0.008811
0.000000
0.006633
0.000000
0.021753
0.000000
0.000000
0.000000
0.015790
0.00000
0.00000
0.00000
Greasley, S.E.
Johnson, E.
Kraus, M.L.
Cronin, C.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
126.97
90.00
113.490
45.970
79.270
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C24 H23 F4 N5 O4
521.464
2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-5-(1-methyl-1H-imidazol-4-yl)pyridine-3-carboxamide
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
Y
88
N
C
N
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
N
93
R
C
N
94
N
C
N
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
N
Y
105
N
C
N
106
N
O
N
107
S
C
N
108
N
C
N
109
N
N
N
110
N
C
N
111
N
C
N
112
N
O
Y
113
N
C
Y
114
N
C
Y
115
N
C
N
116
N
O
N
117
N
C
N
118
N
F
N
119
N
F
N
120
N
F
N
121
N
F
N
122
N
C
N
123
N
N
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
Y
202
N
C
Y
203
N
N
Y
204
N
C
Y
205
N
C
Y
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
S
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
S
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
R
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
N
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
doub
N
99
N
doub
N
100
N
sing
Y
101
N
doub
Y
102
N
sing
N
103
N
doub
Y
104
N
doub
Y
105
N
sing
Y
106
N
doub
Y
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
doub
Y
111
N
sing
N
112
N
sing
N
113
N
sing
Y
114
N
sing
Y
115
N
doub
Y
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
Y
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
sing
Y
204
N
doub
Y
205
N
doub
N
206
N
sing
Y
207
N
sing
N
208
N
sing
Y
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
sing
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
61
6779
6800
10.1021/acs.jmedchem.8b00633
29944371
Discovery of Potent, Selective, and Peripherally Restricted Pan-Trk Kinase Inhibitors for the Treatment of Pain.
2018
0000-0003-0955-271X
10.2210/pdb6dkb/pdb
pdb_00006dkb
93
1
CCD
2014-05-17
RAYONIX MX-300
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
08ID-1
CLSI
1.0
SYNCHROTRON
CLSI BEAMLINE 08ID-1
36110.504
High affinity nerve growth factor receptor
2.7.10.1
1
man
polymer
521.464
2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-5-(1-methyl-1H-imidazol-4-yl)pyridine-3-carboxamide
1
syn
non-polymer
18.015
water
1
nat
water
Neurotrophic tyrosine kinase receptor type 1,TRK1-transforming tyrosine kinase protein,Tropomyosin-related kinase A,Tyrosine kinase receptor,Tyrosine kinase receptor A,Trk-A,gp140trk,p140-TrkA
no
no
GSTEGKGSGLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQD
FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAA
GMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVV
LWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVLG
GSTEGKGSGLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQD
FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAA
GMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVV
LWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVLG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
320
NTRK1, MTC, TRK, TRKA
9606
Homo sapiens
7108
Spodoptera frugiperda
pKRIC-N6
Biological sequence
1
2.29
46.23
VAPOR DIFFUSION, SITTING DROP
8.0
Well volume: 30.0 uL
Drop volume from well: 0.2 uL
Drop protein volume: 0.4 uL
Well Ingredients:
Polymer: 10.0 %w/v (6.0 uL of stock 50.0 %w/v) PEG 3350
Buffer: 16.0 %v/v (4.8 uL of stock 100.0 %v/v) tacsimate (pH 8.00)
Organic (non-volatile): 10.0 %v/v (3.0 uL of stock 100.0 %v/v) Ethylene glycol
Additive: 0.025 M (1.5 uL of stock 0.5 M) TCEP hydrochloride
Plate setup temperature: 13 C
Plate incubation temperature: 21 C
294
citation
citation_author
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Data collection
Database references
Data collection
Database references
1
0
2018-07-11
1
1
2018-08-15
1
2
2024-03-13
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_citation_author.identifier_ORCID
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
RCSB
2018-05-29
REL
REL
FKY
2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-5-(1-methyl-1H-imidazol-4-yl)pyridine-3-carboxamide
HOH
water
LIG
4000
2
FKY
FKY
4000
A
HOH
1
3
HOH
HOH
4101
A
n
1
477
A
n
2
478
A
n
3
479
A
n
4
480
A
n
5
481
A
n
6
482
A
n
7
483
A
n
8
484
A
n
9
485
A
n
10
486
A
n
11
487
A
n
12
488
A
n
13
489
A
n
14
490
A
n
15
491
A
n
16
492
A
n
17
493
A
n
18
494
A
n
19
495
A
n
20
496
A
n
21
497
A
n
22
498
A
n
23
499
A
n
24
500
A
CYS
501
n
25
CYS
501
A
VAL
502
n
26
VAL
502
A
HIS
503
n
27
HIS
503
A
HIS
504
n
28
HIS
504
A
ILE
505
n
29
ILE
505
A
LYS
506
n
30
LYS
506
A
ARG
507
n
31
ARG
507
A
ARG
508
n
32
ARG
508
A
ASP
509
n
33
ASP
509
A
ILE
510
n
34
ILE
510
A
VAL
511
n
35
VAL
511
A
LEU
512
n
36
LEU
512
A
LYS
513
n
37
LYS
513
A
TRP
514
n
38
TRP
514
A
GLU
515
n
39
GLU
515
A
LEU
516
n
40
LEU
516
A
GLY
517
n
41
GLY
517
A
GLU
518
n
42
GLU
518
A
GLY
519
n
43
GLY
519
A
ALA
520
n
44
ALA
520
A
PHE
521
n
45
PHE
521
A
GLY
522
n
46
GLY
522
A
LYS
523
n
47
LYS
523
A
VAL
524
n
48
VAL
524
A
PHE
525
n
49
PHE
525
A
LEU
526
n
50
LEU
526
A
ALA
527
n
51
ALA
527
A
GLU
528
n
52
GLU
528
A
CYS
529
n
53
CYS
529
A
HIS
530
n
54
HIS
530
A
ASN
531
n
55
ASN
531
A
LEU
532
n
56
LEU
532
A
LEU
533
n
57
LEU
533
A
PRO
534
n
58
PRO
534
A
GLU
535
n
59
GLU
535
A
GLN
536
n
60
GLN
536
A
ASP
537
n
61
ASP
537
A
LYS
538
n
62
LYS
538
A
MET
539
n
63
MET
539
A
LEU
540
n
64
LEU
540
A
VAL
541
n
65
VAL
541
A
ALA
542
n
66
ALA
542
A
VAL
543
n
67
VAL
543
A
LYS
544
n
68
LYS
544
A
ALA
545
n
69
ALA
545
A
LEU
546
n
70
LEU
546
A
LYS
547
n
71
LYS
547
A
GLU
548
