0.012259
0.000000
0.001335
0.000000
0.026393
0.000000
0.000000
0.000000
0.016160
0.000000
0.000000
0.000000
Samara, N.L.
Yang, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
96.220
90.000
81.574
37.889
62.247
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
N
C
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
N
163
N
N
Y
164
N
N
Y
165
N
C
Y
166
N
N
Y
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
N
194
N
N
N
195
N
C
N
196
N
O
N
197
N
N
N
198
N
C
N
199
N
N
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
O
N
217
N
P
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
C
N
222
R
C
N
223
N
O
N
224
S
C
N
225
N
O
N
226
N
C
N
227
R
C
Y
228
N
N
Y
229
N
C
Y
230
N
N
Y
231
N
C
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
N
N
237
N
N
Y
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
O
N
254
N
P
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
C
N
259
R
C
N
260
N
O
N
261
S
C
N
262
N
O
N
263
N
C
N
264
R
C
N
265
N
N
N
266
N
C
N
267
N
O
N
268
N
N
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
O
N
300
N
P
N
301
N
O
N
302
N
O
N
303
N
O
N
304
N
C
N
305
R
C
N
306
N
O
N
307
S
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
R
C
Y
312
N
N
Y
313
N
C
Y
314
N
N
Y
315
N
C
N
316
N
C
N
317
N
O
N
318
N
N
N
319
N
C
N
320
N
N
N
321
N
N
Y
322
N
C
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
N
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
N
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
S
C
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
I
N
447
N
K
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
C
N
478
N
N
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
N
C
N
500
N
C
N
501
N
S
N
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
MG
N
516
N
C
N
517
N
O
N
518
N
C
N
519
N
O
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
C
N
524
N
C
N
525
N
O
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
N
N
541
S
C
N
542
N
C
N
543
N
O
N
544
N
C
Y
545
N
C
Y
546
N
C
Y
547
N
C
Y
548
N
C
Y
549
N
C
Y
550
N
C
N
551
N
O
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
N
N
564
S
C
N
565
N
C
N
566
N
O
N
567
N
C
N
568
N
C
N
569
N
C
N
570
N
O
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
N
N
581
S
C
N
582
N
C
N
583
N
O
N
584
N
C
N
585
N
O
N
586
N
O
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
N
N
595
S
C
N
596
N
C
N
597
N
O
N
598
R
C
N
599
N
O
N
600
N
C
N
601
N
O
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
N
N
612
S
C
N
613
N
C
N
614
N
O
N
615
N
C
Y
616
N
C
Y
617
N
C
Y
618
N
C
Y
619
N
N
Y
620
N
C
Y
621
N
C
Y
622
N
C
Y
623
N
C
Y
624
N
C
N
625
N
O
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
N
N
639
S
C
N
640
N
C
N
641
N
O
N
642
N
C
Y
643
N
C
Y
644
N
C
Y
645
N
C
Y
646
N
C
Y
647
N
C
Y
648
N
C
N
649
N
O
N
650
N
O
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
O
N
663
N
P
N
664
N
O
N
665
N
O
N
666
N
O
N
667
N
C
N
668
R
C
N
669
N
O
N
670
S
C
N
671
N
O
N
672
R
C
N
673
N
O
N
674
R
C
N
675
N
N
N
676
N
C
N
677
N
O
N
678
N
N
N
679
N
C
N
680
N
O
N
681
N
C
N
682
N
C
N
683
N
H
N
684
N
H
N
685
N
H
N
686
N
H
N
687
N
H
N
688
N
H
N
689
N
H
N
690
N
H
N
691
N
H
N
692
N
H
N
693
N
H
N
694
N
H
N
695
N
H
N
696
N
N
N
697
S
C
N
698
N
C
N
699
N
O
N
700
N
C
N
701
N
C
N
702
N
C
N
703
N
O
N
704
N
H
N
705
N
H
N
706
N
H
N
707
N
H
N
708
N
H
N
709
N
H
N
710
N
H
N
711
N
H
N
712
N
H
N
713
N
H
N
714
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
Y
173
N
sing
Y
174
N
doub
N
175
N
sing
Y
176
N
doub
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
N
181
N
sing
Y
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
sing
Y
242
N
sing
Y
243
N
doub
N
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
doub
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
sing
Y
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
sing
Y
414
N
doub
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
doub
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
Y
544
N
doub
Y
545
N
sing
Y
546
N
sing
N
547
N
sing
Y
548
N
doub
N
549
N
sing
Y
550
N
doub
N
551
N
sing
Y
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
doub
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
doub
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
doub
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
doub
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
Y
613
N
doub
Y
614
N
sing
Y
615
N
sing
N
616
N
sing
Y
617
N
doub
Y
618
N
sing
Y
619
N
sing
N
620
N
sing
Y
621
N
sing
Y
622
N
doub
N
623
N
sing
Y
624
N
doub
N
625
N
sing
Y
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
doub
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
Y
641
N
doub
Y
642
N
sing
Y
643
N
sing
N
644
N
sing
Y
645
N
doub
N
646
N
sing
Y
647
N
doub
N
648
N
sing
Y
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
doub
N
657
N
sing
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
doub
N
681
N
sing
N
682
N
sing
N
683
N
sing
N
684
N
doub
N
685
N
sing
N
686
N
doub
N
687
N
sing
N
688
N
sing
N
689
N
sing
N
690
N
sing
N
691
N
sing
N
692
N
sing
N
693
N
sing
N
694
N
sing
N
695
N
doub
N
696
N
sing
N
697
N
sing
N
698
N
sing
N
699
N
sing
N
700
N
sing
N
701
N
sing
N
702
N
sing
N
703
N
sing
N
704
N
sing
N
705
N
sing
N
706
N
sing
US
Nat. Struct. Mol. Biol.
1545-9985
25
715
721
10.1038/s41594-018-0099-4
30076410
Cation trafficking propels RNA hydrolysis.
