 53 PHE N H sing N N 54 PHE N H2 sing N N 55 PHE CA C sing N N 56 PHE CA CB sing N N 57 PHE CA HA sing N N 58 PHE C O doub N N 59 PHE C OXT sing N N 60 PHE CB CG sing N N 61 PHE CB HB2 sing N N 62 PHE CB HB3 sing N N 63 PHE CG CD1 doub Y N 64 PHE CG CD2 sing Y N 65 PHE CD1 CE1 sing Y N 66 PHE CD1 HD1 sing N N 67 PHE CD2 CE2 doub Y N 68 PHE CD2 HD2 sing N N 69 PHE CE1 CZ doub Y N 70 PHE CE1 HE1 sing N N 71 PHE CE2 CZ sing Y N 72 PHE CE2 HE2 sing N N 73 PHE CZ HZ sing N N 74 PHE OXT HXT sing N N 75 SER N CA sing N N 76 SER N H sing N N 77 SER N H2 sing N N 78 SER CA C sing N N 79 SER CA CB sing N N 80 SER CA HA sing N N 81 SER C O doub N N 82 SER C OXT sing N N 83 SER CB OG sing N N 84 SER CB HB2 sing N N 85 SER CB HB3 sing N N 86 SER OG HG sing N N 87 SER OXT HXT sing N N 88 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 83.567 _em_3d_crystal_entity.angle_beta 85.895 _em_3d_crystal_entity.angle_gamma 82.803 _em_3d_crystal_entity.length_a 4.85 _em_3d_crystal_entity.length_b 14.15 _em_3d_crystal_entity.length_c 17.53 _em_3d_crystal_entity.space_group_name P1 _em_3d_crystal_entity.space_group_num 1 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 0.1 M C6H13NO4S MES 1 2 10 % C6H14O2 MPD # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 730 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 74.85 _em_diffraction_shell.high_resolution 1.01 _em_diffraction_shell.low_resolution 1.04 _em_diffraction_shell.multiplicity 5.4 _em_diffraction_shell.num_structure_factors 122 _em_diffraction_shell.phase_residual 29.54 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 76.6 _em_diffraction_stats.high_resolution 1.01 _em_diffraction_stats.num_intensities_measured 11128 _em_diffraction_stats.num_structure_factors 1891 _em_diffraction_stats.overall_phase_error 23.68 _em_diffraction_stats.overall_phase_residual 23.68 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.160 _em_diffraction_stats.r_sym 0.160 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.000899141 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image .00588 _em_image_recording.average_exposure_time 2.1 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images 736 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 736 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? EM-Menu 4.0.9.75 ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0194 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 10 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _atom_sites.entry_id 