HEADER DNA 18-APR-18 6D4L TITLE JOINT X-RAY/NEUTRON STRUCTURE OF DNA OLIGONUCLEOTIDE D(GTGGCCAC)2 WITH TITLE 2 2'-SECH3 MODIFICATION ON CYT5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA OLIGONUCLEOTIDE SELENIUM MODIFICATION, DNA EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR A.KOVALEVSKY,Z.HUANG,V.G.VANDAVASI REVDAT 5 04-OCT-23 6D4L 1 REMARK REVDAT 4 02-MAR-22 6D4L 1 COMPND REMARK SEQRES LINK REVDAT 3 17-APR-19 6D4L 1 REMARK REVDAT 2 19-DEC-18 6D4L 1 JRNL REVDAT 1 17-OCT-18 6D4L 0 JRNL AUTH V.G.VANDAVASI,M.P.BLAKELEY,D.A.KEEN,L.R.HU,Z.HUANG, JRNL AUTH 2 A.KOVALEVSKY JRNL TITL TEMPERATURE-INDUCED REPLACEMENT OF PHOSPHATE PROTON WITH JRNL TITL 2 METAL ION CAPTURED IN NEUTRON STRUCTURES OF A-DNA. JRNL REF STRUCTURE V. 26 1645 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30244969 JRNL DOI 10.1016/J.STR.2018.08.001 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.ADAMS,M.MUSTYAKIMOV,P.V.AFONINE,P.LANGAN REMARK 1 TITL GENERALIZED X-RAY AND NEUTRON CRYSTALLOGRAPHIC ANALYSIS: REMARK 1 TITL 2 MORE ACCURATE AND COMPLETE STRUCTURES FOR BIOLOGICAL REMARK 1 TITL 3 MACROMOLECULES. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 65 567 2009 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 19465771 REMARK 1 DOI 10.1107/S0907444909011548 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NCNS 1.0.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,MUSTYAKIMOV, REMARK 3 : AFONINE,LANGAN REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 2960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 135 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.1680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 9 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.056 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 163 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.0 REMARK 3 NUMBER OF REFLECTIONS : 1204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 64 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 96 REMARK 3 BIN R VALUE (WORKING SET) : 0.4520 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 6 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.177 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 163 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 15-AUG-15 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 5.60 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : LADI III REMARK 230 WAVELENGTH OR RANGE (A) : 2.8-4.0 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : COLLIMATORS REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : LADI III REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, LAUEGEN REMARK 230 DATA SCALING SOFTWARE : HKL-3000, LSCALE REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 1257 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 230 RESOLUTION RANGE LOW (A) : 20.000 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 74.2 REMARK 230 DATA REDUNDANCY : 5.600 REMARK 230 R MERGE (I) : 0.17600 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 7.7000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 230 COMPLETENESS FOR SHELL (%) : 58.1 REMARK 230 DATA REDUNDANCY IN SHELL : 2.80 REMARK 230 R MERGE FOR SHELL (I) : 0.28900 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER, CNS REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 