0.021474
0.000000
0.000000
0.000000
0.014460
0.000000
0.000000
0.000000
0.007048
0.00000
0.00000
0.00000
Chan, K.-W.
Kong, X.-P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.568
69.157
141.887
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-D-fucopyranose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J. Virol.
JOVIAM
0825
1098-5514
92
10.1128/JVI.00641-18
29997214
Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.
2018
100
1
PIXEL
2017-11-28
DECTRIS EIGER X 9M
SINGLE WAVELENGTH
M
x-ray
1
0.92010
1.0
17-ID-1
NSLS-II
0.92010
SYNCHROTRON
NSLS-II BEAMLINE 17-ID-1
24539.348
Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain
1
man
polymer
22936.291
Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain
1
man
polymer
2711.196
HIV-1 gp120 V3 peptide from MN strain
1
syn
polymer
894.823
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
348
nat
water
no
no
QVQLVQSGAEVKKPGASVKISCKASGYNFTTYAMHWVRQAPGQGLEWMGWINGGNGDTRYSQKFRGRVTISRDTSASTAY
MELHSLTSEDTALFYCARESGDYYSEISGALDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
QVQLVQSGAEVKKPGASVKISCKASGYNFTTYAMHWVRQAPGQGLEWMGWINGGNGDTRYSQKFRGRVTISRDTSASTAY
MELHSLTSEDTALFYCARESGDYYSEISGALDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
H
polypeptide(L)
no
no
SYELTQPPSVSVSPGQTARITCSGDVLPKKYAYWYQQKSGLAPVLVIYEDNRRPSGIPERFSGSSSGTMATLTISGAQVE
DEGDYYCSSTDSSGDHYVFGTGTKVTVLGQPKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG
VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
SYELTQPPSVSVSPGQTARITCSGDVLPKKYAYWYQQKSGLAPVLVIYEDNRRPSGIPERFSGSSSGTMATLTISGAQVE
DEGDYYCSSTDSSGDHYVFGTGTKVTVLGQPKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG
VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
L
polypeptide(L)
no
no
YNKRKRIHIGPGRAFYTTKNIIG
YNKRKRIHIGPGRAFYTTKNIIG
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
human
sample
1
230
9606
Homo sapiens
9606
Homo sapiens
Biological sequence
Human
human
sample
1
214
9606
Homo sapiens
9606
Homo sapiens
Biological sequence
1
2.31
46.75
VAPOR DIFFUSION, HANGING DROP
0.1 M Imidazole pH 6.5, 15% PEG 8000,
30% Isopropanol
292
citation
citation_author
citation
pdbx_audit_support
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Data collection
Database references
Data collection
Database references
Author supporting evidence
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2018-07-11
1
1
2018-07-25
1
2
2018-09-12
1
3
2019-12-18
2
0
2020-07-29
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation_author.name
_citation.journal_volume
_citation.title
_pdbx_audit_support.funding_organization
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI100151
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI082676
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI082274
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI087191
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI112546
H
NAG
301
n
A
NAG
1
H
NAG
303
n
A
NAG
2
H
BMA
304
n
A
BMA
3
H
MAN
305
n
A
MAN
4
H
FCA
302
n
A
FCA
5
DManpb
b-D-mannopyranose
b-D-Manp
Man
DFucpa
a-D-fucopyranose
a-D-Fucp
Fuc
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
N
RCSB
Y
RCSB
2018-05-02
REL
REL
oligosaccharide
DManpa1-6DManpb1-4DGlcpNAcb1-4[DFucpa1-6]DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/4,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112m-1a_1-5]/1-1-2-3-4/a4-b1_a6-e1_b4-c1_c6-d1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}[(6+1)][a-D-Fucp]{}}}
4
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
4
O1
HO4
sing
C1
O4
BMA
NAG
3
2
4
O1
HO4
sing
C1
O6
MAN
BMA
4
3
4
O1
HO6
sing
C1
O6
FCA
NAG
5
