0.012265 0.000000 0.001254 0.000000 0.026578 0.000000 0.000000 0.000000 0.016256 0.000000 0.000000 0.000000 Samara, N.L. Yang, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 95.840 90.000 81.535 37.625 61.837 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 N C N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N N Y 164 N N Y 165 N C Y 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C N 194 N N N 195 N C N 196 N O N 197 N N N 198 N C N 199 N N N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N P N 218 N O N 219 N O N 220 N O N 221 N C N 222 R C N 223 N O N 224 S C N 225 N O N 226 N C N 227 R C Y 228 N N Y 229 N C Y 230 N N Y 231 N C N 232 N C N 233 N O N 234 N N N 235 N C N 236 N N N 237 N N Y 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N O N 254 N P N 255 N O N 256 N O N 257 N O N 258 N C N 259 R C N 260 N O N 261 S C N 262 N O N 263 N C N 264 R C N 265 N N N 266 N C N 267 N O N 268 N N N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N C N 290 N O N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N O N 300 N P N 301 N O N 302 N O N 303 N O N 304 N C N 305 R C N 306 N O N 307 S C N 308 N O N 309 R C N 310 N O N 311 R C Y 312 N N Y 313 N C Y 314 N N Y 315 N C N 316 N C N 317 N O N 318 N N N 319 N C N 320 N N N 321 N N Y 322 N C N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N C N 344 N O N 345 N N N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N C N 363 N C N 364 N O N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 N C N 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N C N 387 N O N 388 N C N 389 N O N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C Y 405 N C Y 406 N N Y 407 N C Y 408 N C Y 409 N N N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N O N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 S C N 429 N C N 430 N C N 431 N C N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N I N 447 N K N 448 N N N 449 S C N 450 N C N 451 N O N 452 N C N 453 N C N 454 N C N 455 N C N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 N C N 475 N C N 476 N C N 477 N C N 478 N N N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N N N 496 S C N 497 N C N 498 N O N 499 N C N 500 N C N 501 N S N 502 N C N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N MG N 516 N C N 517 N O N 518 N C N 519 N O N 520 N C N 521 N C N 522 N O N 523 N C N 524 N C N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N N N 541 S C N 542 N C N 543 N O N 544 N C Y 545 N C Y 546 N C Y 547 N C Y 548 N C Y 549 N C Y 550 N C N 551 N O N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N N N 564 S C N 565 N C N 566 N O N 567 N C N 568 N C N 569 N C N 570 N O N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N N N 581 S C N 582 N C N 583 N O N 584 N C N 585 N O N 586 N O N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N N N 595 S C N 596 N C N 597 N O N 598 R C N 599 N O N 600 N C N 601 N O N 602 N H N 603 N H N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N N N 612 S C N 613 N C N 614 N O N 615 N C Y 616 N C Y 617 N C Y 618 N C Y 619 N N Y 620 N C Y 621 N C Y 622 N C Y 623 N C Y 624 N C N 625 N O N 626 N H N 627 N H N 628 N H N 629 N H N 630 N H N 631 N H N 632 N H N 633 N H N 634 N H N 635 N H N 636 N H N 637 N H N 638 N N N 639 S C N 640 N C N 641 N O N 642 N C Y 643 N C Y 644 N C Y 645 N C Y 646 N C Y 647 N C Y 648 N C N 649 N O N 650 N O N 651 N H N 652 N H N 653 N H N 654 N H N 655 N H N 656 N H N 657 N H N 658 N H N 659 N H N 660 N H N 661 N H N 662 N O N 663 N P N 664 N O N 665 N O N 666 N O N 667 N C N 668 R C N 669 N O N 670 S C N 671 N O N 672 R C N 673 N O N 674 R C N 675 N N N 676 N C N 677 N O N 678 N N N 679 N C N 680 N O N 681 N C N 682 N C N 683 N H N 684 N H N 685 N H N 686 N H N 687 N H N 688 N H N 689 N H N 690 N H N 691 N H N 692 N H N 693 N H N 694 N H N 695 N H N 696 N N N 697 S C N 698 N C N 699 N O N 700 N C N 701 N C N 702 N C N 703 N O N 704 N H N 705 N H N 706 N H N 707 N H N 708 N H N 709 N H N 710 N H N 711 N H N 712 N H N 713 N H N 714 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N sing Y 172 N sing Y 173 N sing Y 174 N doub N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub N 181 N sing Y 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing Y 241 N sing Y 242 N sing Y 243 N doub N 244 N sing Y 245 N sing N 246 N sing Y 247 N doub N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing Y 327 N sing Y 328 N sing Y 329 N doub N 330 N sing Y 331 N sing N 332 N sing Y 333 N doub