data_6DKZ # _entry.id 6DKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6DKZ WWPDB D_1000234833 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DKZ _pdbx_database_status.recvd_initial_deposition_date 2018-05-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, C.K.' 1 ? 'King, G.J.' 2 ? 'Ramalho, S.D.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Nat. Prod.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-6025 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 81 _citation.language ? _citation.page_first 2436 _citation.page_last 2445 _citation.title 'Synthesis, Racemic X-ray Crystallographic, and Permeability Studies of Bioactive Orbitides from Jatropha Species.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jnatprod.8b00447 _citation.pdbx_database_id_PubMed 30345754 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramalho, S.D.' 1 0000-0001-5314-4487 primary 'Wang, C.K.' 2 0000-0002-7973-7632 primary 'King, G.J.' 3 ? primary 'Byriel, K.A.' 4 ? primary 'Huang, Y.H.' 5 0000-0001-6937-2660 primary 'Bolzani, V.S.' 6 0000-0001-7019-5825 primary 'Craik, D.J.' 7 0000-0003-0007-6796 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 91.70 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DKZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 14.061 _cell.length_a_esd ? _cell.length_b 19.862 _cell.length_b_esd ? _cell.length_c 18.632 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21/n 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ribifolin 784.986 1 ? ? ? ? 2 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SIILGILG _entity_poly.pdbx_seq_one_letter_code_can SIILGILG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 ILE n 1 4 LEU n 1 5 GLY n 1 6 ILE n 1 7 LEU n 1 8 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Jatropha ribifolia' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 3995 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DKZ _struct_ref.pdbx_db_accession 6DKZ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DKZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DKZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DKZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'in 0.1 M Tris base (pH 8.0) and 40% 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9537 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9537 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DKZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.99 _reflns.d_resolution_low 19.86 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5474 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.99 _reflns_shell.d_res_low 1.01 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DKZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.990 _refine.ls_d_res_low 11.473 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5291 _refine.ls_number_reflns_R_free 519 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.23 _refine.ls_percent_reflns_R_free 9.81 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1727 _refine.ls_R_factor_R_free 0.1739 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1725 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.42 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 13.10 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.04 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 54 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 56 _refine_hist.d_res_high 0.990 _refine_hist.d_res_low 11.473 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 53 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.046 ? 70 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 10.290 ? 18 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.089 ? 11 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 7 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.9898 1.0893 . . 130 1142 90.00 . . . 0.1721 . 0.1553 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0893 1.2467 . . 120 1186 93.00 . . . 0.1731 . 0.1427 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2467 1.5701 . . 133 1223 97.00 . . . 0.1639 . 0.1670 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5701 11.4737 . . 136 1221 97.00 . . . 0.1798 . 0.1956 . . . . . . . . . . # _struct.entry_id 6DKZ _struct.title 'Racemic structure of ribifolin, an orbitide from Jatropha ribifolia' _struct.pdbx_descriptor 'DIL-DLE-GLY-DSN-DIL-DIL-DLE-GLY, ILE-LEU-GLY-SER-ILE-ILE-LEU-GLY' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DKZ _struct_keywords.text 'cyclic peptide, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 8 _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 8 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.332 _struct_conn.pdbx_value_order sing # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6DKZ _atom_sites.fract_transf_matrix[1][1] 0.071119 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002110 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.050347 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.053695 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . SER A 1 1 ? 4.455 0.666 7.439 1.00 2.09 ? 1 SER A N 1 ATOM 2 C CA . SER A 1 1 ? 4.499 -0.562 8.224 1.00 1.90 ? 1 SER A CA 1 ATOM 3 C C . SER A 1 1 ? 5.087 -1.710 7.406 1.00 1.89 ? 