1
4
O1
HO6
sing
n
n
n
n
n
HOH
water
11676
Human immunodeficiency virus 1
sample
1
23
HOH
21
5
HOH
HOH
401
H
HOH
385
5
HOH
HOH
402
H
HOH
185
5
HOH
HOH
403
H
HOH
160
5
HOH
HOH
404
H
HOH
175
5
HOH
HOH
405
H
HOH
410
5
HOH
HOH
406
H
HOH
155
5
HOH
HOH
407
H
HOH
163
5
HOH
HOH
408
H
HOH
210
5
HOH
HOH
409
H
HOH
404
5
HOH
HOH
410
H
HOH
47
5
HOH
HOH
411
H
HOH
95
5
HOH
HOH
412
H
HOH
553
5
HOH
HOH
413
H
HOH
191
5
HOH
HOH
414
H
HOH
73
5
HOH
HOH
415
H
HOH
497
5
HOH
HOH
416
H
HOH
104
5
HOH
HOH
417
H
HOH
162
5
HOH
HOH
418
H
HOH
313
5
HOH
HOH
419
H
HOH
112
5
HOH
HOH
420
H
HOH
544
5
HOH
HOH
421
H
HOH
331
5
HOH
HOH
422
H
HOH
150
5
HOH
HOH
423
H
HOH
40
5
HOH
HOH
424
H
HOH
245
5
HOH
HOH
425
H
HOH
8
5
HOH
HOH
426
H
HOH
359
5
HOH
HOH
427
H
HOH
140
5
HOH
HOH
428
H
HOH
179
5
HOH
HOH
429
H
HOH
102
5
HOH
HOH
430
H
HOH
32
5
HOH
HOH
431
H
HOH
265
5
HOH
HOH
432
H
HOH
81
5
HOH
HOH
433
H
HOH
229
5
HOH
HOH
434
H
HOH
269
5
HOH
HOH
435
H
HOH
106
5
HOH
HOH
436
H
HOH
247
5
HOH
HOH
437
H
HOH
159
5
HOH
HOH
438
H
HOH
146
5
HOH
HOH
439
H
HOH
12
5
HOH
HOH
440
H
HOH
387
5
HOH
HOH
441
H
HOH
49
5
HOH
HOH
442
H
HOH
198
5
HOH
HOH
443
H
HOH
233
5
HOH
HOH
444
H
HOH
31
5
HOH
HOH
445
H
HOH
220
5
HOH
HOH
446
H
HOH
91
5
HOH
HOH
447
H
HOH
547
5
HOH
HOH
448
H
HOH
277
5
HOH
HOH
449
H
HOH
20
5
HOH
HOH
450
H
HOH
4
5
HOH
HOH
451
H
HOH
230
5
HOH
HOH
452
H
HOH
126
5
HOH
HOH
453
H
HOH
68
5
HOH
HOH
454
H
HOH
33
5
HOH
HOH
455
H
HOH
65
5
HOH
HOH
456
H
HOH
127
5
HOH
HOH
457
H
HOH
172
5
HOH
HOH
458
H
HOH
178
5
HOH
HOH
459
H
HOH
83
5
HOH
HOH
460
H
HOH
121
5
HOH
HOH
461
H
HOH
42
5
HOH
HOH
462
H
HOH
77
5
HOH
HOH
463
H
HOH
55
5
HOH
HOH
464
H
HOH
71
5
HOH
HOH
465
H
HOH
99
5
HOH
HOH
466
H
HOH
318
5
HOH
HOH
467
H
HOH
254
5
HOH
HOH
468
H
HOH
188
5
HOH
HOH
469
H
HOH
53
5
HOH
HOH
470
H
HOH
89
5
HOH
HOH
471
H
HOH
124
5
HOH
HOH
472
H
HOH
436
5
HOH
HOH
473
H
HOH
244
5
HOH
HOH
474
H
HOH
302
5
HOH
HOH
475
H
HOH
63
5
HOH
HOH
476
H
HOH
111
5
HOH
HOH
477
H
HOH
341
5
HOH
HOH
478
H
HOH
138
5
HOH
HOH
479
H
HOH
45
5
HOH
HOH
480
H
HOH
54
5
HOH
HOH
481
H
HOH
101
5
HOH
HOH
482
H
HOH
419
5
HOH
HOH
483
H
HOH
50
5
HOH
HOH
484
H
HOH
96
5
HOH
HOH
485
H
HOH
94
5
HOH
HOH
486
H
HOH
131
5
HOH
HOH
487
H
HOH
109
5
HOH
HOH
488
H
HOH
51
5
HOH
HOH
489
H
HOH
90
5
HOH
HOH
490
H
HOH
202
5
HOH
HOH
491
H
HOH
125
5
HOH
HOH
492
H
HOH
46
5
HOH
HOH
493
H
HOH
484
5
HOH
HOH
494
H
HOH
398
5
HOH
HOH
495
H
HOH
173
5
HOH
HOH
496
H
HOH
180
5
HOH
HOH
497
H
HOH
58
5
HOH
HOH
498
H
HOH
123
5
HOH
HOH
499
H
HOH
82
5
HOH
HOH
500
H
HOH
136
5
HOH
HOH
501
H
HOH
552
5
HOH
HOH
502
H
HOH
519
5
HOH
HOH
503
H
HOH
232
5
HOH
HOH
504
H
HOH
213
5
HOH
HOH
505
H
HOH
219
5
HOH
HOH
506
H
HOH
235
5
HOH
HOH
507
H
HOH
93
5
HOH
HOH
508
H
HOH
110
5
HOH
HOH
509
H
HOH
2
5
HOH
HOH
510
H
HOH
428
5
HOH
HOH
511
H
HOH
147
5
HOH
HOH
512
H
HOH
176
5
HOH
HOH
513
H
HOH
97
5
HOH
HOH
514
H
HOH
24
5
HOH
HOH
515
H
HOH
240
5
HOH
HOH
516
H
HOH
222
5
HOH
HOH
517
H
HOH
151
5
HOH
HOH
518
H
HOH
424
5
HOH
HOH
519
H
HOH
412
5
HOH
HOH
520
H
HOH
6
5
HOH
HOH
521
H
HOH
26
5
HOH
HOH
522
H
HOH
226
5
HOH
HOH
523
H
HOH
92
5
HOH
HOH
524
H
HOH
22
5
HOH
HOH
525
H
HOH
43
5
HOH
HOH
526
H
HOH
78
5
HOH
HOH
527
H
HOH
36
5
HOH
HOH
528
H
HOH
67
5
HOH
HOH
529
H
HOH
70
5
HOH
HOH
530
H
HOH
250
5
HOH
HOH
531
H
HOH
1
5
HOH
HOH
532
H
HOH
29
5
HOH
HOH
533
H
HOH
415
5
HOH
HOH
534
H
HOH
206
5
HOH
HOH
535
H
HOH
5
5
HOH
HOH
536
H
HOH
248
5
HOH
HOH
537
H
HOH
69
5
HOH
HOH
538
H
HOH
262
5
HOH
HOH
539
H
HOH
115
5
HOH
HOH
540
H
HOH
319
5
HOH
HOH
541
H
HOH
485
5
HOH
HOH
542
H
HOH
546
5
HOH
HOH
543
H
HOH
177
5
HOH
HOH
544
H
HOH
258
5
HOH
HOH
545
H
HOH
227
5
HOH
HOH
546
H
HOH
62
5
HOH
HOH
547
H
HOH
430
5
HOH