2018
0000-0002-3591-2195
10.2210/pdb6dog/pdb
pdb_00006dog
100
1
CCD
2013-07-28
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
22-BM
APS
1
SYNCHROTRON
APS BEAMLINE 22-BM
16330.462
Ribonuclease H
3.1.26.4
Catalytic Domain
1
man
polymer
1224.802
RNA (5'-R(*AP*CP*AP*U)-3')
1
syn
polymer
605.430
RNA (5'-R(P*CP*G)-3')
1
syn
polymer
1824.228
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3')
1
syn
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
39.098
POTASSIUM ION
3
syn
non-polymer
126.904
IODIDE ION
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
4
syn
non-polymer
92.094
GLYCEROL
5
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
196
nat
water
RNase H
no
no
GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ
TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ
TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
A
polypeptide(L)
no
no
ACAU
ACAU
B
polyribonucleotide
no
no
CG
CG
b
polyribonucleotide
no
no
(DC)(DG)(DA)(DT)(DG)(DT)
CGATGT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125
sample
1
142
rnhA, BH0863
272558
Bacillus halodurans
562
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pET15b
1
2.46
50.05
0.000
VAPOR DIFFUSION, HANGING DROP
14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2
294
-5.946
1
20
B
1
C
6
-0.553
B_A1:DT6_C
1
-5.315
0.128
-0.161
-0.122
2.944
1
19
B
2
C
5
2.457
B_C2:DG5_C
2
-12.126
0.177
0.045
-0.136
-6.181
1
20
B
3
C
4
1.916
B_A3:DT4_C
3
-10.743
0.090
-0.212
-0.160
-1.355
1
20
B
4
C
3
2.669
B_U4:DA3_C
4
-13.370
0.018
0.021
-0.160
-6.333
1
19
b
5
C
2
0.714
b_C5:DG2_C
5
-8.524
0.124
0.114
-0.246
-5.435
1
19
b
6
C
1
-0.657
b_G6:DC1_C
6
-6.096
-0.248
-0.111
-0.099
3.022
35.925
B
B
1
2
5.531
C
C
6
5
3.163
3.406
0.722
-1.068
BB_A1C2:DG5DT6_CC
1
-1.378
2.238
35.743
-2.193
-1.358
2.599
29.031
B
B
2
3
23.830
C
C
5
4
3.490
11.613
-0.437
-1.448
BB_C2A3:DT4DG5_CC
2
2.147
-4.406
26.567
-5.378
1.332
3.122
25.608
B
B
3
4
5.712
C
C
4
3
3.282
2.526
1.098
-2.125
BB_A3U4:DA3DT4_CC
3
1.608
-3.635
25.435
-5.498
-2.030
2.925
33.383
B
b
4
5
10.721
C
C
3
2
3.340
6.124
-0.257
-1.964
Bb_U4C5:DG2DA3_CC
4
1.161
-2.033
32.812
-4.400
0.634
3.035
22.908
b
b
5
6
11.583
C
C
2
1
3.380
4.517
0.962
-2.114
bb_C5G6:DC1DG2_CC
5
6.017
-15.428
21.653
-6.939
-0.269
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2018-08-15
1
1
2023-10-11
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
N
RCSB
Y
RCSB
2018-06-09
REL
REL
The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal.
Cleavage of RNA by B. Halodurans Ribonuclease H1
undefined
1
A
O
HOH
458
6.16
MG
MG
SUBJECT OF INVESTIGATION
K
K
SUBJECT OF INVESTIGATION
MG
MAGNESIUM ION
K
POTASSIUM ION
IOD
IODIDE ION
EDO
1,2-ETHANEDIOL
GOL
GLYCEROL
PGE
TRIETHYLENE GLYCOL
HOH
water
32630
synthetic construct
sample
1
4
32630
synthetic construct
sample
1
2
32630
synthetic construct
sample
1
6
1ZBL
pdbid 1ZBL
PDB
experimental model
MG
201
5
MG
MG
201
A
MG
202
5
MG
MG
202
A
K
211
6
K
K
203
A
IOD
1
7
IOD
IOD
204
A
IOD
2
7
IOD
IOD
205
A
IOD
3
7
IOD
IOD
206
A
IOD
4
7
IOD
IOD
207
A
EDO
1
8
EDO
EDO
208
A
EDO
2
8
EDO
EDO
209
A
EDO
3
8
EDO
EDO
210
A
EDO
4
8
EDO
EDO
211
A
GOL
6
9
GOL
GOL
212
A
GOL
7
9
GOL
GOL
213
A
GOL
8
9
GOL
GOL
214
A
GOL
9
9
GOL
GOL
215
A
PGE
10
10
PGE
PGE
216
A
K
212
6
K
K
217
A
K
213
6
K
K
101
C
GOL
5
9
GOL
GOL
102
C
HOH
134
11
HOH
HOH
301
A
HOH
88
11
HOH
HOH
302
A
HOH
105
11
HOH
HOH
303
A
HOH
140
11
HOH
HOH
304
A
HOH
101
11
HOH
HOH
305
A
HOH
161
11
HOH
HOH
306
A
HOH
114
11
HOH
HOH
307
A
HOH
9
11
HOH
HOH
308
A
HOH
93
11
HOH
HOH
309
A
HOH
36
11
HOH
HOH
310
A
HOH
75
11
HOH
HOH
311
A
HOH
94
11
HOH
HOH
312
A
HOH
79
11
HOH
HOH
313
A
HOH
29
11
HOH
HOH
314
A
HOH
181
11
HOH
HOH
315
A
HOH
118
11
HOH
HOH
316
A
HOH
111
11
HOH
HOH
317
A
HOH
55
11
HOH
HOH
318
A
HOH
157
11
HOH
HOH
319
A
HOH
116
11
HOH
HOH
320
A
HOH
173
11
HOH
HOH
321
A
HOH
11
11
HOH
HOH
322
A
HOH
64
11
HOH
HOH
323
A
HOH
63
11
HOH
HOH
324
A
HOH
180
11
HOH
HOH
325
A
HOH
20
11
HOH
HOH
326
A
HOH
53
11
HOH
HOH
327
A
HOH
117
11
HOH
HOH
328
A
HOH
145
11
HOH
HOH
329
A
HOH
66
11
HOH
HOH
330
A
HOH
61
11
HOH
HOH
331
A
HOH
163
11
HOH
HOH
332
A
HOH
51
11
HOH
HOH
333
A
HOH
155
11
HOH
HOH
334
A
HOH
133
11
HOH
HOH
335
A
HOH
62
11
HOH
HOH
336
A
HOH
185
11
HOH
HOH
337
A
HOH
13
11
HOH
HOH
338
A
HOH
17
11
HOH
HOH
339
A
HOH
131
11
HOH
HOH
340
A
HOH
35
11
HOH
HOH
341
A
HOH
102
11
HOH
HOH
342
A
HOH
19
11
HOH
HOH
343
A
HOH
59
11
HOH
HOH
344
A
HOH
40
11