n
72
GLU
548
A
ALA
549
n
73
ALA
549
A
SER
550
n
74
SER
550
A
GLU
551
n
75
GLU
551
A
SER
552
n
76
SER
552
A
ALA
553
n
77
ALA
553
A
ARG
554
n
78
ARG
554
A
GLN
555
n
79
GLN
555
A
ASP
556
n
80
ASP
556
A
PHE
557
n
81
PHE
557
A
GLN
558
n
82
GLN
558
A
ARG
559
n
83
ARG
559
A
GLU
560
n
84
GLU
560
A
ALA
561
n
85
ALA
561
A
GLU
562
n
86
GLU
562
A
LEU
563
n
87
LEU
563
A
LEU
564
n
88
LEU
564
A
THR
565
n
89
THR
565
A
MET
566
n
90
MET
566
A
LEU
567
n
91
LEU
567
A
GLN
568
n
92
GLN
568
A
HIS
569
n
93
HIS
569
A
GLN
570
n
94
GLN
570
A
HIS
571
n
95
HIS
571
A
ILE
572
n
96
ILE
572
A
VAL
573
n
97
VAL
573
A
ARG
574
n
98
ARG
574
A
PHE
575
n
99
PHE
575
A
PHE
576
n
100
PHE
576
A
GLY
577
n
101
GLY
577
A
VAL
578
n
102
VAL
578
A
CYS
579
n
103
CYS
579
A
THR
580
n
104
THR
580
A
GLU
581
n
105
GLU
581
A
GLY
582
n
106
GLY
582
A
ARG
583
n
107
ARG
583
A
PRO
584
n
108
PRO
584
A
LEU
585
n
109
LEU
585
A
LEU
586
n
110
LEU
586
A
MET
587
n
111
MET
587
A
VAL
588
n
112
VAL
588
A
PHE
589
n
113
PHE
589
A
GLU
590
n
114
GLU
590
A
TYR
591
n
115
TYR
591
A
MET
592
n
116
MET
592
A
ARG
593
n
117
ARG
593
A
HIS
594
n
118
HIS
594
A
GLY
595
n
119
GLY
595
A
ASP
596
n
120
ASP
596
A
LEU
597
n
121
LEU
597
A
ASN
598
n
122
ASN
598
A
ARG
599
n
123
ARG
599
A
PHE
600
n
124
PHE
600
A
LEU
601
n
125
LEU
601
A
ARG
602
n
126
ARG
602
A
SER
603
n
127
SER
603
A
HIS
604
n
128
HIS
604
A
GLY
605
n
129
GLY
605
A
PRO
606
n
130
PRO
606
A
n
131
607
A
n
132
608
A
n
133
609
A
n
134
610
A
n
135
611
A
n
136
612
A
n
137
613
A
n
138
614
A
n
139
615
A
n
140
616
A
n
141
617
A
n
142
618
A
n
143
619
A
GLY
620
n
144
GLY
620
A
PRO
621
n
145
PRO
621
A
LEU
622
n
146
LEU
622
A
GLY
623
n
147
GLY
623
A
LEU
624
n
148
LEU
624
A
GLY
625
n
149
GLY
625
A
GLN
626
n
150
GLN
626
A
LEU
627
n
151
LEU
627
A
LEU
628
n
152
LEU
628
A
ALA
629
n
153
ALA
629
A
VAL
630
n
154
VAL
630
A
ALA
631
n
155
ALA
631
A
SER
632
n
156
SER
632
A
GLN
633
n
157
GLN
633
A
VAL
634
n
158
VAL
634
A
ALA
635
n
159
ALA
635
A
ALA
636
n
160
ALA
636
A
GLY
637
n
161
GLY
637
A
MET
638
n
162
MET
638
A
VAL
639
n
163
VAL
639
A
TYR
640
n
164
TYR
640
A
LEU
641
n
165
LEU
641
A
ALA
642
n
166
ALA
642
A
GLY
643
n
167
GLY
643
A
LEU
644
n
168
LEU
644
A
HIS
645
n
169
HIS
645
A
PHE
646
n
170
PHE
646
A
VAL
647
n
171
VAL
647
A
HIS
648
n
172
HIS
648
A
ARG
649
n
173
ARG
649
A
ASP
650
n
174
ASP
650
A
LEU
651
n
175
LEU
651
A
ALA
652
n
176
ALA
652
A
THR
653
n
177
THR
653
A
ARG
654
n
178
ARG
654
A
ASN
655
n
179
ASN
655
A
CYS
656
n
180
CYS
656
A
LEU
657
n
181
LEU
657
A
VAL
658
n
182
VAL
658
A
GLY
659
n
183
GLY
659
A
GLN
660
n
184
GLN
660
A
GLY
661
n
185
GLY
661
A
LEU
662
n
186
LEU
662
A
VAL
663
n
187
VAL
663
A
VAL
664
n
188
VAL
664
A
LYS
665
n
189
LYS
665
A
ILE
666
n
190
ILE
666
A
GLY
667
n
191
GLY
667
A
ASP
668
n
192
ASP
668
A
PHE
669
n
193
PHE
669
A
GLY
670
n
