0.012288
0.000000
0.001296
0.000000
0.026412
0.000000
0.000000
0.000000
0.016262
0.000000
0.000000
0.000000
Samara, N.L.
Yang, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
96.020
90.000
81.377
37.862
61.835
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
N
C
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
N
163
N
N
Y
164
N
N
Y
165
N
C
Y
166
N
N
Y
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
N
194
N
N
N
195
N
C
N
196
N
O
N
197
N
N
N
198
N
C
N
199
N
N
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
O
N
217
N
P
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
C
N
222
R
C
N
223
N
O
N
224
S
C
N
225
N
O
N
226
N
C
N
227
R
C
Y
228
N
N
Y
229
N
C
Y
230
N
N
Y
231
N
C
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
N
N
237
N
N
Y
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
O
N
254
N
P
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
C
N
259
R
C
N
260
N
O
N
261
S
C
N
262
N
O
N
263
N
C
N
264
R
C
N
265
N
N
N
266
N
C
N
267
N
O
N
268
N
N
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
O
N
300
N
P
N
301
N
O
N
302
N
O
N
303
N
O
N
304
N
C
N
305
R
C
N
306
N
O
N
307
S
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
R
C
Y
312
N
N
Y
313
N
C
Y
314
N
N
Y
315
N
C
N
316
N
C
N
317
N
O
N
318
N
N
N
319
N
C
N
320
N
N
N
321
N
N
Y
322
N
C
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
N
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
N
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
S
C
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
I
N
447
N
K
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
C
N
478
N
N
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
N
C
N
500
N
C
N
501
N
S
N
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
MG
N
516
N
C
N
517
N
O
N
518
N
C
N
519
N
O
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
C
N
524
N
C
N
525
N
O
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
N
N
541
S
C
N
542
N
C
N
543
N
O
N
544
N
C
Y
545
N
C
Y
546
N
C
Y
547
N
C
Y
548
N
C
Y
549
N
C
Y
550
N
C
N
551
N
O
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
N
N
564
S
C
N
565
N
C
N
566
N
O
N
567
N
C
N
568
N
C
N
569
N
C
N
570
N
O
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
N
N
581
S
C
N
582
N
C
N
583
N
O
N
584
N
C
N
585
N
O
N
586
N
O
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
N
N
595
S
C
N
596
N
C
N
597
N
O
N
598
R
C
N
599
N
O
N
600
N
C
N
601
N
O
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
N
N
612
S
C
N
613
N
C
N
614
N
O
N
615
N
C
Y
616
N
C
Y
617
N
C
Y
618
N
C
Y
619
N
N
Y
620
N
C
Y
621
N
C
Y
622
N
C
Y
623
N
C
Y
624
N
C
N
625
N
O
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
N
N
639
S
C
N
640
N
C
N
641
N
O
N
642
N
C
Y
643
N
C
Y
644
N
C
Y
645
N
C
Y
646
N
C
Y
647
N
C
Y
648
N
C
N
649
N