HOH
HOH
345
A
HOH
122
11
HOH
HOH
346
A
HOH
107
11
HOH
HOH
347
A
HOH
15
11
HOH
HOH
348
A
HOH
42
11
HOH
HOH
349
A
HOH
60
11
HOH
HOH
350
A
HOH
52
11
HOH
HOH
351
A
HOH
192
11
HOH
HOH
352
A
HOH
127
11
HOH
HOH
353
A
HOH
150
11
HOH
HOH
354
A
HOH
1
11
HOH
HOH
355
A
HOH
28
11
HOH
HOH
356
A
HOH
149
11
HOH
HOH
357
A
HOH
10
11
HOH
HOH
358
A
HOH
41
11
HOH
HOH
359
A
HOH
165
11
HOH
HOH
360
A
HOH
38
11
HOH
HOH
361
A
HOH
43
11
HOH
HOH
362
A
HOH
56
11
HOH
HOH
363
A
HOH
34
11
HOH
HOH
364
A
HOH
120
11
HOH
HOH
365
A
HOH
32
11
HOH
HOH
366
A
HOH
99
11
HOH
HOH
367
A
HOH
21
11
HOH
HOH
368
A
HOH
177
11
HOH
HOH
369
A
HOH
84
11
HOH
HOH
370
A
HOH
82
11
HOH
HOH
371
A
HOH
189
11
HOH
HOH
372
A
HOH
46
11
HOH
HOH
373
A
HOH
27
11
HOH
HOH
374
A
HOH
14
11
HOH
HOH
375
A
HOH
72
11
HOH
HOH
376
A
HOH
141
11
HOH
HOH
377
A
HOH
54
11
HOH
HOH
378
A
HOH
44
11
HOH
HOH
379
A
HOH
95
11
HOH
HOH
380
A
HOH
96
11
HOH
HOH
381
A
HOH
142
11
HOH
HOH
382
A
HOH
179
11
HOH
HOH
383
A
HOH
23
11
HOH
HOH
384
A
HOH
8
11
HOH
HOH
385
A
HOH
45
11
HOH
HOH
386
A
HOH
7
11
HOH
HOH
387
A
HOH
146
11
HOH
HOH
388
A
HOH
25
11
HOH
HOH
389
A
HOH
81
11
HOH
HOH
390
A
HOH
3
11
HOH
HOH
391
A
HOH
113
11
HOH
HOH
392
A
HOH
92
11
HOH
HOH
393
A
HOH
22
11
HOH
HOH
394
A
HOH
178
11
HOH
HOH
395
A
HOH
48
11
HOH
HOH
396
A
HOH
166
11
HOH
HOH
397
A
HOH
153
11
HOH
HOH
398
A
HOH
195
11
HOH
HOH
399
A
HOH
50
11
HOH
HOH
400
A
HOH
139
11
HOH
HOH
401
A
HOH
37
11
HOH
HOH
402
A
HOH
182
11
HOH
HOH
403
A
HOH
108
11
HOH
HOH
404
A
HOH
67
11
HOH
HOH
405
A
HOH
193
11
HOH
HOH
406
A
HOH
138
11
HOH
HOH
407
A
HOH
2
11
HOH
HOH
408
A
HOH
57
11
HOH
HOH
409
A
HOH
91
11
HOH
HOH
410
A
HOH
158
11
HOH
HOH
411
A
HOH
78
11
HOH
HOH
412
A
HOH
110
11
HOH
HOH
413
A
HOH
24
11
HOH
HOH
414
A
HOH
80
11
HOH
HOH
415
A
HOH
5
11
HOH
HOH
416
A
HOH
6
11
HOH
HOH
417
A
HOH
151
11
HOH
HOH
418
A
HOH
154
11
HOH
HOH
419
A
HOH
103
11
HOH
HOH
420
A
HOH
147
11
HOH
HOH
421
A
HOH
49
11
HOH
HOH
422
A
HOH
152
11
HOH
HOH
423
A
HOH
156
11
HOH
HOH
424
A
HOH
71
11
HOH
HOH
425
A
HOH
176
11
HOH
HOH
426
A
HOH
144
11
HOH
HOH
427
A
HOH
123
11
HOH
HOH
428
A
HOH
137
11
HOH
HOH
429
A
HOH
89
11
HOH
HOH
430
A
HOH
167
11
HOH
HOH
431
A
HOH
76
11
HOH
HOH
432
A
HOH
143
11
HOH
HOH
433
A
HOH
132
11
HOH
HOH
434
A
HOH
58
11
HOH
HOH
435
A
HOH
90
11
HOH
HOH
436
A
HOH
184
11
HOH
HOH
437
A
HOH
135
11
HOH
HOH
438
A
HOH
183
11
HOH
HOH
439
A
HOH
164
11
HOH
HOH
440
A
HOH
148
11
HOH
HOH
441
A
HOH
121
11
HOH
HOH
442
A
HOH
74
11
HOH
HOH
443
A
HOH
83
11
HOH
HOH
444
A
HOH
77
11
HOH
HOH
445
A
HOH
125
11
HOH
HOH
446
A
HOH
39
11
HOH
HOH
447
A
HOH
47
11
HOH
HOH
448
A
HOH
97
11
HOH
HOH
449
A
HOH
128
11
HOH
HOH
450
A
HOH
196
11
HOH
HOH
451
A
HOH
33
11
HOH
HOH
452
A
HOH
30
11
HOH
HOH
453
A
HOH
87
11
HOH
HOH
454
A
HOH
26
11
HOH
HOH
455
A
HOH
106
11
HOH
HOH
456
A
HOH
65
11
HOH
HOH
457
A
HOH
86
11
HOH
HOH
458
A
HOH
85
11
HOH
HOH
201
B
HOH
112
11
HOH
HOH
202
B
HOH
194
11
HOH
HOH
203
B
HOH
175
11
HOH
HOH
204
B
HOH
115
11
HOH
HOH
205
B
HOH
16
11
HOH
HOH
206
B
HOH
69
11
HOH
HOH
207
B
HOH
98
11
HOH
HOH
208
B
HOH
190
11
HOH
HOH
209
B
HOH
188
11
HOH
HOH
210
B
HOH
169
11
HOH
HOH
211
B
HOH
162
11
HOH
HOH
212
B
HOH
104
11
HOH
HOH
101
b
HOH
119
11
HOH
HOH
102
b
HOH
100
11
HOH
HOH
103
b
HOH
126
11
HOH
HOH
104
b
HOH
174
11
HOH
HOH
201
C
HOH
130
11
HOH
HOH
202
C
HOH
12
11
HOH
HOH
203
C
HOH
171
11
HOH
HOH
204
C
HOH
129
11
HOH
HOH
205
C
HOH
191
11
HOH
HOH
206
C
HOH
170
11
HOH
HOH
207
C
HOH
136
11
HOH
HOH
208
C
HOH
70
11
HOH
HOH
209
C
HOH
4
11
HOH
HOH
210
C
HOH
172
11
HOH
HOH
211
C
HOH
18
11
HOH
HOH
212
C
HOH
109
11
HOH
HOH
213
C
HOH
31
11
HOH
HOH
214
C
HOH
68
11
HOH
HOH
215
C
HOH
168
11
HOH
HOH
216
C
HOH
160
11
HOH
HOH
217
C
HOH
187
11
HOH
HOH
218
C
HOH
73
11
HOH
HOH
219
C
HOH
186
11
HOH
HOH
220
C
HOH
124
11
HOH
HOH
221
C
HOH
159
11
HOH
HOH
222
C
n
1
55
A
n
2
56
A
n
3
57
A
n
4
58
A
n
5
59
A
n
6
60
A
GLU
61
n
7
GLU
61
A
GLU
62
n
8
GLU
62
A
ILE
63
n
9
ILE
63
A
ILE
64
n
10
ILE
64
A
TRP
65
n
11
TRP
65
A
GLU
66
n
12
GLU
66
A
SER
67
n
13
SER
67
A
LEU
68
n
14
LEU
68
A
SER
69
n
15
SER
69
A
VAL
70
n
16
VAL
70
A
ASP
71
n
17
ASP
71
A
VAL
72
n
18
VAL
72
A
GLY
73
n
19
GLY
73
A
SER
74
n
20
SER
74
A
GLN
75
n
21
GLN
75
A
GLY
76
n
22
GLY
76
A
ASN
77
n
23
ASN
77
A
PRO
78
n
24
PRO
78
A
GLY
79
n
25
GLY
79
A
ILE
80
n
26
ILE
80
A
VAL
81
n
27
VAL
81
A
GLU
82
n
28
GLU
82
A
TYR
83
n
29
TYR
83
A
LYS
84
n
30
LYS
84
A
GLY
85
n
31
GLY
85
A
VAL
86
n
32
VAL
86
A
ASP
87
n
33
ASP
87
A
THR
88
n
34
THR
88
A
LYS
89
n