HOH
548
H
HOH
523
5
HOH
HOH
549
H
HOH
321
5
HOH
HOH
550
H
HOH
18
5
HOH
HOH
551
H
HOH
357
5
HOH
HOH
552
H
HOH
268
5
HOH
HOH
553
H
HOH
416
5
HOH
HOH
554
H
HOH
252
5
HOH
HOH
555
H
HOH
56
5
HOH
HOH
556
H
HOH
317
5
HOH
HOH
557
H
HOH
263
5
HOH
HOH
558
H
HOH
429
5
HOH
HOH
559
H
HOH
264
5
HOH
HOH
560
H
HOH
514
5
HOH
HOH
561
H
HOH
236
5
HOH
HOH
562
H
HOH
472
5
HOH
HOH
563
H
HOH
420
5
HOH
HOH
564
H
HOH
434
5
HOH
HOH
565
H
HOH
486
5
HOH
HOH
566
H
HOH
522
5
HOH
HOH
567
H
HOH
511
5
HOH
HOH
568
H
HOH
525
5
HOH
HOH
569
H
HOH
228
5
HOH
HOH
570
H
HOH
551
5
HOH
HOH
571
H
HOH
272
5
HOH
HOH
572
H
HOH
473
5
HOH
HOH
573
H
HOH
431
5
HOH
HOH
574
H
HOH
303
5
HOH
HOH
575
H
HOH
406
5
HOH
HOH
576
H
HOH
512
5
HOH
HOH
577
H
HOH
383
5
HOH
HOH
578
H
HOH
190
5
HOH
HOH
579
H
HOH
530
5
HOH
HOH
580
H
HOH
545
5
HOH
HOH
581
H
HOH
527
5
HOH
HOH
582
H
HOH
212
5
HOH
HOH
583
H
HOH
476
5
HOH
HOH
584
H
HOH
174
5
HOH
HOH
585
H
HOH
471
5
HOH
HOH
586
H
HOH
351
5
HOH
HOH
587
H
HOH
267
5
HOH
HOH
588
H
HOH
279
5
HOH
HOH
589
H
HOH
48
5
HOH
HOH
590
H
HOH
308
5
HOH
HOH
591
H
HOH
513
5
HOH
HOH
592
H
HOH
166
5
HOH
HOH
301
L
HOH
371
5
HOH
HOH
302
L
HOH
183
5
HOH
HOH
303
L
HOH
203
5
HOH
HOH
304
L
HOH
187
5
HOH
HOH
305
L
HOH
165
5
HOH
HOH
306
L
HOH
132
5
HOH
HOH
307
L
HOH
52
5
HOH
HOH
308
L
HOH
30
5
HOH
HOH
309
L
HOH
294
5
HOH
HOH
310
L
HOH
184
5
HOH
HOH
311
L
HOH
186
5
HOH
HOH
312
L
HOH
108
5
HOH
HOH
313
L
HOH
508
5
HOH
HOH
314
L
HOH
87
5
HOH
HOH
315
L
HOH
14
5
HOH
HOH
316
L
HOH
86
5
HOH
HOH
317
L
HOH
9
5
HOH
HOH
318
L
HOH
57
5
HOH
HOH
319
L
HOH
261
5
HOH
HOH
320
L
HOH
208
5
HOH
HOH
321
L
HOH
170
5
HOH
HOH
322
L
HOH
216
5
HOH
HOH
323
L
HOH
128
5
HOH
HOH
324
L
HOH
11
5
HOH
HOH
325
L
HOH
76
5
HOH
HOH
326
L
HOH
550
5
HOH
HOH
327
L
HOH
107
5
HOH
HOH
328
L
HOH
223
5
HOH
HOH
329
L
HOH
44
5
HOH
HOH
330
L
HOH
84
5
HOH
HOH
331
L
HOH
225
5
HOH
HOH
332
L
HOH
118
5
HOH
HOH
333
L
HOH
66
5
HOH
HOH
334
L
HOH
375
5
HOH
HOH
335
L
HOH
10
5
HOH
HOH
336
L
HOH
35
5
HOH
HOH
337
L
HOH
204
5
HOH
HOH
338
L
HOH
117
5
HOH
HOH
339
L
HOH
25
5
HOH
HOH
340
L
HOH
199
5
HOH
HOH
341
L
HOH
438
5
HOH
HOH
342
L
HOH
41
5
HOH
HOH
343
L
HOH
257
5
HOH
HOH
344
L
HOH
282
5
HOH
HOH
345
L
HOH
105
5
HOH
HOH
346
L
HOH
231
5
HOH
HOH
347
L
HOH
129
5
HOH
HOH
348
L
HOH
15
5
HOH
HOH
349
L
HOH
116
5
HOH
HOH
350
L
HOH
19
5
HOH
HOH
351
L
HOH
207
5
HOH
HOH
352
L
HOH
215
5
HOH
HOH
353
L
HOH
167
5
HOH
HOH
354
L
HOH
120
5
HOH
HOH
355
L
HOH
59
5
HOH
HOH
356
L
HOH
39
5
HOH
HOH
357
L
HOH
134
5
HOH
HOH
358
L
HOH
274
5
HOH
HOH
359
L
HOH
211
5
HOH
HOH
360
L
HOH
114
5
HOH
HOH
361
L
HOH
238
5
HOH
HOH
362
L
HOH
13
5
HOH
HOH
363
L
HOH
467
5
HOH
HOH
364
L
HOH
141
5
HOH
HOH
365
L
HOH
249
5
HOH
HOH
366
L
HOH
143
5
HOH
HOH
367
L
HOH
38
5
HOH
HOH
368
L
HOH
28
5
HOH
HOH
369
L
HOH
27
5
HOH
HOH
370
L
HOH
284
5
HOH
HOH
371
L
HOH
390
5
HOH
HOH
372
L
HOH
60
5
HOH
HOH
373
L
HOH
271
5
HOH
HOH
374
L
HOH
16
5
HOH
HOH
375
L
HOH
300
5
HOH
HOH
376
L
HOH
17
5
HOH
HOH
377
L
HOH
287
5
HOH
HOH
378
L
HOH
330
5
HOH
HOH
379
L
HOH
504
5
HOH
HOH
380
L
HOH
100
5
HOH
HOH
381
L
HOH
72
5
HOH
HOH
382
L
HOH
98
5
HOH
HOH
383
L
HOH
237
5
HOH
HOH
384
L
HOH
316
5
HOH
HOH
385
L
HOH
133
5
HOH
HOH
386
L
HOH
197
5
HOH
HOH
387
L
HOH
182
5
HOH
HOH
388
L
HOH
148
5
HOH
HOH
389
L
HOH
549
5
HOH
HOH
390
L
HOH
255
5
HOH
HOH
391
L
HOH
130
5
HOH
HOH
392
L
HOH
283
5
HOH
HOH
393
L
HOH
61
5
HOH
HOH
394
L
HOH
506
5
HOH
HOH
395
L
HOH
119
5
HOH
HOH
396
L
HOH
301
5
HOH
HOH
397
L
HOH
281
5
HOH
HOH
398
L
HOH
340
5
HOH
HOH
399
L
HOH
80
5
HOH
HOH
400
L
HOH
135
5
HOH
HOH
401
L
HOH
548
5
HOH
HOH
402
L
HOH
88
5
HOH
HOH
403
L
HOH
154
5
HOH
HOH
404
L
HOH
234
5
HOH
HOH
405
L
HOH
64
5
HOH
HOH
406
L
HOH
217
5
HOH
HOH
407
L
HOH
304
5
HOH
HOH
408
L
HOH
152
5
HOH
HOH
409
L
HOH
75
5
HOH
HOH
410
L
HOH
358
5
HOH
HOH
411
L
HOH
449
5
HOH
HOH
412
L
HOH
37
5
HOH
HOH
413
L
HOH
23
5
HOH
HOH
414
L
HOH
156
5
HOH
HOH
415
L
HOH
192
5
HOH
HOH
416
L
HOH
103
5
HOH
HOH
417
L
HOH
490
5
HOH
HOH
418
L
HOH
314
5
HOH
HOH
419
L
HOH
195
5
HOH
HOH
420
L
HOH
3
5
HOH
HOH
421
L
HOH
344
5
HOH
HOH
422
L
HOH
218
5
HOH
HOH
423
L
HOH
461
5
HOH
HOH
424
L
HOH
189
5
HOH
HOH
425
L
HOH
113
5
HOH
HOH
426
L
HOH
85
5
HOH
HOH
427
L
HOH
350
5
HOH
HOH
428
L
HOH
446
5
HOH
HOH
429
L
HOH
34
5
HOH
HOH
430
L
HOH
241
5
HOH
HOH
431
L
HOH
205
5
HOH
HOH
432
L
HOH
122
5
HOH
HOH
433
L
HOH
454
5
HOH
HOH
434
L
HOH
466
5
HOH
HOH
435
L
HOH
539
5
HOH
HOH
436
L
HOH
193
5
HOH
HOH
437
L
HOH
493
5
HOH
HOH
438
L
HOH
296
5
HOH
HOH
439
L
HOH
169
5
HOH
HOH
440
L
HOH
502
5
HOH
HOH
441
L
HOH
201
5
HOH
HOH
442
L
HOH
295
5
HOH
HOH
443
L
HOH
337
5
HOH
HOH
444
L
HOH
242
5
HOH
HOH
445
L
HOH
168
5
HOH
HOH
446
L
HOH
161
5
HOH
HOH
401
P
HOH
74
5
HOH
HOH
402
P
HOH
79
5
HOH
HOH
403
P
HOH
200
5
HOH
HOH
404
P
HOH
181
5
HOH
HOH
405
P
HOH
7
5
HOH
HOH
406
P
HOH
310
5
HOH
HOH
407
P
HOH
440
5
HOH
HOH
408
P
HOH
260
5
HOH
HOH
409
P
HOH
171
5
HOH
HOH
410
P
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
VAL
11
n
11
VAL
11
H
LYS
12
n
12
LYS
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
ASN
28
n
28
ASN
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
THR
31
n
31
THR
31
H
TYR
32
n
32
TYR
32
H
ALA
33
n
33
ALA
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
ALA
40
n
40
ALA
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
MET
48
n
48
MET
48
H
GLY
49
n
49
GLY
49
H
TRP
50
n
50
TRP
50
H
ILE
51
n
51
ILE
51
H
ASN
52
n
52
ASN
52
H
GLY
52
n
53
A
GLY
52
H
GLY
53
n
54
GLY
53
H
ASN
54
n
55
ASN
54
H
GLY
55
n
56
GLY
55
H
ASP
56
n
57
ASP
56
H
THR
57
n
58
THR
57
H
ARG
58
n
59
ARG
58
H
TYR
59
n
60
TYR
59
H
SER
60
n
61
SER
60
H
GLN
61
n
62
GLN
61
H
LYS
62
n
63
LYS
62
H
PHE
63
n
64
PHE
63
H
ARG
64
n
65
ARG
64
H
GLY
65
n
66
GLY
65
H
ARG
66
n
67
ARG
66
H
VAL
67
n
68
VAL
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
SER
70
n
71
SER
70
H
ARG
71
n
72
ARG
71
H
ASP
72
n
73
ASP
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
ALA
75
n
76
ALA
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
MET
80
n
81
MET
80
H
GLU
81
n
82
GLU
81
H
LEU
82
n
83
LEU
82
H
HIS
82
n
84
A
HIS
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
THR
83
n
87
THR
83
H
SER
84
n
88
SER
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
LEU
89
n
93
LEU
89
H
PHE
90
n
94
PHE
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
GLU
95
n
99
GLU
95
H
SER
96
n
100
SER
96
H
GLY
97
n
101
GLY
97
H
ASP
98
n
102
ASP
98
H
TYR
99
n
103
TYR
99
H
TYR
100
n
104
TYR
100
H
SER
100
n
105
A
SER
100
H
GLU
100
n
106
B
GLU
100
H
ILE
100
n
107
C
ILE
100
H
SER
100
n
108
D
SER
100
H
GLY
100
n
109
E
GLY
100
H
ALA
100
n
110
F
ALA
100
H
LEU
101
n
111
LEU
101
H
ASP
102
n
112
ASP
102
H
TRP
103
n
113
TRP
103
H
GLY
104
n
114
GLY
104
H
GLN
105
n
115
GLN
105
H
GLY
106
n
116
GLY
106
H
THR
107
n
117
THR
107
H
LEU
108
n
118
LEU
108
H
VAL
109
n
119
VAL
109
H
THR
110
n
120
THR
110
H
VAL
111
n
121
VAL
111
H
SER
112
n
122
SER
112
H
SER
113
n
123
SER
113
H
ALA
114
n
124
ALA
114
H
SER
115
n
125
SER
115
H
THR
116
n
126
THR
116
H
LYS
117
n
127
LYS
117
H
GLY
118
n
128
GLY
118
H
PRO
119
n
129
PRO
119
H
SER
120
n
130
SER
120
H
VAL
121
n
131
VAL
121
H
PHE
122
n
132
PHE
122
H
PRO
123
n
133
PRO
123
H
LEU
124
n
134
LEU
124
H
ALA
125
n
135
ALA
125
H
PRO
126
n
136
PRO
126
H
SER
127
n
137
SER
127
H
SER
128
n
138
SER
128
H
LYS
129
n
139
LYS
129