O
N
650
N
O
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
O
N
663
N
P
N
664
N
O
N
665
N
O
N
666
N
O
N
667
N
C
N
668
R
C
N
669
N
O
N
670
S
C
N
671
N
O
N
672
R
C
N
673
N
O
N
674
R
C
N
675
N
N
N
676
N
C
N
677
N
O
N
678
N
N
N
679
N
C
N
680
N
O
N
681
N
C
N
682
N
C
N
683
N
H
N
684
N
H
N
685
N
H
N
686
N
H
N
687
N
H
N
688
N
H
N
689
N
H
N
690
N
H
N
691
N
H
N
692
N
H
N
693
N
H
N
694
N
H
N
695
N
H
N
696
N
N
N
697
S
C
N
698
N
C
N
699
N
O
N
700
N
C
N
701
N
C
N
702
N
C
N
703
N
O
N
704
N
H
N
705
N
H
N
706
N
H
N
707
N
H
N
708
N
H
N
709
N
H
N
710
N
H
N
711
N
H
N
712
N
H
N
713
N
H
N
714
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
Y
173
N
sing
Y
174
N
doub
N
175
N
sing
Y
176
N
doub
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
N
181
N
sing
Y
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
sing
Y
242
N
sing
Y
243
N
doub
N
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
doub
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
sing
Y
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
sing
Y
414
N
doub
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
doub
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
Y
544
N
doub
Y
545
N
sing
Y
546
N
sing
N
547
N
sing
Y
548
N
doub
N
549
N
sing
Y
550
N
doub
N
551
N
sing
Y
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
doub
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
doub
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
doub
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
doub
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
Y
613
N
doub
Y
614
N
sing
Y
615
N
sing
N
616
N
sing
Y
617
N
doub
Y
618
N
sing
Y
619
N
sing
N
620
N
sing
Y
621
N
sing
Y
622
N
doub
N
623
N
sing
Y
624
N
doub
N
625
N
sing
Y
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
doub
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
Y
641
N
doub
Y
642
N
sing
Y
643
N
sing
N
644
N
sing
Y
645
N
doub
N
646
N
sing
Y
647
N
doub
N
648
N
sing
Y
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
doub
N
657
N
sing
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
doub
N
681
N
sing
N
682
N
sing
N
683
N
sing
N
684
N
doub
N
685
N
sing
N
686
N
doub
N
687
N
sing
N
688
N
sing
N
689
N
sing
N
690
N
sing
N
691
N
sing
N
692
N
sing
N
693
N
sing
N
694
N
sing
N
695
N
doub
N
696
N
sing
N
697
N
sing
N
698
N
sing
N
699
N
sing
N
700
N
sing
N
701
N
sing
N
702
N
sing
N
703
N
sing
N
704
N
sing
N
705
N
sing
N
706
N
sing
US
Nat. Struct. Mol. Biol.
1545-9985
25
715
721
10.1038/s41594-018-0099-4
30076410
Cation trafficking propels RNA hydrolysis.
2018
0000-0002-3591-2195
10.2210/pdb6doq/pdb
pdb_00006doq
100
1
CCD
2016-02-15
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
22-BM
APS
1
SYNCHROTRON
APS BEAMLINE 22-BM
16330.462
Ribonuclease H
3.1.26.4