35
LYS
89
A
THR
90
n
36
THR
90
A
GLY
91
n
37
GLY
91
A
GLU
92
n
38
GLU
92
A
VAL
93
n
39
VAL
93
A
LEU
94
n
40
LEU
94
A
PHE
95
n
41
PHE
95
A
GLU
96
n
42
GLU
96
A
ARG
97
n
43
ARG
97
A
GLU
98
n
44
GLU
98
A
PRO
99
n
45
PRO
99
A
ILE
100
n
46
ILE
100
A
PRO
101
n
47
PRO
101
A
ILE
102
n
48
ILE
102
A
GLY
103
n
49
GLY
103
A
THR
104
n
50
THR
104
A
ASN
105
n
51
ASN
105
A
ASN
106
n
52
ASN
106
A
MET
107
n
53
MET
107
A
GLY
108
n
54
GLY
108
A
GLU
109
n
55
GLU
109
A
PHE
110
n
56
PHE
110
A
LEU
111
n
57
LEU
111
A
ALA
112
n
58
ALA
112
A
ILE
113
n
59
ILE
113
A
VAL
114
n
60
VAL
114
A
HIS
115
n
61
HIS
115
A
GLY
116
n
62
GLY
116
A
LEU
117
n
63
LEU
117
A
ARG
118
n
64
ARG
118
A
TYR
119
n
65
TYR
119
A
LEU
120
n
66
LEU
120
A
LYS
121
n
67
LYS
121
A
GLU
122
n
68
GLU
122
A
ARG
123
n
69
ARG
123
A
ASN
124
n
70
ASN
124
A
SER
125
n
71
SER
125
A
ARG
126
n
72
ARG
126
A
LYS
127
n
73
LYS
127
A
PRO
128
n
74
PRO
128
A
ILE
129
n
75
ILE
129
A
TYR
130
n
76
TYR
130
A
SER
131
n
77
SER
131
A
ASP
132
n
78
ASP
132
A
SER
133
n
79
SER
133
A
GLN
134
n
80
GLN
134
A
THR
135
n
81
THR
135
A
ALA
136
n
82
ALA
136
A
ILE
137
n
83
ILE
137
A
LYS
138
n
84
LYS
138
A
TRP
139
n
85
TRP
139
A
VAL
140
n
86
VAL
140
A
LYS
141
n
87
LYS
141
A
ASP
142
n
88
ASP
142
A
LYS
143
n
89
LYS
143
A
LYS
144
n
90
LYS
144
A
ALA
145
n
91
ALA
145
A
LYS
146
n
92
LYS
146
A
SER
147
n
93
SER
147
A
THR
148
n
94
THR
148
A
LEU
149
n
95
LEU
149
A
VAL
150
n
96
VAL
150
A
ARG
151
n
97
ARG
151
A
ASN
152
n
98
ASN
152
A
GLU
153
n
99
GLU
153
A
GLU
154
n
100
GLU
154
A
THR
155
n
101
THR
155
A
ALA
156
n
102
ALA
156
A
LEU
157
n
103
LEU
157
A
ILE
158
n
104
ILE
158
A
TRP
159
n
105
TRP
159
A
LYS
160
n
106
LYS
160
A
LEU
161
n
107
LEU
161
A
VAL
162
n
108
VAL
162
A
ASP
163
n
109
ASP
163
A
GLU
164
n
110
GLU
164
A
ALA
165
n
111
ALA
165
A
GLU
166
n
112
GLU
166
A
GLU
167
n
113
GLU
167
A
TRP
168
n
114
TRP
168
A
LEU
169
n
115
LEU
169
A
ASN
170
n
116
ASN
170
A
THR
171
n
117
THR
171
A
HIS
172
n
118
HIS
172
A
THR
173
n
119
THR
173
A
TYR
174
n
120
TYR
174
A
GLU
175
n
121
GLU
175
A
THR
176
n
122
THR
176
A
PRO
177
n
123
PRO
177
A
ILE
178
n
124
ILE
178
A
LEU
179
n
125
LEU
179
A
LYS
180
n
126
LYS
180
A
TRP
181
n
127
TRP
181
A
GLN
182
n
128
GLN
182
A
THR
183
n
129
THR
183
A
ASP
184
n
130
ASP
184
A
LYS
185
n
131
LYS
185
A
TRP
186
n
132
TRP
186
A
GLY
187
n
133
GLY
187
A
GLU
188
n
134
GLU
188
A
ILE
189
n
135
ILE
189
A
LYS
190
n
136
LYS
190
A
ALA
191
n
137
ALA
191
A
ASP
192
n
138
ASP
192
A
TYR
193
n
139
TYR
193
A
GLY
194
n
140
GLY
194
A
ARG
195
n
141
ARG
195
A
LYS
196
n
142
LYS
196
A
A
1
n
1
A
1
B
C
2
n
2
C
2
B
A
3
n
3
A
3
B
U
4
n
4
U
4
B
C
5
n
1
C
5
b
G
6
n
2
G
6
b
DC
1
n
1
DC
1
C
DG
2
n
2
DG
2
C
DA
3
n
3
DA
3
C
DT
4
n
4
DT
4
C
DG
5
n
5
DG
5
C
DT
6
n
6
DT
6
C
5.8451
-1.6086
1.5370
1.6410
-0.3729
3.5243
0.2319
0.1702
-0.2038
-0.1618
-0.1513
-0.0769
0.3482
0.1712
-0.0735
0.1503
0.0210
0.0196
0.0860
0.0122
0.1227
refined
25.549
-5.591
17.451
X-RAY DIFFRACTION
3.8351
-1.0303
-3.0648
4.0694
1.3857
5.7064
-0.0362
-0.3282
-1.0557
0.1169
-0.0040
-0.4732
0.7826
0.3773
0.0488
0.2175
0.0638
0.0110
0.1581
0.0585
0.2840
refined
28.186
-11.579
24.053
X-RAY DIFFRACTION
3.2929
-0.0118
1.4592
0.9637
0.2560
3.0323
0.0771
-0.2100
-0.0808
-0.0362
-0.0956
0.0275
0.0575
-0.2358
0.0111
0.0870
0.0129
0.0203
0.0780
0.0055
0.0875
refined
21.716
-1.218
23.441
X-RAY DIFFRACTION
3.8599
-3.1762
0.0558
6.0415
-0.4703
6.7919
0.2196
0.1721
0.4261
-0.2675
-0.2013
-0.2849
-0.8356
0.0974
-0.0287
0.2414
0.0092
0.0371
0.0938
0.0303
0.1629
refined
23.877
9.389
16.644
X-RAY DIFFRACTION
4.6311
0.4226
2.0731
2.5284
0.1801
2.3722
0.2206
-0.0392
0.3719
-0.0930
-0.3367
0.3907
-0.4576
-0.8718
0.2299
0.2927
0.3270
-0.0280
0.4132
-0.1277
0.2136
refined
8.521
7.452
16.160
X-RAY DIFFRACTION
7.3427
0.8670
5.8639
1.8557
1.6539
5.7527
0.1756
-0.2428
0.0715
0.0198
-0.2866
0.1766
-0.1151
-0.6524
0.0971
0.1345
0.0689
0.0271
0.2208
-0.0367
0.1304
refined
12.445
5.745
24.903
X-RAY DIFFRACTION
3.0567
-0.3438
-0.9859
2.7897
1.1919
5.0413
0.0889
0.2478
-0.1197
-0.3956
-0.0437
-0.1870
0.0412
0.2337
-0.0952
0.1259
0.0530
0.0056
0.1160
0.0362
0.0839
refined
28.952
-0.835
17.830
X-RAY DIFFRACTION
2.8145
0.2234
1.4625
6.5024
-1.2101
1.1453
-0.1414
0.1383
-0.1621
-0.6881
-0.1851
-0.2272
0.1528
0.1231
0.3440
0.3143
0.0752
0.0391
0.2274
0.0143
0.1306
refined
23.776
0.746
5.147
X-RAY DIFFRACTION
3.0505
-1.1167
-2.8641
2.8056
0.6852
3.9317
-0.1401
0.4189
-0.2119
-0.9042
-0.2831