H
SER
130
n
140
SER
130
H
THR
131
n
141
THR
131
H
SER
132
n
142
SER
132
H
GLY
133
n
143
GLY
133
H
GLY
134
n
144
GLY
134
H
THR
135
n
145
THR
135
H
ALA
136
n
146
ALA
136
H
ALA
137
n
147
ALA
137
H
LEU
138
n
148
LEU
138
H
GLY
139
n
149
GLY
139
H
CYS
140
n
150
CYS
140
H
LEU
141
n
151
LEU
141
H
VAL
142
n
152
VAL
142
H
LYS
143
n
153
LYS
143
H
ASP
144
n
154
ASP
144
H
TYR
145
n
155
TYR
145
H
PHE
146
n
156
PHE
146
H
PRO
147
n
157
PRO
147
H
GLU
148
n
158
GLU
148
H
PRO
149
n
159
PRO
149
H
VAL
150
n
160
VAL
150
H
THR
151
n
161
THR
151
H
VAL
152
n
162
VAL
152
H
SER
153
n
163
SER
153
H
TRP
154
n
164
TRP
154
H
ASN
155
n
165
ASN
155
H
SER
156
n
166
SER
156
H
GLY
157
n
167
GLY
157
H
ALA
158
n
168
ALA
158
H
LEU
159
n
169
LEU
159
H
THR
160
n
170
THR
160
H
SER
161
n
171
SER
161
H
GLY
162
n
172
GLY
162
H
VAL
163
n
173
VAL
163
H
HIS
164
n
174
HIS
164
H
THR
165
n
175
THR
165
H
PHE
166
n
176
PHE
166
H
PRO
167
n
177
PRO
167
H
ALA
168
n
178
ALA
168
H
VAL
169
n
179
VAL
169
H
LEU
170
n
180
LEU
170
H
GLN
171
n
181
GLN
171
H
SER
172
n
182
SER
172
H
SER
173
n
183
SER
173
H
GLY
174
n
184
GLY
174
H
LEU
175
n
185
LEU
175
H
TYR
176
n
186
TYR
176
H
SER
177
n
187
SER
177
H
LEU
178
n
188
LEU
178
H
SER
179
n
189
SER
179
H
SER
180
n
190
SER
180
H
VAL
181
n
191
VAL
181
H
VAL
182
n
192
VAL
182
H
THR
183
n
193
THR
183
H
VAL
184
n
194
VAL
184
H
PRO
185
n
195
PRO
185
H
SER
186
n
196
SER
186
H
SER
187
n
197
SER
187
H
SER
188
n
198
SER
188
H
LEU
189
n
199
LEU
189
H
GLY
190
n
200
GLY
190
H
THR
191
n
201
THR
191
H
GLN
192
n
202
GLN
192
H
THR
193
n
203
THR
193
H
TYR
194
n
204
TYR
194
H
ILE
195
n
205
ILE
195
H
CYS
196
n
206
CYS
196
H
ASN
197
n
207
ASN
197
H
VAL
198
n
208
VAL
198
H
ASN
199
n
209
ASN
199
H
HIS
200
n
210
HIS
200
H
LYS
201
n
211
LYS
201
H
PRO
202
n
212
PRO
202
H
SER
203
n
213
SER
203
H
ASN
204
n
214
ASN
204
H
THR
205
n
215
THR
205
H
LYS
206
n
216
LYS
206
H
VAL
207
n
217
VAL
207
H
ASP
208
n
218
ASP
208
H
LYS
209
n
219
LYS
209
H
ARG
210
n
220
ARG
210
H
VAL
211
n
221
VAL
211
H
GLU
212
n
222
GLU
212
H
PRO
213
n
223
PRO
213
H
LYS
214
n
224
LYS
214
H
SER
215
n
225
SER
215
H
CYS
216
n
226
CYS
216
H
n
227
217
H
n
228
218
H
n
229
219
H
n
230
220
H
n
1
1
L
TYR
2
n
2
TYR
2
L
GLU
3
n
3
GLU
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
PRO
7
n
7
PRO
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
VAL
11
n
10
VAL
11
L
SER
12
n
11
SER
12
L
VAL
13
n
12
VAL
13
L
SER
14
n
13
SER
14
L
PRO
15
n
14
PRO
15
L
GLY
16
n
15
GLY
16
L
GLN
17
n
16
GLN
17
L
THR
18
n
17
THR
18
L
ALA
19
n
18
ALA
19
L
ARG
20
n
19
ARG
20
L
ILE
21
n
20
ILE
21
L
THR
22
n
21
THR
22
L
CYS
23
n
22
CYS
23
L
SER
24
n
23
SER
24
L
GLY
25
n
24
GLY
25
L
ASP
26
n
25
ASP
26
L
VAL
27
n
26
VAL
27
L
LEU
28
n
27
LEU
28
L
PRO
29
n
28
PRO
29
L
LYS
30
n
29
LYS
30
L
LYS
31
n
30
LYS
31
L
TYR
32
n
31
TYR
32
L
ALA
33
n
32
ALA
33
L
TYR
34
n
33
TYR
34
L
TRP
35
n
34
TRP
35
L
TYR
36
n
35
TYR
36
L
GLN
37
n
36
GLN
37
L
GLN
38
n
37
GLN
38
L
LYS
39
n
38
LYS
39
L
SER
40
n
39
SER
40
L
GLY
41
n
40
GLY
41
L
LEU
42
n
41
LEU
42
L
ALA
43
n
42
ALA
43
L
PRO
44
n
43
PRO
44
L
VAL
45
n
44
VAL
45
L
LEU
46
n
45
LEU
46
L
VAL
47
n
46
VAL
47
L
ILE
48
n
47
ILE
48
L
TYR
49
n
48
TYR
49
L
GLU
50
n
49
GLU
50
L
ASP
51
n
50
ASP
51
L
ASN
52
n
51
ASN
52
L
ARG
53
n
52
ARG
53
L
ARG
54
n
53
ARG
54
L
PRO
55
n
54
PRO
55
L
SER
56
n
55
SER
56
L
GLY
57
n
56
GLY
57
L
ILE
58
n
57
ILE
58
L
PRO
59
n
58
PRO
59
L
GLU
60
n
59
GLU
60
L
ARG
61
n
60
ARG
61
L
PHE
62
n
61
PHE
62
L
SER
63
n
62
SER
63
L
GLY
64
n
63
GLY
64
L
SER
65
n
64
SER
65
L
SER
66
n
65
SER
66
L
SER
67
n
66
SER
67
L
GLY
68
n
67
GLY
68
L
THR
69
n
68
THR
69
L
MET
70
n
69
MET
70
L
ALA
71