N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing Y 413 N sing Y 414 N doub Y 415 N doub N 416 N sing Y 417 N sing N 418 N sing Y 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N doub N 540 N sing N 541 N sing N 542 N sing N 543 N sing Y 544 N doub Y 545 N sing Y 546 N sing N 547 N sing Y 548 N doub N 549 N sing Y 550 N doub N 551 N sing Y 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N doub N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N doub N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N doub N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N doub N 609 N sing N 610 N sing N 611 N sing N 612 N sing Y 613 N doub Y 614 N sing Y 615 N sing N 616 N sing Y 617 N doub Y 618 N sing Y 619 N sing N 620 N sing Y 621 N sing Y 622 N doub N 623 N sing Y 624 N doub N 625 N sing Y 626 N sing N 627 N sing N 628 N sing N 629 N sing N 630 N sing N 631 N sing N 632 N sing N 633 N sing N 634 N sing N 635 N sing N 636 N doub N 637 N sing N 638 N sing N 639 N sing N 640 N sing Y 641 N doub Y 642 N sing Y 643 N sing N 644 N sing Y 645 N doub N 646 N sing Y 647 N doub N 648 N sing Y 649 N sing N 650 N sing N 651 N sing N 652 N sing N 653 N sing N 654 N sing N 655 N sing N 656 N doub N 657 N sing N 658 N sing N 659 N sing N 660 N sing N 661 N sing N 662 N sing N 663 N sing N 664 N sing N 665 N sing N 666 N sing N 667 N sing N 668 N sing N 669 N sing N 670 N sing N 671 N sing N 672 N sing N 673 N sing N 674 N sing N 675 N sing N 676 N sing N 677 N sing N 678 N sing N 679 N sing N 680 N doub N 681 N sing N 682 N sing N 683 N sing N 684 N doub N 685 N sing N 686 N doub N 687 N sing N 688 N sing N 689 N sing N 690 N sing N 691 N sing N 692 N sing N 693 N sing N 694 N sing N 695 N doub N 696 N sing N 697 N sing N 698 N sing N 699 N sing N 700 N sing N 701 N sing N 702 N sing N 703 N sing N 704 N sing N 705 N sing N 706 N sing US Nat. Struct. Mol. Biol. 1545-9985 25 715 721 10.1038/s41594-018-0099-4 30076410 Cation trafficking propels RNA hydrolysis. 2018 0000-0002-3591-2195 10.2210/pdb6dop/pdb pdb_00006dop 100 1 CCD 2016-02-15 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 1 1.0 22-BM APS 1 SYNCHROTRON APS BEAMLINE 22-BM 16330.462 Ribonuclease H 3.1.26.4 Catalytic Domain 1 man polymer 1224.802 RNA (5'-R(*AP*CP*AP*U)-3') 1 syn polymer 605.430 RNA (5'-R(P*CP*G)-3') 1 syn polymer 1824.228 DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') 1 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 39.098 POTASSIUM ION 2 syn non-polymer 126.904 IODIDE ION 4 syn non-polymer 92.094 GLYCEROL 6 syn non-polymer 150.173 TRIETHYLENE GLYCOL 1 syn non-polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 174 nat water RNase H no no GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK A polypeptide(L) no no ACAU ACAU B polyribonucleotide no no CG CG b polyribonucleotide no no (DC)(DG)(DA)(DT)(DG)(DT) CGATGT C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125 sample 1 142 rnhA, BH0863 272558 Bacillus halodurans 562 Escherichia coli BL21(DE3) plasmid Biological sequence pET15b 1 2.45 49.72 0.000 VAPOR DIFFUSION, HANGING DROP 14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2 294 -1.388 1 20 B 1 C 6 1.159 B_A1:DT6_C 1 -6.423 0.200 -0.089 -0.138 2.962 1 19 B 2 C 5 2.519 B_C2:DG5_C 2 -13.863 0.217 0.173 -0.180 -7.322 1 20 B 3 C 4 1.304 B_A3:DT4_C 3 -11.725 0.126 -0.265 -0.159 -4.152 1 20 B 4 C 3 -0.072 B_U4:DA3_C 4 -8.703 -0.030 -0.115 -0.147 -9.083 1 19 b 5 C 2 2.079 b_C5:DG2_C 5 -6.229 0.089 0.163 -0.178 -3.158 1 19 b 6 C 1 -0.314 b_G6:DC1_C 6 -7.967 -0.270 -0.013 -0.166 3.038 35.593 B B 1 2 7.279 C C 6 5 3.244 4.435 0.751 -1.034 BB_A1C2:DG5DT6_CC 1 -2.452 4.024 35.242 -2.314 -1.572 2.516 29.800 B B 2 3 24.469 C C 5 4 3.477 12.193 -0.560 -1.416 BB_C2A3:DT4DG5_CC 2 3.786 -7.597 26.982 -5.208 1.851 3.262 24.570 B B 3 4 3.666 C C 4 3 3.309 1.555 0.969 -2.165 BB_A3U4:DA3DT4_CC 3 3.108 -7.326 24.327 -5.572 -1.311 3.096 33.668 B b 4 5 7.409 C C 3 2 3.354 4.280 0.169 -1.896 Bb_U4C5:DG2DA3_CC 4 0.440 -0.762 33.400 -3.965 -0.222 2.679 23.068 b b 5 6 16.551 C C 2 1 3.221 6.441 0.994 -2.032 bb_C5G6:DC1DG2_CC 5 6.506 -16.717 21.196 -7.202 -0.344 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2018-08-15 1 1 2023-10-11 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_value_order _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id N RCSB Y RCSB 2018-06-09 REL REL The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal. Cleavage of RNA by B. Halodurans Ribonuclease H1 undefined 1 A O HOH 439 6.30 1 A O HOH 440 7.47 K K