0.2753
-0.3482
-0.3209
0.3670
0.3998
0.0840
-0.0359
0.2010
-0.0084
0.1498
refined
16.453
3.435
3.284
X-RAY DIFFRACTION
A
61
A
87
X-RAY DIFFRACTION
1
( CHAIN A AND RESID 61:87 )
A
88
A
96
X-RAY DIFFRACTION
2
( CHAIN A AND RESID 88:96 )
A
97
A
133
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 97:133 )
A
134
A
142
X-RAY DIFFRACTION
4
( CHAIN A AND RESID 134:142 )
A
143
A
155
X-RAY DIFFRACTION
5
( CHAIN A AND RESID 143:155 )
A
156
A
169
X-RAY DIFFRACTION
6
( CHAIN A AND RESID 156:169 )
A
170
A
196
X-RAY DIFFRACTION
7
( CHAIN A AND RESID 170:196 )
B
1
B
4
X-RAY DIFFRACTION
8
( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )
b
5
b
6
X-RAY DIFFRACTION
8
( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )
C
1
C
6
X-RAY DIFFRACTION
9
( CHAIN C AND RESID 1:6 )
author_and_software_defined_assembly
PISA
4
tetrameric
none
6980
-28
7470
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
192
A
OD1
ASP
138
1_555
106.6
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
302
C
X
O
HOH
1_555
174.1
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
302
C
X
O
HOH
1_555
76.6
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
310
X
O
HOH
1_555
90.1
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
310
X
O
HOH
1_555
90.5
A
HOH
302
C
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
310
X
O
HOH
1_555
84.9
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
323
X
O
HOH
1_555
88.1
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
323
X
O
HOH
1_555
87.7
A
HOH
302
C
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
323
X
O
HOH
1_555
97.0
A
HOH
310
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
323
X
O
HOH
1_555
177.0
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
159.5
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
93.9
A
HOH
302
C
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
18.2
A
HOH
310
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
90.4
A
HOH
323
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
92.1
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
95.9
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
156.7
A
HOH
302
C
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
81.5
A
HOH
310
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
95.8
A
HOH
323
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
86.8
b
C
5
B
C
OP3
C
1
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
63.7
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
98.4
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
152.9
A
HOH
302
C
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
79.4
A
HOH
310
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
99.9
A
HOH
323
X
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
82.7
b
C
5
B
C
OP3
C
1
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
61.3
b
C
5
B
C
OP1
C
1
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
4.9
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
A
GLU
109
A
OE1
GLU
55
1_555
96.9
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD1
ASP
78
1_555
128.9
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD1
ASP
78
1_555
96.5
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
102.3
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
149.0
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
52.5
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
153.1
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
90.3
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
75.4
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
83.5
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
90.9
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
109.7
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
129.4
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
94.3
B
U
4
C
B
O3'
U
4
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
62.3
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
91.6
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
115.6
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
125.3
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
88.2
B
U
4
C
B
O3'
U
4
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
62.1
b
C
5
B
C
OP1
C
1
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
6.1
A
ASP
132
A
OD2
ASP
78
1_555
A
K
217
B
U
K
K
1_555
A
HOH
323
X
O
HOH
1_555
46.2
A
ASP
132
A
OD2
ASP
78
1_555