1 SER A C 1 ATOM 4 O O . SER A 1 1 ? 4.562 -2.074 6.346 1.00 2.23 ? 1 SER A O 1 ATOM 5 C CB . SER A 1 1 ? 3.085 -0.934 8.685 1.00 2.08 ? 1 SER A CB 1 ATOM 6 O OG . SER A 1 1 ? 3.004 -2.286 9.094 1.00 1.97 ? 1 SER A OG 1 ATOM 7 H H1 . SER A 1 1 ? 3.727 0.767 6.993 1.00 2.51 ? 1 SER A H1 1 ATOM 8 H HA . SER A 1 1 ? 5.053 -0.426 9.008 1.00 2.28 ? 1 SER A HA 1 ATOM 9 H HB2 . SER A 1 1 ? 2.841 -0.366 9.433 1.00 2.49 ? 1 SER A HB2 1 ATOM 10 H HB3 . SER A 1 1 ? 2.469 -0.792 7.950 1.00 2.49 ? 1 SER A HB3 1 ATOM 11 H HG . SER A 1 1 ? 3.531 -2.425 9.733 1.00 2.37 ? 1 SER A HG 1 ATOM 12 N N . ILE A 1 2 ? 6.163 -2.292 7.927 1.00 1.90 ? 2 ILE A N 1 ATOM 13 C CA . ILE A 1 2 ? 6.783 -3.452 7.316 1.00 2.08 ? 2 ILE A CA 1 ATOM 14 C C . ILE A 1 2 ? 5.820 -4.650 7.300 1.00 2.07 ? 2 ILE A C 1 ATOM 15 O O . ILE A 1 2 ? 5.807 -5.410 6.330 1.00 2.51 ? 2 ILE A O 1 ATOM 16 C CB . ILE A 1 2 ? 8.113 -3.784 8.052 1.00 2.59 ? 2 ILE A CB 1 ATOM 17 C CG1 . ILE A 1 2 ? 9.146 -2.668 7.806 1.00 3.14 ? 2 ILE A CG1 1 ATOM 18 C CG2 . ILE A 1 2 ? 8.665 -5.149 7.641 1.00 3.42 ? 2 ILE A CG2 1 ATOM 19 C CD1 . ILE A 1 2 ? 9.663 -2.581 6.382 1.00 4.17 ? 2 ILE A CD1 1 ATOM 20 H H . ILE A 1 2 ? 6.555 -2.027 8.644 1.00 2.28 ? 2 ILE A H 1 ATOM 21 H HA . ILE A 1 2 ? 7.001 -3.238 6.396 1.00 2.50 ? 2 ILE A HA 1 ATOM 22 H HB . ILE A 1 2 ? 7.928 -3.813 9.004 1.00 3.10 ? 2 ILE A HB 1 ATOM 23 H HG12 . ILE A 1 2 ? 8.736 -1.815 8.021 1.00 3.77 ? 2 ILE A HG12 1 ATOM 24 H HG13 . ILE A 1 2 ? 9.908 -2.819 8.386 1.00 3.77 ? 2 ILE A HG13 1 ATOM 25 H HG21 . ILE A 1 2 ? 9.492 -5.312 8.122 1.00 4.10 ? 2 ILE A HG21 1 ATOM 26 H HG22 . ILE A 1 2 ? 8.013 -5.832 7.861 1.00 4.10 ? 2 ILE A HG22 1 ATOM 27 H HG23 . ILE A 1 2 ? 8.834 -5.146 6.686 1.00 4.10 ? 2 ILE A HG23 1 ATOM 28 H HD11 . ILE A 1 2 ? 10.303 -1.855 6.324 1.00 5.01 ? 2 ILE A HD11 1 ATOM 29 H HD12 . ILE A 1 2 ? 10.091 -3.420 6.151 1.00 5.01 ? 2 ILE A HD12 1 ATOM 30 H HD13 . ILE A 1 2 ? 8.917 -2.414 5.785 1.00 5.01 ? 2 ILE A HD13 1 ATOM 31 N N . ILE A 1 3 ? 5.018 -4.835 8.346 1.00 1.87 ? 3 ILE A N 1 ATOM 32 C CA . ILE A 1 3 ? 4.061 -5.944 8.350 1.00 1.99 ? 3 ILE A CA 1 ATOM 33 C C . ILE A 1 3 ? 2.958 -5.749 7.291 1.00 2.07 ? 3 ILE A C 1 ATOM 34 O O . ILE A 1 3 ? 2.630 -6.682 6.547 1.00 2.44 ? 3 ILE A O 1 ATOM 35 C CB . ILE A 1 3 ? 3.462 -6.176 9.760 1.00 2.53 ? 3 ILE A CB 1 ATOM 36 C CG1 . ILE A 1 3 ? 4.560 -6.667 10.706 1.00 3.02 ? 3 ILE A CG1 1 ATOM 37 C CG2 . ILE A 1 3 ? 2.316 -7.174 9.696 1.00 3.23 ? 3 ILE A CG2 1 ATOM 38 C CD1 . ILE A 1 3 ? 4.121 -6.848 12.151 1.00 3.72 ? 3 ILE A CD1 1 ATOM 39 H H . ILE A 1 3 ? 5.005 -4.345 9.053 1.00 2.24 ? 3 ILE A H 1 ATOM 40 H HA . ILE A 1 3 ? 