Catalytic Domain
1
man
polymer
1224.802
RNA (5'-R(*AP*CP*AP*U)-3')
1
syn
polymer
605.430
RNA (5'-R(P*CP*G)-3')
1
syn
polymer
1824.228
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3')
1
syn
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
39.098
POTASSIUM ION
3
syn
non-polymer
126.904
IODIDE ION
4
syn
non-polymer
92.094
GLYCEROL
5
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
178
nat
water
RNase H
no
no
GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ
TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ
TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
A
polypeptide(L)
no
no
ACAU
ACAU
B
polyribonucleotide
no
no
CG
CG
b
polyribonucleotide
no
no
(DC)(DG)(DA)(DT)(DG)(DT)
CGATGT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125
sample
1
142
rnhA, BH0863
272558
Bacillus halodurans
562
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pET15b
1
2.44
49.58
0.000
VAPOR DIFFUSION, HANGING DROP
14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2
294
-4.808
1
20
B
1
C
6
0.187
B_A1:DT6_C
1
-8.072
0.160
-0.081
-0.148
3.395
1
19
B
2
C
5
2.844
B_C2:DG5_C
2
-14.169
0.087
0.084
-0.192
-6.912
1
20
B
3
C
4
1.884
B_A3:DT4_C
3
-11.120
0.119
-0.242
-0.149
-2.904
1
20
B
4
C
3
1.005
B_U4:DA3_C
4
-9.773
-0.049
-0.042
-0.161
-7.709
1
19
b
5
C
2
1.487
b_C5:DG2_C
5
-7.321
0.114
0.157
-0.170
-5.664
1
19
b
6
C
1
-0.631
b_G6:DC1_C
6
-8.304
-0.265
-0.047
-0.107
2.935
34.959
B
B
1
2
7.295
C
C
6
5
3.127
4.370
0.790
-1.059
BB_A1C2:DG5DT6_CC
1
-1.694
2.828
34.653
-2.377
-1.553
2.606
29.911
B
B
2
3
23.975
C
C
5
4
3.508
12.024
-0.477
-1.435
BB_C2A3:DT4DG5_CC
2
2.509
-5.003
27.325
-5.219
1.433
3.204
24.671
B
B
3
4
4.631
C
C
4
3
3.296
1.973
1.007
-2.174
BB_A3U4:DA3DT4_CC
3
2.710
-6.363
24.446
-5.689
-1.529
3.064
33.469
B
b
4
5
8.167
C
C
3
2
3.361
4.689
-0.043
-1.953
Bb_U4C5:DG2DA3_CC
4
0.065
-0.113
33.149
-4.154
0.085
2.727
23.892
b
b
5
6
16.532
C
C
2
1
3.304
6.666
0.918
-2.063
bb_C5G6:DC1DG2_CC
5
6.548
-16.240
22.013
-7.072
-0.165
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2018-08-15
1
1
2023-10-11
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
N
RCSB
Y
RCSB
2018-06-09
REL
REL
The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal.
Cleavage of RNA by B. Halodurans Ribonuclease H1
undefined
1
A
O
HOH
444
6.00
1
A
O
HOH
445
6.62
1
A
O
HOH
446
7.47
K
K
SUBJECT OF INVESTIGATION
MG
MG
SUBJECT OF INVESTIGATION
MG
MAGNESIUM ION
K
POTASSIUM ION
IOD
IODIDE ION
GOL
GLYCEROL
PGE
TRIETHYLENE GLYCOL
EDO
1,2-ETHANEDIOL
HOH
water
32630
synthetic construct
sample
1
4
32630
synthetic construct
sample
1
2
32630
synthetic construct
sample
1
6
1ZBL
pdbid 1ZBL
PDB
experimental model
MG
202
5
MG
MG
201
A
K
211
6
K
K
202
A
K
212
6
K
K
203
A
IOD
1
7
IOD
IOD
204
A
IOD
2
7
IOD
IOD
205
A
IOD
3
7
IOD