30% MPD, 0.1 REMARK 280 M MES, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 12.20500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.34750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.34750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.30750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.34750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.34750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 6.10250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.34750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.34750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.30750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.34750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.34750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 6.10250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 12.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -12.20500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O DOD A 206 D2 DOD A 224 1.45 REMARK 500 O DOD A 205 D1 DOD A 227 1.53 REMARK 500 O DOD A 218 D1 DOD A 224 1.60 REMARK 500 O6 DG A 1 D2 DOD A 202 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DOD A 203 O REMARK 620 2 DOD A 209 O 77.8 REMARK 620 3 DOD A 213 O 101.9 105.1 REMARK 620 4 DOD A 223 O 71.1 146.4 93.7 REMARK 620 5 DOD A 228 O 177.2 104.0 79.8 106.7 REMARK 620 6 DOD A 229 O 86.7 81.1 170.2 84.5 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 DBREF 6D4L A 1 8 PDB 6D4L 6D4L 1 8 SEQRES 1 A 8 DG DT DG DG CSL DC DA DC HET CSL A 5 34 HET MG A 101 1 HETNAM CSL (D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN CSL (D)-2'-DEOXY-2'-SE-METHYLCYTIDINE-5'-PHOSPHATE FORMUL 1 CSL C10 H16 N3 O7 P SE FORMUL 2 MG MG 2+ FORMUL 3 DOD *29(D2 O) LINK O3' DG A 4 P CSL A 5 1555 1555 1.61 LINK O3' CSL A 5 P DC A 6 1555 1555 1.61 LINK MG MG A 101 O DOD A 203 1555 1555 2.37 LINK MG MG A 101 O DOD A 209 1555 1555 1.93 LINK MG MG A 101 O DOD A 213 1555 1555 2.16 LINK MG MG A 101 O DOD A 223 1555 1555 2.24 LINK MG MG A 101 O DOD A 228 1555 1555 2.30 LINK MG MG A 101 O DOD A 229 1555 1555 2.35 SITE 1 AC1 6 DOD A 203 DOD A 209 DOD A 213 DOD A 223 SITE 2 AC1 6 DOD A 228 DOD A 229 CRYST1 42.695 42.695 24.410 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.040967 0.00000 ATOM 1 O5' DG A 1 -1.245 -7.409 -10.897 1.00 21.35 O ATOM 2 C5' DG A 1 -2.554 -7.120 -10.440 1.00 20.30 C ATOM 3 C4' DG A 1 -3.173 -8.337 -9.789 1.00 19.93 C ATOM 4 O4' DG A 1 -3.197 -9.439 -10.731 1.00 18.62 O ATOM 5 C3' DG A 1 -2.442 -8.887 -8.562 1.00 20.27 C ATOM 6 O3' DG A 1 -2.918 -8.241 -7.371 1.00 21.53 O ATOM 7 C2' DG A 1 -2.873 -10.344 -8.570 1.00 20.29 C ATOM 8 C1' DG A 1 -2.870 -10.659 -10.056 1.00 18.32 C ATOM 9 N9 DG A 1 -1.576 -11.131 -10.549 1.00 18.26 N ATOM 10 C8 DG A 1 -0.683 -10.450 -11.352 1.00 17.32 C ATOM 11 N7 DG A 1 0.378 -11.154 -11.657 1.00 17.09 N ATOM 12 C5 DG A 1 0.181 -12.371 -11.010 1.00 16.44 C ATOM 13 C6 DG A 1 0.986 -13.529 -10.979 1.00 15.45 C ATOM 14 O6 DG A 1 2.056 -13.725 -11.533 1.00 15.39 O ATOM 15 N1 DG A 1 0.415 -14.536 -10.207 1.00 15.53 N ATOM 16 C2 DG A 1 -0.780 -14.442 -9.550 1.00 17.00 C ATOM 17 N2 DG A 1 -1.164 -15.550 -8.862 1.00 17.81 N ATOM 18 N3 DG A 1 -1.551 -13.356 -9.567 1.00 15.90 N ATOM 19 C4 DG A 1 -1.014 -12.371 -10.314 1.00 16.49 C ATOM 