4.541 -6.752 8.112 1.00 2.39 ? 3 ILE A HA 1 ATOM 41 H HB . ILE A 1 3 ? 3.120 -5.332 10.094 1.00 3.04 ? 3 ILE A HB 1 ATOM 42 H HG12 . ILE A 1 3 ? 4.883 -7.525 10.388 1.00 3.62 ? 3 ILE A HG12 1 ATOM 43 H HG13 . ILE A 1 3 ? 5.286 -6.023 10.699 1.00 3.62 ? 3 ILE A HG13 1 ATOM 44 H HG21 . ILE A 1 3 ? 1.959 -7.302 10.589 1.00 3.87 ? 3 ILE A HG21 1 ATOM 45 H HG22 . ILE A 1 3 ? 1.626 -6.825 9.110 1.00 3.87 ? 3 ILE A HG22 1 ATOM 46 H HG23 . ILE A 1 3 ? 2.651 -8.016 9.349 1.00 3.87 ? 3 ILE A HG23 1 ATOM 47 H HD11 . ILE A 1 3 ? 4.877 -7.159 12.673 1.00 4.46 ? 3 ILE A HD11 1 ATOM 48 H HD12 . ILE A 1 3 ? 3.809 -5.997 12.495 1.00 4.46 ? 3 ILE A HD12 1 ATOM 49 H HD13 . ILE A 1 3 ? 3.405 -7.501 12.183 1.00 4.46 ? 3 ILE A HD13 1 ATOM 50 N N . LEU A 1 4 ? 2.397 -4.541 7.211 1.00 2.00 ? 4 LEU A N 1 ATOM 51 C CA . LEU A 1 4 ? 1.264 -4.291 6.314 1.00 2.42 ? 4 LEU A CA 1 ATOM 52 C C . LEU A 1 4 ? 1.654 -4.078 4.855 1.00 2.49 ? 4 LEU A C 1 ATOM 53 O O . LEU A 1 4 ? 0.836 -4.300 3.958 1.00 2.85 ? 4 LEU A O 1 ATOM 54 C CB . LEU A 1 4 ? 0.469 -3.061 6.761 1.00 2.78 ? 4 LEU A CB 1 ATOM 55 C CG . LEU A 1 4 ? -0.247 -3.135 8.108 1.00 3.44 ? 4 LEU A CG 1 ATOM 56 C CD1 . LEU A 1 4 ? -0.948 -1.828 8.400 1.00 4.05 ? 4 LEU A CD1 1 ATOM 57 C CD2 . LEU A 1 4 ? -1.243 -4.304 8.150 1.00 4.08 ? 4 LEU A CD2 1 ATOM 58 H H . LEU A 1 4 ? 2.650 -3.854 7.663 1.00 2.40 ? 4 LEU A H 1 ATOM 59 H HA . LEU A 1 4 ? 0.668 -5.055 6.350 1.00 2.91 ? 4 LEU A HA 1 ATOM 60 H HB2 . LEU A 1 4 ? 1.081 -2.310 6.805 1.00 3.33 ? 4 LEU A HB2 1 ATOM 61 H HB3 . LEU A 1 4 ? -0.207 -2.881 6.089 1.00 3.33 ? 4 LEU A HB3 1 ATOM 62 H HG . LEU A 1 4 ? 0.411 -3.282 8.805 1.00 4.13 ? 4 LEU A HG 1 ATOM 63 H HD11 . LEU A 1 4 ? -1.396 -1.895 9.257 1.00 4.86 ? 4 LEU A HD11 1 ATOM 64 H HD12 . LEU A 1 4 ? -0.290 -1.116 8.425 1.00 4.86 ? 4 LEU A HD12 1 ATOM 65 H HD13 . LEU A 1 4 ? -1.597 -1.655 7.700 1.00 4.86 ? 4 LEU A HD13 1 ATOM 66 H HD21 . LEU A 1 4 ? -1.676 -4.318 9.017 1.00 4.90 ? 4 LEU A HD21 1 ATOM 67 H HD22 . LEU A 1 4 ? -1.904 -4.180 7.451 1.00 4.90 ? 4 LEU A HD22 1 ATOM 68 H HD23 . LEU A 1 4 ? -0.761 -5.134 8.006 1.00 4.90 ? 4 LEU A HD23 1 ATOM 69 N N . GLY A 1 5 ? 2.869 -3.593 4.612 1.00 2.67 ? 5 GLY A N 1 ATOM 70 C CA . GLY A 1 5 ? 3.270 -3.190 3.275 1.00 3.20 ? 5 GLY A CA 1 ATOM 71 C C . GLY A 1 5 ? 2.695 -1.854 2.848 1.00 4.50 ? 5 GLY A C 1 ATOM 72 O O . GLY A 1 5 ? 2.675 -1.544 1.658 1.00 6.35 ? 5 GLY A O 1 ATOM 73 H H . GLY A 1 5 ? 3.479 -3.488 5.209 1.00 3.20 ? 5 GLY A H 1 ATOM 74 H HA2 . GLY A 1 5 ? 4.237 -3.131 3.237 1.00 3.84 ? 5 GLY A HA2 1 ATOM 75 H HA3 . GLY A 1 5 ? 2.981 -3.863 2.639 1.00 3.84 ? 