0.012259 0.000000 0.001335 0.000000 0.026393 0.000000 0.000000 0.000000 0.016160 0.000000 0.000000 0.000000 Samara, N.L. Yang, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 96.220 90.000 81.574 37.889 62.247 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 N C N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N N Y 164 N N Y 165 N C Y 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C N 194 N N N 195 N C N 196 N O N 197 N N N 198 N C N 199 N N N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N P N 218 N O N 219 N O N 220 N O N 221 N C N 222 R C N 223 N O N 224 S C N 225 N O N 226 N C N 227 R C Y 228 N N Y 229 N C Y 230 N N Y 231 N C N 232 N C N 233 N O N 234 N N N 235 N C N 236 N N N 237 N N Y 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N O N 254 N P N 255 N O N 256 N O N 257 N O N 258 N C N 259 R C N 260 N O N 261 S C N 262 N O N 263 N C N 264 R C N 265 N N N 266 N C N 267 N O N 268 N N N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N C N 290 N O N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N O N 300 N P N 301 N O N 302 N O N 303 N O N 304 N C N 305 R C N 306 N O N 307 S C N 308 N O N 309 R C N 310 N O N 311 R C Y 312 N N Y 313 N C Y 314 N N Y 315 N C N 316 N C N 317 N O N 318 N N N 319 N C N 320 N N N 321 N N Y 322 N C N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N C N 344 N O N 345 N N N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N C N 363 N C N 364 N O N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 N C N 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N C N 387 N O N 388 N C N 389 N O N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C Y 405 N C Y 406 N N Y 407 N C Y 408 N C Y 409 N N N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N O N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 S C N 429 N C N 430 N C N 431 N C N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N I N 447 N K N 448 N N N 449 S C N 450 N C N 451 N O N 452 N C N 453 N C N 454 N C N 455 N C N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 N C N 475 N C N 476 N C N 477 N C N 478 N N N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N N N 496 S C N 497 N C N 498 N O N 499 N C N 500 N C N 501 N S N 502 N C N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N MG N 516 N C N 517 N O N 518 N C N 519 N O N 520 N C N 521 N C N 522 N O N 523 N C N 524 N C N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N N N 541 S C N 542 N C N 543 N O N 544 N C Y 545 N C Y 546 N C Y 547 N C Y 548 N C Y 549 N C Y 550 N C N 551 N O N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N N N 564 S C N 565 N C N 566 N O N 567 N C N 568 N C N 569 N C N 570 N O N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N N N 581 S C N 582 N C N 583 N O N 584 N C N 585 N O N 586 N O N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N N N 595 S C N 596 N C N 597 N O N 598 R C N 599 N O N 600 N C N 601 N O N 602 N H N 603 N H N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N N N 612 S C N 613 N C N 614 N O N 615 N C Y 616 N C Y 617 N C Y 618 N C Y 619 N N Y 620 N C Y 621 N C Y 622 N C Y 623 N C Y 624 N C N 625 N O N 626 N H N 627 N H N 628 N H N 629 N H N 630 N H N 631 N H N 632 N H N 633 N H N 634 N H N 635 N H N 636 N H N 637 N H N 638 N N N 639 S C N 640 N C N 641 N O N 642 N C Y 643 N C Y 644 N C Y 645 N C Y 646 N C Y 647 N C Y 648 N C N 649 N O N 650 N O N 651 N H N 652 N H N 653 N H N 654 N H N 655 N H N 656 N H N 657 N H N 658 N H N 659 N H N 660 N H N 661 N H N 662 N O N 663 N P N 664 N O N 665 N O N 666 N O N 667 N C N 668 R C N 669 N O N 670 S C N 671 N O N 672 R C N 673 N O N 674 R C N 675 N N N 676 N C N 677 N O N 678 N N N 679 N C N 680 N O N 681 N C N 682 N C N 683 N H N 684 N H N 685 N H N 686 N H N 687 N H N 688 N H N 689 N H N 690 N H N 691 N H N 692 N H N 693 N H N 694 N H N 695 N H N 696 N N N 697 S C N 698 N C N 699 N O N 700 N C N 701 N C N 702 N C N 703 N O N 704 N H N 705 N H N 706 N H N 707 N H N 708 N H N 709 N H N 710 N H N 711 N H N 712 N H N 713 N H N 714 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N sing Y 172 N sing Y 173 N sing Y 174 N doub N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub N 181 N sing Y 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing Y 241 N sing Y 242 N sing Y 243 N doub N 244 N sing Y 245 N sing N 246 N sing Y 247 N doub N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing Y 327 N sing Y 328 N sing Y 329 N doub N 330 N sing Y 331 N sing N 332 N sing Y 333 N doub N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing Y 413 N sing Y 414 N doub Y 415 N doub N 416 N sing Y 417 N sing N 418 N sing Y 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N doub N 540 N sing N 541 N sing N 542 N sing N 543 N sing Y 544 N doub Y 545 N sing Y 546 N sing N 547 N sing Y 548 N doub N 549 N sing Y 550 N doub N 551 N sing Y 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N doub N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N doub N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N doub N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N doub N 609 N sing N 610 N sing N 611 N sing N 612 N sing Y 613 N doub Y 614 N sing Y 615 N sing N 616 N sing Y 617 N doub Y 618 N sing Y 619 N sing N 620 N sing Y 621 N sing Y 622 N doub N 623 N sing Y 624 N doub N 625 N sing Y 626 N sing N 627 N sing N 628 N sing N 629 N sing N 630 N sing N 631 N sing N 632 N sing N 633 N sing N 634 N sing N 635 N sing N 636 N doub N 637 N sing N 638 N sing N 639 N sing N 640 N sing Y 641 N doub Y 642 N sing Y 643 N sing N 644 N sing Y 645 N doub N 646 N sing Y 647 N doub N 648 N sing Y 649 N sing N 650 N sing N 651 N sing N 652 N sing N 653 N sing N 654 N sing N 655 N sing N 656 N doub N 657 N sing N 658 N sing N 659 N sing N 660 N sing N 661 N sing N 662 N sing N 663 N sing N 664 N sing N 665 N sing N 666 N sing N 667 N sing N 668 N sing N 669 N sing N 670 N sing N 671 N sing N 672 N sing N 673 N sing N 674 N sing N 675 N sing N 676 N sing N 677 N sing N 678 N sing N 679 N sing N 680 N doub N 681 N sing N 682 N sing N 683 N sing N 684 N doub N 685 N sing N 686 N doub N 687 N sing N 688 N sing N 689 N sing N 690 N sing N 691 N sing N 692 N sing N 693 N sing N 694 N sing N 695 N doub N 696 N sing N 697 N sing N 698 N sing N 699 N sing N 700 N sing N 701 N sing N 702 N sing N 703 N sing N 704 N sing N 705 N sing N 706 N sing US Nat. Struct. Mol. Biol. 1545-9985 25 715 721 10.1038/s41594-018-0099-4 30076410 Cation trafficking propels RNA hydrolysis. 2018 0000-0002-3591-2195 10.2210/pdb6dog/pdb pdb_00006dog 100 1 CCD 2013-07-28 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 1 1.0 22-BM APS 1 SYNCHROTRON APS BEAMLINE 22-BM 16330.462 Ribonuclease H 3.1.26.4 Catalytic Domain 1 man polymer 1224.802 RNA (5'-R(*AP*CP*AP*U)-3') 1 syn polymer 605.430 RNA (5'-R(P*CP*G)-3') 1 syn polymer 1824.228 DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') 1 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 39.098 POTASSIUM ION 3 syn non-polymer 126.904 IODIDE ION 4 syn non-polymer 62.068 1,2-ETHANEDIOL 4 syn non-polymer 92.094 GLYCEROL 5 syn non-polymer 150.173 TRIETHYLENE GLYCOL 1 syn non-polymer 18.015 water 196 nat water RNase H no no GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK A polypeptide(L) no no ACAU ACAU B polyribonucleotide no no CG CG b polyribonucleotide no no (DC)(DG)(DA)(DT)(DG)(DT) CGATGT C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125 sample 1 142 rnhA, BH0863 272558 Bacillus halodurans 562 Escherichia coli BL21(DE3) plasmid Biological sequence pET15b 1 2.46 50.05 0.000 VAPOR DIFFUSION, HANGING DROP 14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2 294 -5.946 1 20 B 1 C 6 -0.553 B_A1:DT6_C 1 -5.315 0.128 -0.161 -0.122 2.944 1 19 B 2 C 5 2.457 B_C2:DG5_C 2 -12.126 0.177 0.045 -0.136 -6.181 1 20 B 3 C 4 1.916 B_A3:DT4_C 3 -10.743 0.090 -0.212 -0.160 -1.355 1 20 B 4 C 3 2.669 B_U4:DA3_C 4 -13.370 0.018 0.021 -0.160 -6.333 1 19 b 5 C 2 0.714 b_C5:DG2_C 5 -8.524 0.124 0.114 -0.246 -5.435 1 19 b 6 C 1 -0.657 b_G6:DC1_C 6 -6.096 -0.248 -0.111 -0.099 3.022 35.925 B B 1 2 5.531 C C 6 5 3.163 3.406 0.722 -1.068 BB_A1C2:DG5DT6_CC 1 -1.378 2.238 35.743 -2.193 -1.358 2.599 29.031 B B 2 3 23.830 C C 5 4 3.490 11.613 -0.437 -1.448 BB_C2A3:DT4DG5_CC 2 2.147 -4.406 26.567 -5.378 1.332 3.122 25.608 B B 3 4 5.712 C C 4 3 3.282 2.526 1.098 -2.125 BB_A3U4:DA3DT4_CC 3 1.608 -3.635 25.435 -5.498 -2.030 2.925 33.383 B b 4 5 10.721 C C 3 2 3.340 6.124 -0.257 -1.964 Bb_U4C5:DG2DA3_CC 4 1.161 -2.033 32.812 -4.400 0.634 3.035 22.908 b b 5 6 11.583 C C 2 1 3.380 4.517 0.962 -2.114 bb_C5G6:DC1DG2_CC 5 6.017 -15.428 21.653 -6.939 -0.269 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2018-08-15 1 1 2023-10-11 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_value_order _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id N RCSB Y RCSB 2018-06-09 REL REL The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal. Cleavage of RNA by B. Halodurans Ribonuclease H1 undefined 1 A O HOH 458 6.16 MG MG SUBJECT OF INVESTIGATION K K SUBJECT OF INVESTIGATION MG MAGNESIUM ION K POTASSIUM ION IOD IODIDE ION EDO 1,2-ETHANEDIOL GOL GLYCEROL PGE TRIETHYLENE GLYCOL HOH water 32630 synthetic construct sample 1 4 32630 synthetic construct sample 1 2 32630 synthetic construct sample 1 6 1ZBL pdbid 1ZBL PDB experimental model MG 201 5 MG MG 201 A MG 202 5 MG MG 202 A K 211 6 K K 203 A IOD 1 7 IOD IOD 204 A IOD 2 7 IOD IOD 205 A IOD 3 7 IOD IOD 206 A IOD 4 7 IOD IOD 207 A EDO 1 8 EDO EDO 208 A EDO 2 8 EDO EDO 209 A EDO 3 8 EDO EDO 210 A EDO 4 8 EDO EDO 211 A GOL 6 9 GOL GOL 212 A GOL 7 9 GOL GOL 213 A GOL 8 9 GOL GOL 214 A GOL 9 9 GOL GOL 215 A PGE 10 10 PGE PGE 216 A K 212 6 K K 217 A K 213 6 K K 101 C GOL 5 9 GOL GOL 102 C HOH 134 11 HOH HOH 301 A HOH 88 11 HOH HOH 302 A HOH 105 11 HOH HOH 303 A HOH 140 11 HOH HOH 304 A HOH 101 11 HOH HOH 305 A HOH 161 11 HOH HOH 306 A HOH 114 11 HOH HOH 307 A HOH 9 11 HOH HOH 308 A HOH 93 11 HOH HOH 309 A HOH 36 11 HOH HOH 310 A HOH 75 11 HOH HOH 311 A HOH 94 11 HOH HOH 312 A HOH 79 11 HOH HOH 313 A HOH 29 11 HOH HOH 314 A HOH 181 11 HOH HOH 315 A HOH 118 11 HOH HOH 316 A HOH 111 11 HOH HOH 317 A HOH 55 11 HOH HOH 318 A HOH 157 11 HOH HOH 319 A HOH 116 11 HOH HOH 320 A HOH 173 11 HOH HOH 321 A HOH 11 11 HOH HOH 322 A HOH 64 11 HOH HOH 323 A HOH 63 11 HOH HOH 324 A HOH 180 11 HOH HOH 325 A HOH 20 11 HOH HOH 326 A HOH 53 11 HOH HOH 327 A HOH 117 11 HOH HOH 328 A HOH 145 11 HOH HOH 329 A HOH 66 11 HOH HOH 330 A HOH 61 11 HOH HOH 331 A HOH 163 11 HOH HOH 332 A HOH 51 11 HOH HOH 333 A HOH 155 11 HOH HOH 334 A HOH 133 11 HOH HOH 335 A HOH 62 11 HOH HOH 336 A HOH 185 11 HOH HOH 337 A HOH 13 11 HOH HOH 338 A HOH 17 11 HOH HOH 339 A HOH 131 11 HOH HOH 340 A HOH 35 11 HOH HOH 341 A HOH 102 11 HOH HOH 342 A HOH 19 11 HOH HOH 343 A HOH 59 11 HOH HOH 344 A HOH 40 11 HOH HOH 345 A HOH 122 11 HOH HOH 346 A HOH 107 11 HOH HOH 347 A HOH 15 11 HOH HOH 348 A HOH 42 11 HOH HOH 349 A HOH 60 11 HOH HOH 350 A HOH 52 11 HOH HOH 351 A HOH 192 11 HOH HOH 352 A HOH 127 11 HOH HOH 353 A HOH 150 11 HOH HOH 354 A HOH 1 11 HOH HOH 355 A HOH 28 11 HOH HOH 356 A HOH 149 11 HOH HOH 357 A HOH 10 11 HOH HOH 358 A HOH 41 11 HOH HOH 359 A HOH 165 11 HOH HOH 360 A HOH 38 11 HOH HOH 361 A HOH 43 11 HOH HOH 362 A HOH 56 11 HOH HOH 363 A HOH 34 11 HOH HOH 364 A HOH 120 11 HOH HOH 365 A HOH 32 11 HOH HOH 366 A HOH 99 11 HOH HOH 367 A HOH 21 11 HOH HOH 368 A HOH 177 11 HOH HOH 369 A HOH 84 11 HOH HOH 370 A HOH 82 11 HOH HOH 371 A HOH 189 11 HOH HOH 372 A HOH 46 11 HOH HOH 373 A HOH 27 11 HOH HOH 374 A HOH 14 11 HOH HOH 375 A HOH 72 11 HOH HOH 376 A HOH 141 11 HOH HOH 377 A HOH 54 11 HOH HOH 378 A HOH 44 11 HOH HOH 379 A HOH 95 11 HOH HOH 380 A HOH 96 11 HOH HOH 381 A HOH 142 11 HOH HOH 382 A HOH 179 11 HOH HOH 383 A HOH 23 11 HOH HOH 384 A HOH 8 11 HOH HOH 385 A HOH 45 11 HOH HOH 386 A HOH 7 11 HOH HOH 387 A HOH 146 11 HOH HOH 388 A HOH 25 11 HOH HOH 389 A HOH 81 11 HOH HOH 390 A HOH 3 11 HOH HOH 391 A HOH 113 11 HOH HOH 392 A HOH 92 11 HOH HOH 393 A HOH 22 11 HOH HOH 394 A HOH 178 11 HOH HOH 395 A HOH 48 11 HOH HOH 396 A HOH 166 11 HOH HOH 397 A HOH 153 11 HOH HOH 398 A HOH 195 11 HOH HOH 399 A HOH 50 11 HOH HOH 400 A HOH 139 11 HOH HOH 401 A HOH 37 11 HOH HOH 402 A HOH 182 11 HOH HOH 403 A HOH 108 11 HOH HOH 404 A HOH 67 11 HOH HOH 405 A HOH 193 11 HOH HOH 406 A HOH 138 11 HOH HOH 407 A HOH 2 11 HOH HOH 408 A HOH 57 11 HOH HOH 409 A HOH 91 11 HOH HOH 410 A HOH 158 11 HOH HOH 411 A HOH 78 11 HOH HOH 412 A HOH 110 11 HOH HOH 413 A HOH 24 11 HOH HOH 414 A HOH 80 11 HOH HOH 415 A HOH 5 11 HOH HOH 416 A HOH 6 11 HOH HOH 417 A HOH 151 11 HOH HOH 418 A HOH 154 11 HOH HOH 419 A HOH 103 11 HOH HOH 420 A HOH 147 11 HOH HOH 421 A HOH 49 11 HOH HOH 422 A HOH 152 11 HOH HOH 423 A HOH 156 11 HOH HOH 424 A HOH 71 11 HOH HOH 425 A HOH 176 11 HOH HOH 426 A HOH 144 11 HOH HOH 427 A HOH 123 11 HOH HOH 428 A HOH 137 11 HOH HOH 429 A HOH 89 11 HOH HOH 430 A HOH 167 11 HOH HOH 431 A HOH 76 11 HOH HOH 432 A HOH 143 11 HOH HOH 433 A HOH 132 11 HOH HOH 434 A HOH 58 11 HOH HOH 435 A HOH 90 11 HOH HOH 436 A HOH 184 11 HOH HOH 437 A HOH 135 11 HOH HOH 438 A HOH 183 11 HOH HOH 439 A HOH 164 11 HOH HOH 440 A HOH 148 11 HOH HOH 441 A HOH 121 11 HOH HOH 442 A HOH 74 11 HOH HOH 443 A HOH 83 11 HOH HOH 444 A HOH 77 11 HOH HOH 445 A HOH 125 11 HOH HOH 446 A HOH 39 11 HOH HOH 447 A HOH 47 11 HOH HOH 448 A HOH 97 11 HOH HOH 449 A HOH 128 11 HOH HOH 450 A HOH 196 11 HOH HOH 451 A HOH 33 11 HOH HOH 452 A HOH 30 11 HOH HOH 453 A HOH 87 11 HOH HOH 454 A HOH 26 11 HOH HOH 455 A HOH 106 11 HOH HOH 456 A HOH 65 11 HOH HOH 457 A HOH 86 11 HOH HOH 458 A HOH 85 11 HOH HOH 201 B HOH 112 11 HOH HOH 202 B HOH 194 11 HOH HOH 203 B HOH 175 11 HOH HOH 204 B HOH 115 11 HOH HOH 205 B HOH 16 11 HOH HOH 206 B HOH 69 11 HOH HOH 207 B HOH 98 11 HOH HOH 208 B HOH 190 11 HOH HOH 209 B HOH 188 11 HOH HOH 210 B HOH 169 11 HOH HOH 211 B HOH 162 11 HOH HOH 212 B HOH 104 11 HOH HOH 101 b HOH 119 11 HOH HOH 102 b HOH 100 11 HOH HOH 103 b HOH 126 11 HOH HOH 104 b HOH 174 11 HOH HOH 201 C HOH 130 11 HOH HOH 202 C HOH 12 11 HOH HOH 203 C HOH 171 11 HOH HOH 204 C HOH 129 11 HOH HOH 205 C HOH 191 11 HOH HOH 206 C HOH 170 11 HOH HOH 207 C HOH 136 11 HOH HOH 208 C HOH 70 11 HOH HOH 209 C HOH 4 11 HOH HOH 210 C HOH 172 11 HOH HOH 211 C HOH 18 11 HOH HOH 212 C HOH 109 11 HOH HOH 213 C HOH 31 11 HOH HOH 214 C HOH 68 11 HOH HOH 215 C HOH 168 11 HOH HOH 216 C HOH 160 11 HOH HOH 217 C HOH 187 11 HOH HOH 218 C HOH 73 11 HOH HOH 219 C HOH 186 11 HOH HOH 220 C HOH 124 11 HOH HOH 221 C HOH 159 11 HOH HOH 222 C n 1 55 A n 2 56 A n 3 57 A n 4 58 A n 5 59 A n 6 60 A GLU 61 n 7 GLU 61 A GLU 62 n 8 GLU 62 A ILE 63 n 9 ILE 63 A ILE 64 n 10 ILE 64 A TRP 65 n 11 TRP 65 A GLU 66 n 12 GLU 66 A SER 67 n 13 SER 67 A LEU 68 n 14 LEU 68 A SER 69 n 15 SER 69 A VAL 70 n 16 VAL 70 A ASP 71 n 17 ASP 71 A VAL 72 n 18 VAL 72 A GLY 73 n 19 GLY 73 A SER 74 n 20 SER 74 A GLN 75 n 21 GLN 75 A GLY 76 n 22 GLY 76 A ASN 77 n 23 ASN 77 A PRO 78 n 24 PRO 78 A GLY 79 n 25 GLY 79 A ILE 80 n 26 ILE 80 A VAL 81 n 27 VAL 81 A GLU 82 n 28 GLU 82 A TYR 83 n 29 TYR 83 A LYS 84 n 30 LYS 84 A GLY 85 n 31 GLY 85 A VAL 86 n 32 VAL 86 A ASP 87 n 33 ASP 87 A THR 88 n 34 THR 88 A LYS 89 n 35 LYS 89 A THR 90 n 36 THR 90 A GLY 91 n 37 GLY 91 A GLU 92 n 38 GLU 92 A VAL 93 n 39 VAL 93 A LEU 94 n 40 LEU 94 A PHE 95 n 41 PHE 95 A GLU 96 n 42 GLU 96 A ARG 97 n 43 ARG 97 A GLU 98 n 44 GLU 98 A PRO 99 n 45 PRO 99 A ILE 100 n 46 ILE 100 A PRO 101 n 47 PRO 101 A ILE 102 n 48 ILE 102 A GLY 103 n 49 GLY 103 A THR 104 n 50 THR 104 A ASN 105 n 51 ASN 105 A ASN 106 n 52 ASN 106 A MET 107 n 53 MET 107 A GLY 108 n 54 GLY 108 A GLU 109 n 55 GLU 109 A PHE 110 n 56 PHE 110 A LEU 111 n 57 LEU 111 A ALA 112 n 58 ALA 112 A ILE 113 n 59 ILE 113 A VAL 114 n 60 VAL 114 A HIS 115 n 61 HIS 115 A GLY 116 n 62 GLY 116 A LEU 117 n 63 LEU 117 A ARG 118 n 64 ARG 118 A TYR 119 n 65 TYR 119 A LEU 120 n 66 LEU 120 A LYS 121 n 67 LYS 121 A GLU 122 n 68 GLU 122 A ARG 123 n 69 ARG 123 A ASN 124 n 70 ASN 124 A SER 125 n 71 SER 125 A ARG 126 n 72 ARG 126 A LYS 127 n 73 LYS 127 A PRO 128 n 74 PRO 128 A ILE 129 n 75 ILE 129 A TYR 130 n 76 TYR 130 A SER 131 n 77 SER 131 A ASP 132 n 78 ASP 132 A SER 133 n 79 SER 133 A GLN 134 n 80 GLN 134 A THR 135 n 81 THR 135 A ALA 136 n 82 ALA 136 A ILE 137 n 83 ILE 137 A LYS 138 n 84 LYS 138 A TRP 139 n 85 TRP 139 A VAL 140 n 86 VAL 140 A LYS 141 n 87 LYS 141 A ASP 142 n 88 ASP 142 A LYS 143 n 89 LYS 143 A LYS 144 n 90 LYS 144 A ALA 145 n 91 ALA 145 A LYS 146 n 92 LYS 146 A SER 147 n 93 SER 147 A THR 148 n 94 THR 148 A LEU 149 n 95 LEU 149 A VAL 150 n 96 VAL 150 A ARG 151 n 97 ARG 151 A ASN 152 n 98 ASN 152 A GLU 153 n 99 GLU 153 A GLU 154 n 100 GLU 154 A THR 155 n 101 THR 155 A ALA 156 n 102 ALA 156 A LEU 157 n 103 LEU 157 A ILE 158 n 104 ILE 158 A TRP 159 n 105 TRP 159 A LYS 160 n 106 LYS 160 A LEU 161 n 107 LEU 161 A VAL 162 n 108 VAL 162 A ASP 163 n 109 ASP 163 A GLU 164 n 110 GLU 164 A ALA 165 n 111 ALA 165 A GLU 166 n 112 GLU 166 A GLU 167 n 113 GLU 167 A TRP 168 n 114 TRP 168 A LEU 169 n 115 LEU 169 A ASN 170 n 116 ASN 170 A THR 171 n 117 THR 171 A HIS 172 n 118 HIS 172 A THR 173 n 119 THR 173 A TYR 174 n 120 TYR 174 A GLU 175 n 121 GLU 175 A THR 176 n 122 THR 176 A PRO 177 n 123 PRO 177 A ILE 178 n 124 ILE 178 A LEU 179 n 125 LEU 179 A LYS 180 n 126 LYS 180 A TRP 181 n 127 TRP 181 A GLN 182 n 128 GLN 182 A THR 183 n 129 THR 183 A ASP 184 n 130 ASP 184 A LYS 185 n 131 LYS 185 A TRP 186 n 132 TRP 186 A GLY 187 n 133 GLY 187 A GLU 188 n 134 GLU 188 A ILE 189 n 135 ILE 189 A LYS 190 n 136 LYS 190 A ALA 191 n 137 ALA 191 A ASP 192 n 138 ASP 192 A TYR 193 n 139 TYR 193 A GLY 194 n 140 GLY 194 A ARG 195 n 141 ARG 195 A LYS 196 n 142 LYS 196 A A 1 n 1 A 1 B C 2 n 2 C 2 B A 3 n 3 A 3 B U 4 n 4 U 4 B C 5 n 1 C 5 b G 6 n 2 G 6 b DC 1 n 1 DC 1 C DG 2 n 2 DG 2 C DA 3 n 3 DA 3 C DT 4 n 4 DT 4 C DG 5 n 5 DG 5 C DT 6 n 6 DT 6 C 5.8451 -1.6086 1.5370 1.6410 -0.3729 3.5243 0.2319 0.1702 -0.2038 -0.1618 -0.1513 -0.0769 0.3482 0.1712 -0.0735 0.1503 0.0210 0.0196 0.0860 0.0122 0.1227 refined 25.549 -5.591 17.451 X-RAY DIFFRACTION 3.8351 -1.0303 -3.0648 4.0694 1.3857 5.7064 -0.0362 -0.3282 -1.0557 0.1169 -0.0040 -0.4732 0.7826 0.3773 0.0488 0.2175 0.0638 0.0110 0.1581 0.0585 0.2840 refined 28.186 -11.579 24.053 X-RAY DIFFRACTION 3.2929 -0.0118 1.4592 0.9637 0.2560 3.0323 0.0771 -0.2100 -0.0808 -0.0362 -0.0956 0.0275 0.0575 -0.2358 0.0111 0.0870 0.0129 0.0203 0.0780 0.0055 0.0875 refined 21.716 -1.218 23.441 X-RAY DIFFRACTION 3.8599 -3.1762 0.0558 6.0415 -0.4703 6.7919 0.2196 0.1721 0.4261 -0.2675 -0.2013 -0.2849 -0.8356 0.0974 -0.0287 0.2414 0.0092 0.0371 0.0938 0.0303 0.1629 refined 23.877 9.389 16.644 X-RAY DIFFRACTION 4.6311 0.4226 2.0731 2.5284 0.1801 2.3722 0.2206 -0.0392 0.3719 -0.0930 -0.3367 0.3907 -0.4576 -0.8718 0.2299 0.2927 0.3270 -0.0280 0.4132 -0.1277 0.2136 refined 8.521 7.452 16.160 X-RAY DIFFRACTION 7.3427 0.8670 5.8639 1.8557 1.6539 5.7527 0.1756 -0.2428 0.0715 0.0198 -0.2866 0.1766 -0.1151 -0.6524 0.0971 0.1345 0.0689 0.0271 0.2208 -0.0367 0.1304 refined 12.445 5.745 24.903 X-RAY DIFFRACTION 3.0567 -0.3438 -0.9859 2.7897 1.1919 5.0413 0.0889 0.2478 -0.1197 -0.3956 -0.0437 -0.1870 0.0412 0.2337 -0.0952 0.1259 0.0530 0.0056 0.1160 0.0362 0.0839 refined 28.952 -0.835 17.830 X-RAY DIFFRACTION 2.8145 0.2234 1.4625 6.5024 -1.2101 1.1453 -0.1414 0.1383 -0.1621 -0.6881 -0.1851 -0.2272 0.1528 0.1231 0.3440 0.3143 0.0752 0.0391 0.2274 0.0143 0.1306 refined 23.776 0.746 5.147 X-RAY DIFFRACTION 3.0505 -1.1167 -2.8641 2.8056 0.6852 3.9317 -0.1401 0.4189 -0.2119 -0.9042 -0.2831 0.2753 -0.3482 -0.3209 0.3670 0.3998 0.0840 -0.0359 0.2010 -0.0084 0.1498 refined 16.453 3.435 3.284 X-RAY DIFFRACTION A 61 A 87 X-RAY DIFFRACTION 1 ( CHAIN A AND RESID 61:87 ) A 88 A 96 X-RAY DIFFRACTION 2 ( CHAIN A AND RESID 88:96 ) A 97 A 133 X-RAY DIFFRACTION 3 ( CHAIN A AND RESID 97:133 ) A 134 A 142 X-RAY DIFFRACTION 4 ( CHAIN A AND RESID 134:142 ) A 143 A 155 X-RAY DIFFRACTION 5 ( CHAIN A AND RESID 143:155 ) A 156 A 169 X-RAY DIFFRACTION 6 ( CHAIN A AND RESID 156:169 ) A 170 A 196 X-RAY DIFFRACTION 7 ( CHAIN A AND RESID 170:196 ) B 1 B 4 X-RAY DIFFRACTION 8 ( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 ) b 5 b 6 X-RAY DIFFRACTION 8 ( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 ) C 1 C 6 X-RAY DIFFRACTION 9 ( CHAIN C AND RESID 1:6 ) author_and_software_defined_assembly PISA 4 tetrameric none 6980 -28 7470 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 A ASP 192 A OD1 ASP 138 1_555 106.6 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 A HOH 302 C X O HOH 1_555 174.1 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 A HOH 302 C X O HOH 1_555 76.6 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 A HOH 310 X O HOH 1_555 90.1 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 A HOH 310 X O HOH 1_555 90.5 A HOH 302 C X O HOH 1_555 A MG 201 E MG MG 1_555 A HOH 310 X O HOH 1_555 84.9 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 A HOH 323 X O HOH 1_555 88.1 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 A HOH 323 X O HOH 1_555 87.7 A HOH 302 C X O HOH 1_555 A MG 201 E MG MG 1_555 A HOH 323 X O HOH 1_555 97.0 A HOH 310 X O HOH 1_555 A MG 201 E MG MG 1_555 A HOH 323 X O HOH 1_555 177.0 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP3 C 1 1_555 159.5 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP3 C 1 1_555 93.9 A HOH 302 C X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP3 C 1 1_555 18.2 A HOH 310 X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP3 C 1 1_555 90.4 A HOH 323 X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP3 C 1 1_555 92.1 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 95.9 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 156.7 A HOH 302 C X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 81.5 A HOH 310 X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 95.8 A HOH 323 X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 86.8 b C 5 B C OP3 C 1 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 63.7 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 98.4 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 152.9 A HOH 302 C X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 79.4 A HOH 310 X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 99.9 A HOH 323 X O HOH 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 82.7 b C 5 B C OP3 C 1 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 61.3 b C 5 B C OP1 C 1 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 4.9 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 A GLU 109 A OE1 GLU 55 1_555 96.9 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 A ASP 132 A OD1 ASP 78 1_555 128.9 A GLU 109 A OE1 GLU 55 1_555 A MG 202 F MG MG 1_555 A ASP 132 A OD1 ASP 78 1_555 96.5 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 A ASP 132 A OD2 ASP 78 1_555 102.3 A GLU 109 A OE1 GLU 55 1_555 A MG 202 F MG MG 1_555 A ASP 132 A OD2 ASP 78 1_555 149.0 A ASP 132 A OD1 ASP 78 1_555 A MG 202 F MG MG 1_555 A ASP 132 A OD2 ASP 78 1_555 52.5 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 B U 4 C B O3' U 4 1_555 153.1 A GLU 109 A OE1 GLU 55 1_555 A MG 202 F MG MG 1_555 B U 4 C B O3' U 4 1_555 90.3 A ASP 132 A OD1 ASP 78 1_555 A MG 202 F MG MG 1_555 B U 4 C B O3' U 4 1_555 75.4 A ASP 132 A OD2 ASP 78 1_555 A MG 202 F MG MG 1_555 B U 4 C B O3' U 4 1_555 83.5 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 b C 5 B C OP1 C 1 1_555 90.9 A GLU 109 A OE1 GLU 55 1_555 A MG 202 F MG MG 1_555 b C 5 B C OP1 C 1 1_555 109.7 A ASP 132 A OD1 ASP 78 1_555 A MG 202 F MG MG 1_555 b C 5 B C OP1 C 1 1_555 129.4 A ASP 132 A OD2 ASP 78 1_555 A MG 202 F MG MG 1_555 b C 5 B C OP1 C 1 1_555 94.3 B U 4 C B O3' U 4 1_555 A MG 202 F MG MG 1_555 b C 5 B C OP1 C 1 1_555 62.3 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 b C 5 C C OP1 C 1 1_555 91.6 A GLU 109 A OE1 GLU 55 1_555 A MG 202 F MG MG 1_555 b C 5 C C OP1 C 1 1_555 115.6 A ASP 132 A OD1 ASP 78 1_555 A MG 202 F MG MG 1_555 b C 5 C C OP1 C 1 1_555 125.3 A ASP 132 A OD2 ASP 78 1_555 A MG 202 F MG MG 1_555 b C 5 C C OP1 C 1 1_555 88.2 B U 4 C B O3' U 4 1_555 A MG 202 F MG MG 1_555 b C 5 C C OP1 C 1 1_555 62.1 b C 5 B C OP1 C 1 1_555 A MG 202 F MG MG 1_555 b C 5 C C OP1 C 1 1_555 6.1 A ASP 132 A OD2 ASP 78 1_555 A K 217 B U K K 1_555 A HOH 323 X O HOH 1_555 46.2 A ASP 132 A OD2 ASP 78 1_555 A K 217 B U K K 1_555 A HOH 368 X O HOH 1_555 53.7 A HOH 323 X O HOH 1_555 A K 217 B U K K 1_555 A HOH 368 X O HOH 1_555 60.0 A ASP 132 A OD2 ASP 78 1_555 A K 217 B U K K 1_555 B HOH 208 Y O HOH 1_555 154.2 A HOH 323 X O HOH 1_555 A K 217 B U K K 1_555 B HOH 208 Y O HOH 1_555 156.0 A HOH 368 X O HOH 1_555 A K 217 B U K K 1_555 B HOH 208 Y O HOH 1_555 116.8 A ASP 132 A OD2 ASP 78 1_555 A K 217 B U K K 1_555 b C 5 B C OP2 C 1 1_555 85.5 A HOH 323 X O HOH 1_555 A K 217 B U K K 1_555 b C 5 B C OP2 C 1 1_555 71.8 A HOH 368 X O HOH 1_555 A K 217 B U K K 1_555 b C 5 B C OP2 C 1 1_555 130.5 B HOH 208 Y O HOH 1_555 A K 217 B U K K 1_555 b C 5 B C OP2 C 1 1_555 111.7 A ASP 132 A OD2 ASP 78 1_555 A K 217 B U K K 1_555 b HOH 101 Z O HOH 1_555 136.4 A HOH 323 X O HOH 1_555 A K 217 B U K K 1_555 b HOH 101 Z O HOH 1_555 120.2 A HOH 368 X O HOH 1_555 A K 217 B U K K 1_555 b HOH 101 Z O HOH 1_555 167.9 B HOH 208 Y O HOH 1_555 A K 217 B U K K 1_555 b HOH 101 Z O HOH 1_555 57.5 b C 5 B C OP2 C 1 1_555 A K 217 B U K K 1_555 b HOH 101 Z O HOH 1_555 54.3 A ASP 192 A OD1 ASP 138 1_555 A K 203 C G K K 1_555 A ASP 192 A OD2 ASP 138 1_555 40.9 A ASP 192 A OD1 ASP 138 1_555 A K 203 C G K K 1_555 A HOH 302 C X O HOH 1_555 50.4 A ASP 192 A OD2 ASP 138 1_555 A K 203 C G K K 1_555 A HOH 302 C X O HOH 1_555 83.9 A ASP 192 A OD1 ASP 138 1_555 A K 203 C G K K 1_555 A HOH 310 X O HOH 1_555 56.6 A ASP 192 A OD2 ASP 138 1_555 A K 203 C G K K 1_555 A HOH 310 X O HOH 1_555 95.1 A HOH 302 C X O HOH 1_555 A K 203 C G K K 1_555 A HOH 310 X O HOH 1_555 51.4 A ASP 192 A OD1 ASP 138 1_555 A K 203 C G K K 1_555 A HOH 328 X O HOH 1_555 78.5 A ASP 192 A OD2 ASP 138 1_555 A K 203 C G K K 1_555 A HOH 328 X O HOH 1_555 52.4 A HOH 302 C X O HOH 1_555 A K 203 C G K K 1_555 A HOH 328 X O HOH 1_555 85.6 A HOH 310 X O HOH 1_555 A K 203 C G K K 1_555 A HOH 328 X O HOH 1_555 130.7 A ASP 192 A OD1 ASP 138 1_555 A K 203 C G K K 1_555 b G 6 C OP2 G 2 1_555 100.3 A ASP 192 A OD2 ASP 138 1_555 A K 203 C G K K 1_555 b G 6 C OP2 G 2 1_555 141.0 A HOH 302 C X O HOH 1_555 A K 203 C G K K 1_555 b G 6 C OP2 G 2 1_555 60.8 A HOH 310 X O HOH 1_555 A K 203 C G K K 1_555 b G 6 C OP2 G 2 1_555 50.8 A HOH 328 X O HOH 1_555 A K 203 C G K K 1_555 b G 6 C OP2 G 2 1_555 132.2 A HOH 428 X O HOH 4_555 C K 101 A V K K 1_555 C DT 4 D O4 DT 4 1_555 96.7 A HOH 428 X O HOH 4_555 C K 101 A V K K 1_555 C DG 5 D O6 DG 5 1_555 165.6 C DT 4 D O4 DT 4 1_555 C K 101 A V K K 1_555 C DG 5 D O6 DG 5 1_555 75.7 A HOH 428 X O HOH 4_555 C K 101 A V K K 1_555 C HOH 210 AA O HOH 1_555 81.5 C DT 4 D O4 DT 4 1_555 C K 101 A V K K 1_555 C HOH 210 AA O HOH 1_555 85.5 C DG 5 D O6 DG 5 1_555 C K 101 A V K K 1_555 C HOH 210 AA O HOH 1_555 85.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 100 A O ILE 46 A N VAL 81 A N VAL 27 A O VAL 86 A O VAL 32 A N SER 69 A N SER 15 A N LEU 68 A N LEU 14 A O TYR 130 A O TYR 76 A N ILE 129 A N ILE 75 A O LEU 179 A O LEU 125 1 B O2' A 1 B O2' A 1 1 Y 1 b O2' G 6 C O2' G 2 1 Y 1 A GLY 55 A GLY 1 1 Y 1 A SER 56 A SER 2 1 Y 1 A HIS 57 A HIS 3 1 Y 1 A MET 58 A MET 4 1 Y 1 A ALA 59 A ALA 5 1 Y 1 A LYS 60 A LYS 6 1 Y 1 A A O2 O1 EDO GOL 211 215 1.26 1 A A OE2 O GLU HOH 175 301 2.07 1 C C O2 O DC HOH 1 201 2.17 1 1.92 0.30 108.30 110.22 C C C O4' C1' N9 DG DG DG 5 5 5 N 1 b b P OP3 C C 5 5 -0.135 0.012 1.607 1.472 B B N 1 A A O O HOH HOH 301 301 1.74 1_555 2_656 1 A A O O HOH HOH 395 395 1.84 1_555 2_656 79.360 25.4263 9.520 Structures refined in Phenix and nucleic acid and protein residues built in Coot 0.1831 0.1610 0.1621 1.2850 20.27 2290 47261 4.8500 97.6500 0.1200 1 THROUGHOUT 1.370 18.2600 0.9000 1.1100 pdbid 1ZBL 1.2850 20.27 196 1615 49.09 38.67 65 244 1110 148 0.008 1514 1.104 2062 0.078 225 0.007 213 24.069 593 0.2802 0.0000 0.2942 1.3127 107 2153 2260 16 76.0000 0.2729 0.0000 0.2630 1.3433 120 2838 2958 16 99.0000 0.2920 0.0000 0.2395 1.3768 133 2863 2996 16 100.0000 0.2809 0.0000 0.2321 1.4141 162 2852 3014 16 100.0000 0.2220 0.0000 0.2144 1.4557 156 2883 3039 16 100.0000 0.2155 0.0000 0.1901 1.5026 149 2808 2957 16 100.0000 0.1989 0.0000 0.1747 1.5563 156 2872 3028 16 100.0000 0.1621 0.0000 0.1608 1.6186 160 2839 2999 16 100.0000 0.1630 0.0000 0.1559 1.6922 136 2866 3002 16 100.0000 0.1746 0.0000 0.1512 1.7814 152 2870 3022 16 99.0000 0.1667 0.0000 0.1571 1.8929 139 2850 2989 16 100.0000 0.1677 0.0000 0.1569 2.0390 144 2877 3021 16 100.0000 0.1833 0.0000 0.1500 2.2439 119 2903 3022 16 100.0000 0.1847 0.0000 0.1551 2.5681 165 2856 3021 16 99.0000 0.1688 0.0000 0.1543 3.2334 147 2890 3037 16 99.0000 0.1751 0.0000 0.1446 20.2762 145 2751 2896 16 92.0000 15.260 1.280 20.270 6DOG 47264 1 7.600 47264 1.000 97.700 1.280 1.310 1645 1 1.000 69.800 7.040 20.270 218 1 1.000 66.200 data scaling Aimless 0.5.31 refinement PHENIX 1.10.1_2155 data extraction PDB_EXTRACT 3.24 data reduction HKL-2000 phasing PHENIX N Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 600 s at 21 C 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 7 N N 7 N N 7 N N 7 N N 8 N N 8 N N 8 N N 8 N N 9 N N 9 N N 9 N N 9 N N 10 N N 6 N N 6 N N 9 N N 11 N N 11 N N 11 N N 11 N N A THR 104 A THR 50 HELX_P A ARG 123 A ARG 69 1 AA1 20 A SER 133 A SER 79 HELX_P A LYS 143 A LYS 89 1 AA2 11 A ASN 152 A ASN 98 HELX_P A GLU 154 A GLU 100 5 AA3 3 A THR 155 A THR 101 HELX_P A ASN 170 A ASN 116 1 AA4 16 A GLN 182 A GLN 128 HELX_P A GLY 187 A GLY 133 1 AA5 6 covale 1.585 both C C sing B U 4 B O3' U 4 1_555 b C 5 C P C 1 1_555 metalc 1.964 A ASP 71 A OD2 ASP 17 1_555 A MG 201 E MG MG 1_555 metalc 1.989 A ASP 71 A OD1 ASP 17 1_555 A MG 202 F MG MG 1_555 metalc 2.033 A GLU 109 A OE1 GLU 55 1_555 A MG 202 F MG MG 1_555 metalc 2.152 A ASP 132 A OD1 ASP 78 1_555 A MG 202 F MG MG 1_555 metalc 2.653 A ASP 132 A OD2 ASP 78 1_555 A MG 202 F MG MG 1_555 metalc 3.305 B A ASP 132 A OD2 ASP 78 1_555 A K 217 U K K 1_555 metalc 2.036 A ASP 192 A OD1 ASP 138 1_555 A MG 201 E MG MG 1_555 metalc 2.807 C A ASP 192 A OD1 ASP 138 1_555 A K 203 G K K 1_555 metalc 3.301 C A ASP 192 A OD2 ASP 138 1_555 A K 203 G K K 1_555 metalc 2.023 C A MG 201 E MG MG 1_555 A HOH 302 X O HOH 1_555 metalc 2.066 A MG 201 E MG MG 1_555 A HOH 310 X O HOH 1_555 metalc 2.088 A MG 201 E MG MG 1_555 A HOH 323 X O HOH 1_555 metalc 2.017 B A MG 201 E MG MG 1_555 b C 5 C OP3 C 1 1_555 metalc 2.397 B A MG 201 E MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.259 C A MG 201 E MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.620 C A MG 202 F MG MG 1_555 B U 4 B O3' U 4 1_555 metalc 2.052 B A MG 202 F MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.144 C A MG 202 F MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 3.078 C C A K 203 G K K 1_555 A HOH 302 X O HOH 1_555 metalc 3.275 C A K 203 G K K 1_555 A HOH 310 X O HOH 1_555 metalc 2.609 C A K 203 G K K 1_555 A HOH 328 X O HOH 1_555 metalc 2.858 C A K 203 G K K 1_555 b G 6 C OP2 G 2 1_555 metalc 3.485 B A K 217 U K K 1_555 A HOH 323 X O HOH 1_555 metalc 3.373 B A K 217 U K K 1_555 A HOH 368 X O HOH 1_555 metalc 2.596 B A K 217 U K K 1_555 B HOH 208 Y O HOH 1_555 metalc 2.550 B B A K 217 U K K 1_555 b C 5 C OP2 C 1 1_555 metalc 3.487 B A K 217 U K K 1_555 b HOH 101 Z O HOH 1_555 metalc 3.340 A A HOH 428 X O HOH 4_555 C K 101 V K K 1_555 metalc 3.198 A C DT 4 D O4 DT 4 1_555 C K 101 V K K 1_555 metalc 2.586 A C DG 5 D O6 DG 5 1_555 C K 101 V K K 1_555 metalc 3.154 A C K 101 V K K 1_555 C HOH 210 AA O HOH 1_555 hydrog WATSON-CRICK B A 1 B N1 A 1 1_555 C DT 6 D N3 DT 6 1_555 hydrog WATSON-CRICK B A 1 B N6 A 1 1_555 C DT 6 D O4 DT 6 1_555 hydrog WATSON-CRICK B C 2 B N3 C 2 1_555 C DG 5 D N1 DG 5 1_555 hydrog WATSON-CRICK B C 2 B N4 C 2 1_555 C DG 5 D O6 DG 5 1_555 hydrog WATSON-CRICK B C 2 B O2 C 2 1_555 C DG 5 D N2 DG 5 1_555 hydrog WATSON-CRICK B A 3 B N1 A 3 1_555 C DT 4 D N3 DT 4 1_555 hydrog WATSON-CRICK B A 3 B N6 A 3 1_555 C DT 4 D O4 DT 4 1_555 hydrog WATSON-CRICK B U 4 B N3 U 4 1_555 C DA 3 D N1 DA 3 1_555 hydrog WATSON-CRICK B U 4 B O4 U 4 1_555 C DA 3 D N6 DA 3 1_555 hydrog WATSON-CRICK b C 