20 H5' DG A 1 -3.173 -6.812 -11.284 1.00 20.74 H ATOM 21 H5'' DG A 1 -2.509 -6.307 -9.716 1.00 20.74 H ATOM 22 H4' DG A 1 -4.166 -8.048 -9.450 1.00 19.59 H ATOM 23 H3' DG A 1 -1.360 -8.769 -8.651 1.00 20.58 H ATOM 24 H2' DG A 1 -2.186 -10.972 -8.011 1.00 19.35 H ATOM 25 H2'' DG A 1 -3.857 -10.465 -8.106 1.00 19.67 H ATOM 26 H1' DG A 1 -3.633 -11.397 -10.309 1.00 18.97 H ATOM 27 D8 A DG A 1 -0.842 -9.438 -11.695 0.36 17.46 D ATOM 28 H8 B DG A 1 -0.842 -9.438 -11.695 0.64 17.46 H ATOM 29 D1 DG A 1 0.932 -15.388 -10.142 1.00 15.06 D ATOM 30 D21A DG A 1 -2.030 -15.579 -8.354 0.72 15.14 D ATOM 31 H21B DG A 1 -2.030 -15.579 -8.354 0.28 15.14 H ATOM 32 D22A DG A 1 -0.569 -16.367 -8.885 0.55 16.18 D ATOM 33 H22B DG A 1 -0.569 -16.367 -8.885 0.45 16.18 H ATOM 34 D5TA DG A 1 -1.163 -6.962 -11.735 0.36 21.05 D ATOM 35 H5TB DG A 1 -1.163 -6.962 -11.735 0.64 21.05 H ATOM 36 P DT A 2 -1.919 -7.947 -6.141 1.00 22.26 P ATOM 37 OP1 DT A 2 -2.713 -7.156 -5.157 1.00 23.56 O ATOM 38 OP2 DT A 2 -0.650 -7.393 -6.666 1.00 22.75 O ATOM 39 O5' DT A 2 -1.629 -9.375 -5.492 1.00 21.53 O ATOM 40 C5' DT A 2 -2.567 -9.953 -4.595 1.00 21.68 C ATOM 41 C4' DT A 2 -2.200 -11.384 -4.285 1.00 22.82 C ATOM 42 O4' DT A 2 -2.010 -12.141 -5.502 1.00 22.19 O ATOM 43 C3' DT A 2 -0.893 -11.586 -3.526 1.00 23.89 C ATOM 44 O3' DT A 2 -1.094 -11.326 -2.133 1.00 24.98 O ATOM 45 C2' DT A 2 -0.619 -13.053 -3.800 1.00 23.29 C ATOM 46 C1' DT A 2 -1.009 -13.143 -5.281 1.00 22.51 C ATOM 47 N1 DT A 2 0.132 -12.896 -6.214 1.00 20.39 N ATOM 48 C2 DT A 2 1.000 -13.945 -6.439 1.00 21.84 C ATOM 49 O2 DT A 2 0.863 -15.046 -5.929 1.00 22.57 O ATOM 50 N3 DT A 2 2.039 -13.662 -7.288 1.00 19.63 N ATOM 51 C4 DT A 2 2.288 -12.475 -7.948 1.00 19.17 C ATOM 52 O4 DT A 2 3.224 -12.403 -8.737 1.00 19.11 O ATOM 53 C5 DT A 2 1.350 -11.405 -7.673 1.00 20.79 C ATOM 54 C7 DT A 2 1.593 -10.055 -8.300 1.00 18.83 C ATOM 55 C6 DT A 2 0.324 -11.666 -6.824 1.00 18.85 C ATOM 56 H5' DT A 2 -3.555 -9.930 -5.047 1.00 21.18 H ATOM 57 H5'' DT A 2 -2.591 -9.377 -3.665 1.00 22.28 H ATOM 58 H4' DT A 2 -2.994 -11.791 -3.648 1.00 22.62 H ATOM 59 H3' DT A 2 -0.104 -10.937 -3.913 1.00 23.46 H ATOM 60 H2' DT A 2 0.426 -13.306 -3.632 1.00 23.76 H ATOM 61 H2'' DT A 2 -1.207 -13.695 -3.137 1.00 23.97 H ATOM 62 H1' DT A 2 -1.452 -14.114 -5.511 1.00 22.45 H ATOM 63 D3 A DT A 2 2.757 -14.360 -7.371 0.96 18.36 D ATOM 64 H3 B DT A 2 2.757 -14.360 -7.371 0.04 18.36 H ATOM 65 H71 DT A 2 2.652 -9.783 -8.186 1.00 19.41 H ATOM 66 H72 DT A 2 1.339 -10.095 -9.362 1.00 20.97 H ATOM 67 H73 DT A 2 0.975 -9.299 -7.811 1.00 20.55 H ATOM 68 H6 DT A 2 -0.385 -10.871 -6.611 1.00 20.38 H ATOM 69 P DG A 3 0.078 -10.650 -1.264 1.00 28.05 P ATOM 70 OP1 DG A 3 -0.535 -10.343 0.058 1.00 29.35 O ATOM 71 OP2 DG A 3 0.770 -9.577 -2.024 1.00 26.20 O ATOM 72 O5' DG A 3 1.118 -11.833 -1.048 1.00 28.30 O ATOM 73 C5' DG A 3 0.796 -12.931 -0.208 1.00 27.63 C ATOM 74 C4' DG A 3 1.774 -14.059 -0.436 1.00 27.90 C ATOM 75 O4' DG A 3 1.746 -14.485 -1.821 1.00 27.45 O ATOM 76 C3' DG A 3 3.252 -13.750 -0.215 1.00 28.02 C ATOM 77 O3' DG A 3 3.597 -13.664 1.180 1.00 29.90 O ATOM 78 C2' DG A 3 3.884 -14.960 -0.880 1.00 26.97 C ATOM 79 C1' DG A 3 3.034 -15.034 -2.152 1.00 24.03 C ATOM 80 N9 DG A 3 3.610 -14.269 -3.260 1.00 23.17 N ATOM 81 C8 DG A 3 3.276 -13.008 -3.701 1.00 20.80 C