SUBJECT OF INVESTIGATION MG MG SUBJECT OF INVESTIGATION MG MAGNESIUM ION K POTASSIUM ION IOD IODIDE ION GOL GLYCEROL PGE TRIETHYLENE GLYCOL EDO 1,2-ETHANEDIOL HOH water 32630 synthetic construct sample 1 4 32630 synthetic construct sample 1 2 32630 synthetic construct sample 1 6 1ZBL pdbid 1ZBL PDB experimental model MG 202 5 MG MG 201 A K 211 6 K K 202 A IOD 1 7 IOD IOD 203 A IOD 2 7 IOD IOD 204 A IOD 3 7 IOD IOD 205 A IOD 4 7 IOD IOD 206 A GOL 2 8 GOL GOL 207 A GOL 3 8 GOL GOL 208 A GOL 4 8 GOL GOL 209 A GOL 6 8 GOL GOL 210 A GOL 7 8 GOL GOL 211 A PGE 8 9 PGE PGE 212 A GOL 1 8 GOL GOL 213 A MG 201 5 MG MG 214 A K 213 6 K K 101 C EDO 1 10 EDO EDO 102 C HOH 112 11 HOH HOH 301 A HOH 26 11 HOH HOH 302 A HOH 93 11 HOH HOH 303 A HOH 88 11 HOH HOH 304 A HOH 113 11 HOH HOH 305 A HOH 142 11 HOH HOH 306 A HOH 49 11 HOH HOH 307 A HOH 117 11 HOH HOH 308 A HOH 106 11 HOH HOH 309 A HOH 36 11 HOH HOH 310 A HOH 122 11 HOH HOH 311 A HOH 59 11 HOH HOH 312 A HOH 64 11 HOH HOH 313 A HOH 84 11 HOH HOH 314 A HOH 180 11 HOH HOH 315 A HOH 137 11 HOH HOH 316 A HOH 134 11 HOH HOH 317 A HOH 151 11 HOH HOH 318 A HOH 119 11 HOH HOH 319 A HOH 167 11 HOH HOH 320 A HOH 145 11 HOH HOH 321 A HOH 45 11 HOH HOH 322 A HOH 172 11 HOH HOH 323 A HOH 46 11 HOH HOH 324 A HOH 177 11 HOH HOH 325 A HOH 96 11 HOH HOH 326 A HOH 27 11 HOH HOH 327 A HOH 53 11 HOH HOH 328 A HOH 16 11 HOH HOH 329 A HOH 166 11 HOH HOH 330 A HOH 24 11 HOH HOH 331 A HOH 23 11 HOH HOH 332 A HOH 55 11 HOH HOH 333 A HOH 6 11 HOH HOH 334 A HOH 101 11 HOH HOH 335 A HOH 123 11 HOH HOH 336 A HOH 115 11 HOH HOH 337 A HOH 29 11 HOH HOH 338 A HOH 164 11 HOH HOH 339 A HOH 8 11 HOH HOH 340 A HOH 140 11 HOH HOH 341 A HOH 13 11 HOH HOH 342 A HOH 69 11 HOH HOH 343 A HOH 1 11 HOH HOH 344 A HOH 141 11 HOH HOH 345 A HOH 78 11 HOH HOH 346 A HOH 65 11 HOH HOH 347 A HOH 109 11 HOH HOH 348 A HOH 52 11 HOH HOH 349 A HOH 63 11 HOH HOH 350 A HOH 121 11 HOH HOH 351 A HOH 155 11 HOH HOH 352 A HOH 56 11 HOH HOH 353 A HOH 67 11 HOH HOH 354 A HOH 30 11 HOH HOH 355 A HOH 114 11 HOH HOH 356 A HOH 77 11 HOH HOH 357 A HOH 28 11 HOH HOH 358 A HOH 111 11 HOH HOH 359 A HOH 107 11 HOH HOH 360 A HOH 10 11 HOH HOH 361 A HOH 50 11 HOH HOH 362 A HOH 47 11 HOH HOH 363 A HOH 86 11 HOH HOH 364 A HOH 43 11 HOH HOH 365 A HOH 75 11 HOH HOH 366 A HOH 102 11 HOH HOH 367 A HOH 120 11 HOH HOH 368 A HOH 146 11 HOH HOH 369 A HOH 127 11 HOH HOH 370 A HOH 14 11 HOH HOH 371 A HOH 175 11 HOH HOH 372 A HOH 105 11 HOH HOH 373 A HOH 183 11 HOH HOH 374 A HOH 138 11 HOH HOH 375 A HOH 3 11 HOH HOH 376 A HOH 94 11 HOH HOH 377 A HOH 174 11 HOH HOH 378 A HOH 156 11 HOH HOH 379 A HOH 99 11 HOH HOH 380 A HOH 25 11 HOH HOH 381 A HOH 95 11 HOH HOH 382 A HOH 170 11 HOH HOH 383 A HOH 42 11 HOH HOH 384 A HOH 2 11 HOH HOH 385 A HOH 20 11 HOH HOH 386 A HOH 158 11 HOH HOH 387 A HOH 132 11 HOH HOH 388 A HOH 97 11 HOH HOH 389 A HOH 54 11 HOH HOH 390 A HOH 51 11 HOH HOH 391 A HOH 61 11 HOH HOH 392 A HOH 150 11 HOH HOH 393 A HOH 124 11 HOH HOH 394 A HOH 5 11 HOH HOH 395 A HOH 159 11 HOH HOH 396 A HOH 154 11 HOH HOH 397 A HOH 168 11 HOH HOH 398 A HOH 60 11 HOH HOH 399 A HOH 171 11 HOH HOH 400 A HOH 100 11 HOH HOH 401 A HOH 108 11 HOH HOH 402 A HOH 58 11 HOH HOH 403 A HOH 74 11 HOH HOH 404 A HOH 157 11 HOH HOH 405 A HOH 7 11 HOH HOH 406 A HOH 81 11 HOH HOH 407 A HOH 131 11 HOH HOH 408 A HOH 179 11 HOH HOH 409 A HOH 79 11 HOH HOH 410 A HOH 169 11 HOH HOH 411 A HOH 147 11 HOH HOH 412 A HOH 70 11 HOH HOH 413 A HOH 176 11 HOH HOH 414 A HOH 144 11 HOH HOH 415 A HOH 62 11 HOH HOH 416 A HOH 92 11 HOH HOH 417 A HOH 11 11 HOH HOH 418 A HOH 181 11 HOH HOH 419 A HOH 82 11 HOH HOH 420 A HOH 178 11 HOH HOH 421 A HOH 18 11 HOH HOH 422 A HOH 19 11 HOH HOH 423 A HOH 80 11 HOH HOH 424 A HOH 143 11 HOH HOH 425 A HOH 133 11 HOH HOH 426 A HOH 165 11 HOH HOH 427 A HOH 116 11 HOH HOH 428 A HOH 66 11 HOH HOH 429 A HOH 125 11 HOH HOH 430 A HOH 91 11 HOH HOH 431 A HOH 41 11 HOH HOH 432 A HOH 32 11 HOH HOH 433 A HOH 89 11 HOH HOH 434 A HOH 68 11 HOH HOH 435 A HOH 73 11 HOH HOH 436 A HOH 37 11 HOH HOH 437 A HOH 85 11 HOH HOH 438 A HOH 90 11 HOH HOH 439 A HOH 44 11 HOH HOH 440 A HOH 87 11 HOH HOH 301 B HOH 72 11 HOH HOH 302 B HOH 35 11 HOH HOH 303 B HOH 9 11 HOH HOH 304 B HOH 17 11 HOH HOH 305 B HOH 71 11 HOH HOH 306 B HOH 173 11 HOH HOH 307 B HOH 153 11 HOH HOH 308 B HOH 98 11 HOH HOH 309 B HOH 136 11 HOH HOH 310 B HOH 104 11 HOH HOH 101 b HOH 118 11 HOH HOH 102 b HOH 152 11 HOH HOH 103 b HOH 135 11 HOH HOH 104 b HOH 103 11 HOH HOH 105 b HOH 130 11 HOH HOH 106 b HOH 185 11 HOH HOH 201 C HOH 186 11 HOH