A
K
217
B
U
K
K
1_555
A
HOH
368
X
O
HOH
1_555
53.7
A
HOH
323
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
A
HOH
368
X
O
HOH
1_555
60.0
A
ASP
132
A
OD2
ASP
78
1_555
A
K
217
B
U
K
K
1_555
B
HOH
208
Y
O
HOH
1_555
154.2
A
HOH
323
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
B
HOH
208
Y
O
HOH
1_555
156.0
A
HOH
368
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
B
HOH
208
Y
O
HOH
1_555
116.8
A
ASP
132
A
OD2
ASP
78
1_555
A
K
217
B
U
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
85.5
A
HOH
323
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
71.8
A
HOH
368
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
130.5
B
HOH
208
Y
O
HOH
1_555
A
K
217
B
U
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
111.7
A
ASP
132
A
OD2
ASP
78
1_555
A
K
217
B
U
K
K
1_555
b
HOH
101
Z
O
HOH
1_555
136.4
A
HOH
323
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
b
HOH
101
Z
O
HOH
1_555
120.2
A
HOH
368
X
O
HOH
1_555
A
K
217
B
U
K
K
1_555
b
HOH
101
Z
O
HOH
1_555
167.9
B
HOH
208
Y
O
HOH
1_555
A
K
217
B
U
K
K
1_555
b
HOH
101
Z
O
HOH
1_555
57.5
b
C
5
B
C
OP2
C
1
1_555
A
K
217
B
U
K
K
1_555
b
HOH
101
Z
O
HOH
1_555
54.3
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
ASP
192
A
OD2
ASP
138
1_555
40.9
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
HOH
302
C
X
O
HOH
1_555
50.4
A
ASP
192
A
OD2
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
HOH
302
C
X
O
HOH
1_555
83.9
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
HOH
310
X
O
HOH
1_555
56.6
A
ASP
192
A
OD2
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
HOH
310
X
O
HOH
1_555
95.1
A
HOH
302
C
X
O
HOH
1_555
A
K
203
C
G
K
K
1_555
A
HOH
310
X
O
HOH
1_555
51.4
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
HOH
328
X
O
HOH
1_555
78.5
A
ASP
192
A
OD2
ASP
138
1_555
A
K
203
C
G
K
K
1_555
A
HOH
328
X
O
HOH
1_555
52.4
A
HOH
302
C
X
O
HOH
1_555
A
K
203
C
G
K
K
1_555
A
HOH
328
X
O
HOH
1_555
85.6
A
HOH
310
X
O
HOH
1_555
A
K
203
C
G
K
K
1_555
A
HOH
328
X
O
HOH
1_555
130.7
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
C
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
100.3
A
ASP
192
A
OD2
ASP
138
1_555
A
K
203
C
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
141.0
A
HOH
302
C
X
O
HOH
1_555
A
K
203
C
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
60.8
A
HOH
310
X
O
HOH
1_555
A
K
203
C
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
50.8
A
HOH
328
X
O
HOH
1_555
A
K
203
C
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
132.2
A
HOH
428
X
O
HOH
4_555
C
K
101
A
V
K
K
1_555
C
DT
4
D
O4
DT
4
1_555
96.7
A
HOH
428
X
O
HOH
4_555
C
K
101
A
V
K
K
1_555
C
DG
5
D
O6
DG
5
1_555
165.6
C
DT
4
D
O4
DT
4
1_555
C
K
101
A
V
K
K
1_555
C
DG
5
D
O6
DG
5
1_555
75.7
A
HOH
428
X
O
HOH
4_555
C
K
101
A
V
K
K
1_555
C
HOH
210
AA
O
HOH
1_555
81.5
C
DT
4
D
O4
DT
4
1_555
C
K
101
A
V
K
K
1_555
C
HOH
210
AA
O
HOH
1_555
85.5
C
DG
5
D
O6
DG
5
1_555
C
K
101
A
V
K
K
1_555
C
HOH
210
AA
O
HOH
1_555
85.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
100
A
O
ILE
46
A
N
VAL
81
A
N
VAL
27
A
O
VAL
86
A
O
VAL
32
A
N
SER
69
A
N
SER
15
A
N
LEU
68
A
N
LEU
14
A
O
TYR
130
A
O
TYR
76
A
N
ILE
129
A
N
ILE
75
A
O
LEU
179
A
O
LEU
125
1
B
O2'
A
1
B
O2'
A
1
1
Y
1
b
O2'
G
6
C
O2'
G
2
1
Y
1
A
GLY
55
A
GLY
1
1
Y
1
A
SER
56
A
SER
2
1
Y
1
A
HIS
57
A
HIS
3
1
Y
1
A
MET
58
A
MET
4
1
Y
1
A
ALA
59
A
ALA
5
1
Y
1
A
LYS
60
A
LYS
6
1
Y
1
A
A
O2
O1
EDO
GOL
211
215
1.26
1
A
A
OE2
O
GLU
HOH
175
301
2.07
1
C
C
O2
O
DC
HOH
1
201
2.17
1
1.92
0.30
108.30
110.22
C
C
C
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
b
b
P
OP3
C
C
5
5
-0.135
0.012
1.607
1.472
B
B
N
1
A
A
O
O
HOH
HOH
301
301
1.74
1_555
2_656
1
A
A
O
O
HOH
HOH
395
395
1.84
1_555
2_656
79.360
25.4263
9.520
Structures refined in Phenix and nucleic acid and protein residues built in Coot
0.1831
0.1610
0.1621
1.2850
20.27
2290
47261
4.8500
97.6500
0.1200
1
THROUGHOUT
1.370
18.2600
0.9000
1.1100
pdbid 1ZBL
1.2850
20.27
196
1615
49.09
38.67
65
244
1110
148
0.008
1514
1.104
2062
0.078
225
0.007
213
24.069
593
0.2802
0.0000
0.2942
1.3127
107
2153
2260
16
76.0000
0.2729
0.0000
0.2630
1.3433
120
2838
2958
16
99.0000
0.2920
0.0000
0.2395
1.3768
133
2863
2996
16
100.0000
0.2809
0.0000
0.2321
1.4141
162
2852
3014
16
100.0000
0.2220
0.0000
0.2144
1.4557
156
2883
3039
16
100.0000
0.2155
0.0000
0.1901
1.5026
149
2808
2957
16
100.0000
0.1989
0.0000
0.1747
1.5563
156
2872
3028