ATOM 82 N7 DG A 3 3.979 -12.622 -4.730 1.00 19.27 N ATOM 83 C5 DG A 3 4.837 -13.689 -4.978 1.00 19.08 C ATOM 84 C6 DG A 3 5.825 -13.861 -5.972 1.00 16.33 C ATOM 85 O6 DG A 3 6.120 -13.102 -6.888 1.00 16.79 O ATOM 86 N1 DG A 3 6.491 -15.081 -5.830 1.00 17.21 N ATOM 87 C2 DG A 3 6.213 -16.017 -4.872 1.00 17.73 C ATOM 88 N2 DG A 3 6.969 -17.117 -4.863 1.00 15.91 N ATOM 89 N3 DG A 3 5.263 -15.884 -3.971 1.00 19.57 N ATOM 90 C4 DG A 3 4.628 -14.703 -4.075 1.00 18.79 C ATOM 91 H5' DG A 3 -0.216 -13.281 -0.429 1.00 28.74 H ATOM 92 H5'' DG A 3 0.847 -12.617 0.838 1.00 27.65 H ATOM 93 H4' DG A 3 1.511 -14.861 0.258 1.00 27.95 H ATOM 94 H3' DG A 3 3.537 -12.821 -0.719 1.00 28.50 H ATOM 95 H2' DG A 3 4.933 -14.795 -1.096 1.00 26.67 H ATOM 96 H2'' DG A 3 3.835 -15.842 -0.233 1.00 27.50 H ATOM 97 H1' DG A 3 2.891 -16.069 -2.471 1.00 26.08 H ATOM 98 D8 A DG A 3 2.526 -12.389 -3.230 0.26 21.07 D ATOM 99 H8 B DG A 3 2.526 -12.389 -3.230 0.74 21.07 H ATOM 100 D1 A DG A 3 7.238 -15.311 -6.469 0.90 16.81 D ATOM 101 H1 B DG A 3 7.238 -15.311 -6.469 0.10 16.81 H ATOM 102 D21A DG A 3 6.792 -17.819 -4.163 0.73 15.35 D ATOM 103 H21B DG A 3 6.792 -17.819 -4.163 0.27 15.35 H ATOM 104 D22A DG A 3 7.709 -17.253 -5.530 0.83 16.47 D ATOM 105 H22B DG A 3 7.709 -17.253 -5.530 0.17 16.47 H ATOM 106 P DG A 4 4.867 -12.775 1.637 1.00 31.19 P ATOM 107 OP1 DG A 4 4.926 -12.772 3.129 1.00 32.84 O ATOM 108 OP2 DG A 4 4.828 -11.480 0.908 1.00 29.95 O ATOM 109 O5' DG A 4 6.129 -13.588 1.087 1.00 29.67 O ATOM 110 C5' DG A 4 6.613 -14.745 1.772 1.00 29.58 C ATOM 111 C4' DG A 4 7.618 -15.492 0.920 1.00 28.04 C ATOM 112 O4' DG A 4 7.115 -15.670 -0.430 1.00 27.70 O ATOM 113 C3' DG A 4 8.975 -14.826 0.712 1.00 27.75 C ATOM 114 O3' DG A 4 9.824 -14.996 1.863 1.00 27.91 O ATOM 115 C2' DG A 4 9.487 -15.603 -0.487 1.00 27.01 C ATOM 116 C1' DG A 4 8.217 -15.653 -1.345 1.00 26.11 C ATOM 117 N9 DG A 4 8.085 -14.486 -2.223 1.00 22.45 N ATOM 118 C8 DG A 4 7.255 -13.396 -2.081 1.00 22.74 C ATOM 119 N7 DG A 4 7.403 -12.511 -3.027 1.00 20.67 N ATOM 120 C5 DG A 4 8.387 -13.045 -3.841 1.00 18.12 C ATOM 121 C6 DG A 4 8.979 -12.539 -5.031 1.00 15.81 C ATOM 122 O6 DG A 4 8.693 -11.510 -5.672 1.00 16.15 O ATOM 123 N1 DG A 4 9.997 -13.374 -5.473 1.00 15.08 N ATOM 124 C2 DG A 4 10.362 -14.562 -4.910 1.00 15.06 C ATOM 125 N2 DG A 4 11.406 -15.190 -5.499 1.00 14.23 N ATOM 126 N3 DG A 4 9.776 -15.080 -3.848 1.00 18.78 N ATOM 127 C4 DG A 4 8.819 -14.262 -3.355 1.00 19.08 C ATOM 128 H5' DG A 4 5.781 -15.412 2.002 1.00 29.84 H ATOM 129 H5'' DG A 4 7.093 -14.444 2.703 1.00 28.89 H ATOM 130 H4' DG A 4 7.815 -16.443 1.427 1.00 27.66 H ATOM 131 H3' DG A 4 8.862 -13.764 0.488 1.00 29.10 H ATOM 132 H2' DG A 4 10.299 -15.075 -0.983 1.00 26.53 H ATOM 133 H2'' DG A 4 9.883 -16.579 -0.188 1.00 27.29 H ATOM 134 H1' DG A 4 8.176 -16.561 -1.951 1.00 25.83 H ATOM 135 H8 DG A 4 6.579 -13.263 -1.251 1.00 21.53 H ATOM 136 D1 A DG A 4 10.530 -13.115 -6.240 0.97 13.02 D ATOM 137 H1 B DG A 4 10.530 -13.115 -6.240 0.03 13.02 H ATOM 138 D21A DG A 4 11.790 -16.066 -5.173 0.83 12.51 D ATOM 139 H21B DG A 4 11.790 -16.066 -5.173 0.17 12.51 H ATOM 140 D22A DG A 4 11.823 -14.757 -6.302 0.60 13.51 D ATOM 141 H22B DG A 4 11.823 -14.757 -6.302 0.40 13.51 H HETATM 142 P CSL A 5 10.936 -13.883 2.217 1.00 28.30 P HETATM 143 O2P CSL A 5 10.431 -12.506 1.949 1.00 27.25 O HETATM 144 O1P CSL A 5 11.527 -14.226 3.534 1.00 29.80 O HETATM 145 O5' CSL A 5 12.122 -14.001 1.158 1.00 24.69 O HETATM 146 C5' CSL A 5 12.941 -15.140 1.088 1.00 20.20 C HETATM 147 C4' CSL A 5 13.688 -15.162 -0.198 1.00 19.15 C HETATM 148 O4' CSL A 5 12.792 -14.998 -1.322 1.00 17.39 O HETATM 149 C1' CSL A 5 13.470 -14.325 -2.375 1.00 14.17 C HETATM 150 N1 CSL A 5 12.752 -13.079 -2.669 1.00 14.78 N HETATM 151 C2 CSL A 5 13.104 -12.401 -3.851 1.00 13.85 C HETATM 152 O2 CSL A 5 13.996 -12.859 -4.586 1.00 13.98 O HETATM 153 N3 CSL A 5 12.431 -11.240 -4.150 1.00 13.61 N HETATM 154 C4 CSL A 5 11.478 -10.778 -3.349 1.00 14.62 C HETATM 155 N4 CSL A 5 10.858 -9.656 -3.701 1.00 17.91 N HETATM 156 C5 CSL A 5 11.106 -11.441 -2.144 1.00 16.26 C HETATM 157 C6 CSL A 5 11.761 -12.573 -1.847 1.00 14.04 C HETATM 158 C2' CSL A 5 14.856 -14.093 -1.908 1.00 16.97 C HETATM 159 SE2' CSL A 5 15.947 -15.614 -2.467 1.00 8.69 SE HETATM 160 CA' CSL A 5 16.218 -15.316 -4.343 1.00 17.90 C HETATM 161 C3' CSL A 5 14.693 -14.045 -0.414 1.00 17.28 C HETATM 162 O3' CSL A 5 15.877 -14.295 0.301 1.00 19.54 O HETATM 163 H5'1 CSL A 5 12.293 -16.019 1.123 1.00 20.52 H HETATM 164 H5'2 CSL A 5 13.636 -15.156 1.929 1.00 20.63 H HETATM 165 H4' CSL A 5 14.205 -16.116 -0.135 1.00 17.64 H HETATM 166 H1' CSL A 5 13.507 -14.900 -3.308 1.00 14.28 H HETATM 167 DN41 CSL A 5 10.000 -9.395 -3.221 1.00 19.04 D HETATM 168 DN42 CSL A 5 11.232 -9.070 -4.448 1.00 18.82 D HETATM 169 H5 CSL A 5 10.327 -11.050 -1.494 1.00 13.80 H HETATM 170 H6 CSL A 5 11.507 -13.111 -0.930 1.00 15.35 H HETATM 171 H2' CSL A 5 15.343 -13.205 -2.292 1.00 14.08 H HETATM 172 HA'1 CSL A 5 17.056 -15.916 -4.692 1.00 12.49 H HETATM 173 HA'2 CSL A 5 16.454 -14.261 -4.502 1.00 13.82 H HETATM 174 HA'3 CSL A 5 15.318 -15.587 -4.886 1.00 12.67 H HETATM 175 H3' CSL A 5 14.367 -13.072 -0.052 1.00 19.82 H ATOM 176 P DC A 6 16.744 -13.059 0.846 1.00 18.95 P ATOM 177 OP1 DC A 6 17.711 -13.771 1.720 1.00 23.41 O ATOM 178 OP2 DC A 6 15.894 -11.972 1.409 1.00 21.25 O ATOM 179 O5' DC A 6 17.531 -12.466 -0.405 1.00 19.47 O ATOM 180 C5' DC A 6 18.570 -13.210 -1.057 1.00 19.21 C ATOM 181 C4' DC A 6 19.042 -12.477 -2.295 1.00 18.82 C ATOM 182 O4' DC A 6 17.987 -12.372 -3.285 1.00 17.60 O ATOM 183 C3' DC A 6 19.483 -11.033 -2.073 1.00 18.28 C ATOM 184 O3' DC A 6 20.799 -11.034 -1.508 1.00 20.14 O ATOM 185 C2' DC A 6 19.429 -10.497 -3.493 1.00 17.18 C ATOM 186 C1' DC A 6 18.113 -11.124 -3.981 1.00 16.83 C ATOM 187 N1 DC A 6 16.892 -10.298 -3.707 1.00 14.06 N ATOM 188 C2 DC A 6 16.563 -9.263 -4.604 1.00 14.06 C ATOM 189 O2 DC A 6 17.316 -9.035 -5.570 1.00 15.65 O ATOM 190 N3 DC A 6 15.440 -8.525 -4.393 1.00 12.41 N ATOM 191 C4 DC A 6 14.669 -8.774 -3.338 1.00 10.97 C ATOM 192 N4 DC A 6 13.550 -8.056 -3.193 1.00 12.49 N ATOM 193 C5 DC A 6 14.996 -9.790 -2.387 1.00 12.64 C ATOM 194 C6 DC A 6 16.097 -10.530 -2.616 1.00 12.62 C ATOM 195 H5' DC A 6 18.198 -14.190 -1.347 1.00 19.27 H ATOM 196 H5'' DC A 6 19.415 -13.339 -0.377 1.00 21.06 H ATOM 197 H4' DC A 6 19.921 -13.013 -2.665 1.00 18.06 H ATOM 198 H3' DC A 6 18.796 -10.502 -1.404 1.00 18.37 H ATOM 199 H2' DC A 6 19.403 -9.410 -3.513 1.00 15.86 H ATOM 200 H2'' DC A 6 20.313 -10.799 -4.064 1.00 15.95 H ATOM 201 H1' DC A 6 18.154 -11.346 -5.051 1.00 16.13 H ATOM 202 D41A DC A 6 