HOH 202 C HOH 148 11 HOH HOH 203 C HOH 31 11 HOH HOH 204 C HOH 57 11 HOH HOH 205 C HOH 12 11 HOH HOH 206 C HOH 76 11 HOH HOH 207 C HOH 4 11 HOH HOH 208 C HOH 21 11 HOH HOH 209 C HOH 34 11 HOH HOH 210 C HOH 184 11 HOH HOH 211 C HOH 149 11 HOH HOH 212 C HOH 48 11 HOH HOH 213 C HOH 128 11 HOH HOH 214 C HOH 162 11 HOH HOH 215 C HOH 163 11 HOH HOH 216 C HOH 161 11 HOH HOH 217 C HOH 40 11 HOH HOH 218 C n 1 55 A n 2 56 A n 3 57 A n 4 58 A n 5 59 A n 6 60 A GLU 61 n 7 GLU 61 A GLU 62 n 8 GLU 62 A ILE 63 n 9 ILE 63 A ILE 64 n 10 ILE 64 A TRP 65 n 11 TRP 65 A GLU 66 n 12 GLU 66 A SER 67 n 13 SER 67 A LEU 68 n 14 LEU 68 A SER 69 n 15 SER 69 A VAL 70 n 16 VAL 70 A ASP 71 n 17 ASP 71 A VAL 72 n 18 VAL 72 A GLY 73 n 19 GLY 73 A SER 74 n 20 SER 74 A GLN 75 n 21 GLN 75 A GLY 76 n 22 GLY 76 A ASN 77 n 23 ASN 77 A PRO 78 n 24 PRO 78 A GLY 79 n 25 GLY 79 A ILE 80 n 26 ILE 80 A VAL 81 n 27 VAL 81 A GLU 82 n 28 GLU 82 A TYR 83 n 29 TYR 83 A LYS 84 n 30 LYS 84 A GLY 85 n 31 GLY 85 A VAL 86 n 32 VAL 86 A ASP 87 n 33 ASP 87 A THR 88 n 34 THR 88 A LYS 89 n 35 LYS 89 A THR 90 n 36 THR 90 A GLY 91 n 37 GLY 91 A GLU 92 n 38 GLU 92 A VAL 93 n 39 VAL 93 A LEU 94 n 40 LEU 94 A PHE 95 n 41 PHE 95 A GLU 96 n 42 GLU 96 A ARG 97 n 43 ARG 97 A GLU 98 n 44 GLU 98 A PRO 99 n 45 PRO 99 A ILE 100 n 46 ILE 100 A PRO 101 n 47 PRO 101 A ILE 102 n 48 ILE 102 A GLY 103 n 49 GLY 103 A THR 104 n 50 THR 104 A ASN 105 n 51 ASN 105 A ASN 106 n 52 ASN 106 A MET 107 n 53 MET 107 A GLY 108 n 54 GLY 108 A GLU 109 n 55 GLU 109 A PHE 110 n 56 PHE 110 A LEU 111 n 57 LEU 111 A ALA 112 n 58 ALA 112 A ILE 113 n 59 ILE 113 A VAL 114 n 60 VAL 114 A HIS 115 n 61 HIS 115 A GLY 116 n 62 GLY 116 A LEU 117 n 63 LEU 117 A ARG 118 n 64 ARG 118 A TYR 119 n 65 TYR 119 A LEU 120 n 66 LEU 120 A LYS 121 n 67 LYS 121 A GLU 122 n 68 GLU 122 A ARG 123 n 69 ARG 123 A ASN 124 n 70 ASN 124 A SER 125 n 71 SER 125 A ARG 126 n 72 ARG 126 A LYS 127 n 73 LYS 127 A PRO 128 n 74 PRO 128 A ILE 129 n 75 ILE 129 A TYR 130 n 76 TYR 130 A SER 131 n 77 SER 131 A ASP 132 n 78 ASP 132 A SER 133 n 79 SER 133 A GLN 134 n 80 GLN 134 A THR 135 n 81 THR 135 A ALA 136 n 82 ALA 136 A ILE 137 n 83 ILE 137 A LYS 138 n 84 LYS 138 A TRP 139 n 85 TRP 139 A VAL 140 n 86 VAL 140 A LYS 141 n 87 LYS 141 A ASP 142 n 88 ASP 142 A LYS 143 n 89 LYS 143 A LYS 144 n 90 LYS 144 A ALA 145 n 91 ALA 145 A LYS 146 n 92 LYS 146 A SER 147 n 93 SER 147 A THR 148 n 94 THR 148 A LEU 149 n 95 LEU 149 A VAL 150 n 96 VAL 150 A ARG 151 n 97 ARG 151 A ASN 152 n 98 ASN 152 A GLU 153 n 99 GLU 153 A GLU 154 n 100 GLU 154 A THR 155 n 101 THR 155 A ALA 156 n 102 ALA 156 A LEU 157 n 103 LEU 157 A ILE 158 n 104 ILE 158 A TRP 159 n 105 TRP 159 A LYS 160 n 106 LYS 160 A LEU 161 n 107 LEU 161 A VAL 162 n 108 VAL 162 A ASP 163 n 109 ASP 163 A GLU 164 n 110 GLU 164 A ALA 165 n 111 ALA 165 A GLU 166 n 112 GLU 166 A GLU 167 n 113 GLU 167 A TRP 168 n 114 TRP 168 A LEU 169 n 115 LEU 169 A ASN 170 n 116 ASN 170 A THR 171 n 117 THR 171 A HIS 172 n 118 HIS 172 A THR 173 n 119 THR 173 A TYR 174 n 120 TYR 174 A GLU 175 n 121 GLU 175 A THR 176 n 122 THR 176 A PRO 177 n 123 PRO 177 A ILE 178 n 124 ILE 178 A LEU 179 n 125 LEU 179 A LYS 180 n 126 LYS 180 A TRP 181 n 127 TRP 181 A GLN 182 n 128 GLN 182 A THR 183 n 129 THR 183 A ASP 184 n 130 ASP 184 A LYS 185 n 131 LYS 185 A TRP 186 n 132 TRP 186 A GLY 187 n 133 GLY 187 A GLU 188 n 134 GLU 188 A ILE 189 n 135 ILE 189 A LYS 190 n 136 LYS 190 A ALA 191 n 137 ALA 191 A ASP 192 n 138 ASP 192 A TYR 193 n 139 TYR 193 A GLY 194 n 140 GLY 194 A ARG 195 n 141 ARG 195 A n 142 196 A A 1 n 1 A 1 B C 2 n 2 C 2 B A 3 n 3 A 3 B U 4 n 4 U 4 B C 5 n 1 C 5 b G 6 n 2 G 6 b DC 1 n 1 DC 1 C DG 2 n 2 DG 2 C DA 3 n 3 DA 3 C DT 4 n 4 DT 4 C DG 5 n 5 DG 5 C DT 6 n 6 DT 6 C 5.0599 0.5088 1.3394 3.5613 1.4953 3.7403 0.1651 0.6920 0.1914 -0.3116 -0.3608 -0.8629 0.1184 1.2651 0.0579 0.2227 0.1189 0.0827 0.4673 0.0379 0.3175 refined 40.749 -4.287 18.697 X-RAY DIFFRACTION 8.1912 -1.8710 5.5038 1.5440 -1.0094 5.8333 0.2189 0.3241 -0.3223 -0.2138 -0.1078 0.0585 0.1987 0.0087 -0.0746 0.1813 0.0017 0.0134 0.1788 -0.0086 0.0940 refined 20.134 -6.209 16.595 X-RAY DIFFRACTION 5.1300 0.3784 -5.1765 7.6430 0.8527 7.7473 -0.1605 -0.3624 -0.9477 0.0228 0.0914 -0.5502 0.7557 0.5451 0.1605 0.2087 0.0872 0.0277 0.1983 0.0234 0.2235 refined 28.526 -11.537 23.873 X-RAY DIFFRACTION 2.9516 -0.0102 1.1678 0.7846 0.3821 2.8097 0.0650 -0.1616 -0.0868 -0.0405 -0.0697 -0.0107 0.0212 -0.1738 0.0134 0.1438 0.0144 0.0334 0.1680 0.0103 0.0878 refined 21.933 -1.235 23.275 X-RAY DIFFRACTION 