5 C N3 C 1 1_555 C DG 2 D N1 DG 2 1_555 hydrog WATSON-CRICK b C 5 C N4 C 1 1_555 C DG 2 D O6 DG 2 1_555 hydrog WATSON-CRICK b C 5 C O2 C 1 1_555 C DG 2 D N2 DG 2 1_555 hydrog WATSON-CRICK b G 6 C N1 G 2 1_555 C DC 1 D N3 DC 1 1_555 hydrog WATSON-CRICK b G 6 C N2 G 2 1_555 C DC 1 D O2 DC 1 1_555 hydrog WATSON-CRICK b G 6 C O6 G 2 1_555 C DC 1 D N4 DC 1 1_555 hydrolase/rna/dna protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE, hydrolase-rna-dna complex A ASN 77 A ASN 23 1 A PRO 78 A PRO 24 -1.20 RNH1_BACHD UNP 1 59 Q9KEI9 AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK 6DOG PDB 2 1 6DOG 6DOG PDB 3 1 6DOG 6DOG PDB 4 1 6DOG 59 196 6DOG 59 196 Q9KEI9 A 1 5 142 1 4 6DOG 1 4 6DOG B 2 1 4 5 6 6DOG 5 6 6DOG b 3 1 2 1 6 6DOG 1 6 6DOG C 4 1 6 1 expression tag GLY 55 6DOG A Q9KEI9 UNP 1 1 expression tag SER 56 6DOG A Q9KEI9 UNP 2 1 expression tag HIS 57 6DOG A Q9KEI9 UNP 3 1 expression tag MET 58 6DOG A Q9KEI9 UNP 4 5 anti-parallel anti-parallel parallel parallel A VAL 93 A VAL 39 A GLY 103 A GLY 49 A GLY 79 A GLY 25 A ASP 87 A ASP 33 A LEU 68 A LEU 14 A GLN 75 A GLN 21 A ILE 129 A ILE 75 A SER 131 A SER 77 A ILE 178 A ILE 124 A LYS 180 A LYS 126 binding site for residue MG A 201 A MG 201 Software 6 binding site for residue MG A 202 A MG 202 Software 5 binding site for residue K A 203 A K 203 Software 8 binding site for residue IOD A 204 A IOD 204 Software 1 binding site for residue IOD A 205 A IOD 205 Software 1 binding site for residue IOD A 206 A IOD 206 Software 3 binding site for residue EDO A 208 A EDO 208 Software 4 binding site for residue EDO A 209 A EDO 209 Software 5 binding site for residue EDO A 210 A EDO 210 Software 4 binding site for residue EDO A 211 A EDO 211 Software 7 binding site for residue GOL A 212 A GOL 212 Software 5 binding site for residue GOL A 213 A GOL 213 Software 9 binding site for residue GOL A 214 A GOL 214 Software 6 binding site for residue GOL A 215 A GOL 215 Software 6 binding site for residue PGE A 216 A PGE 216 Software 10 binding site for residue K A 217 A K 217 Software 6 binding site for residue K C 101 C K 101 Software 3 binding site for residue GOL C 102 C GOL 102 Software 8 A ASP 71 A ASP 17 6 1_555 A ASP 192 A ASP 138 6 1_555 A HOH 302 X HOH 6 1_555 A HOH 310 X HOH 6 1_555 A HOH 323 X HOH 6 1_555 b C 5 C C 1 6 1_555 A ASP 71 A ASP 17 5 1_555 A GLU 109 A GLU 55 5 1_555 A ASP 132 A ASP 78 5 1_555 B U 4 B U 4 5 1_555 b C 5 C C 1 5 1_555 A ASP 192 A ASP 138 8 1_555 A GLY 194 A GLY 140 8 1_555 A ARG 195 A ARG 141 8 1_555 A LYS 196 A LYS 142 8 1_555 A HOH 302 X HOH 8 1_555 A HOH 328 X HOH 8 1_555 b C 5 C C 1 8 1_555 b G 6 C G 2 8 1_555 A TYR 83 A TYR 29 1 1_555 A PGE 216 T PGE 1 1_555 A ILE 64 A ILE 10 3 1_555 A HOH 425 X HOH 3 2_656 A HOH 458 X HOH 3 1_555 A LYS 143 A LYS 89 4 1_555 A THR 173 A THR 119 4 1_555 A TYR 174 A TYR 120 4 1_555 A HOH 309 X HOH 4 1_555 A THR 148 A THR 94 5 1_555 A HOH 314 X HOH 5 1_555 C DT 4 D DT 4 5 1_555 C DG 5 D DG 5 5 1_555 C HOH 205 AA HOH 5 1_555 A ILE 80 A ILE 26 4 1_555 A PRO 99 A PRO 45 4 1_555 A HOH 324 X HOH 4 1_555 A HOH 359 X HOH 4 1_555 A TRP 65 A TRP 11 7 1_555 A GLU 66 A GLU 12 7 1_555 A SER 67 A SER 13 7 1_555 A ASP 87 A ASP 33 7 1_555 A LYS 127 A LYS 73 7 1_555 A GOL 215 S GOL 7 1_555 A HOH 383 X HOH 7 1_555 A HIS 115 A HIS 61 5 1_555 A ARG 118 A ARG 64 5 1_555 A ASN 170 A ASN 116 5 4_546 A GOL 213 Q GOL 5 1_555 A HOH 307 X HOH 5 1_555 A HIS 115 A HIS 61 9 1_555 A TYR 119 A TYR 65 9 1_555 A GLU 122 A GLU 68 9 1_555 A ARG 123 A ARG 69 9 1_555 A GLU 167 A GLU 113 9 4_546 A ASN 170 A ASN 116 9 4_546 A GOL 212 P GOL 9 1_555 A HOH 380 X HOH 9 4_546 A HOH 386 X HOH 9 1_555 A ILE 102 A ILE 48 6 1_555 A VAL 150 A VAL 96 6 1_555 A ASN 152 A ASN 98 6 1_555 A GLU 154 A GLU 100 6 1_555 A HOH 390 X HOH 6 1_555 C HOH 208 AA HOH 6 1_555 A GLU 66 A GLU 12 6 2_656 A SER 125 A SER 71 6 1_555 A LYS 127 A LYS 73 6 1_555 A EDO 211 O EDO 6 1_555 A HOH 336 X HOH 6 1_555 A HOH 383 X HOH 6 1_555 A GLN 134 A GLN 80 10 1_555 A LYS 180 A LYS 126 10 1_555 A GLN 182 A GLN 128 10 1_555 A THR 183 A THR 129 10 1_555 A ASP 184 A ASP 130 10 1_555 A IOD 205 I IOD 10 1_555 A HOH 413 X HOH 10 1_555 B A 3 B A 3 10 1_555 B U 4 B U 4 10 1_555 B HOH 203 Y HOH 10 1_555 A ASP 132 A ASP 78 6 1_555 A GLU 188 A GLU 134 6 1_555 A HOH 316 X HOH 6 1_555 B U 4 B U 4 6 1_555 B HOH 208 Y HOH 6 1_555 b C 5 C C 1 6 1_555 C DT 4 D DT 4 3 1_555 C DG 5 D DG 5 3 1_555 C HOH 213 AA HOH 3 1_555 A GLY 76 A GLY 22 8 1_555 A ASN 77 A ASN 23 8 1_555 A PRO 78 A PRO 24 8 1_555 A HOH 306 X HOH 8 1_555 B HOH 210 Y HOH 8 4_545 C DG 2 D DG 2 8 1_555 C DA 3 D DA 3 8 1_555 C HOH 217 AA HOH 8 1_555 5 C 1 2 1