12.969 -8.265 -2.405 0.64 11.51 D ATOM 203 H41B DC A 6 12.969 -8.265 -2.405 0.36 11.51 H ATOM 204 D42A DC A 6 13.254 -7.311 -3.794 0.88 9.59 D ATOM 205 H42B DC A 6 13.254 -7.311 -3.794 0.12 9.59 H ATOM 206 H5 DC A 6 14.390 -9.938 -1.489 1.00 11.37 H ATOM 207 H6 DC A 6 16.354 -11.330 -1.920 1.00 13.47 H ATOM 208 P DA A 7 21.325 -9.773 -0.657 1.00 21.25 P ATOM 209 OP1 DA A 7 22.729 -10.129 -0.282 1.00 24.88 O ATOM 210 OP2 DA A 7 20.365 -9.461 0.414 1.00 21.95 O ATOM 211 O5' DA A 7 21.371 -8.598 -1.730 1.00 18.66 O ATOM 212 C5' DA A 7 22.413 -8.545 -2.716 1.00 19.04 C ATOM 213 C4' DA A 7 22.141 -7.435 -3.706 1.00 17.77 C ATOM 214 O4' DA A 7 20.808 -7.582 -4.252 1.00 18.07 O ATOM 215 C3' DA A 7 22.150 -6.022 -3.129 1.00 19.00 C ATOM 216 O3' DA A 7 23.498 -5.518 -3.069 1.00 18.59 O ATOM 217 C2' DA A 7 21.314 -5.253 -4.140 1.00 17.51 C ATOM 218 C1' DA A 7 20.264 -6.289 -4.543 1.00 17.34 C ATOM 219 N9 DA A 7 18.993 -6.149 -3.823 1.00 17.04 N ATOM 220 C8 DA A 7 18.516 -6.840 -2.724 1.00 15.09 C ATOM 221 N7 DA A 7 17.300 -6.488 -2.372 1.00 13.14 N ATOM 222 C5 DA A 7 16.971 -5.476 -3.270 1.00 14.61 C ATOM 223 C6 DA A 7 15.828 -4.687 -3.430 1.00 14.42 C ATOM 224 N6 DA A 7 14.745 -4.797 -2.672 1.00 13.77 N ATOM 225 N1 DA A 7 15.828 -3.767 -4.427 1.00 14.01 N ATOM 226 C2 DA A 7 16.907 -3.667 -5.199 1.00 14.66 C ATOM 227 N3 DA A 7 18.036 -4.355 -5.151 1.00 14.29 N ATOM 228 C4 DA A 7 18.003 -5.256 -4.159 1.00 15.47 C ATOM 229 DOP2A DA A 7 19.847 -8.731 0.032 0.79 22.75 D ATOM 230 HOP2B DA A 7 19.847 -8.731 0.032 0.21 22.75 H ATOM 231 H5' DA A 7 22.465 -9.497 -3.250 1.00 17.63 H ATOM 232 H5'' DA A 7 23.370 -8.359 -2.221 1.00 18.60 H ATOM 233 H4' DA A 7 22.926 -7.466 -4.470 1.00 18.30 H ATOM 234 H3' DA A 7 21.706 -6.003 -2.131 1.00 17.97 H ATOM 235 H2' DA A 7 20.870 -4.364 -3.693 1.00 18.28 H ATOM 236 H2'' DA A 7 21.930 -4.909 -4.976 1.00 16.30 H ATOM 237 H1' DA A 7 20.066 -6.255 -5.619 1.00 17.98 H ATOM 238 H8 DA A 7 19.099 -7.577 -2.183 1.00 16.21 H ATOM 239 D61A DA A 7 14.740 -5.486 -1.942 0.67 12.16 D ATOM 240 H61B DA A 7 14.740 -5.486 -1.942 0.33 12.16 H ATOM 241 D62A DA A 7 13.953 -4.186 -2.850 0.89 13.67 D ATOM 242 H62B DA A 7 13.953 -4.186 -2.850 0.11 13.67 H ATOM 243 H2 DA A 7 16.858 -2.912 -5.981 1.00 11.67 H ATOM 244 P DC A 8 23.930 -4.504 -1.889 1.00 21.66 P ATOM 245 OP1 DC A 8 25.399 -4.309 -1.982 1.00 22.94 O ATOM 246 OP2 DC A 8 23.343 -4.965 -0.607 1.00 22.91 O ATOM 247 O5' DC A 8 23.238 -3.126 -2.291 1.00 21.63 O ATOM 248 C5' DC A 8 23.680 -2.399 -3.439 1.00 23.31 C ATOM 249 C4' DC A 8 22.711 -1.283 -3.752 1.00 24.77 C ATOM 250 O4' DC A 8 21.392 -1.852 -3.824 1.00 25.65 O ATOM 251 C3' DC A 8 22.613 -0.174 -2.702 1.00 27.61 C ATOM 252 O3' DC A 8 23.493 0.893 -3.072 1.00 29.35 O ATOM 253 C2' DC A 8 21.161 0.279 -2.770 1.00 25.78 C ATOM 254 C1' DC A 8 20.423 -0.883 -3.440 1.00 25.18 C ATOM 255 N1 DC A 8 19.423 -1.551 -2.574 1.00 21.97 N ATOM 256 C2 DC A 8 18.088 -1.132 -2.662 1.00 19.49 C ATOM 257 O2 DC A 8 17.808 -0.190 -3.414 1.00 20.28 O ATOM 258 N3 DC A 8 17.150 -1.752 -1.925 1.00 18.31 N ATOM 259 C4 DC A 8 17.493 -2.746 -1.114 1.00 18.57 C ATOM 260 N4 DC A 8 16.535 -3.334 -0.432 1.00 18.99 N ATOM 261 C5 DC A 8 18.850 -3.183 -0.976 1.00 18.77 C ATOM 262 C6 DC A 8 19.773 -2.557 -1.716 1.00 18.48 C ATOM 263 H5' DC A 8 23.738 -3.072 -4.296 1.00 