5.6952 -2.4676 -0.5239 4.1336 1.9815 1.7347 0.3138 0.2866 0.4235 -0.2503 -0.1301 -0.3205 -0.7334 -0.0440 -0.1320 0.3036 0.0043 0.0699 0.1846 0.0329 0.1292 refined 24.035 9.375 16.517 X-RAY DIFFRACTION 6.0100 1.2436 0.2256 2.2884 1.1462 4.4551 0.3449 0.1276 0.3413 -0.2205 -0.5502 0.3731 -0.7289 -0.9546 0.0331 0.3256 0.2882 -0.0064 0.4577 -0.0804 0.1687 refined 8.655 7.277 16.114 X-RAY DIFFRACTION 5.4493 1.5153 5.0118 2.2841 3.3214 8.3134 0.1553 -0.2348 -0.0687 -0.1034 -0.2870 0.1205 -0.2543 -0.7186 0.1372 0.1742 0.0669 0.0270 0.2787 -0.0273 0.1129 refined 12.559 5.544 24.824 X-RAY DIFFRACTION 4.4699 -4.6905 -5.7772 6.0732 5.3296 7.9466 0.1813 -0.5040 0.3653 -0.0960 0.1454 -0.2423 -0.4432 0.3365 -0.2324 0.1881 -0.0181 0.0242 0.2014 -0.0041 0.1228 refined 26.628 8.444 30.207 X-RAY DIFFRACTION 0.5728 -1.1487 -0.6008 3.4855 3.8091 6.3997 0.1469 0.3553 -0.0479 -0.5254 -0.1566 -0.4780 -0.0872 0.6229 -0.0967 0.2734 0.0499 0.1158 0.3709 0.0348 0.1687 refined 34.903 -0.649 12.251 X-RAY DIFFRACTION 1.8387 0.5206 -2.3479 4.6917 -2.3517 3.6098 0.0254 0.8468 -0.3576 -0.6125 -0.0288 0.2727 0.8412 -0.3032 0.1641 0.4073 0.0332 0.0318 0.3792 -0.0941 0.1806 refined 25.979 -9.054 12.180 X-RAY DIFFRACTION 2.8789 -0.2213 1.9652 4.9311 -0.9840 3.8890 0.0430 0.3503 -0.1834 -0.4664 -0.1997 -0.1415 0.1864 0.1142 0.2011 0.3317 0.0873 0.0548 0.3238 0.0118 0.1185 refined 23.893 0.609 5.262 X-RAY DIFFRACTION 2.3740 -1.3302 -2.6180 2.0328 -0.2403 5.0591 0.0068 0.3837 -0.1189 -0.8479 -0.3280 0.1534 -0.3669 -0.2355 0.2903 0.4110 0.0868 -0.0058 0.3219 -0.0033 0.1290 refined 16.440 3.586 3.158 X-RAY DIFFRACTION A 61 A 66 X-RAY DIFFRACTION 1 ( CHAIN A AND RESID 61:66 ) A 67 A 87 X-RAY DIFFRACTION 2 ( CHAIN A AND RESID 67:87 ) A 88 A 96 X-RAY DIFFRACTION 3 ( CHAIN A AND RESID 88:96 ) A 97 A 133 X-RAY DIFFRACTION 4 ( CHAIN A AND RESID 97:133 ) A 134 A 142 X-RAY DIFFRACTION 5 ( CHAIN A AND RESID 134:142 ) A 143 A 155 X-RAY DIFFRACTION 6 ( CHAIN A AND RESID 143:155 ) A 156 A 169 X-RAY DIFFRACTION 7 ( CHAIN A AND RESID 156:169 ) A 170 A 177 X-RAY DIFFRACTION 8 ( CHAIN A AND RESID 170:177 ) A 178 A 186 X-RAY DIFFRACTION 9 ( CHAIN A AND RESID 178:186 ) A 187 A 195 X-RAY DIFFRACTION 10 ( CHAIN A AND RESID 187:195 ) B 1 B 4 X-RAY DIFFRACTION 11 ( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 ) b 5 b 6 X-RAY DIFFRACTION 11 ( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 ) C 1 C 6 X-RAY DIFFRACTION 12 ( CHAIN C AND RESID 1:6 ) author_and_software_defined_assembly PISA 4 tetrameric none 6160 -36 7580 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 A GLU 109 A OE1 GLU 55 1_555 100.2 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 A ASP 132 A OD1 ASP 78 1_555 128.6 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 A ASP 132 A OD1 ASP 78 1_555 95.7 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 B U 4 A B O3' U 4 1_555 143.1 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 B U 4 A B O3' U 4 1_555 87.3 A ASP 132 A OD1 ASP 78 1_555 A MG 201 E MG MG 1_555 B U 4 A B O3' U 4 1_555 85.8 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 B U 4 C B O3' U 4 1_555 144.5 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 B U 4 C B O3' U 4 1_555 85.8 A ASP 132 A OD1 ASP 78 1_555 A MG 201 E MG MG 1_555 B U 4 C B O3' U 4 1_555 84.9 B U 4 A B O3' U 4 1_555 A MG 201 E MG MG 1_555 B U 4 C B O3' U 4 1_555 1.8 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 b C 5 A C OP1 C 1 1_555 89.4 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 b C 5 A C OP1 C 1 1_555 114.5 A ASP 132 A OD1 ASP 78 1_555 A MG 201 E MG MG 1_555 b C 5 A C OP1 C 1 1_555 127.0 B U 4 A B O3' U 4 1_555 A MG 201 E MG MG 1_555 b C 5 A C OP1 C 1 1_555 55.3 B U 4 C B O3' U 4 1_555 A MG 201 E MG MG 1_555 b C 5 A C OP1 C 1 1_555 57.0 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 91.2 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 109.4 A ASP 132 A OD1 ASP 78 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 128.5 B U 4 A B O3' U 4 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 52.7 B U 4 C B O3' U 4 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 54.3 b C 5 A C OP1 C 1 1_555 A MG 201 E MG MG 1_555 b C 5 B C OP1 C 1 1_555 5.2 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 88.1 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 112.6 A ASP 132 A OD1 ASP 78 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 129.3 B U 4 A B O3' U 4 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 56.1 B U 4 C B O3' U 4 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 