n
70
ALA
71
L
THR
72
n
71
THR
72
L
LEU
73
n
72
LEU
73
L
THR
74
n
73
THR
74
L
ILE
75
n
74
ILE
75
L
SER
76
n
75
SER
76
L
GLY
77
n
76
GLY
77
L
ALA
78
n
77
ALA
78
L
GLN
79
n
78
GLN
79
L
VAL
80
n
79
VAL
80
L
GLU
81
n
80
GLU
81
L
ASP
82
n
81
ASP
82
L
GLU
83
n
82
GLU
83
L
GLY
84
n
83
GLY
84
L
ASP
85
n
84
ASP
85
L
TYR
86
n
85
TYR
86
L
TYR
87
n
86
TYR
87
L
CYS
88
n
87
CYS
88
L
SER
89
n
88
SER
89
L
SER
90
n
89
SER
90
L
THR
91
n
90
THR
91
L
ASP
92
n
91
ASP
92
L
SER
93
n
92
SER
93
L
SER
94
n
93
SER
94
L
GLY
95
n
94
GLY
95
L
ASP
95
n
95
A
ASP
95
L
HIS
95
n
96
B
HIS
95
L
TYR
96
n
97
TYR
96
L
VAL
97
n
98
VAL
97
L
PHE
98
n
99
PHE
98
L
GLY
99
n
100
GLY
99
L
THR
100
n
101
THR
100
L
GLY
101
n
102
GLY
101
L
THR
102
n
103
THR
102
L
LYS
103
n
104
LYS
103
L
VAL
104
n
105
VAL
104
L
THR
105
n
106
THR
105
L
VAL
106
n
107
VAL
106
L
LEU
106
n
108
A
LEU
106
L
GLY
107
n
109
GLY
107
L
GLN
108
n
110
GLN
108
L
PRO
109
n
111
PRO
109
L
LYS
110
n
112
LYS
110
L
ALA
111
n
113
ALA
111
L
ASN
112
n
114
ASN
112
L
PRO
113
n
115
PRO
113
L
SER
114
n
116
SER
114
L
VAL
115
n
117
VAL
115
L
THR
116
n
118
THR
116
L
LEU
117
n
119
LEU
117
L
PHE
118
n
120
PHE
118
L
PRO
119
n
121
PRO
119
L
PRO
120
n
122
PRO
120
L
SER
121
n
123
SER
121
L
SER
122
n
124
SER
122
L
GLU
123
n
125
GLU
123
L
GLU
124
n
126
GLU
124
L
LEU
125
n
127
LEU
125
L
GLN
126
n
128
GLN
126
L
ALA
127
n
129
ALA
127
L
ASN
128
n
130
ASN
128
L
LYS
129
n
131
LYS
129
L
ALA
130
n
132
ALA
130
L
THR
131
n
133
THR
131
L
LEU
132
n
134
LEU
132
L
VAL
133
n
135
VAL
133
L
CYS
134
n
136
CYS
134
L
LEU
135
n
137
LEU
135
L
ILE
136
n
138
ILE
136
L
SER
137
n
139
SER
137
L
ASP
138
n
140
ASP
138
L
PHE
139
n
141
PHE
139
L
TYR
140
n
142
TYR
140
L
PRO
141
n
143
PRO
141
L
GLY
142
n
144
GLY
142
L
ALA
143
n
145
ALA
143
L
VAL
144
n
146
VAL
144
L
THR
145
n
147
THR
145
L
VAL
146
n
148
VAL
146
L
ALA
147
n
149
ALA
147
L
TRP
148
n
150
TRP
148
L
LYS
149
n
151
LYS
149
L
ALA
150
n
152
ALA
150
L
ASP
151
n
153
ASP
151
L
SER
152
n
154
SER
152
L
SER
153
n
155
SER
153
L
PRO
154
n
156
PRO
154
L
VAL
155
n
157
VAL
155
L
LYS
156
n
158
LYS
156
L
ALA
157
n
159
ALA
157
L
GLY
158
n
160
GLY
158
L
VAL
159
n
161
VAL
159
L
GLU
160
n
162
GLU
160
L
THR
161
n
163
THR
161
L
THR
162
n
164
THR
162
L
THR
163
n
165
THR
163
L
PRO
164
n
166
PRO
164
L
SER
165
n
167
SER
165
L
LYS
166
n
168
LYS
166
L
GLN
167
n
169
GLN
167
L
SER
168
n
170
SER
168
L
ASN
169
n
171
ASN
169
L
ASN
170
n
172
ASN
170
L
LYS
171
n
173
LYS
171
L
TYR
172
n
174
TYR
172
L
ALA
173
n
175
ALA
173
L
ALA
174
n
176
ALA
174
L
SER
175
n
177
SER
175
L
SER
176
n
178
SER
176
L
TYR
177
n
179
TYR
177
L
LEU
178
n
180
LEU
178
L
SER
179
n
181
SER
179
L
LEU
180
n
182
LEU
180
L
THR
181
n
183
THR
181
L
PRO
182
n
184
PRO
182
L
GLU
183
n
185
GLU
183
L
GLN
184
n
186
GLN
184
L
TRP
185
n
187
TRP
185
L
LYS
186
n
188
LYS
186
L
SER
187
n
189
SER
187
L
HIS
188
n
190
HIS
188
L
ARG
189
n
191
ARG
189
L
SER
190
n
192
SER
190
L
TYR
191
n
193
TYR
191
L
SER
192
n
194
SER
192
L
CYS
193
n
195
CYS
193
L
GLN
194
n
196
GLN
194
L
VAL
195
n
197
VAL
195
L
THR
196
n
198
THR
196
L
HIS
197
n
199
HIS
197
L
GLU
198
n
200
GLU
198
L
GLY
199
n
201
GLY
199
L
SER
200
n
202
SER
200
L
THR
201
n
203
THR
201
L
VAL
202
n
204
VAL
202
L
GLU
203
n
205
GLU
203
L
LYS
204
n
206
LYS
204
L
THR
205
n
207
THR
205
L
VAL
206
n
208
VAL
206
L
ALA
207
n
209
ALA
207
L
PRO
208
n
210
PRO
208
L
THR
209
n
211
THR
209
L
GLU
210
n
212
GLU
210
L
CYS
211
n
213
CYS
211
L
SER
212
n
214
SER
212
L
n
1
301
P
n
2
302
P
n
3
303
P
ARG
304
n
4
ARG
304
P
LYS
305
n
5
LYS
305
P
ARG
306
n
6
ARG
306
P
ILE
307
n
7
ILE
307
P
HIS
308
n
8
HIS
308
P
ILE
309
n
9
ILE
309
P
GLY
312
n
10
GLY
312
P
PRO
313
n
11
PRO
313
P
GLY
314
n
12
GLY
314
P
ARG
315
n
13
ARG
315
P
ALA
316
n
14
ALA
316
P
PHE
317
n
15
PHE
317
P
TYR
318
n
16
TYR
318
P
THR
319
n
17
THR
319
P
n
18
320
P
n
19
321
P
n
20
322
P
n
21
323
P
n
22
324
P
n
23
325
P
author_and_software_defined_assembly
PISA
3
trimeric
none
6210
-13
20620
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
VAL
5
A
N
VAL
5
H
O
LYS
23
A
O
LYS
23
H
N
ILE
20
A
N
ILE
20
H
O
MET
80
A
O
MET
81
H
O
TYR
79
A
O
TYR
80
H
N
SER
70
A
N
SER
71
H
N
GLU
10
A
N
GLU
10
H
O
LEU
108
A
O
LEU
118
H
O
VAL
109
A
O
VAL
119
H
N
ALA
88
A
N
ALA
92
H
O
ALA
93
A
O
ALA
97
H
N
HIS
35
A
N
HIS
35
H
N
TRP
36
A
N
TRP
36
H
O
MET
48
A
O
MET
48
H
N
TRP
50
A
N
TRP
50
H
O
ARG
58
A
O
ARG
59
H
N
GLU
10
A
N
GLU
10
H
O
LEU
108
A
O
LEU
118
H
O
VAL
109
A
O
VAL
119
H
N
ALA
88
A
N
ALA
92
H
N
ARG
94
A
N
ARG
98
H
O
ASP
102
A
O
ASP
112
H
N
LEU
124
A
N
LEU
134
H
O
GLY
139
A
O
GLY
149
H
N
TYR
145
A
N
TYR
155
H
O
TYR
176
A
O
TYR
186
H
O
VAL
181
A
O
VAL
191
H
N
HIS
164
A
N
HIS
174
H
N
LEU
124
A
N
LEU
134
H
O
GLY
139
A
O
GLY
149
H
N
TYR
145
A
N
TYR
155
H
O
TYR
176
A
O
TYR
186
H
O
SER
177
A
O
SER
187
H
N
VAL
169
A
N
VAL
179
H
N
SER
153
A
N
SER
163
H
O
ASN
197
A
O
ASN
207
H
N
VAL
198
A
N
VAL
208
H
O
VAL
207
A
O
VAL
217
L
N
VAL
11
B
N
VAL
10
L
O
THR
105
B
O
THR
106
L
O
VAL
104
B
O
VAL
105
L
N
GLY
84
B
N
GLY
83
L
O
TYR
87
B
O
TYR
86
L
N
TYR
36
B
N
TYR
35
L
N
GLN
37
B
N
GLN
36
L
O
VAL
45
B
O
VAL
44
L
N
VAL
11
B
N
VAL
10
L
O
THR
105
B
O
THR
106
L
O
VAL
104
B
O
VAL
105
L
N
GLY
84
B
N
GLY
83
L
N
SER
90
B
N
SER
89
L
O
VAL
97
B
O
VAL
98
L
N
ILE
21
B
N
ILE
20
L
O
LEU
73
B
O
LEU
72
L
O
THR
74
B
O
THR
73
L
N
SER
63
B
N
SER
62
L
N
THR
116
B
N
THR
118
L
O
LEU
135
B
O
LEU
137
L
N
ILE
136
B
N
ILE
138
L
O
ALA
174
B
O
ALA
176
L
O
TYR
177
B
O
TYR
179
L
N
GLU
160
B
N
GLU
162
L
N
THR
116
B
N
THR
118
L
O
LEU
135
B
O
LEU
137
L
N
ILE
136
B
N
ILE
138
L
O
ALA
174
B
O
ALA
176
L
O
ALA
173
B
O
ALA
175
L
N
SER
165
B
N
SER
167
L
O
SER
153
B
O
SER
155
L
N
ALA
150
B
N
ALA
152
L
N
ALA
147
B
N
ALA
149
L
O
GLN
194
B
O
GLN
196
L
N
HIS
197
B
N
HIS
199
L
O
SER
200
B
O
SER
202
P
N
ILE
307
C
N
ILE
7
P
O
PHE
317
C
O
PHE
15
1
H
ASP
217
A
ASP
227
1
Y
1
H
LYS
218
A
LYS
228
1
Y
1
H
THR
219
A
THR
229
1
Y
1
H
HIS
220
A
HIS
230
1
Y
1
L
SER
1
B
SER
1
1
Y
1
P
TYR
301
C
TYR
1
1
Y
1
P
ASN
302
C
ASN
2
1
Y
1
P
LYS
303
C
LYS
3
1
Y
1
P
THR
320
C
THR
18
1
Y
1
P
LYS
321
C
LYS
19
1
Y
1
P
ASN
322
C
ASN
20
1
Y
1
P
ILE
323
C
ILE
21
1
Y
1
P
ILE
324
C
ILE
22
1
Y
1
P
GLY
325
C
GLY
23
1
Y
1
H
L
O
O
HOH
HOH
571
402
2.08
1
H
L
O
O
HOH
HOH
543
379
2.11
1
H
H
O
O
HOH
HOH
487
555
2.16
B
1
H
H
OG
O
SER
HOH
82
401
2.18
1
H
L
O
O
HOH
HOH
401
409
2.13
1_555
3_644
1
H
THR
160
-131.66
-32.74
1
H
SER
215
-106.77
-74.37
1
L
ASP
51
75.34
-47.02
1
L
ASN
52
-149.54
11.78
1
L
ASP
151
50.96
-115.28
0.2164
0.1735
0.1761
1.978
28.218
1999
32441
6.16
98.79
0.23
1
FREE R-VALUE
1.38
20.60
0.90
1.11
1.978
28.218
348
3820
0
0
3472
0.007
3565
0.931
4866
14.957
2123
0.057
558
0.006
612
0.3333
0.2532
2.0277
121
1851
84.00
0.2386
0.2223
2.0825
142
2136
100.00
0.2527
0.1990
2.1437
142
2161
100.00
0.2736
0.1899
2.2129
142
2174
100.00
0.2274
0.1918
2.2920
142
2150
100.00
0.2534
0.1927
2.3837
142
2175
100.00
0.2120
0.1909
2.4921
142
2170
100.00
0.2389
0.1894
2.6234
143
2181
100.00
0.2644
0.1864
2.7876
144
2202
100.00
0.2437
0.1864
3.0026
145
2189
100.00
0.2229
0.1802
3.3044
145
2208
100.00
0.1981
0.1600
3.7816
146
2221
100.00
0.1800
0.1391
4.7607
148
2252
100.00
0.1706
0.1555
28.2207
155
2372
100.00
1.978
28.22
6DB6
32451
0.117
1
10.10
6.6
98.74
0.784
1.978
2.049
2060
1
refinement
PHENIX
(1.13_2998: ???)
data scaling
XDS
model building
Coot
phasing
PHASER
N
Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain, HIV-1 gp120 third variable region (V3)
Crystal structure of anti-HIV-1 V3 Fab 311-11D in complex with a HIV-1 gp120 V3 peptide from MN strain
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
H
ASN
28
A
ASN
28
HELX_P
H
THR
31
A
THR
31
5
AA1
4
H
THR
73
A
THR
74
HELX_P
H
ALA
75
A
ALA
76
5
AA2
3
H
THR
83
A
THR
87
HELX_P
H
THR
87
A
THR
91
5
AA3
5
H
SER
127
A
SER
137
HELX_P
H
THR
131
A
THR
141
5
AA4
5
H
SER
156
A
SER
166
HELX_P
H
ALA
158
A
ALA
168
5
AA5
3
H
SER
187
A
SER
197
HELX_P
H
LEU
189
A
LEU
199
5
AA6
3
H
LYS
201
A
LYS
211
HELX_P
H
ASN
204
A
ASN
214
5
AA7
4
L
GLN
79
B
GLN
78
HELX_P
L
GLU
83
B
GLU
82
5
AA8
5
L
SER
121
B
SER
123
HELX_P
L
ALA
127
B
ALA
129
1
AA9
7
L
THR
181
B
THR
183
HELX_P
L
SER
187
B
SER
189
1
AB1
7
disulf
2.058
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
96
1_555
disulf
2.045
H
CYS
140
A
SG
CYS
150
1_555
H
CYS
196
A
SG
CYS
206
1_555
disulf
2.029
H
CYS
216
A
SG
CYS
226
1_555
L
CYS
211
B
SG
CYS
213
1_555
disulf
2.048
L
CYS
23
B
SG
CYS
22
1_555
L
CYS
88
B
SG
CYS
87
1_555
disulf
2.034
L
CYS
134
B
SG
CYS
136
1_555
L
CYS
193
B
SG
CYS
195
1_555
covale
1.433
one
N-Glycosylation
H
ASN
28
A
ND2
ASN
28
1_555
A
NAG
1
D
C1
NAG
1_555
covale
1.434
both
A
NAG
1
D
O4
NAG
1_555
A
NAG
2
D
C1
NAG
1_555
covale
1.440
one
A
NAG
1
D
O6
NAG
1_555
A
FCA
5
D
C1
FCA
1_555
covale
1.462
both
A
NAG
2
D
O4
NAG
1_555
A
BMA
3
D
C1
BMA
1_555
covale
1.455
one
A
BMA
3
D
O6
BMA
1_555
A
MAN
4
D
C1
MAN
1_555
IMMUNE SYSTEM
HIV-1, gp120, V3, mAb, IMMUNE SYSTEM
H
PHE
146
A
PHE
156
1
H
PRO
147
A
PRO
157
-1.88
H
GLU
148
A
GLU
158
1
H
PRO
149
A
PRO
159
3.09
L
TYR
140
B
TYR
142
1
L
PRO
141
B
PRO
143
-4.58
6DB6
PDB
1
1
6DB6
6DB6
PDB
2
1
6DB6
6DB6
PDB
3
1
6DB6
1
220
6DB6
1
220
6DB6
H
1
1
230
1
212
6DB6
1
212
6DB6
L
2
1
214
301
325
6DB6
301
325
6DB6
P
3
1
23
4
6
4
4
4
3
5
4
3
4
4
4
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
GLN
6
A
GLN
6
H
VAL
18
A
VAL
18
H
SER
25
A
SER
25
H
THR
77
A
THR
78
H
LEU
82
A
LEU
83
H
VAL
67
A
VAL
68
H
ASP
72
A
ASP
73
H
GLU
10
A
GLU
10
H
LYS
12
A
LYS
12
H
THR
107
A
THR
117
H
VAL
111
A
VAL
121
H
ALA
88
A
ALA
92
H
GLU
95
A
GLU
99
H
ALA
33
A
ALA
33
H
GLN
39
A
GLN
39
H
GLU
46
A
GLU
46
H
ASN
52
A
ASN
52
H
THR
57
A
THR
58
H
TYR
59
A
TYR
60
H
GLU
10
A
GLU
10
H
LYS
12
A
LYS
12
H
THR
107
A
THR
117
H
VAL
111
A
VAL
121
H
ALA
88
A
ALA
92
H
GLU
95
A
GLU
99
H
ALA
100
A
ALA
110
H
TRP
103
A
TRP
113
F
H
SER
120
A
SER
130
H
LEU
124
A
LEU
134
H
THR
135
A
THR
145
H
TYR
145
A
TYR
155
H
TYR
176
A
TYR
186
H
PRO
185
A
PRO
195
H
VAL
163
A
VAL
173
H
THR
165
A
THR
175
H
SER
120
A
SER
130
H
LEU
124
A
LEU
134
H
THR
135
A
THR
145
H
TYR
145
A
TYR
155
H
TYR
176
A
TYR
186
H
PRO
185
A
PRO
195
H
VAL
169
A
VAL
179
H
LEU
170
A
LEU
180
H
THR
151
A
THR
161
H
TRP
154
A
TRP
164
H
ILE
195
A
ILE
205
H
HIS
200
A
HIS
210
H
THR
205
A
THR
215
H
ARG
210
A
ARG
220
L
SER
9
B
SER
9
L
VAL
13
B
VAL
12
L
THR
102
B
THR
103
L
VAL
106
B
VAL
107
L
GLY
84
B
GLY
83
L
THR
91
B
THR
90
L
TYR
34
B
TYR
33
L
GLN
38
B
GLN
37
L
VAL
45
B
VAL
44
L
ILE
48
B
ILE
47
L
SER
9
B
SER
9
L
VAL
13
B
VAL
12
L
THR
102
B
THR
103
L
VAL
106
B
VAL
107
L
GLY
84
B
GLY
83
L
THR
91
B
THR
90
L
TYR
96
B
TYR
97
L
PHE
98
B
PHE
99
L
ALA
19
B
ALA
18
L
SER
24
B
SER
23
L
MET
70
B
MET
69
L
ILE
75
B
ILE
74
L
PHE
62
B
PHE
61
L
SER
67
B
SER
66
L
SER
114
B
SER
116
L
PHE
118
B
PHE
120
L
ALA
130
B
ALA
132
L
PHE
139
B
PHE
141
L
TYR
172
B
TYR
174
L
LEU
180
B
LEU
182
L
VAL
159
B
VAL
161
L
THR
161
B
THR
163
L
SER
114
B
SER
116
L
PHE
118
B
PHE
120
L
ALA
130
B
ALA
132
L
PHE
139
B
PHE
141
L
TYR
172
B
TYR
174
L
LEU
180
B
LEU
182
L
SER
165
B
SER
167
L
LYS
166
B
LYS
168
L
SER
153
B
SER
155
L
VAL
155
B
VAL
157
L
THR
145
B
THR
147
L
ALA
150
B
ALA
152
L
TYR
191
B
TYR
193
L
HIS
197
B
HIS
199
L
SER
200
B
SER
202
L
VAL
206
B
VAL
208
P
ARG
306
C
ARG
6
P
GLY
312
C
GLY
10
P
ARG
315
C
ARG
13
P
TYR
318
C
TYR
16
19
P 21 21 21