22.24 H ATOM 264 H5'' DC A 8 24.672 -1.981 -3.250 1.00 23.39 H ATOM 265 H4' DC A 8 23.029 -0.810 -4.687 1.00 25.86 H ATOM 266 H3' DC A 8 22.886 -0.535 -1.711 1.00 26.85 H ATOM 267 DO3'A DC A 8 23.198 1.690 -2.621 0.73 28.78 D ATOM 268 HO3'B DC A 8 23.198 1.690 -2.621 0.27 28.78 H ATOM 269 H2' DC A 8 20.767 0.497 -1.773 1.00 26.09 H ATOM 270 H2'' DC A 8 21.071 1.199 -3.352 1.00 26.78 H ATOM 271 H1' DC A 8 19.918 -0.551 -4.350 1.00 23.86 H ATOM 272 D41A DC A 8 15.577 -3.030 -0.538 0.61 18.95 D ATOM 273 H41B DC A 8 15.577 -3.030 -0.538 0.39 18.95 H ATOM 274 D42 DC A 8 16.794 -4.097 0.184 1.00 21.96 D ATOM 275 H5 DC A 8 19.118 -4.000 -0.303 1.00 18.78 H ATOM 276 H6 DC A 8 20.820 -2.851 -1.622 1.00 19.72 H TER 277 DC A 8 HETATM 278 MG MG A 101 5.394 -9.089 -4.918 0.50 34.29 MG HETATM 279 O DOD A 201 -0.463 -7.005 -13.236 1.00 59.00 O HETATM 280 D1 DOD A 201 -0.287 -7.731 -13.833 1.00 59.60 D HETATM 281 D2 DOD A 201 -0.713 -6.279 -13.807 1.00 59.49 D HETATM 282 O DOD A 202 4.069 -12.465 -12.460 1.00 60.98 O HETATM 283 D1 DOD A 202 4.865 -12.977 -12.311 1.00 61.61 D HETATM 284 D2 DOD A 202 3.373 -12.979 -12.051 1.00 61.69 D HETATM 285 O DOD A 203 6.310 -10.567 -6.521 1.00 69.07 O HETATM 286 D1 DOD A 203 5.989 -11.461 -6.641 1.00 69.48 D HETATM 287 D2 DOD A 203 6.513 -10.265 -7.407 1.00 68.82 D HETATM 288 O DOD A 204 0.102 -6.077 -9.012 1.00 49.03 O HETATM 289 D1 DOD A 204 -0.140 -6.555 -8.219 1.00 50.53 D HETATM 290 D2 DOD A 204 -0.418 -6.485 -9.706 1.00 49.95 D HETATM 291 O DOD A 205 2.040 -9.858 -13.329 1.00 38.85 O HETATM 292 D1 DOD A 205 2.612 -9.743 -14.088 1.00 39.47 D HETATM 293 D2 DOD A 205 2.380 -10.637 -12.889 1.00 38.51 D HETATM 294 O DOD A 206 16.031 -7.188 -0.068 1.00 42.67 O HETATM 295 D1 DOD A 206 16.507 -6.899 -0.846 1.00 44.01 D HETATM 296 D2 DOD A 206 16.603 -7.840 0.336 1.00 44.02 D HETATM 297 O DOD A 207 26.694 -4.266 -4.389 1.00 41.34 O HETATM 298 D1 DOD A 207 27.207 -3.489 -4.157 1.00 41.95 D HETATM 299 D2 DOD A 207 26.651 -4.773 -3.579 1.00 42.99 D HETATM 300 O DOD A 208 19.904 -3.004 -6.691 1.00 51.11 O HETATM 301 D1 DOD A 208 19.715 -2.118 -6.381 1.00 51.17 D HETATM 302 D2 DOD A 208 19.303 -3.564 -6.199 1.00 52.33 D HETATM 303 O DOD A 209 3.825 -9.987 -5.587 1.00 41.49 O HETATM 304 D1 DOD A 209 3.029 -9.589 -5.235 1.00 42.94 D HETATM 305 D2 DOD A 209 3.799 -10.892 -5.276 1.00 42.06 D HETATM 306 O DOD A 210 5.068 -10.459 -9.521 0.50 34.57 O HETATM 307 D1 DOD A 210 5.021 -11.394 -9.321 0.50 34.23 D HETATM 308 D2 DOD A 210 4.869 -10.027 -8.691 0.50 33.71 D HETATM 309 O DOD A 211 -3.693 -16.146 -7.693 1.00 58.60 O HETATM 310 D1 DOD A 211 -3.758 -17.035 -7.343 1.00 59.24 D HETATM 311 D2 DOD A 211 -4.372 -16.104 -8.366 1.00 58.88 D HETATM 312 O DOD A 212 -3.090 -4.429 -5.928 1.00 59.16 O HETATM 313 D1 DOD A 212 -2.949 -5.359 -5.748 1.00 59.44 D HETATM 314 D2 DOD A 212 -3.323 -4.053 -5.079 1.00 58.47 D HETATM 315 O DOD A 213 5.871 -10.091 -3.066 1.00 52.99 O HETATM 316 D1 DOD A 213 6.068 -11.025 -3.141 1.00 52.92 D HETATM 317 D2 DOD A 213 6.697 -9.694 -2.790 1.00 53.35 D HETATM 318 O DOD A 214 21.060 -4.930 1.203 0.50 32.75 O HETATM 319 D1 DOD A 214 21.023 -4.771 2.146 0.50 33.41 D HETATM 320 D2 DOD A 214 21.468 -4.142 0.843 0.50 32.88 D HETATM 321 O DOD A 215 13.492 -10.268 1.239 1.00 52.94 O HETATM 322 D1 DOD A 215 12.704 -10.687 1.586 1.00 52.26 D HETATM 323 D2 DOD A 215 13.283 -10.084 0.323 1.00 53.37 D HETATM 324 O DOD A 216 1.497 -8.595 -4.764 1.00 42.72 O HETATM 325 D1 DOD A 216 1.287 -8.488 -3.836 1.00 43.82 D HETATM 326 D2 DOD A 216 0.693 -8.351 -5.222 1.00 43.66 D HETATM 327 O DOD A 217 18.147 0.501 -6.316 1.00 61.62 O HETATM 328 D1 DOD A 217 18.417 0.150 -5.468 1.00 61.92 D HETATM 329 D2 DOD A 217 18.047 1.440 -6.165 1.00 61.36 D HETATM 330 O DOD A 218 11.944 -7.937 -0.656 1.00 47.98 O HETATM 331 D1 DOD A 218 11.986 -8.893 -0.621 1.00 48.19 D HETATM 332 D2 DOD A 218 11.009 -7.737 -0.598 1.00 48.01 D HETATM 333 O DOD A 219 17.369 -9.292 1.200 1.00 41.78 O HETATM 334 D1 DOD A 219 16.852 -9.830 1.799 1.00 42.90 D HETATM 335 D2 DOD A 219 18.276 -9.539 1.378 1.00 41.29 D HETATM 336 O DOD A 220 3.835 -9.570 -1.668 0.50 25.63 O HETATM 337 D1 DOD A 220 3.091 -9.651 -2.265 0.50 26.05 D HETATM 338 D2 DOD A 220 4.558 -9.999 -2.126 0.50 25.25 D HETATM 339 O DOD A 221 0.977 -10.062 2.767 1.00 53.04 O HETATM 340 D1 DOD A 221 0.943 -10.200 1.819 1.00 52.21 D HETATM 341 D2 DOD A 221 0.316 -10.657 3.119 1.00 53.01 D HETATM 342 O DOD A 222 -0.037 -17.064 -3.686 1.00 60.04 O HETATM 343 D1 DOD A 222 0.401 -17.556 -4.379 1.00 59.46 D HETATM 344 D2 DOD A 222 0.187 -16.149 -3.862 1.00 60.33 D HETATM 345 O DOD A 223 7.520 -8.502 -5.316 0.50 47.20 O HETATM 346 D1 DOD A 223 7.596 -8.923 -6.173 0.50 47.33 D HETATM 347 D2 DOD A 223 8.299 -7.950 -5.250 0.50 47.44 D HETATM 348 O DOD A 224 13.760 -6.480 -0.024 1.00 56.83 O HETATM 349 D1 DOD A 224 13.265 -7.300 -0.021 1.00 57.30 D HETATM 350 D2 DOD A 224 14.664 -6.744 0.151 1.00 57.32 D HETATM 351 O DOD A 225 19.053 -6.262 0.803 1.00 60.06 O HETATM 352 D1 DOD A 225 19.513 -5.423 0.859 1.00 60.57 D HETATM 353 D2 DOD A 225 19.616 -6.877 1.274 1.00 59.85 D HETATM 354 O DOD A 226 8.675 -7.245 -2.161 0.50 38.07 O HETATM 355 D1 DOD A 226 8.186 -8.062 -2.248 0.50 37.37 D HETATM 356 D2 DOD A 226 8.248 -6.643 -2.772 0.50 37.49 D HETATM 357 O DOD A 227 3.538 -9.134 -11.558 1.00 56.28 O HETATM 358 D1 DOD A 227 2.832 -9.196 -12.201 1.00 55.78 D HETATM 359 D2 DOD A 227 3.402 -8.287 -11.134 1.00 56.15 D HETATM 360 O DOD A 228 4.563 -7.570 -3.408 0.50 21.64 O HETATM 361 D1 DOD A 228 3.844 -7.134 -3.864 0.50 19.75 D HETATM 362 D2 DOD A 228 4.150 -7.987 -2.651 0.50 19.53 D HETATM 363 O DOD A 229 4.899 -7.660 -6.720 1.00 90.11 O HETATM 364 D1 DOD A 229 5.177 -8.052 -7.548 1.00 90.08 D HETATM 365 D2 DOD A 229 4.794 -6.729 -6.917 1.00 90.31 D CONECT 114 142 CONECT 142 114 143 144 145 CONECT 143 142 CONECT 144 142 CONECT 145 142 146 CONECT 146 145 147 163 164 CONECT 147 146 148 161 165 CONECT 148 147 149 CONECT 149 148 150 158 166 CONECT 150 149 151 157 CONECT 151 150 152 153 CONECT 152 151 CONECT 153 151 154 CONECT 154 153 155 156 CONECT 155 154 CONECT 156 154 157 169 CONECT 157 150 156 170 CONECT 158 149 159 161 171 CONECT 159 158 160 CONECT 160 159 172 173 174 CONECT 161 147 158 162 175 CONECT 162 161 176 CONECT 163 146 CONECT 164 146 CONECT 165 147 CONECT 166 149 CONECT 169 156 CONECT 170 157 CONECT 171 158 CONECT 172 160 CONECT 173 160 CONECT 174 160 CONECT 175 161 CONECT 176 162 CONECT 278 285 303 315 345 CONECT 278 360 363 CONECT 285 278 CONECT 303 278 CONECT 315 278 CONECT 345 278 CONECT 360 278 CONECT 363 278 MASTER 384 0 2 0 0 0 2 6 193 1 42 1 END