57.8 b C 5 A C OP1 C 1 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 2.5 b C 5 B C OP1 C 1 1_555 A MG 201 E MG MG 1_555 b C 5 C C OP1 C 1 1_555 4.1 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 A ASP 192 A OD1 ASP 138 1_555 99.0 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 A HOH 304 C U O HOH 1_555 171.5 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 A HOH 304 C U O HOH 1_555 72.9 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 A HOH 310 U O HOH 1_555 89.5 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 A HOH 310 U O HOH 1_555 98.3 A HOH 304 C U O HOH 1_555 A MG 214 R MG MG 1_555 A HOH 310 U O HOH 1_555 89.1 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 A HOH 313 U O HOH 1_555 87.5 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 A HOH 313 U O HOH 1_555 96.2 A HOH 304 C U O HOH 1_555 A MG 214 R MG MG 1_555 A HOH 313 U O HOH 1_555 95.9 A HOH 310 U O HOH 1_555 A MG 214 R MG MG 1_555 A HOH 313 U O HOH 1_555 165.5 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP3 C 1 1_555 155.6 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP3 C 1 1_555 103.3 A HOH 304 C U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP3 C 1 1_555 31.2 A HOH 310 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP3 C 1 1_555 77.7 A HOH 313 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP3 C 1 1_555 99.7 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 b C 5 A C OP1 C 1 1_555 106.1 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 b C 5 A C OP1 C 1 1_555 154.2 A HOH 304 C U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 A C OP1 C 1 1_555 82.3 A HOH 310 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 A C OP1 C 1 1_555 88.1 A HOH 313 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 A C OP1 C 1 1_555 79.1 b C 5 B C OP3 C 1 1_555 A MG 214 R MG MG 1_555 b C 5 A C OP1 C 1 1_555 53.5 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 95.9 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 163.4 A HOH 304 C U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 92.4 A HOH 310 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 89.1 A HOH 313 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 77.2 b C 5 B C OP3 C 1 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 63.6 b C 5 A C OP1 C 1 1_555 A MG 214 R MG MG 1_555 b C 5 B C OP1 C 1 1_555 10.2 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 95.0 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 163.9 A HOH 304 C U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 93.3 A HOH 310 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 89.5 A HOH 313 U O HOH 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 76.7 b C 5 B C OP3 C 1 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 64.6 b C 5 A C OP1 C 1 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 11.1 b C 5 B C OP1 C 1 1_555 A MG 214 R MG MG 1_555 b C 5 C C OP1 C 1 1_555 1.0 A ASP 192 A OD1 ASP 138 1_555 A K 202 C F K K 1_555 A HOH 304 C U O HOH 1_555 50.9 A ASP 192 A OD1 ASP 138 1_555 A K 202 C F K K 1_555 A HOH 308 U O HOH 1_555 66.0 A HOH 304 C U O HOH 1_555 A K 202 C F K K 1_555 A HOH 308 U O HOH 1_555 63.5 A ASP 192 A OD1 ASP 138 1_555 A K 202 C F K K 1_555 A HOH 310 U O HOH 1_555 62.3 A HOH 304 C U O HOH 1_555 A K 202 C F K K 1_555 A HOH 310 U O HOH 1_555 60.8 A HOH 308 U O HOH 1_555 A K 202 C F K K 1_555 A HOH 310 U O HOH 1_555 119.8 A ASP 192 A OD1 ASP 138 1_555 A K 202 C F K K 1_555 b G 6 C OP2 G 2 1_555 109.2 A HOH 304 C U O HOH 1_555 A K 202 C F K K 1_555 b G 6 C OP2 G 2 1_555 71.8 A HOH 308 U O HOH 1_555 A K 202 C F K K 1_555 b G 6 C OP2 G 2 1_555 123.9 A HOH 310 U O HOH 1_555 A K 202 C F K K 1_555 b G 6 C OP2 G 2 1_555 54.5 b HOH 106 W O HOH 4_555 C K 101 A S K K 1_555 C DT 4 D O4 DT 4 1_555 160.4 b HOH 106 W O HOH 4_555 C K 101 A S K K 1_555 C DG 5 D O6 DG 5 1_555 86.0 C DT 4 D O4 DT 4 1_555 C K 101 A S K K 1_555 C DG 5 D O6 DG 5 1_555 76.5 b HOH 106 W O HOH 4_555 C K 101 A S K K 1_555 C HOH 208 X O HOH 1_555 96.8 C DT 4 D O4 DT 4 1_555 C K 101 A S K K 1_555 C HOH 208 X O HOH 1_555 88.4 C DG 5 D O6 DG 5 1_555 C K 101 A S K K 1_555 C HOH 208 X O HOH 1_555 78.