0.017044
0.000000
0.000000
0.000000
0.011583
0.000000
0.000000
0.000000
0.021741
0.000000
0.000000
0.000000
Wong-Sam, A.E.
Wang, Y.F.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.672
86.337
45.997
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C30 H40 N2 O9 S
604.712
(3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
N
95
N
S
N
96
N
O
N
97
N
O
N
98
N
N
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
C
N
104
R
C
N
105
N
O
N
106
S
C
N
107
N
N
N
108
N
C
N
109
N
O
N
110
N
O
N
111
R
C
N
112
N
C
N
113
N
O
N
114
S
C
N
115
N
O
N
116
S
C
N
117
R
C
N
118
S
C
N
119
N
C
Y
120
N
C
Y
121
N
C
Y
122
N
C
Y
123
N
C
Y
124
N
C
Y
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
Y
239
N
C
Y
240
N
N
Y
241
N
C
Y
242
N
C
Y
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
S
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
N
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
S
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
NA
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
R
C
N
407
N
O
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
N
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
Y
83
N
doub
N
84
N
sing
Y
85
N
sing
Y
86
N
sing
N
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
sing
N
91
N
sing
Y
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
Y
148
N
doub
Y
149
N
sing
N
150
N
sing
Y
151
N
sing
N
152
N
sing
Y
153
N
doub
N
154
N
sing
Y
155
N
sing
N
156
N
sing
Y
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
doub
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
Y
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
US
ACS Omega
2470-1343
3
12132
12140
10.1021/acsomega.8b01683
30288468
Drug Resistance Mutation L76V Alters Nonpolar Interactions at the Flap-Core Interface of HIV-1 Protease.
2018
10.2210/pdb6dj5/pdb
pdb_00006dj5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2015-04-17
MARMOSAIC 225 mm CCD
Y
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-BM
10726.650
HIV-1 protease
Q7K, L33I, L63I, C67A, L76V, C95A
2
man
polymer
22.990
SODIUM ION
2
syn
non-polymer
35.453
CHLORIDE ION
5
syn
non-polymer
92.094
GLYCEROL
4
syn
non-polymer
604.712
(3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate
1
syn
non-polymer
18.015
water
150
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVVVGPT
PVNIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVVVGPT
PVNIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
99
pol
11676
Human immunodeficiency virus 1
469008
Escherichia coli
BL21(DE3)
Biological sequence
1
2.72
54.70
VAPOR DIFFUSION, HANGING DROP
5.2
1.1 M NaCl, 0.1 M NaOAc, pH 5.2
4.1 mg/ml protease stock, 1:5 protease to inhibitor, 30% cryoprotectant
5.2
298
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
refine_hist
struct_conn
repository
Initial release
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2018-10-17
1
1
2019-12-18
1
2
2023-10-11
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_refine_hist.d_res_low
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
United States
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)
GM062920
Wild type with DRV
N
RCSB
Y
RCSB
2018-05-24
REL
REL
NA
SODIUM ION
CL
CHLORIDE ION
GOL
GLYCEROL
G52
(3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate
HOH
water
3NU3
PDB
experimental model
NA
502
2
NA
NA
101
A
CL
511
3
CL
CL
102
A
GOL
522
4
GOL
GOL
103
A
GOL
524
4
GOL
GOL
104
A
G52
201
5
G52
G52
201
B
NA
501
2
NA
NA
202
B
CL
512
3
CL
CL
203
B
CL
513
3
CL
CL
204
B
CL
514
3
CL
CL
205
B
CL
515
3
CL
CL
206
B
GOL
521
4
GOL
GOL
207
B
GOL
523
4
GOL
GOL
208
B
HOH
1114
6
HOH
HOH
201
A
HOH
1039
6
HOH
HOH
202
A
HOH
1134
6
HOH
HOH
203
A
HOH
1046
6
HOH
HOH
204
A
HOH
1068
6
HOH
HOH
205
A
HOH
1002
6
HOH
HOH
206
A
HOH
1016
6
HOH
HOH
207
A
HOH
1133
6
HOH
HOH
208
A
HOH
1143
6
HOH
HOH
209
A
HOH
1083
6
HOH
HOH
210
A
HOH
1018
6
HOH
HOH
211
A
HOH
1020
6
HOH
HOH
212
A
HOH
1013
6
HOH
HOH
213
A
HOH
1126
6
HOH
HOH
214
A
HOH
1047
6
HOH
HOH
215
A
HOH
1099
6
HOH
HOH
216
A
HOH
1003
6
HOH
HOH
217
A
HOH
1032
6
HOH
HOH
218
A
HOH
1061
6
HOH
HOH
219
A
HOH
1019
6
HOH
HOH
220
A
HOH
1072
6
HOH
HOH
221
A
HOH
1014
6
HOH
HOH
222
A
HOH
1077
6
HOH
HOH
223
A
HOH
1148
6
HOH
HOH
224
A
HOH
1026
6
HOH
HOH
225
A
HOH
1081
6
HOH
HOH
226
A
HOH
1010
6
HOH
HOH
227
A
HOH
1123
6
HOH
HOH
228
A
HOH
1035
6
HOH
HOH
229
A
HOH
1037
6
HOH
HOH
230
A
HOH
1113
6
HOH
HOH
231
A
HOH
1028
6
HOH
HOH
232
A
HOH
1128
6
HOH
HOH
233
A
HOH
1043
6
HOH
HOH
234
A
HOH
1025
6
HOH
HOH
235
A
HOH
1132
6
HOH
HOH
236
A
HOH
1070
6
HOH
HOH
237
A
HOH
1086
6
HOH
HOH
238
A
HOH
1085
6
HOH
HOH
239
A
HOH
1005
6
HOH
HOH
240
A
HOH
1074
6
HOH
HOH
241
A
HOH
1116
6
HOH
HOH
242
A
HOH
1067
6
HOH
HOH
243
A
HOH
1102
6
HOH
HOH
244
A
HOH
1075
6
HOH
HOH
245
A
HOH
1038
6
HOH
HOH
246
A
HOH
1011
6
HOH
HOH
247
A
HOH
1022
6
HOH
HOH
248
A
HOH
1006
6
HOH
HOH
249
A
HOH
1073
6
HOH
HOH
250
A
HOH
1091
6
HOH
HOH
251
A
HOH
1009
6
HOH
HOH
252
A
HOH
1130
6
HOH
HOH
253
A
HOH
1088
6
HOH
HOH
254
A
HOH
1104
6
HOH
HOH
255
A
HOH
1049
6
HOH
HOH
256
A
HOH
1066
6
HOH
HOH
257
A
HOH
1053
6
HOH
HOH
258
A
HOH
1064
6
HOH
HOH
259
A
HOH
1065
6
HOH
HOH
260
A
HOH
1131
6
HOH
HOH
261
A
HOH
1139
6
HOH
HOH
262
A
HOH
1058
6
HOH
HOH
263
A
HOH
1150
6
HOH
HOH
264
A
HOH
1093
6
HOH
HOH
265
A
HOH
1142
6
HOH
HOH
266
A
HOH
1060
6
HOH
HOH
267
A
HOH
1069
6
HOH
HOH
268
A
HOH
1103
6
HOH
HOH
269
A
HOH
1101
6
HOH
HOH
1101
B
HOH
1098
6
HOH
HOH
1102
B
HOH
1094
6
HOH
HOH
1103
B
HOH
1055
6
HOH
HOH
1104
B
HOH
1057
6
HOH
HOH
1105
B
HOH
1030
6
HOH
HOH
1106
B
HOH
1118
6
HOH
HOH
1107
B
HOH
1089
6
HOH
HOH
1108
B
HOH
1029
6
HOH
HOH
1109
B
HOH
1008
6
HOH
HOH
1110
B
HOH
1095
6
HOH
HOH
1111
B
HOH
1071
6
HOH
HOH
1112
B
HOH
1007
6
HOH
HOH
1113
B
HOH
1120
6
HOH
HOH
1114
B
HOH
1041
6
HOH
HOH
1115
B
HOH
1059
6
HOH
HOH
1116
B
HOH
1076
6
HOH
HOH
1117
B
HOH
1015
6
HOH
HOH
1118
B
HOH
1111
6
HOH
HOH
1119
B
HOH
1107
6
HOH
HOH
1120
B
HOH
1027
6
HOH
HOH
1121
B
HOH
1096
6
HOH
HOH
1122
B
HOH
1056
6
HOH
HOH
1123
B
HOH
1001
6
HOH
HOH
1124
B
HOH
1125
6
HOH
HOH
1125
B
HOH
1042
6
HOH
HOH
1126
B
HOH
1082
6
HOH
HOH
1127
B
HOH
1033
6
HOH
HOH
1128
B
HOH
1017
6
HOH
HOH
1129
B
HOH
1062
6
HOH
HOH
1130
B
HOH
1021
6
HOH
HOH
1131
B
HOH
1012
6
HOH
HOH
1132
B
HOH
1146
6
HOH
HOH
1133
B
HOH
1063
6
HOH
HOH
1134
B
HOH
1105
6
HOH
HOH
1135
B
HOH
1110
6
HOH
HOH
1136
B
HOH
1048
6
HOH
HOH
1137
B
HOH
1108
6
HOH
HOH
1138
B
HOH
1023
6
HOH
HOH
1139
B
HOH
1034
6
HOH
HOH
1140
B
HOH
1031
6
HOH
HOH
1141
B
HOH
1117
6
HOH
HOH
1142
B
HOH
1051
6
HOH
HOH
1143
B
HOH
1054
6
HOH
HOH
1144
B
HOH
1115
6
HOH
HOH
1145
B
HOH
1004
6
HOH
HOH
1146
B
HOH
1124
6
HOH
HOH
1147
B
HOH
1090
6
HOH
HOH
1148
B
HOH
1044
6
HOH
HOH
1149
B
HOH
1024
6
HOH
HOH
1150
B
HOH
1129
6
HOH
HOH
1151
B
HOH
1087
6
HOH
HOH
1152
B
HOH
1137
6
HOH
HOH
1153
B
HOH
1036
6
HOH
HOH
1154
B
HOH
1084
6
HOH
HOH
1155
B
HOH
1122
6
HOH
HOH
1156
B
HOH
1149
6
HOH
HOH
1157
B
HOH
1145
6
HOH
HOH
1158
B
HOH
1140
6
HOH
HOH
1159
B
HOH
1121
6
HOH
HOH
1160
B
HOH
1135
6
HOH
HOH
1161
B
HOH
1106
6
HOH
HOH
1162
B
HOH
1092
6
HOH
HOH
1163
B
HOH
1078
6
HOH
HOH
1164
B
HOH
1109
6
HOH
HOH
1165
B
HOH
1100
6
HOH
HOH
1166
B
HOH
1052
6
HOH
HOH
1167
B
HOH
1127
6
HOH
HOH
1168
B
HOH
1097
6
HOH
HOH
1169
B
HOH
1079
6
HOH
HOH
1170
B
HOH
1040
6
HOH
HOH
1171
B
HOH
1138
6
HOH
HOH
1172
B
HOH
1136
6
HOH
HOH
1173
B
HOH
1045
6
HOH
HOH
1174
B
HOH
1141
6
HOH
HOH
1175
B
HOH
1144
6
HOH
HOH
1176
B
HOH
1050
6
HOH
HOH
1177
B
HOH
1119
6
HOH
HOH
1178
B
HOH
1147
6
HOH
HOH
1179
B
HOH
1080
6
HOH
HOH
1180
B
HOH
1112
6
HOH
HOH
1181
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
VAL
76
n
76
VAL
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
ILE
33
n
33
ILE
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
ALA
67
n
67
ALA
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
VAL
76
n
76
VAL
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
ALA
95
n
95
ALA
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
0.1862
0.2008
0.1841
0.1984
0.2220
0.2428
1070
1211
5.0
5.0
21410
author_and_software_defined_assembly
PISA
2
dimeric
none
5930
-85
9410
A
ASP
60
A
O
ASP
60
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
201
O
O
HOH
1_555
90.6
A
ASP
60
A
O
ASP
60
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
218
O
O
HOH
1_555
108.5
A
HOH
201
O
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
218
O
O
HOH
1_555
68.1
A
ASP
60
A
O
ASP
60
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
231
O
O
HOH
1_555
79.2
A
HOH
201
O
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
231
O
O
HOH
1_555
169.5
A
HOH
218
O
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
231
O
O
HOH
1_555
113.1
A
ASP
60
A
O
ASP
60
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
234
O
O
HOH
1_555
165.1
A
HOH
201
O
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
234
O
O
HOH
1_555
86.2
A
HOH
218
O
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
234
O
O
HOH
1_555
83.8
A
HOH
231
O
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
234
O
O
HOH
1_555
104.2
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
H
NA
NA
1_555
B
HOH
1123
P
O
HOH
1_555
106.5
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
H
NA
NA
1_555
B
HOH
1155
P
O
HOH
1_555
73.3
B
HOH
1123
P
O
HOH
1_555
B
NA
202
H
NA
NA
1_555
B
HOH
1155
P
O
HOH
1_555
112.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
ASN
98
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
VAL
76
A
O
VAL
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
43
B
N
LYS
43
B
O
GLN
58
B
O
GLN
58
B
N
ILE
64
B
N
ILE
64
B
O
ALA
71
B
O
ALA
71
B
O
VAL
76
B
O
VAL
76
B
N
ILE
33
B
N
ILE
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
LYS
14
B
N
LYS
14
B
O
GLU
65
B
O
GLU
65
1
3.15
0.50
120.30
123.45
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
0.2428
0.1984
0.2008
0.2008
1.75
32.00
1211
24254
24305
5.0
100.0
RANDOM
1
FREE R-VALUE
0.0
MOLECULAR REPLACEMENT
3NU3
27
0.00
1691.00
1.75
32.00
181
1733
42
0
1510
0.006
0.023
0.000
0.0269
0.036
0.047
0.008
0.000
0.064
0.000
1.75
50
6DJ5
24343
0.066
1
21.7
4.8
100.0
0.405
1.75
1.81
4.2
1
4.9
100.0
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
refinement
SHELXL-97
N
HIV-1 protease with mutation L76V in complex with GRL-0519 (tris-tetrahydrofuran as P2 ligand)
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
6
N
N
6
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
AA1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
AA2
3
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
AA3
6
metalc
2.367
A
ASP
60
A
O
ASP
60
1_555
A
NA
101
C
NA
NA
1_555
metalc
2.607
A
NA
101
C
NA
NA
1_555
A
HOH
201
O
O
HOH
1_555
metalc
2.269
A
NA
101
C
NA
NA
1_555
A
HOH
218
O
O
HOH
1_555
metalc
2.217
A
NA
101
C
NA
NA
1_555
A
HOH
231
O
O
HOH
1_555
metalc
3.119
A
NA
101
C
NA
NA
1_555
A
HOH
234
O
O
HOH
1_555
metalc
2.870
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
H
NA
NA
1_555
metalc
2.421
B
NA
202
H
NA
NA
1_555
B
HOH
1123
P
O
HOH
1_555
metalc
2.502
B
NA
202
H
NA
NA
1_555
B
HOH
1155
P
O
HOH
1_555
Hydrolase, Viral protein
Antiviral agents, HIV drug resistance, Hydrolase, Viral protein
Q5RZ08_9HIV1
UNP
1
1
Q5RZ08
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
1
99
6DJ5
1
99
Q5RZ08
A
1
1
99
1
99
6DJ5
1
99
Q5RZ08
B
1
1
99
1
GLN
engineered mutation
LYS
7
6DJ5
A
Q5RZ08
UNP
7
7
1
LEU
engineered mutation
ILE
33
6DJ5
A
Q5RZ08
UNP
33
33
1
LEU
engineered mutation
ILE
63
6DJ5
A
Q5RZ08
UNP
63
63
1
CYS
engineered mutation
ALA
67
6DJ5
A
Q5RZ08
UNP
67
67
1
LEU
engineered mutation
VAL
76
6DJ5
A
Q5RZ08
UNP
76
76
1
CYS
engineered mutation
ALA
95
6DJ5
A
Q5RZ08
UNP
95
95
2
GLN
engineered mutation
LYS
7
6DJ5
B
Q5RZ08
UNP
7
7
2
LEU
engineered mutation
ILE
33
6DJ5
B
Q5RZ08
UNP
33
33
2
LEU
engineered mutation
ILE
63
6DJ5
B
Q5RZ08
UNP
63
63
2
CYS
engineered mutation
ALA
67
6DJ5
B
Q5RZ08
UNP
67
67
2
LEU
engineered mutation
VAL
76
6DJ5
B
Q5RZ08
UNP
76
76
2
CYS
engineered mutation
ALA
95
6DJ5
B
Q5RZ08
UNP
95
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
VAL
32
A
VAL
32
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
ILE
33
B
ILE
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
binding site for residue NA A 101
A
NA
101
Software
4
binding site for residue CL A 102
A
CL
102
Software
3
binding site for residue GOL A 103
A
GOL
103
Software
7
binding site for residue GOL A 104
A
GOL
104
Software
6
binding site for residue G52 B 201
B
G52
201
Software
31
binding site for residue NA B 202
B
NA
202
Software
4
binding site for residue CL B 203
B
CL
203
Software
2
binding site for residue CL B 204
B
CL
204
Software
4
binding site for residue CL B 205
B
CL
205
Software
1
binding site for residue CL B 206
B
CL
206
Software
2
binding site for residue GOL B 207
B
GOL
207
Software
6
binding site for residue GOL B 208
B
GOL
208
Software
8
A
ASP
60
A
ASP
60
4
1_555
A
HOH
201
O
HOH
4
1_555
A
HOH
218
O
HOH
4
1_555
A
HOH
231
O
HOH
4
1_555
A
THR
74
A
THR
74
3
1_555
A
ASN
88
A
ASN
88
3
1_555
B
ARG
41
B
ARG
41
3
3_556
A
LYS
45
A
LYS
45
7
1_555
A
MET
46
A
MET
46
7
1_555
A
HOH
227
O
HOH
7
1_555
B
GLN
61
B
GLN
61
7
4_556
B
GLN
92
B
GLN
92
7
4_556
B
HOH
1118
P
HOH
7
4_556
B
HOH
1132
P
HOH
7
4_556
A
LYS
14
A
LYS
14
6
1_555
A
ILE
15
A
ILE
15
6
1_555
A
GLY
16
A
GLY
16
6
1_555
A
GLY
17
A
GLY
17
6
1_555
A
ILE
63
A
ILE
63
6
1_555
A
LYS
70
A
LYS
70
6
1_555
A
ARG
8
A
ARG
8
31
1_555
A
ASP
25
A
ASP
25
31
1_555
A
GLY
27
A
GLY
27
31
1_555
A
ALA
28
A
ALA
28
31
1_555
A
ASP
29
A
ASP
29
31
1_555
A
ASP
30
A
ASP
30
31
1_555
A
GLY
48
A
GLY
48
31
1_555
A
GLY
49
A
GLY
49
31
1_555
A
ILE
50
A
ILE
50
31
1_555
A
PRO
81
A
PRO
81
31
1_555
A
VAL
82
A
VAL
82
31
1_555
A
ILE
84
A
ILE
84
31
1_555
A
HOH
206
O
HOH
31
1_555
A
HOH
245
O
HOH
31
1_555
B
LEU
23
B
LEU
23
31
1_555
B
ASP
25
B
ASP
25
31
1_555
B
GLY
27
B
GLY
27
31
1_555
B
ALA
28
B
ALA
28
31
1_555
B
ASP
29
B
ASP
29
31
1_555
B
ASP
30
B
ASP
30
31
1_555
B
VAL
32
B
VAL
32
31
1_555
B
GLY
48
B
GLY
48
31
1_555
B
GLY
49
B
GLY
49
31
1_555
B
ILE
50
B
ILE
50
31
1_555
B
PRO
81
B
PRO
81
31
1_555
B
VAL
82
B
VAL
82
31
1_555
B
ILE
84
B
ILE
84
31
1_555
B
HOH
1102
P
HOH
31
1_555
B
HOH
1124
P
HOH
31
1_555
B
HOH
1142
P
HOH
31
1_555
B
HOH
1147
P
HOH
31
1_555
B
ASP
60
B
ASP
60
4
1_555
B
GOL
208
N
GOL
4
1_555
B
HOH
1123
P
HOH
4
1_555
B
HOH
1155
P
HOH
4
1_555
B
TRP
6
B
TRP
6
2
1_555
B
PRO
44
B
PRO
44
2
3_556
B
GLY
73
B
GLY
73
4
1_555
B
THR
74
B
THR
74
4
1_555
B
ASN
88
B
ASN
88
4
1_555
B
HOH
1131
P
HOH
4
1_555
B
THR
12
B
THR
12
1
1_555
B
LYS
7
B
LYS
7
2
1_555
B
ARG
8
B
ARG
8
2
1_555
A
TRP
6
A
TRP
6
6
1_555
B
ASP
29
B
ASP
29
6
1_555
B
ARG
87
B
ARG
87
6
1_555
B
ASN
88
B
ASN
88
6
1_555
B
HOH
1122
P
HOH
6
1_555
B
HOH
1133
P
HOH
6
1_555
B
ARG
41
B
ARG
41
8
1_555
B
LYS
43
B
LYS
43
8
1_555
B
GLN
58
B
GLN
58
8
1_555
B
TYR
59
B
TYR
59
8
1_555
B
ASP
60
B
ASP
60
8
1_555
B
NA
202
H
NA
8
1_555
B
HOH
1101
P
HOH
8
1_555
B
HOH
1123
P
HOH
8
1_555
18
P 21 21 2