6CLC _atom_sites.fract_transf_matrix[1][1] 0.206186 _atom_sites.fract_transf_matrix[1][2] -0.026036 _atom_sites.fract_transf_matrix[1][3] -0.012152 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.071233 _atom_sites.fract_transf_matrix[2][3] -0.007460 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.057505 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O ZN # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLY A 1 1 ? 3.397 30.595 19.349 1.00 3.26 ? 1 GLY A N 1 ATOM 2 C CA . GLY A 1 1 ? 3.812 30.595 17.904 1.00 3.36 ? 1 GLY A CA 1 ATOM 3 C C . GLY A 1 1 ? 2.787 29.702 17.125 1.00 2.94 ? 1 GLY A C 1 ATOM 4 O O . GLY A 1 1 ? 1.975 29.021 17.752 1.00 3.64 ? 1 GLY A O 1 ATOM 5 N N . SER A 1 2 ? 2.869 29.741 15.811 1.00 2.69 ? 2 SER A N 1 ATOM 6 C CA . SER A 1 2 ? 2.043 28.923 14.985 1.00 2.45 ? 2 SER A CA 1 ATOM 7 C C . SER A 1 2 ? 2.755 27.662 14.556 1.00 2.20 ? 2 SER A C 1 ATOM 8 O O . SER A 1 2 ? 4.003 27.640 14.517 1.00 2.20 ? 2 SER A O 1 ATOM 9 C CB . SER A 1 2 ? 1.496 29.767 13.825 1.00 2.51 ? 2 SER A CB 1 ATOM 10 O OG . SER A 1 2 ? 0.520 30.690 14.310 1.00 2.83 ? 2 SER A OG 1 ATOM 11 N N . ASN A 1 3 ? 1.987 26.586 14.283 1.00 1.99 ? 3 ASN A N 1 ATOM 12 C CA . ASN A 1 3 ? 2.606 25.292 13.988 1.00 1.96 ? 3 ASN A CA 1 ATOM 13 C C . ASN A 1 3 ? 1.973 24.717 12.717 1.00 1.74 ? 3 ASN A C 1 ATOM 14 O O . ASN A 1 3 ? 0.735 24.775 12.568 1.00 1.61 ? 3 ASN A O 1 ATOM 15 C CB . ASN A 1 3 ? 2.440 24.333 15.223 1.00 2.40 ? 3 ASN A CB 1 ATOM 16 C CG . ASN A 1 3 ? 3.023 24.968 16.495 1.00 2.71 ? 3 ASN A CG 1 ATOM 17 O OD1 . ASN A 1 3 ? 2.287 25.631 17.286 1.00 3.31 ? 3 ASN A OD1 1 ATOM 18 N ND2 . ASN A 1 3 ? 4.311 24.809 16.686 1.00 3.14 ? 3 ASN A ND2 1 ATOM 19 N N . GLN A 1 4 ? 2.770 24.094 11.836 1.00 1.49 ? 4 GLN A N 1 ATOM 20 C CA . GLN A 1 4 ? 2.233 23.452 10.643 1.00 1.44 ? 4 GLN A CA 1 ATOM 21 C C . GLN A 1 4 ? 2.948 22.106 10.424 1.00 1.55 ? 4 GLN A C 1 ATOM 22 O O . GLN A 1 4 ? 4.199 22.030 10.491 1.00 1.62 ? 4 GLN A O 1 ATOM 23 C CB . GLN A 1 4 ? 2.449 24.305 9.420 1.00 1.36 ? 4 GLN A CB 1 ATOM 24 C CG . GLN A 1 4 ? 1.737 23.814 8.170 1.00 1.38 ? 4 GLN A CG 1 ATOM 25 C CD . GLN A 1 4 ? 2.188 24.588 6.891 1.00 1.40 ? 4 GLN A CD 1 ATOM 26 O OE1 . GLN A 1 4 ? 3.412 24.681 6.577 1.00 1.50 ? 4 GLN A OE1 1 ATOM 27 N NE2 . GLN A 1 4 ? 1.259 25.273 6.237 1.00 1.36 ? 4 GLN A NE2 1 ATOM 28 N N . ASN A 1 5 ? 2.133 21.062 10.237 1.00 1.82 ? 5 ASN A N 1 ATOM 29 C CA . ASN A 1 5 ? 2.648 19.741 9.905 1.00 2.06 ? 