194
GLY
670
A
n
195
671
A
n
196
672
A
n
197
673
A
n
198
674
A
n
199
675
A
n
200
676
A
SER
677
n
201
SER
677
A
THR
678
n
202
THR
678
A
ASP
679
n
203
ASP
679
A
TYR
680
n
204
TYR
680
A
TYR
681
n
205
TYR
681
A
ARG
682
n
206
ARG
682
A
n
207
683
A
n
208
684
A
n
209
685
A
n
210
686
A
n
211
687
A
MET
688
n
212
MET
688
A
LEU
689
n
213
LEU
689
A
PRO
690
n
214
PRO
690
A
ILE
691
n
215
ILE
691
A
ARG
692
n
216
ARG
692
A
TRP
693
n
217
TRP
693
A
MET
694
n
218
MET
694
A
PRO
695
n
219
PRO
695
A
PRO
696
n
220
PRO
696
A
GLU
697
n
221
GLU
697
A
SER
698
n
222
SER
698
A
ILE
699
n
223
ILE
699
A
LEU
700
n
224
LEU
700
A
TYR
701
n
225
TYR
701
A
ARG
702
n
226
ARG
702
A
LYS
703
n
227
LYS
703
A
PHE
704
n
228
PHE
704
A
THR
705
n
229
THR
705
A
THR
706
n
230
THR
706
A
GLU
707
n
231
GLU
707
A
SER
708
n
232
SER
708
A
ASP
709
n
233
ASP
709
A
VAL
710
n
234
VAL
710
A
TRP
711
n
235
TRP
711
A
SER
712
n
236
SER
712
A
PHE
713
n
237
PHE
713
A
GLY
714
n
238
GLY
714
A
VAL
715
n
239
VAL
715
A
VAL
716
n
240
VAL
716
A
LEU
717
n
241
LEU
717
A
TRP
718
n
242
TRP
718
A
GLU
719
n
243
GLU
719
A
ILE
720
n
244
ILE
720
A
PHE
721
n
245
PHE
721
A
THR
722
n
246
THR
722
A
TYR
723
n
247
TYR
723
A
GLY
724
n
248
GLY
724
A
LYS
725
n
249
LYS
725
A
GLN
726
n
250
GLN
726
A
PRO
727
n
251
PRO
727
A
TRP
728
n
252
TRP
728
A
TYR
729
n
253
TYR
729
A
GLN
730
n
254
GLN
730
A
LEU
731
n
255
LEU
731
A
SER
732
n
256
SER
732
A
ASN
733
n
257
ASN
733
A
THR
734
n
258
THR
734
A
GLU
735
n
259
GLU
735
A
ALA
736
n
260
ALA
736
A
ILE
737
n
261
ILE
737
A
ASP
738
n
262
ASP
738
A
CYS
739
n
263
CYS
739
A
ILE
740
n
264
ILE
740
A
THR
741
n
265
THR
741
A
GLN
742
n
266
GLN
742
A
GLY
743
n
267
GLY
743
A
ARG
744
n
268
ARG
744
A
GLU
745
n
269
GLU
745
A
LEU
746
n
270
LEU
746
A
GLU
747
n
271
GLU
747
A
ARG
748
n
272
ARG
748
A
PRO
749
n
273
PRO
749
A
ARG
750
n
274
ARG
750
A
ALA
751
n
275
ALA
751
A
CYS
752
n
276
CYS
752
A
PRO
753
n
277
PRO
753
A
PRO
754
n
278
PRO
754
A
GLU
755
n
279
GLU
755
A
VAL
756
n
280
VAL
756
A
TYR
757
n
281
TYR
757
A
ALA
758
n
282
ALA
758
A
ILE
759
n
283
ILE
759
A
MET
760
n
284
MET
760
A
ARG
761
n
285
ARG
761
A
GLY
762
n
286
GLY
762
A
CYS
763
n
287
CYS
763
A
TRP
764
n
288
TRP
764
A
GLN
765
n
289
GLN
765
A
ARG
766
n
290
ARG
766
A
GLU
767
n
291
GLU
767
A
PRO
768
n
292
PRO
768
A
GLN
769
n
293
GLN
769
A
GLN
770
n
294
GLN
770
A
ARG
771
n
295
ARG
771
A
HIS
772
n
296
HIS
772
A
SER
773
n
297
SER
773
A
ILE
774
n
298
ILE
774
A
LYS
775
n
299
LYS
775
A
ASP
776
n
300
ASP
776
A
VAL
777
n
301
VAL
777
A
HIS
778
n
302
HIS
778
A
ALA
779
n
303
ALA
779
A
ARG
780
n
304
ARG
780
A
LEU
781
n
305
LEU
781
A
GLN
782
n
306
GLN
782
A
ALA
783
n
307
ALA
783
A
LEU
784
n
308
LEU
784
A
ALA
785
n
309
ALA
785
A
GLN
786
n
310
GLN
786
A
ALA
787
n
311
ALA
787
A
PRO
788
n
312
PRO
788
A
PRO
789
n
313
PRO
789
A
VAL
790
n