5 GLY A HA3 1 ATOM 76 N N . ILE A 1 6 ? 2.192 -1.038 3.777 1.00 3.13 ? 6 ILE A N 1 ATOM 77 C CA . ILE A 1 6 ? 1.625 0.267 3.491 1.00 3.46 ? 6 ILE A CA 1 ATOM 78 C C . ILE A 1 6 ? 1.777 1.114 4.763 1.00 2.45 ? 6 ILE A C 1 ATOM 79 O O . ILE A 1 6 ? 2.015 0.576 5.852 1.00 2.38 ? 6 ILE A O 1 ATOM 80 C CB . ILE A 1 6 ? 0.131 0.115 3.065 1.00 5.44 ? 6 ILE A CB 1 ATOM 81 C CG1 . ILE A 1 6 ? -0.325 1.269 2.171 1.00 6.87 ? 6 ILE A CG1 1 ATOM 82 C CG2 . ILE A 1 6 ? -0.786 -0.059 4.285 1.00 5.50 ? 6 ILE A CG2 1 ATOM 83 C CD1 . ILE A 1 6 ? -1.656 1.019 1.494 1.00 7.91 ? 6 ILE A CD1 1 ATOM 84 H HA . ILE A 1 6 ? 2.117 0.690 2.770 1.00 4.15 ? 6 ILE A HA 1 ATOM 85 H HB . ILE A 1 6 ? 0.064 -0.697 2.540 1.00 6.53 ? 6 ILE A HB 1 ATOM 86 H HG12 . ILE A 1 6 ? -0.411 2.069 2.711 1.00 8.24 ? 6 ILE A HG12 1 ATOM 87 H HG13 . ILE A 1 6 ? 0.339 1.409 1.478 1.00 8.24 ? 6 ILE A HG13 1 ATOM 88 H HG21 . ILE A 1 6 ? -1.703 -0.149 3.980 1.00 6.60 ? 6 ILE A HG21 1 ATOM 89 H HG22 . ILE A 1 6 ? -0.518 -0.855 4.770 1.00 6.60 ? 6 ILE A HG22 1 ATOM 90 H HG23 . ILE A 1 6 ? -0.703 0.721 4.856 1.00 6.60 ? 6 ILE A HG23 1 ATOM 91 H HD11 . ILE A 1 6 ? -1.880 1.788 0.947 1.00 9.50 ? 6 ILE A HD11 1 ATOM 92 H HD12 . ILE A 1 6 ? -1.584 0.227 0.940 1.00 9.50 ? 6 ILE A HD12 1 ATOM 93 H HD13 . ILE A 1 6 ? -2.335 0.888 2.174 1.00 9.50 ? 6 ILE A HD13 1 ATOM 94 N N . LEU A 1 7 ? 1.645 2.431 4.606 1.00 2.17 ? 7 LEU A N 1 ATOM 95 C CA . LEU A 1 7 ? 1.659 3.375 5.723 1.00 2.34 ? 7 LEU A CA 1 ATOM 96 C C . LEU A 1 7 ? 2.941 3.260 6.553 1.00 2.37 ? 7 LEU A C 1 ATOM 97 O O . LEU A 1 7 ? 2.956 3.518 7.759 1.00 2.98 ? 7 LEU A O 1 ATOM 98 C CB . LEU A 1 7 ? 0.393 3.241 6.576 1.00 3.01 ? 7 LEU A CB 1 ATOM 99 C CG . LEU A 1 7 ? -0.863 3.790 5.878 1.00 4.03 ? 7 LEU A CG 1 ATOM 100 C CD1 . LEU A 1 7 ? -2.120 3.295 6.557 1.00 4.94 ? 7 LEU A CD1 1 ATOM 101 C CD2 . LEU A 1 7 ? -0.851 5.325 5.846 1.00 4.34 ? 7 LEU A CD2 1 ATOM 102 H H . LEU A 1 7 ? 1.543 2.811 3.841 1.00 2.60 ? 7 LEU A H 1 ATOM 103 H HA . LEU A 1 7 ? 1.649 4.271 5.351 1.00 2.81 ? 7 LEU A HA 1 ATOM 104 H HB2 . LEU A 1 7 ? 0.242 2.303 6.770 1.00 3.62 ? 7 LEU A HB2 1 ATOM 105 H HB3 . LEU A 1 7 ? 0.516 3.734 7.402 1.00 3.62 ? 7 LEU A HB3 1 ATOM 106 H HG . LEU A 1 7 ? -0.876 3.473 4.962 1.00 4.83 ? 7 LEU A HG 1 ATOM 107 H HD11 . LEU A 1 7 ? -2.892 3.658 6.094 1.00 5.93 ? 7 LEU A HD11 1 ATOM 108 H HD12 . LEU A 1 7 ? -2.138 2.326 6.520 1.00 5.93 ? 7 LEU A HD12 1 ATOM 109 H HD13 . LEU A 1 7 ? -2.118 3.592 7.480 1.00 5.93 ? 7 LEU A HD13 1 ATOM 110 H HD21 . LEU A 1 7 ? -1.654 5.637 5.401 1.00 5.21 ? 7 LEU A HD21 1 ATOM 111 H HD22 . LEU A 1 7 ? -0.825 5.659 6.756 1.00 5.21 ? 