5 ASN A CA 1 ATOM 30 C C . ASN A 1 5 ? 2.258 19.369 8.481 1.00 2.06 ? 5 ASN A C 1 ATOM 31 O O . ASN A 1 5 ? 1.091 19.386 8.111 1.00 2.86 ? 5 ASN A O 1 ATOM 32 C CB . ASN A 1 5 ? 2.054 18.679 10.893 1.00 2.60 ? 5 ASN A CB 1 ATOM 33 C CG . ASN A 1 5 ? 2.546 18.924 12.313 1.00 3.15 ? 5 ASN A CG 1 ATOM 34 O OD1 . ASN A 1 5 ? 3.766 18.709 12.590 1.00 4.32 ? 5 ASN A OD1 1 ATOM 35 N ND2 . ASN A 1 5 ? 1.646 19.397 13.257 1.00 3.70 ? 5 ASN A ND2 1 ATOM 36 N N . ASN A 1 6 ? 3.238 19.116 7.647 1.00 1.86 ? 6 ASN A N 1 ATOM 37 C CA . ASN A 1 6 ? 3.017 18.699 6.276 1.00 1.80 ? 6 ASN A CA 1 ATOM 38 C C . ASN A 1 6 ? 3.496 17.255 6.093 1.00 1.79 ? 6 ASN A C 1 ATOM 39 O O . ASN A 1 6 ? 4.704 17.009 5.837 1.00 1.83 ? 6 ASN A O 1 ATOM 40 C CB . ASN A 1 6 ? 3.723 19.650 5.309 1.00 1.81 ? 6 ASN A CB 1 ATOM 41 C CG . ASN A 1 6 ? 3.316 21.079 5.530 1.00 1.84 ? 6 ASN A CG 1 ATOM 42 O OD1 . ASN A 1 6 ? 2.140 21.454 5.406 1.00 2.06 ? 6 ASN A OD1 1 ATOM 43 N ND2 . ASN A 1 6 ? 4.279 21.914 5.839 1.00 1.90 ? 6 ASN A ND2 1 ATOM 44 N N . PHE A 1 7 ? 2.568 16.338 6.211 1.00 1.83 ? 7 PHE A N 1 ATOM 45 C CA . PHE A 1 7 ? 2.910 14.890 6.069 1.00 1.96 ? 7 PHE A CA 1 ATOM 46 C C . PHE A 1 7 ? 3.166 14.518 4.635 1.00 2.26 ? 7 PHE A C 1 ATOM 47 O O . PHE A 1 7 ? 2.691 15.180 3.664 1.00 2.64 ? 7 PHE A O 1 ATOM 48 C CB . PHE A 1 7 ? 1.887 14.010 6.692 1.00 1.98 ? 7 PHE A CB 1 ATOM 49 C CG . PHE A 1 7 ? 1.819 14.155 8.180 1.00 2.26 ? 7 PHE A CG 1 ATOM 50 C CD1 . PHE A 1 7 ? 2.647 13.390 8.985 1.00 2.45 ? 7 PHE A CD1 1 ATOM 51 C CD2 . PHE A 1 7 ? 0.969 15.094 8.803 1.00 2.54 ? 7 PHE A CD2 1 ATOM 52 C CE1 . PHE A 1 7 ? 2.630 13.483 10.356 1.00 2.69 ? 7 PHE A CE1 1 ATOM 53 C CE2 . PHE A 1 7 ? 0.915 15.205 10.186 1.00 2.79 ? 7 PHE A CE2 1 ATOM 54 C CZ . PHE A 1 7 ? 1.795 14.409 10.988 1.00 2.89 ? 7 PHE A CZ 1 ATOM 55 O OXT . PHE A 1 7 ? 3.839 13.487 4.429 1.00 2.31 ? 7 PHE A OXT 1 HETATM 56 C C . ACT B 2 . ? -0.354 27.172 20.041 1.00 3.43 ? 101 ACT A C 1 HETATM 57 O O . ACT B 2 . ? 0.318 28.216 19.844 1.00 3.73 ? 101 ACT A O 1 HETATM 58 O OXT . ACT B 2 . ? -1.628 27.109 19.955 1.00 3.42 ? 101 ACT A OXT 1 HETATM 59 C CH3 . ACT B 2 . ? 0.239 25.853 20.396 1.00 3.65 ? 101 ACT A CH3 1 HETATM 60 ZN ZN . ZN C 3 . ? 2.214 28.865 19.836 1.00 2.89 ? 102 ZN A ZN 1 HETATM 61 O O . HOH D 4 . ? 4.902 22.737 18.504 1.00 10.09 ? 201 HOH A O 1 HETATM 62 O O . HOH D 4 . ? 1.321 17.742 3.253 1.00 7.01 ? 202 HOH A O 1 HETATM 63 O O . HOH D 4 . ? 1.333 20.744 2.481 1.00 11.29 ? 203 HOH A O 1 #