314
VAL
790
A
TYR
791
n
315
TYR
791
A
LEU
792
n
316
LEU
792
A
ASP
793
n
317
ASP
793
A
VAL
794
n
318
VAL
794
A
LEU
795
n
319
LEU
795
A
GLY
796
n
320
GLY
796
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
0
0
14290
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
514
A
N
TRP
38
A
O
LEU
526
A
O
LEU
50
A
N
PHE
525
A
N
PHE
49
A
O
VAL
543
A
O
VAL
67
A
N
LYS
544
A
N
LYS
68
A
O
MET
587
A
O
MET
111
A
O
VAL
588
A
O
VAL
112
A
N
PHE
576
A
N
PHE
100
A
N
GLY
595
A
N
GLY
119
A
O
VAL
658
A
O
VAL
182
A
N
GLY
659
A
N
GLY
183
A
O
VAL
663
A
O
VAL
187
1
A
CG
ARG
682
A
CG
ARG
206
1
Y
1
A
CD
ARG
682
A
CD
ARG
206
1
Y
1
A
NE
ARG
682
A
NE
ARG
206
1
Y
1
A
CZ
ARG
682
A
CZ
ARG
206
1
Y
1
A
NH1
ARG
682
A
NH1
ARG
206
1
Y
1
A
NH2
ARG
682
A
NH2
ARG
206
1
Y
1
A
GLY
477
A
GLY
1
1
Y
1
A
SER
478
A
SER
2
1
Y
1
A
THR
479
A
THR
3
1
Y
1
A
GLU
480
A
GLU
4
1
Y
1
A
GLY
481
A
GLY
5
1
Y
1
A
LYS
482
A
LYS
6
1
Y
1
A
GLY
483
A
GLY
7
1
Y
1
A
SER
484
A
SER
8
1
Y
1
A
GLY
485
A
GLY
9
1
Y
1
A
LEU
486
A
LEU
10
1
Y
1
A
GLN
487
A
GLN
11
1
Y
1
A
GLY
488
A
GLY
12
1
Y
1
A
HIS
489
A
HIS
13
1
Y
1
A
ILE
490
A
ILE
14
1
Y
1
A
ILE
491
A
ILE
15
1
Y
1
A
GLU
492
A
GLU
16
1
Y
1
A
ASN
493
A
ASN
17
1
Y
1
A
PRO
494
A
PRO
18
1
Y
1
A
GLN
495
A
GLN
19
1
Y
1
A
TYR
496
A
TYR
20
1
Y
1
A
PHE
497
A
PHE
21
1
Y
1
A
SER
498
A
SER
22
1
Y
1
A
ASP
499
A
ASP
23
1
Y
1
A
ALA
500
A
ALA
24
1
Y
1
A
ASP
607
A
ASP
131
1
Y
1
A
ALA
608
A
ALA
132
1
Y
1
A
LYS
609
A
LYS
133
1
Y
1
A
LEU
610
A
LEU
134
1
Y
1
A
LEU
611
A
LEU
135
1
Y
1
A
ALA
612
A
ALA
136
1
Y
1
A
GLY
613
A
GLY
137
1
Y
1
A
GLY
614
A
GLY
138
1
Y
1
A
GLU
615
A
GLU
139
1
Y
1
A
ASP
616
A
ASP
140
1
Y
1
A
VAL
617
A
VAL
141
1
Y
1
A
ALA
618
A
ALA
142
1
Y
1
A
PRO
619
A
PRO
143
1
Y
1
A
MET
671
A
MET
195
1
Y
1
A
SER
672
A
SER
196
1
Y
1
A
ARG
673
A
ARG
197
1
Y
1
A
ASP
674
A
ASP
198
1
Y
1
A
ILE
675
A
ILE
199
1
Y
1
A
TYR
676
A
TYR
200
1
Y
1
A
VAL
683
A
VAL
207
1
Y
1
A
GLY
684
A
GLY
208
1
Y
1
A
GLY
685
A
GLY
209
1
Y
1
A
ARG
686
A
ARG
210
1
Y
1
A
THR
687
A
THR
211
1
Y
1
A
THR
580
-104.66
46.34
1
A
ARG
649
75.89
-18.83
1
A
ASP
668
-173.63
117.20
1
A
PHE
669
-89.02
-138.07
1
A
TRP
764
-108.20
52.61
80.37
4.3893
0.0000
7.9792
7.4142
0.0000
-11.8035
0.9317
0.9225
0.2450
0.2159
0.2173
2.68
41.00
441
9289
4.75
98.95
1.361
RANDOM
1
THROUGHOUT
0.0
1.037
0.311
0.321
2.68
41.00
1
2222
37
0
2184
0.009
2278
HARMONIC
2.00
1.03
3085
HARMONIC
2.00
789
SINUSOIDAL
2.00
49
HARMONIC
2.00
355
HARMONIC
5.00
2278
HARMONIC
20.00
2.80
18.36
273
SEMIHARMONIC
5.00
2476
SEMIHARMONIC
4.00
0.3052
0.2434
0.2464
3.00
118
2414
2532
5
4.66
98.95
83.99
2.68
50
6DKB
9290
0.081
1
15.61
3.7
99.9
2.68
2.78
1.64
3222
0.80
1
3.6
99.6
refinement
BUSTER
2.11.4
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
BUSTER
N
Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 10b.