7 LEU A HD22 1 ATOM 112 H HD23 . LEU A 1 7 ? -0.066 5.623 5.361 1.00 5.21 ? 7 LEU A HD23 1 ATOM 113 N N . GLY A 1 8 ? 4.030 2.897 5.885 1.00 2.19 ? 8 GLY A N 1 ATOM 114 C CA . GLY A 1 8 ? 5.315 2.770 6.545 1.00 2.23 ? 8 GLY A CA 1 ATOM 115 C C . GLY A 1 8 ? 5.462 1.538 7.430 1.00 1.90 ? 8 GLY A C 1 ATOM 116 O O . GLY A 1 8 ? 6.495 1.378 8.092 1.00 2.20 ? 8 GLY A O 1 ATOM 117 H H . GLY A 1 8 ? 4.048 2.718 5.044 1.00 2.63 ? 8 GLY A H 1 ATOM 118 H HA2 . GLY A 1 8 ? 6.013 2.739 5.871 1.00 2.67 ? 8 GLY A HA2 1 ATOM 119 H HA3 . GLY A 1 8 ? 5.464 3.554 7.096 1.00 2.67 ? 8 GLY A HA3 1 HETATM 120 O O . HOH B 2 . ? 4.893 -3.095 10.885 1.00 2.52 ? 101 HOH A O 1 HETATM 121 O O . HOH B 2 . ? -1.521 -5.909 4.194 1.00 3.97 ? 102 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . SER A 1 ? 0.0323 0.0199 0.0272 -0.0026 -0.0007 0.0032 1 SER A N 2 C CA . SER A 1 ? 0.0296 0.0192 0.0233 -0.0025 -0.0002 0.0039 1 SER A CA 3 C C . SER A 1 ? 0.0285 0.0197 0.0237 -0.0032 0.0024 0.0037 1 SER A C 4 O O . SER A 1 ? 0.0323 0.0256 0.0270 0.0006 0.0019 0.0009 1 SER A O 5 C CB . SER A 1 ? 0.0316 0.0210 0.0263 -0.0002 0.0036 0.0029 1 SER A CB 6 O OG . SER A 1 ? 0.0297 0.0220 0.0232 -0.0022 0.0036 0.0044 1 SER A OG 12 N N . ILE A 2 ? 0.0267 0.0193 0.0263 -0.0030 0.0024 -0.0006 2 ILE A N 13 C CA . ILE A 2 ? 0.0279 0.0234 0.0279 -0.0001 0.0054 -0.0026 2 ILE A CA 14 C C . ILE A 2 ? 0.0328 0.0205 0.0254 0.0018 0.0040 -0.0035 2 ILE A C 15 O O . ILE A 2 ? 0.0394 0.0252 0.0307 -0.0050 0.0090 -0.0088 2 ILE A O 16 C CB . ILE A 2 ? 0.0275 0.0346 0.0362 0.0021 0.0003 -0.0022 2 ILE A CB 17 C CG1 . ILE A 2 ? 0.0306 0.0509 0.0379 -0.0071 0.0003 0.0021 2 ILE A CG1 18 C CG2 . ILE A 2 ? 0.0359 0.0409 0.0532 0.0101 -0.0007 -0.0066 2 ILE A CG2 19 C CD1 . ILE A 2 ? 0.0421 0.0738 0.0426 -0.0216 0.0028 0.0051 2 ILE A CD1 31 N N . ILE A 3 ? 0.0302 0.0171 0.0237 0.0000 0.0053 -0.0045 3 ILE A N 32 C CA . ILE A 3 ? 0.0304 0.0183 0.0271 0.0008 0.0096 0.0005 3 ILE A CA 33 C C . ILE A 3 ? 0.0315 0.0198 0.0272 -0.0018 0.0082 -0.0014 3 ILE A C 34 O O . ILE A 3 ? 0.0396 0.0204 0.0327 -0.0044 0.0042 -0.0070 3 ILE A O 35 C CB . ILE A 3 ? 0.0411 0.0248 0.0303 -0.0044 0.0089 0.0016 3 ILE A CB 36 C CG1 . ILE A 3 ? 0.0492 0.0292 0.0362 0.0033 0.0048 0.0027 3 ILE A CG1 37 C CG2 . ILE A 3 ? 0.0521 0.0357 0.0348 -0.0134 0.0112 0.0007 3 ILE A CG2 38 C CD1 . ILE A 3 ? 0.0628 0.0383 0.0402 0.0013 0.0017 0.0060 3 ILE A CD1 50 N N . LEU A 4 ? 0.0271 0.0221 0.0269 -0.0016 0.0029 -0.0043 4 LEU A N 51 C CA . LEU A 4 ? 0.0310 0.0282 0.0329 -0.0001 0.0002 -0.0061 4 LEU A CA 52 C C . LEU A 4 ? 0.0336 0.0267 0.0344 0.0022 -0.0043 -0.0067 4 LEU A C 53 O O . LEU A 4 ? 