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 100 A O ILE 46 A N VAL 81 A N VAL 27 A O VAL 86 A O VAL 32 A N SER 69 A N SER 15 A N LEU 68 A N LEU 14 A O TYR 130 A O TYR 76 A N ILE 129 A N ILE 75 A O LEU 179 A O LEU 125 1 B O2' A 1 B O2' A 1 1 Y 1 b O2' G 6 C O2' G 2 1 Y 1 A GLY 55 A GLY 1 1 Y 1 A SER 56 A SER 2 1 Y 1 A HIS 57 A HIS 3 1 Y 1 A MET 58 A MET 4 1 Y 1 A ALA 59 A ALA 5 1 Y 1 A LYS 60 A LYS 6 1 Y 1 A LYS 196 A LYS 142 1 Y 1 A A OE1 HH12 GLU ARG 82 195 1.48 1 C C O1 O EDO HOH 102 201 2.02 1 A A OH O TYR HOH 174 301 2.10 B 1 A A OE1 NH1 GLU ARG 82 195 2.16 1 A A OE2 O GLU HOH 62 302 2.17 1 13.71 1.20 110.70 124.41 B B B O5' P OP1 U U U 4 4 4 B N 1 -9.62 0.90 105.70 96.08 B B B O5' P OP2 U U U 4 4 4 B N 1 2.01 0.30 108.30 110.31 C C C O4' C1' N9 DG DG DG 5 5 5 N 1 b b P OP3 C C 5 5 -0.128 0.012 1.607 1.479 B B N 1 C C O3' C3' DG DG 2 2 -0.041 0.006 1.419 1.378 N 1 A A O O HOH HOH 402 402 1.81 1_555 2_656 1 A LYS 146 -93.67 58.58 100.170 28.4289 11.670 Structures refined in Phenix and nucleic acid and protein residues built in Coot 0.1784 0.1616 0.1625 1.25 19.8690 2469 48952 5.0400 94.1500 0.1400 1 THROUGHOUT 1.340 19.7700 0.9000 1.1100 pdbid 1ZBL 1.25 19.8690 174 1576 57.86 41.01 58 244 1100 147 0.007 1516 1.148 2085 0.074 231 0.007 212 23.699 608 0.3454 0.0000 0.2926 1.2726 82 1579 1661 18 59.0000 0.3200 0.0000 0.2966 1.2985 122 2478 2600 18 90.0000 0.2899 0.0000 0.2603 1.3268 142 2554 2696 18 94.0000 0.2480 0.0000 0.2527 1.3576 127 2625 2752 18 95.0000 0.2328 0.0000 0.2340 1.3916 148 2616 2764 18 96.0000 0.2287 0.0000 0.2163 1.4292 131 2610 2741 18 96.0000 0.2181 0.0000 0.1996 1.4712 142 2610 2752 18 96.0000 0.2134 0.0000 0.1964 1.5187 141 2633 2774 18 96.0000 0.2220 0.0000 0.1799 1.5729 146 2644 2790 18 97.0000 0.1872 0.0000 0.1651 1.6359 159 2633 2792 18 97.0000 0.1813 0.0000 0.1612 1.7103 141 2682 2823 18 97.0000 0.1707 0.0000 0.1565 1.8004 147 2669 2816 18 98.0000 0.1962 0.0000 0.1690 1.9131 137 2656 2793 18 98.0000 0.1646 0.0000 0.1583 2.0607 141 2725 2866 18 98.0000 0.1592 0.0000 0.1504 2.2678 153 2714 2867 18 99.0000 0.1896 0.0000 0.1510 2.5954 131 2739 2870 18 99.0000 0.1637 0.0000 0.1514 3.2675 139 2764 2903 18 99.0000 0.1538 0.0000 0.1393 19.8713 140 2552 2692 18 90.0000 16.040 1.250 19.870 6DOP 48969 1 5.600 48969 1.000 94.500 1.250 1.270 1396 1 1.000 55.800 6.840 19.870 218 1 1.000 64.800 data scaling Aimless 0.5.31 refinement PHENIX 1.10_2155 data extraction PDB_EXTRACT 3.24 data reduction HKL-2000 phasing PHENIX N Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C (dataset 1) 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 7 N N 7 N N 8 N N 8 N N 8 N N 8 N N 8 N N 9 N N 8 N N 5 N N 6 N N 10 N N 11 N N 11 N N 11 N N 11 N N A THR 104 A THR 50 HELX_P A ARG 123 A ARG 69 1 AA1 20 A SER 133 A SER 79 HELX_P A LYS 143 A LYS 89 1 AA2 11 A THR 155 A THR 101 HELX_P A ASN 170 A ASN 116 1 AA3 16 A GLN 182 A GLN 128 HELX_P A GLY 187 A GLY 133 1 AA4 6 covale 1.513 both A C sing B U 4 B O3' U 4 1_555 b C 5 C P C 1 1_555 covale 1.591 both C C sing B U 4 B O3' U 4 1_555 b C 5 C P C 1 1_555 metalc 2.073 A ASP 71 A OD1 ASP 17 1_555 A MG 201 E MG MG 1_555 metalc 2.087 A ASP 71 A OD2 ASP 17 1_555 A MG 214 R MG MG 1_555 metalc 2.364 A GLU 109 A OE1 GLU 55 1_555 A MG 201 E MG MG 1_555 metalc 2.430 A ASP 132 A OD1 ASP 78 1_555 A MG 201 E MG MG 1_555 metalc 2.906 C A ASP 192 A OD1 ASP 138 1_555 A K 202 F K K 1_555 metalc 1.999 A ASP 192 A OD1 ASP 138 1_555 A MG 214 R MG MG 1_555 metalc 2.727 A A MG 201 E MG MG 1_555 B U 4 B O3' U 4 1_555 metalc 2.627 C A MG 201 E MG MG 1_555 B U 4 B O3' U 4 1_555 metalc 2.656 A A MG 201 E MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.190 B A MG 201 E MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.221 C A MG 201 E MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.643 C C A K 202 F K K 1_555 A HOH 304 U O HOH 1_555 metalc 2.601 C A K 202 F K K 1_555 A HOH 308 U O HOH 1_555 metalc 2.916 C A K 202 F K K 1_555 A HOH 310 U O HOH 1_555 metalc 2.926 C A K 202 F K K 1_555 b G 6 C OP2 G 2 1_555 metalc 2.038 C A MG 214 R MG MG 1_555 A HOH 304 U O HOH 1_555 metalc 1.986 A MG 214 R MG MG 1_555 A HOH 310 U O HOH 1_555 metalc 2.231 A MG 214 R MG MG 1_555 A HOH 313 U O HOH 1_555 metalc 2.125 B A MG 214 R MG MG 1_555 b C 5 C OP3 C 1 1_555 metalc 2.020 A A MG 214 R MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.357 B A MG 214 R MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 2.202 C A MG 214 R MG MG 1_555 b C 5 C OP1 C 1 1_555 metalc 3.415 A b HOH 106 W O HOH 4_555 C K 101 S K K 1_555 metalc 3.057 A C DT 4 D O4 DT 4 1_555 C K 101 S K K 1_555 metalc 2.692 A C DG 5 D O6 DG 5 1_555 C K 101 S K K 1_555 metalc 3.311 A C K 101 S K K 1_555 C HOH 208 X O HOH 1_555 hydrog WATSON-CRICK B A 1 B N1 A 1 1_555 C DT 6 D N3 DT 6 1_555 hydrog WATSON-CRICK B A 1 B N6 A 1 1_555 C DT 6 D O4 DT 6 1_555 hydrog WATSON-CRICK B C 2 B N3 C 2 1_555 C DG 5 D N1 DG 5 1_555 hydrog WATSON-CRICK B C 2 B N4 C 2 1_555 C DG 5 D O6 DG 5 1_555 hydrog WATSON-CRICK B C 2 B O2 C 2 1_555 C DG 5 D N2 DG 5 1_555 hydrog WATSON-CRICK B A 3 B N1 A 3 1_555 C DT 4 D N3 DT 4 1_555 hydrog WATSON-CRICK B A 3 B N6 A 3 1_555 C DT 4 D O4 DT 4 1_555 hydrog WATSON-CRICK B U 4 B N3 U 4 1_555 C DA 3 D N1 DA 3 1_555 hydrog WATSON-CRICK B U 4 B O4 U 4 1_555 C DA 3 D N6 DA 3 1_555 hydrog WATSON-CRICK b C 5 C N3 C 1 1_555 C DG 2 D N1 DG 2 1_555 hydrog WATSON-CRICK b C 5 C N4 C 1 1_555 C DG 2 D O6 DG 2 1_555 hydrog WATSON-CRICK b C 5 C O2 C 1 1_555 C DG 2 D N2 DG 2 1_555 hydrog WATSON-CRICK b G 6 C N1 G 2 1_555 C DC 1 D N3 DC 1 1_555 hydrog WATSON-CRICK b G 6 C N2 G 2 1_555 C DC 1 D O2 DC 1 1_555 hydrog WATSON-CRICK b G 6 C O6 G 2 1_555 C DC 1 D N4 DC 1 1_555 hydrolase/dna/rna protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE, hydrolase-dna-rna complex A GLU 61 A GLU 7 1 A GLU 62 A GLU 8 2.02 A ASN 77 A ASN 23 1 A PRO 78 A PRO 24 -0.26 RNH1_BACHD UNP 1 59 Q9KEI9 AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK 6DOP PDB 2 1 6DOP 6DOP PDB 3 1 6DOP 6DOP PDB 4 1 6DOP 59 196 6DOP 59 196 Q9KEI9 A 1 5 142 1 4 6DOP 1 4 6DOP B 2 1 4 5 6 6DOP 5 6 6DOP b 3 1 2 1 6 6DOP 1 6 6DOP C 4 1 6 1 expression tag GLY 55 6DOP A Q9KEI9 UNP 1 1 expression tag SER 56 6DOP A Q9KEI9 UNP 2 1 expression tag HIS 57 6DOP A Q9KEI9 UNP 3 1 expression tag MET 58 6DOP A Q9KEI9 UNP 4 5 anti-parallel anti-parallel parallel parallel A VAL 93 A VAL 39 A GLY 103 A GLY 49 A GLY 79 A GLY 25 A ASP 87 A ASP 33 A LEU 68 A LEU 14 A GLN 75 A GLN 21 A ILE 129 A ILE 75 A SER 131 A SER 77 A ILE 178 A ILE 124 A LYS 180 A LYS 126 binding site for residue MG A 201 A MG 201 Software 5 binding site for residue K A 202 A K 202 Software 9 binding site for residue IOD A 203 A IOD 203 Software 1 binding site for residue IOD A 205 A IOD 205 Software 3 binding site for residue IOD A 206 A IOD 206 Software 1 binding site for residue GOL A 207 A GOL 207 Software 6 binding site for residue GOL A 208 A GOL 208 Software 4 binding site for residue GOL A 209 A GOL 209 Software 8 binding site for residue GOL A 210 A GOL 210 Software 5 binding site for residue GOL A 211 A GOL 211 Software 9 binding site for residue PGE A 212 A PGE 212 Software 7 binding site for residue GOL A 213 A GOL 213 Software 6 binding site for residue MG A 214 A MG 214 Software 7 binding site for residue K C 101 C K 101 Software 3 binding site for residue EDO C 102 C EDO 102 Software 6 A ASP 71 A ASP 17 5 1_555 A GLU 109 A GLU 55 5 1_555 A ASP 132 A ASP 78 5 1_555 B U 4 B U 4 5 1_555 b C 5 C C 1 5 1_555 A ASP 192 A ASP 138 9 1_555 A GLY 194 A GLY 140 9 1_555 A ARG 195 A ARG 141 9 1_555 A MG 214 R MG 9 1_555 A HOH 304 U HOH 9 1_555 A HOH 308 U HOH 9 1_555 A HOH 310 U HOH 9 1_555 b C 5 C C 1 9 1_555 b G 6 C G 2 9 1_555 A TYR 83 A TYR 29 1 1_555 A ILE 64 A ILE 10 3 1_555 A HOH 436 U HOH 3 1_555 A HOH 439 U HOH 3 1_555 A HOH 409 U HOH 1 4_556 A ILE 102 A ILE 48 6 1_555 A VAL 150 A VAL 96 6 1_555 A ASN 152 A ASN 98 6 1_555 A GLU 154 A GLU 100 6 1_555 A HOH 314 U HOH 6 1_555 C HOH 211 X HOH 6 1_555 A ASN 77 A ASN 23 4 1_555 A PRO 78 A PRO 24 4 1_555 B HOH 308 V HOH 4 4_545 C DG 2 D DG 2 4 1_555 A GLU 66 A GLU 12 8 2_656 A LEU 94 A LEU 40 8 1_555 A TYR 119 A TYR 65 8 1_555 A ARG 123 A ARG 69 8 1_555 A SER 125 A SER 71 8 1_555 A LYS 127 A LYS 73 8 1_555 A HOH 303 U HOH 8 2_656 A HOH 394 U HOH 8 1_555 A LYS 143 A LYS 89 5 1_555 A THR 173 A THR 119 5 1_555 A TYR 174 A TYR 120 5 1_555 A HOH 309 U HOH 5 1_555 A HOH 372 U HOH 5 1_555 A HIS 115 A HIS 61 9 1_555 A TYR 119 A TYR 65 9 1_555 A GLU 122 A GLU 68 9 1_555 A ARG 123 A ARG 69 9 1_555 A GLU 167 A GLU 113 9 4_546 A ASN 170 A ASN 116 9 4_546 A GOL 213 Q GOL 9 1_555 A HOH 307 U HOH 9 1_555 A HOH 389 U HOH 9 4_546 A LYS 180 A LYS 126 7 1_555 A GLN 182 A GLN 128 7 1_555 A THR 183 A THR 129 7 1_555 A ASP 184 A ASP 130 7 1_555 A HOH 317 U HOH 7 1_555 B A 3 B A 3 7 1_555 B U 4 B U 4 7 1_555 A HIS 115 A HIS 61 6 1_555 A ARG 118 A ARG 64 6 1_555 A ASN 170 A ASN 116 6 4_546 A GOL 211 O GOL 6 1_555 A HOH 305 U HOH 6 1_555 A HOH 379 U HOH 6 1_555 A ASP 71 A ASP 17 7 1_555 A ASP 192 A ASP 138 7 1_555 A K 202 F K 7 1_555 A HOH 304 U HOH 7 1_555 A HOH 310 U HOH 7 1_555 A HOH 313 U HOH 7 1_555 b C 5 C C 1 7 1_555 C DT 4 D DT 4 3 1_555 C DG 5 D DG 5 3 1_555 C HOH 213 X HOH 3 1_555 A THR 148 A THR 94 6 1_555 C DT 4 D DT 4 6 1_555 C DG 5 D DG 5 6 1_555 C DT 6 D DT 6 6 1_555 C HOH 201 X HOH 6 1_555 C HOH 202 X HOH 6 1_555 5 C 1 2 1