1
N
N
2
N
N
3
N
N
A
LYS
506
A
LYS
30
HELX_P
A
ARG
508
A
ARG
32
5
AA1
3
A
SER
550
A
SER
74
HELX_P
A
LEU
567
A
LEU
91
1
AA2
18
A
LEU
597
A
LEU
121
HELX_P
A
HIS
604
A
HIS
128
1
AA3
8
A
GLY
623
A
GLY
147
HELX_P
A
LEU
644
A
LEU
168
1
AA4
22
A
ALA
652
A
ALA
176
HELX_P
A
ARG
654
A
ARG
178
5
AA5
3
A
PRO
690
A
PRO
214
HELX_P
A
MET
694
A
MET
218
5
AA6
5
A
PRO
695
A
PRO
219
HELX_P
A
ARG
702
A
ARG
226
1
AA7
8
A
THR
705
A
THR
229
HELX_P
A
THR
722
A
THR
246
1
AA8
18
A
SER
732
A
SER
256
HELX_P
A
GLN
742
A
GLN
266
1
AA9
11
A
PRO
753
A
PRO
277
HELX_P
A
TRP
764
A
TRP
288
1
AB1
12
A
GLU
767
A
GLU
291
HELX_P
A
ARG
771
A
ARG
295
5
AB2
5
A
SER
773
A
SER
297
HELX_P
A
ALA
787
A
ALA
311
1
AB3
15
TRANSFERASE/TRANSFERASE INHIBITOR
Inhibitor Tyrosine kinase, TRANSFERASE, pan-Trk Kinase, Treatment for pain, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
ARG
583
A
ARG
107
1
A
PRO
584
A
PRO
108
-1.20
NTRK1_HUMAN
UNP
1
381
P04629
P04629-4
TEGKGSGLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQ
REAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGM
VYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLW
EIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVLG
381
698
6DKB
479
796
P04629
A
1
3
320
1
expression tag
GLY
477
6DKB
A
P04629
UNP
1
1
expression tag
SER
478
6DKB
A
P04629
UNP
2
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
510
A
ILE
34
A
GLU
518
A
GLU
42
A
GLY
522
A
GLY
46
A
HIS
530
A
HIS
54
A
LYS
538
A
LYS
62
A
LEU
546
A
LEU
70
A
LEU
585
A
LEU
109
A
GLU
590
A
GLU
114
A
PHE
575
A
PHE
99
A
CYS
579
A
CYS
103
A
GLY
595
A
GLY
119
A
ASP
596
A
ASP
120
A
CYS
656
A
CYS
180
A
GLY
659
A
GLY
183
A
VAL
663
A
VAL
187
A
ILE
666
A
ILE
190
binding site for residue FKY A 4000
A
FKY
4000
Software
16
A
LEU
516
A
LEU
40
16
1_555
A
ALA
542
A
ALA
66
16
1_555
A
LEU
564
A
LEU
88
16
1_555
A
VAL
573
A
VAL
97
16
1_555
A
PHE
589
A
PHE
113
16
1_555
A
GLU
590
A
GLU
114
16
1_555
A
TYR
591
A
TYR
115
16
1_555
A
MET
592
A
MET
116
16
1_555
A
GLY
595
A
GLY
119
16
1_555
A
LEU
641
A
LEU
165
16
1_555
A
HIS
648
A
HIS
172
16
1_555
A
LEU
657
A
LEU
181
16
1_555
A
ILE
666
A
ILE
190
16
1_555
A
GLY
667
A
GLY
191
16
1_555
A
ASP
668
A
ASP
192
16
1_555
A
PHE
669
A
PHE
193
16
1_555
5
C 1 2 1