16
100.0000
0.1621
0.0000
0.1608
1.6186
160
2839
2999
16
100.0000
0.1630
0.0000
0.1559
1.6922
136
2866
3002
16
100.0000
0.1746
0.0000
0.1512
1.7814
152
2870
3022
16
99.0000
0.1667
0.0000
0.1571
1.8929
139
2850
2989
16
100.0000
0.1677
0.0000
0.1569
2.0390
144
2877
3021
16
100.0000
0.1833
0.0000
0.1500
2.2439
119
2903
3022
16
100.0000
0.1847
0.0000
0.1551
2.5681
165
2856
3021
16
99.0000
0.1688
0.0000
0.1543
3.2334
147
2890
3037
16
99.0000
0.1751
0.0000
0.1446
20.2762
145
2751
2896
16
92.0000
15.260
1.280
20.270
6DOG
47264
1
7.600
47264
1.000
97.700
1.280
1.310
1645
1
1.000
69.800
7.040
20.270
218
1
1.000
66.200
data scaling
Aimless
0.5.31
refinement
PHENIX
1.10.1_2155
data extraction
PDB_EXTRACT
3.24
data reduction
HKL-2000
phasing
PHENIX
N
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 600 s at 21 C
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
9
N
N
9
N
N
9
N
N
9
N
N
10
N
N
6
N
N
6
N
N
9
N
N
11
N
N
11
N
N
11
N
N
11
N
N
A
THR
104
A
THR
50
HELX_P
A
ARG
123
A
ARG
69
1
AA1
20
A
SER
133
A
SER
79
HELX_P
A
LYS
143
A
LYS
89
1
AA2
11
A
ASN
152
A
ASN
98
HELX_P
A
GLU
154
A
GLU
100
5
AA3
3
A
THR
155
A
THR
101
HELX_P
A
ASN
170
A
ASN
116
1
AA4
16
A
GLN
182
A
GLN
128
HELX_P
A
GLY
187
A
GLY
133
1
AA5
6
covale
1.585
both
C
C
sing
B
U
4
B
O3'
U
4
1_555
b
C
5
C
P
C
1
1_555
metalc
1.964
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
metalc
1.989
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
metalc
2.033
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
metalc
2.152
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
metalc
2.653
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
metalc
3.305
B
A
ASP
132
A
OD2
ASP
78
1_555
A
K
217
U
K
K
1_555
metalc
2.036
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
metalc
2.807
C
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
metalc
3.301
C
A
ASP
192
A
OD2
ASP
138
1_555
A
K
203
G
K
K
1_555
metalc
2.023
C
A
MG
201
E
MG
MG
1_555
A
HOH
302
X
O
HOH
1_555
metalc
2.066
A
MG
201
E
MG
MG
1_555
A
HOH
310
X
O
HOH
1_555
metalc
2.088
A
MG
201
E
MG
MG
1_555
A
HOH
323
X
O
HOH
1_555
metalc
2.017
B
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP3
C
1
1_555
metalc
2.397
B
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.259
C
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.620
C
A
MG
202
F
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
metalc
2.052
B
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.144
C
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
3.078
C
C
A
K
203
G
K
K
1_555
A
HOH
302
X
O
HOH
1_555
metalc
3.275
C
A
K
203
G
K
K
1_555
A
HOH
310
X
O
HOH
1_555
metalc
2.609
C
A
K
203
G
K
K
1_555
A
HOH
328
X
O
HOH
1_555
metalc
2.858
C
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
metalc
3.485
B
A
K
217
U
K
K
1_555
A
HOH
323
X
O
HOH
1_555
metalc
3.373
B
A
K
217
U
K
K
1_555
A
HOH
368
X
O
HOH
1_555
metalc
2.596
B
A
K
217
U
K
K
1_555
B
HOH
208
Y
O
HOH
1_555
metalc
2.550
B
B
A
K
217
U
K
K
1_555
b
C
5
C
OP2
C
1
1_555
metalc
3.487
B
A
K
217
U
K
K
1_555
b
HOH
101
Z
O
HOH
1_555
metalc
3.340
A
A
HOH
428
X
O
HOH
4_555
C
K
101
V
K
K
1_555
metalc
3.198
A
C
DT
4
D
O4
DT
4
1_555
C
K
101
V
K
K
1_555
metalc
2.586
A
C
DG
5
D
O6
DG
5
1_555
C
K
101
V
K
K
1_555
metalc
3.154
A
C
K
101
V
K
K
1_555
C
HOH
210
AA
O
HOH
1_555
hydrog
WATSON-CRICK
B
A
1
B
N1
A
1
1_555
C
DT
6
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
A
1
B
N6
A
1
1_555
C
DT
6
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
C
2
B
N3
C
2
1_555
C
DG
5
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
C
2
B
N4
C
2
1_555
C
DG
5
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
C
2
B
O2
C
2
1_555
C
DG
5
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
A
3
B
N1
A
3
1_555
C
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
A
3
B
N6
A
3
1_555
C
DT
4
D
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
U
4
B
N3
U
4
1_555
C
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
U
4
B
O4
U
4
1_555
C
DA
3
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
b
C
5
C
N3
C
1
1_555
C
DG
2
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
b
C
5
C
N4
C
1
1_555
C
DG
2
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
b
C
5
C
O2
C
1
1_555
C
DG
2
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
b
G
6
C
N1
G
2
1_555
C
DC
1
D
N3
DC
1
1_555
hydrog
WATSON-CRICK
b
G
6
C
N2
G
2
1_555
C
DC
1
D
O2
DC
1
1_555
hydrog
WATSON-CRICK
b
G
6
C
O6
G
2
1_555
C
DC
1
D
N4
DC
1
1_555
hydrolase/rna/dna
protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE, hydrolase-rna-dna complex
A
ASN
77
A
ASN
23
1
A
PRO
78
A
PRO
24
-1.20
RNH1_BACHD
UNP
1
59
Q9KEI9
AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK
WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
6DOG
PDB
2
1
6DOG
6DOG
PDB
3
1
6DOG
6DOG
PDB
4
1
6DOG
59
196
6DOG
59
196
Q9KEI9
A
1
5
142
1
4
6DOG
1
4
6DOG
B
2
1
4
5
6
6DOG
5
6
6DOG
b
3
1
2
1
6
6DOG
1
6
6DOG
C
4
1
6
1
expression tag
GLY
55
6DOG
A
Q9KEI9
UNP
1
1
expression tag
SER
56
6DOG
A
Q9KEI9
UNP
2
1
expression tag
HIS
57
6DOG
A
Q9KEI9
UNP
3
1
expression tag
MET
58
6DOG
A
Q9KEI9
UNP
4
5
anti-parallel
anti-parallel
parallel
parallel
A
VAL
93
A
VAL
39
A
GLY
103
A
GLY
49
A
GLY
79
A
GLY
25
A
ASP
87
A
ASP
33
A
LEU
68
A
LEU
14
A
GLN
75
A
GLN
21
A
ILE
129
A
ILE
75
A
SER
131
A
SER
77
A
ILE
178
A
ILE
124
A
LYS
180
A
LYS
126
binding site for residue MG A 201
A
MG
201
Software
6
binding site for residue MG A 202
A
MG
202
Software
5
binding site for residue K A 203
A
K
203
Software
8
binding site for residue IOD A 204
A
IOD
204
Software
1
binding site for residue IOD A 205
A
IOD
205
Software
1
binding site for residue IOD A 206
A
IOD
206
Software
3
binding site for residue EDO A 208
A
EDO
208
Software
4
binding site for residue EDO A 209
A
EDO
209
Software
5
binding site for residue EDO A 210
A
EDO
210
Software
4
binding site for residue EDO A 211
A
EDO
211
Software
7
binding site for residue GOL A 212
A
GOL
212
Software
5
binding site for residue GOL A 213
A
GOL
213
Software
9
binding site for residue GOL A 214
A
GOL
214
Software
6
binding site for residue GOL A 215
A
GOL
215
Software
6
binding site for residue PGE A 216
A
PGE
216
Software
10
binding site for residue K A 217
A
K
217
Software
6
binding site for residue K C 101
C
K
101
Software
3
binding site for residue GOL C 102
C
GOL
102
Software
8
A
ASP
71
A
ASP
17
6
1_555
A
ASP
192
A
ASP
138
6
1_555
A
HOH
302
X
HOH
6
1_555
A
HOH
310
X
HOH
6
1_555
A
HOH
323
X
HOH
6
1_555
b
C
5
C
C
1
6
1_555
A
ASP
71
A
ASP
17
5
1_555
A
GLU
109
A
GLU
55
5
1_555
A
ASP
132
A
ASP
78
5
1_555
B
U
4
B
U
4
5
1_555
b
C
5
C
C
1
5
1_555
A
ASP
192
A
ASP
138
8
1_555
A
GLY
194
A
GLY
140
8
1_555
A
ARG
195
A
ARG
141
8
1_555
A
LYS
196
A
LYS
142
8
1_555
A
HOH
302
X
HOH
8
1_555
A
HOH
328
X
HOH
8
1_555
b
C
5
C
C
1
8
1_555
b
G
6
C
G
2
8
1_555
A
TYR
83
A
TYR
29
1
1_555
A
PGE
216
T
PGE
1
1_555
A
ILE
64
A
ILE
10
3
1_555
A
HOH
425
X
HOH
3
2_656
A
HOH
458
X
HOH
3
1_555
A
LYS
143
A
LYS
89
4
1_555
A
THR
173
A
THR
119
4
1_555
A
TYR
174
A
TYR
120
4
1_555
A
HOH
309
X
HOH
4
1_555
A
THR
148
A
THR
94
5
1_555
A
HOH
314
X
HOH
5
1_555
C
DT
4
D
DT
4
5
1_555
C
DG
5
D
DG
5
5
1_555
C
HOH
205
AA
HOH
5
1_555
A
ILE
80
A
ILE
26
4
1_555
A
PRO
99
A
PRO
45
4
1_555
A
HOH
324
X
HOH
4
1_555
A
HOH
359
X
HOH
4
1_555
A
TRP
65
A
TRP
11
7
1_555
A
GLU
66
A
GLU
12
7
1_555
A
SER
67
A
SER
13
7
1_555
A
ASP
87
A
ASP
33
7
1_555
A
LYS
127
A
LYS
73
7
1_555
A
GOL
215
S
GOL
7
1_555
A
HOH
383
X
HOH
7
1_555
A
HIS
115
A
HIS
61
5
1_555
A
ARG
118
A
ARG
64
5
1_555
A
ASN
170
A
ASN
116
5
4_546
A
GOL
213
Q
GOL
5
1_555
A
HOH
307
X
HOH
5
1_555
A
HIS
115
A
HIS
61
9
1_555
A
TYR
119
A
TYR
65
9
1_555
A
GLU
122
A
GLU
68
9
1_555
A
ARG
123
A
ARG
69
9
1_555
A
GLU
167
A
GLU
113
9
4_546
A
ASN
170
A
ASN
116
9
4_546
A
GOL
212
P
GOL
9
1_555
A
HOH
380
X
HOH
9
4_546
A
HOH
386
X
HOH
9
1_555
A
ILE
102
A
ILE
48
6
1_555
A
VAL
150
A
VAL
96
6
1_555
A
ASN
152
A
ASN
98
6
1_555
A
GLU
154
A
GLU
100
6
1_555
A
HOH
390
X
HOH
6
1_555
C
HOH
208
AA
HOH
6
1_555
A
GLU
66
A
GLU
12
6
2_656
A
SER
125
A
SER
71
6
1_555
A
LYS
127
A
LYS
73
6
1_555
A
EDO
211
O
EDO
6
1_555
A
HOH
336
X
HOH
6
1_555
A
HOH
383
X
HOH
6
1_555
A
GLN
134
A
GLN
80
10
1_555
A
LYS
180
A
LYS
126
10
1_555
A
GLN
182
A
GLN
128
10
1_555
A
THR
183
A
THR
129
10
1_555
A
ASP
184
A
ASP
130
10
1_555
A
IOD
205
I
IOD
10
1_555
A
HOH
413
X
HOH
10
1_555
B
A
3
B
A
3
10
1_555
B
U
4
B
U
4
10
1_555
B
HOH
203
Y
HOH
10
1_555
A
ASP
132
A
ASP
78
6
1_555
A
GLU
188
A
GLU
134
6
1_555
A
HOH
316
X
HOH
6
1_555
B
U
4
B
U
4
6
1_555
B
HOH
208
Y
HOH
6
1_555
b
C
5
C
C
1
6
1_555
C
DT
4
D
DT
4
3
1_555
C
DG
5
D
DG
5
3
1_555
C
HOH
213
AA
HOH
3
1_555
A
GLY
76
A
GLY
22
8
1_555
A
ASN
77
A
ASN
23
8
1_555
A
PRO
78
A
PRO
24
8
1_555
A
HOH
306
X
HOH
8
1_555
B
HOH
210
Y
HOH
8
4_545
C
DG
2
D
DG
2
8
1_555
C
DA
3
D
DA
3
8
1_555
C
HOH
217
AA
HOH
8
1_555
5
C 1 2 1