0.0394 0.0319 0.0368 0.0023 -0.0062 -0.0102 4 LEU A O 54 C CB . LEU A 4 ? 0.0303 0.0387 0.0365 0.0031 0.0001 -0.0095 4 LEU A CB 55 C CG . LEU A 4 ? 0.0339 0.0556 0.0411 0.0071 0.0000 -0.0138 4 LEU A CG 56 C CD1 . LEU A 4 ? 0.0437 0.0639 0.0463 0.0120 0.0001 -0.0173 4 LEU A CD1 57 C CD2 . LEU A 4 ? 0.0404 0.0666 0.0480 0.0028 0.0155 -0.0117 4 LEU A CD2 69 N N . GLY A 5 ? 0.0395 0.0311 0.0307 0.0026 -0.0013 -0.0058 5 GLY A N 70 C CA . GLY A 5 ? 0.0577 0.0366 0.0274 0.0051 0.0040 -0.0045 5 GLY A CA 71 C C . GLY A 5 ? 0.0916 0.0497 0.0298 0.0199 0.0033 -0.0031 5 GLY A C 72 O O . GLY A 5 ? 0.1342 0.0690 0.0380 0.0324 0.0061 -0.0016 5 GLY A O 76 N N . ILE A 6 ? 0.0532 0.0277 0.0381 -0.0013 -0.0004 -0.0009 6 ILE A N 77 C CA . ILE A 6 ? 0.0536 0.0353 0.0424 0.0040 -0.0112 -0.0010 6 ILE A CA 78 C C . ILE A 6 ? 0.0356 0.0276 0.0299 0.0015 -0.0017 0.0048 6 ILE A C 79 O O . ILE A 6 ? 0.0357 0.0277 0.0269 -0.0030 0.0016 0.0084 6 ILE A O 80 C CB . ILE A 6 ? 0.0788 0.0584 0.0696 0.0075 -0.0318 -0.0056 6 ILE A CB 81 C CG1 . ILE A 6 ? 0.1071 0.0714 0.0824 0.0056 -0.0401 -0.0020 6 ILE A CG1 82 C CG2 . ILE A 6 ? 0.0632 0.0584 0.0873 -0.0023 -0.0309 -0.0037 6 ILE A CG2 83 C CD1 . ILE A 6 ? 0.1222 0.0832 0.0953 0.0008 -0.0456 0.0023 6 ILE A CD1 94 N N . LEU A 7 ? 0.0338 0.0242 0.0244 0.0015 0.0028 0.0072 7 LEU A N 95 C CA . LEU A 7 ? 0.0335 0.0306 0.0248 0.0069 0.0090 0.0044 7 LEU A CA 96 C C . LEU A 7 ? 0.0368 0.0257 0.0274 0.0041 0.0084 0.0059 7 LEU A C 97 O O . LEU A 7 ? 0.0452 0.0367 0.0314 0.0067 0.0039 -0.0023 7 LEU A O 98 C CB . LEU A 7 ? 0.0360 0.0499 0.0285 0.0089 0.0120 0.0032 7 LEU A CB 99 C CG . LEU A 7 ? 0.0434 0.0705 0.0391 0.0106 0.0100 0.0051 7 LEU A CG 100 C CD1 . LEU A 7 ? 0.0519 0.0836 0.0523 0.0062 0.0131 0.0058 7 LEU A CD1 101 C CD2 . LEU A 7 ? 0.0484 0.0716 0.0448 0.0238 0.0128 0.0078 7 LEU A CD2 113 N N . GLY A 8 ? 0.0344 0.0220 0.0268 -0.0002 0.0021 0.0050 8 GLY A N 114 C CA . GLY A 8 ? 0.0329 0.0239 0.0278 -0.0027 0.0016 0.0043 8 GLY A CA 115 C C . GLY A 8 ? 0.0279 0.0202 0.0242 -0.0026 0.0031 0.0016 8 GLY A C 116 O O . GLY A 8 ? 0.0326 0.0210 0.0298 -0.0036 0.0011 0.0042 8 GLY A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH A . B 2 HOH 2 102 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 940 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2018-12-05 3 'Structure model' 1 2 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2142: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Sao Paulo Research Foundation (FAPESP)' Brazil '#2016/13148-4' 1 'Australian Research Council (ARC)' Australia FL150100146 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #