0.017153
0.000000
0.000000
0.000000
0.011593
0.000000
0.000000
0.000000
0.021737
0.000000
0.000000
0.000000
Wong-Sam, A.E.
Wang, Y.-F.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.300
86.259
46.005
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C31 H33 F3 N2 O5 S
602.664
N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
TIPRANAVIR
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
Y
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
S
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
S
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
NA
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
R
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
C
N
342
R
C
N
343
N
O
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
S
C
N
357
N
C
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
N
Y
365
N
C
N
366
N
S
N
367
N
O
N
368
N
O
Y
369
N
C
Y
370
N
N
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
C
N
376
N
F
N
377
N
F
N
378
N
F
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
N
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
C
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
doub
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
US
ACS Omega
2470-1343
3
12132
12140
10.1021/acsomega.8b01683
30288468
Drug Resistance Mutation L76V Alters Nonpolar Interactions at the Flap-Core Interface of HIV-1 Protease.
2018
10.2210/pdb6dif/pdb
pdb_00006dif
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2014-06-19
RAYONIX MX300HE
Y
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-ID
10740.677
HIV-1 protease
Q7K, L33I, L63I, C67A, C95A
2
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
3
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
602.664
N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
1
syn
non-polymer
18.015
water
209
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
99
pol
11676
Human immunodeficiency virus 1
469008
Escherichia coli
BL21(DE3)
Biological sequence
1
2.69
54.32
VAPOR DIFFUSION, HANGING DROP
4.4
3.5 mg/ml protein, 1:5 protease to inhibitor, 1:1 liquor to sample, 1.1 M NaCl, 100 mM NaOAc, 30% glycerol cryoprotectant
4.4
298
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2018-10-17
1
1
2019-12-18
1
2
2023-10-11
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
United States
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)
GM062920
Wild type with DRV
N
RCSB
Y
RCSB
2018-05-23
REL
REL
1
A
O
HOH
704
5.89
NA
SODIUM ION
CL
CHLORIDE ION
GOL
GLYCEROL
TPV
N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
HOH
water
3NU3
PDB
experimental model
NA
501
2
NA
NA
501
A
CL
511
3
CL
CL
502
A
CL
512
3
CL
CL
503
A
GOL
522
4
GOL
GOL
504
A
TPV
201
5
TPV
TPV
201
B
CL
513
3
CL
CL
202
B
GOL
521
4
GOL
GOL
203
B
GOL
523
4
GOL
GOL
204
B
HOH
1004
6
HOH
HOH
601
A
HOH
1125
6
HOH
HOH
602
A
HOH
1104
6
HOH
HOH
603
A
HOH
1113
6
HOH
HOH
604
A
HOH
1059
6
HOH
HOH
605
A
HOH
1091
6
HOH
HOH
606
A
HOH
1056
6
HOH
HOH
607
A
HOH
1065
6
HOH
HOH
608
A
HOH
1133
6
HOH
HOH
609
A
HOH
1142
6
HOH
HOH
610
A
HOH
1136
6
HOH
HOH
611
A
HOH
1005
6
HOH
HOH
612
A
HOH
1086
6
HOH
HOH
613
A
HOH
1171
6
HOH
HOH
614
A
HOH
1168
6
HOH
HOH
615
A
HOH
1006
6
HOH
HOH
616
A
HOH
1180
6
HOH
HOH
617
A
HOH
1162
6
HOH
HOH
618
A
HOH
1057
6
HOH
HOH
619
A
HOH
1198
6
HOH
HOH
620
A
HOH
1166
6
HOH
HOH
621
A
HOH
1150
6
HOH
HOH
622
A
HOH
1011
6
HOH
HOH
623
A
HOH
1002
6
HOH
HOH
624
A
HOH
1060
6
HOH
HOH
625
A
HOH
1177
6
HOH
HOH
626
A
HOH
1105
6
HOH
HOH
627
A
HOH
1102
6
HOH
HOH
628
A
HOH
1067
6
HOH
HOH
629
A
HOH
1045
6
HOH
HOH
630
A
HOH
1189
6
HOH
HOH
631
A
HOH
1030
6
HOH
HOH
632
A
HOH
1076
6
HOH
HOH
633
A
HOH
1018
6
HOH
HOH
634
A
HOH
1050
6
HOH
HOH
635
A
HOH
1112
6
HOH
HOH
636
A
HOH
1017
6
HOH
HOH
637
A
HOH
1122
6
HOH
HOH
638
A
HOH
1182
6
HOH
HOH
639
A
HOH
1033
6
HOH
HOH
640
A
HOH
1099
6
HOH
HOH
641
A
HOH
1210
6
HOH
HOH
642
A
HOH
1201
6
HOH
HOH
643
A
HOH
1095
6
HOH
HOH
644
A
HOH
1001
6
HOH
HOH
645
A
HOH
1028
6
HOH
HOH
646
A
HOH
1031
6
HOH
HOH
647
A
HOH
1209
6
HOH
HOH
648
A
HOH
1063
6
HOH
HOH
649
A
HOH
1021
6
HOH
HOH
650
A
HOH
1114
6
HOH
HOH
651
A
HOH
1092
6
HOH
HOH
652
A
HOH
1188
6
HOH
HOH
653
A
HOH
1090
6
HOH
HOH
654
A
HOH
1140
6
HOH
HOH
655
A
HOH
1183
6
HOH
HOH
656
A
HOH
1107
6
HOH
HOH
657
A
HOH
1135
6
HOH
HOH
658
A
HOH
1208
6
HOH
HOH
659
A
HOH
1134
6
HOH
HOH
660
A
HOH
1157
6
HOH
HOH
661
A
HOH
1024
6
HOH
HOH
662
A
HOH
1207
6
HOH
HOH
663
A
HOH
1131
6
HOH
HOH
664
A
HOH
1049
6
HOH
HOH
665
A
HOH
1007
6
HOH
HOH
666
A
HOH
1127
6
HOH
HOH
667
A
HOH
1109
6
HOH
HOH
668
A
HOH
1163
6
HOH
HOH
669
A
HOH
1202
6
HOH
HOH
670
A
HOH
1037
6
HOH
HOH
671
A
HOH
1052
6
HOH
HOH
672
A
HOH
1117
6
HOH
HOH
673
A
HOH
1126
6
HOH
HOH
674
A
HOH
1034
6
HOH
HOH
675
A
HOH
1019
6
HOH
HOH
676
A
HOH
1085
6
HOH
HOH
677
A
HOH
1023
6
HOH
HOH
678
A
HOH
1175
6
HOH
HOH
679
A
HOH
1064
6
HOH
HOH
680
A
HOH
1068
6
HOH
HOH
681
A
HOH
1098
6
HOH
HOH
682
A
HOH
1009
6
HOH
HOH
683
A
HOH
1132
6
HOH
HOH
684
A
HOH
1158
6
HOH
HOH
685
A
HOH
1010
6
HOH
HOH
686
A
HOH
1108
6
HOH
HOH
687
A
HOH
1058
6
HOH
HOH
688
A
HOH
1199
6
HOH
HOH
689
A
HOH
1146
6
HOH
HOH
690
A
HOH
1161
6
HOH
HOH
691
A
HOH
1094
6
HOH
HOH
692
A
HOH
1176
6
HOH
HOH
693
A
HOH
1008
6
HOH
HOH
694
A
HOH
1200
6
HOH
HOH
695
A
HOH
1141
6
HOH
HOH
696
A
HOH
1097
6
HOH
HOH
697
A
HOH
1129
6
HOH
HOH
698
A
HOH
1153
6
HOH
HOH
699
A
HOH
1149
6
HOH
HOH
700
A
HOH
1160
6
HOH
HOH
701
A
HOH
1167
6
HOH
HOH
702
A
HOH
1193
6
HOH
HOH
703
A
HOH
1190
6
HOH
HOH
704
A
HOH
1155
6
HOH
HOH
301
B
HOH
1186
6
HOH
HOH
302
B
HOH
1120
6
HOH
HOH
303
B
HOH
1080
6
HOH
HOH
304
B
HOH
1123
6
HOH
HOH
305
B
HOH
1144
6
HOH
HOH
306
B
HOH
1159
6
HOH
HOH
307
B
HOH
1055
6
HOH
HOH
308
B
HOH
1106
6
HOH
HOH
309
B
HOH
1116
6
HOH
HOH
310
B
HOH
1044
6
HOH
HOH
311
B
HOH
1042
6
HOH
HOH
312
B
HOH
1195
6
HOH
HOH
313
B
HOH
1071
6
HOH
HOH
314
B
HOH
1020
6
HOH
HOH
315
B
HOH
1100
6
HOH
HOH
316
B
HOH
1121
6
HOH
HOH
317
B
HOH
1165
6
HOH
HOH
318
B
HOH
1026
6
HOH
HOH
319
B
HOH
1061
6
HOH
HOH
320
B
HOH
1070
6
HOH
HOH
321
B
HOH
1088
6
HOH
HOH
322
B
HOH
1046
6
HOH
HOH
323
B
HOH
1040
6
HOH
HOH
324
B
HOH
1038
6
HOH
HOH
325
B
HOH
1072
6
HOH
HOH
326
B
HOH
1081
6
HOH
HOH
327
B
HOH
1093
6
HOH
HOH
328
B
HOH
1205
6
HOH
HOH
329
B
HOH
1151
6
HOH
HOH
330
B
HOH
1003
6
HOH
HOH
331
B
HOH
1124
6
HOH
HOH
332
B
HOH
1022
6
HOH
HOH
333
B
HOH
1013
6
HOH
HOH
334
B
HOH
1048
6
HOH
HOH
335
B
HOH
1148
6
HOH
HOH
336
B
HOH
1185
6
HOH
HOH
337
B
HOH
1079
6
HOH
HOH
338
B
HOH
1078
6
HOH
HOH
339
B
HOH
1054
6
HOH
HOH
340
B
HOH
1012
6
HOH
HOH
341
B
HOH
1053
6
HOH
HOH
342
B
HOH
1041
6
HOH
HOH
343
B
HOH
1016
6
HOH
HOH
344
B
HOH
1139
6
HOH
HOH
345
B
HOH
1203
6
HOH
HOH
346
B
HOH
1087
6
HOH
HOH
347
B
HOH
1115
6
HOH
HOH
348
B
HOH
1169
6
HOH
HOH
349
B
HOH
1015
6
HOH
HOH
350
B
HOH
1147
6
HOH
HOH
351
B
HOH
1204
6
HOH
HOH
352
B
HOH
1027
6
HOH
HOH
353
B
HOH
1206
6
HOH
HOH
354
B
HOH
1156
6
HOH
HOH
355
B
HOH
1039
6
HOH
HOH
356
B
HOH
1089
6
HOH
HOH
357
B
HOH
1187
6
HOH
HOH
358
B
HOH
1077
6
HOH
HOH
359
B
HOH
1069
6
HOH
HOH
360
B
HOH
1170
6
HOH
HOH
361
B
HOH
1174
6
HOH
HOH
362
B
HOH
1130
6
HOH
HOH
363
B
HOH
1101
6
HOH
HOH
364
B
HOH
1096
6
HOH
HOH
365
B
HOH
1103
6
HOH
HOH
366
B
HOH
1074
6
HOH
HOH
367
B
HOH
1062
6
HOH
HOH
368
B
HOH
1152
6
HOH
HOH
369
B
HOH
1036
6
HOH
HOH
370
B
HOH
1154
6
HOH
HOH
371
B
HOH
1029
6
HOH
HOH
372
B
HOH
1032
6
HOH
HOH
373
B
HOH
1197
6
HOH
HOH
374
B
HOH
1173
6
HOH
HOH
375
B
HOH
1075
6
HOH
HOH
376
B
HOH
1014
6
HOH
HOH
377
B
HOH
1051
6
HOH
HOH
378
B
HOH
1145
6
HOH
HOH
379
B
HOH
1083
6
HOH
HOH
380
B
HOH
1184
6
HOH
HOH
381
B
HOH
1196
6
HOH
HOH
382
B
HOH
1194
6
HOH
HOH
383
B
HOH
1043
6
HOH
HOH
384
B
HOH
1192
6
HOH
HOH
385
B
HOH
1138
6
HOH
HOH
386
B
HOH
1110
6
HOH
HOH
387
B
HOH
1047
6
HOH
HOH
388
B
HOH
1035
6
HOH
HOH
389
B
HOH
1172
6
HOH
HOH
390
B
HOH
1143
6
HOH
HOH
391
B
HOH
1084
6
HOH
HOH
392
B
HOH
1119
6
HOH
HOH
393
B
HOH
1111
6
HOH
HOH
394
B
HOH
1128
6
HOH
HOH
395
B
HOH
1118
6
HOH
HOH
396
B
HOH
1178
6
HOH
HOH
397
B
HOH
1073
6
HOH
HOH
398
B
HOH
1137
6
HOH
HOH
399
B
HOH
1082
6
HOH
HOH
400
B
HOH
1179
6
HOH
HOH
401
B
HOH
1181
6
HOH
HOH
402
B
HOH
1066
6
HOH
HOH
403
B
HOH
1025
6
HOH
HOH
404
B
HOH
1191
6
HOH
HOH
405
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
ILE
33
n
33
ILE
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
ALA
67
n
67
ALA
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
ALA
95
n
95
ALA
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
0.1387
0.1555
0.1370
0.1537
0.1685
0.1867
2988
3580
5.0
5.0
59544
author_and_software_defined_assembly
PISA
2
dimeric
none
6240
-57
9240
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
608
K
O
HOH
1_555
92.9
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
632
K
O
HOH
1_555
103.3
A
HOH
608
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
632
K
O
HOH
1_555
162.4
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
K
O
HOH
1_555
95.0
A
HOH
608
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
K
O
HOH
1_555
93.8
A
HOH
632
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
K
O
HOH
1_555
78.2
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
662
K
O
HOH
1_555
78.7
A
HOH
608
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
662
K
O
HOH
1_555
89.8
A
HOH
632
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
662
K
O
HOH
1_555
100.0
A
HOH
646
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
662
K
O
HOH
1_555
172.9
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
680
K
O
HOH
1_555
168.9
A
HOH
608
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
680
K
O
HOH
1_555
76.6
A
HOH
632
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
680
K
O
HOH
1_555
87.6
A
HOH
646
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
680
K
O
HOH
1_555
89.5
A
HOH
662
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
680
K
O
HOH
1_555
97.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
ASN
98
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
43
B
N
LYS
43
B
O
GLN
58
B
O
GLN
58
B
N
ILE
66
B
N
ILE
66
B
O
HIS
69
B
O
HIS
69
B
O
LEU
76
B
O
LEU
76
B
N
ILE
33
B
N
ILE
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
LYS
14
B
N
LYS
14
B
O
GLU
65
B
O
GLU
65
1
22.21
1.40
123.60
145.81
A
A
A
CD
NE
CZ
ARG
ARG
ARG
57
57
57
A
A
A
N
1
-3.28
0.50
120.30
117.02
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
57
57
57
A
A
A
N
1
16.62
2.70
114.20
130.82
A
A
A
CB
CG
CD
GLU
GLU
GLU
65
65
65
B
B
B
N
1
-3.77
0.50
120.30
116.53
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
-3.02
0.50
120.30
117.28
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
41
41
41
N
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?
0.1867
0.1537
0.1555
0.1555
1.20
25.0
3580
71471
71617
5.0
97.6
RANDOM
1
FREE R-VALUE
0.0
MOLECULAR REPLACEMENT
3NU3
51
0.00
1746.95
1.20
25.0
232
1786
42
0
1512
0.014
0.034
0.000
0.0283
0.084
0.090
0.028
0.005
0.036
0.087
1.20
50
6DIF
71617
0.097
1
15.9
5.2
97.6
0.444
1.20
1.24
2.0
1
3.2
85.4
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
refinement
SHELXL-97
N
Wild-type HIV-1 protease in complex with tipranavir
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
3
N
N
4
N
N
4
N
N
6
N
N
6
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
AA1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
AA2
3
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
AA3
6
metalc
2.286
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
metalc
2.396
A
NA
501
C
NA
NA
1_555
A
HOH
608
K
O
HOH
1_555
metalc
2.383
A
NA
501
C
NA
NA
1_555
A
HOH
632
K
O
HOH
1_555
metalc
2.418
A
NA
501
C
NA
NA
1_555
A
HOH
646
K
O
HOH
1_555
metalc
2.350
A
NA
501
C
NA
NA
1_555
A
HOH
662
K
O
HOH
1_555
metalc
2.653
A
NA
501
C
NA
NA
1_555
A
HOH
680
K
O
HOH
1_555
Hydrolase/Hydrolase Inhibitor
Antiviral agents, protein-inhibitor structures, HIV drug resistance, Hydrolase-Hydrolase Inhibitor complex
Q5RZ08_9HIV1
UNP
1
1
Q5RZ08
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
1
99
6DIF
1
99
Q5RZ08
A
1
1
99
1
99
6DIF
1
99
Q5RZ08
B
1
1
99
1
GLN
engineered mutation
LYS
7
6DIF
A
Q5RZ08
UNP
7
7
1
LEU
engineered mutation
ILE
33
6DIF
A
Q5RZ08
UNP
33
33
1
LEU
engineered mutation
ILE
63
6DIF
A
Q5RZ08
UNP
63
63
1
CYS
engineered mutation
ALA
67
6DIF
A
Q5RZ08
UNP
67
67
1
CYS
engineered mutation
ALA
95
6DIF
A
Q5RZ08
UNP
95
95
2
GLN
engineered mutation
LYS
7
6DIF
B
Q5RZ08
UNP
7
7
2
LEU
engineered mutation
ILE
33
6DIF
B
Q5RZ08
UNP
33
33
2
LEU
engineered mutation
ILE
63
6DIF
B
Q5RZ08
UNP
63
63
2
CYS
engineered mutation
ALA
67
6DIF
B
Q5RZ08
UNP
67
67
2
CYS
engineered mutation
ALA
95
6DIF
B
Q5RZ08
UNP
95
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
TRP
42
A
TRP
42
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
VAL
32
A
VAL
32
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
ILE
33
B
ILE
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
binding site for residue NA A 501
A
NA
501
Software
6
binding site for residue CL A 502
A
CL
502
Software
3
binding site for residue CL A 503
A
CL
503
Software
3
binding site for residue GOL A 504
A
GOL
504
Software
5
binding site for residue TPV B 201
B
TPV
201
Software
37
binding site for residue CL B 202
B
CL
202
Software
4
binding site for residue GOL B 203
B
GOL
203
Software
8
binding site for residue GOL B 204
B
GOL
204
Software
7
A
ASP
60
A
ASP
60
6
1_555
A
HOH
608
K
HOH
6
1_555
A
HOH
632
K
HOH
6
1_555
A
HOH
646
K
HOH
6
1_555
A
HOH
662
K
HOH
6
1_555
A
HOH
680
K
HOH
6
1_555
A
THR
74
A
THR
74
3
1_555
A
ASN
88
A
ASN
88
3
1_555
A
HOH
695
K
HOH
3
1_555
A
GLN
18
A
GLN
18
3
1_555
A
SER
37
A
SER
37
3
1_555
A
HOH
688
K
HOH
3
1_555
A
LYS
45
A
LYS
45
5
1_555
A
MET
46
A
MET
46
5
1_555
A
HOH
604
K
HOH
5
1_555
A
HOH
641
K
HOH
5
1_555
A
HOH
655
K
HOH
5
1_555
A
ARG
8
A
ARG
8
37
1_555
A
LEU
23
A
LEU
23
37
1_555
A
ASP
25
A
ASP
25
37
1_555
A
GLY
27
A
GLY
27
37
1_555
A
ALA
28
A
ALA
28
37
1_555
A
ASP
29
A
ASP
29
37
1_555
A
ASP
30
A
ASP
30
37
1_555
A
ILE
47
A
ILE
47
37
1_555
A
GLY
48
A
GLY
48
37
1_555
A
GLY
49
A
GLY
49
37
1_555
A
ILE
50
A
ILE
50
37
1_555
A
PRO
81
A
PRO
81
37
1_555
A
VAL
82
A
VAL
82
37
1_555
A
HOH
601
K
HOH
37
1_555
A
HOH
614
K
HOH
37
1_555
A
HOH
620
K
HOH
37
1_555
A
HOH
641
K
HOH
37
1_555
A
HOH
642
K
HOH
37
1_555
B
ARG
8
B
ARG
8
37
1_555
B
LEU
23
B
LEU
23
37
1_555
B
ASP
25
B
ASP
25
37
1_555
B
GLY
27
B
GLY
27
37
1_555
B
ALA
28
B
ALA
28
37
1_555
B
ASP
29
B
ASP
29
37
1_555
B
ASP
30
B
ASP
30
37
1_555
B
ILE
47
B
ILE
47
37
1_555
B
GLY
48
B
GLY
48
37
1_555
B
GLY
49
B
GLY
49
37
1_555
B
ILE
50
B
ILE
50
37
1_555
B
PRO
81
B
PRO
81
37
1_555
B
VAL
82
B
VAL
82
37
1_555
B
ILE
84
B
ILE
84
37
1_555
B
GOL
203
I
GOL
37
1_555
B
HOH
312
L
HOH
37
1_555
B
HOH
317
L
HOH
37
1_555
B
HOH
331
L
HOH
37
1_555
B
HOH
402
L
HOH
37
1_555
B
THR
74
B
THR
74
4
1_555
B
ASN
88
B
ASN
88
4
1_555
B
HOH
333
L
HOH
4
1_555
B
HOH
397
L
HOH
4
1_555
B
ALA
28
B
ALA
28
8
1_555
B
ASP
29
B
ASP
29
8
1_555
B
ILE
47
B
ILE
47
8
1_555
B
GLY
48
B
GLY
48
8
1_555
B
TPV
201
G
TPV
8
1_555
B
HOH
317
L
HOH
8
1_555
B
HOH
322
L
HOH
8
1_555
B
HOH
331
L
HOH
8
1_555
A
LEU
5
A
LEU
5
7
1_555
A
TRP
6
A
TRP
6
7
1_555
B
ARG
87
B
ARG
87
7
1_555
B
ASN
88
B
ASN
88
7
1_555
B
THR
91
B
THR
91
7
1_555
B
HOH
301
L
HOH
7
1_555
B
HOH
307
L
HOH
7
1_555
18
P 21 21 2