IOD
206
A
IOD
4
7
IOD
IOD
207
A
GOL
2
8
GOL
GOL
208
A
GOL
3
8
GOL
GOL
209
A
GOL
4
8
GOL
GOL
210
A
GOL
6
8
GOL
GOL
211
A
GOL
7
8
GOL
GOL
212
A
PGE
8
9
PGE
PGE
213
A
MG
201
5
MG
MG
214
A
K
213
6
K
K
101
C
EDO
1
10
EDO
EDO
102
C
HOH
112
11
HOH
HOH
301
A
HOH
26
11
HOH
HOH
302
A
HOH
104
11
HOH
HOH
303
A
HOH
88
11
HOH
HOH
304
A
HOH
93
11
HOH
HOH
305
A
HOH
106
11
HOH
HOH
306
A
HOH
182
11
HOH
HOH
307
A
HOH
142
11
HOH
HOH
308
A
HOH
140
11
HOH
HOH
309
A
HOH
180
11
HOH
HOH
310
A
HOH
123
11
HOH
HOH
311
A
HOH
84
11
HOH
HOH
312
A
HOH
167
11
HOH
HOH
313
A
HOH
145
11
HOH
HOH
314
A
HOH
134
11
HOH
HOH
315
A
HOH
38
11
HOH
HOH
316
A
HOH
59
11
HOH
HOH
317
A
HOH
137
11
HOH
HOH
318
A
HOH
27
11
HOH
HOH
319
A
HOH
96
11
HOH
HOH
320
A
HOH
55
11
HOH
HOH
321
A
HOH
172
11
HOH
HOH
322
A
HOH
151
11
HOH
HOH
323
A
HOH
56
11
HOH
HOH
324
A
HOH
49
11
HOH
HOH
325
A
HOH
78
11
HOH
HOH
326
A
HOH
1
11
HOH
HOH
327
A
HOH
164
11
HOH
HOH
328
A
HOH
105
11
HOH
HOH
329
A
HOH
52
11
HOH
HOH
330
A
HOH
101
11
HOH
HOH
331
A
HOH
46
11
HOH
HOH
332
A
HOH
16
11
HOH
HOH
333
A
HOH
23
11
HOH
HOH
334
A
HOH
6
11
HOH
HOH
335
A
HOH
127
11
HOH
HOH
336
A
HOH
111
11
HOH
HOH
337
A
HOH
119
11
HOH
HOH
338
A
HOH
118
11
HOH
HOH
339
A
HOH
117
11
HOH
HOH
340
A
HOH
86
11
HOH
HOH
341
A
HOH
29
11
HOH
HOH
342
A
HOH
124
11
HOH
HOH
343
A
HOH
69
11
HOH
HOH
344
A
HOH
24
11
HOH
HOH
345
A
HOH
166
11
HOH
HOH
346
A
HOH
43
11
HOH
HOH
347
A
HOH
65
11
HOH
HOH
348
A
HOH
45
11
HOH
HOH
349
A
HOH
8
11
HOH
HOH
350
A
HOH
121
11
HOH
HOH
351
A
HOH
177
11
HOH
HOH
352
A
HOH
150
11
HOH
HOH
353
A
HOH
63
11
HOH
HOH
354
A
HOH
53
11
HOH
HOH
355
A
HOH
102
11
HOH
HOH
356
A
HOH
35
11
HOH
HOH
357
A
HOH
77
11
HOH
HOH
358
A
HOH
50
11
HOH
HOH
359
A
HOH
75
11
HOH
HOH
360
A
HOH
114
11
HOH
HOH
361
A
HOH
95
11
HOH
HOH
362
A
HOH
110
11
HOH
HOH
363
A
HOH
107
11
HOH
HOH
364
A
HOH
10
11
HOH
HOH
365
A
HOH
13
11
HOH
HOH
366
A
HOH
141
11
HOH
HOH
367
A
HOH
155
11
HOH
HOH
368
A
HOH
115
11
HOH
HOH
369
A
HOH
67
11
HOH
HOH
370
A
HOH
28
11
HOH
HOH
371
A
HOH
97
11
HOH
HOH
372
A
HOH
120
11
HOH
HOH
373
A
HOH
174
11
HOH
HOH
374
A
HOH
109
11
HOH
HOH
375
A
HOH
15
11
HOH
HOH
376
A
HOH
14
11
HOH
HOH
377
A
HOH
122
11
HOH
HOH
378
A
HOH
170
11
HOH
HOH
379
A
HOH
183
11
HOH
HOH
380
A
HOH
33
11
HOH
HOH
381
A
HOH
60
11
HOH
HOH
382
A
HOH
156
11
HOH
HOH
383
A
HOH
3
11
HOH
HOH
384
A
HOH
47
11
HOH
HOH
385
A
HOH
99
11
HOH
HOH
386
A
HOH
42
11
HOH
HOH
387
A
HOH
54
11
HOH
HOH
388
A
HOH
138
11
HOH
HOH
389
A
HOH
94
11
HOH
HOH
390
A
HOH
20
11
HOH
HOH
391
A
HOH
2
11
HOH
HOH
392
A
HOH
175
11
HOH
HOH
393
A
HOH
25
11
HOH
HOH
394
A
HOH
154
11
HOH
HOH
395
A
HOH
158
11
HOH
HOH
396
A
HOH
132
11
HOH
HOH
397
A
HOH
159
11
HOH
HOH
398
A
HOH
51
11
HOH
HOH
399
A
HOH
61
11
HOH
HOH
400
A
HOH
171
11
HOH
HOH
401
A
HOH
100
11
HOH
HOH
402
A
HOH
168
11
HOH
HOH
403
A
HOH
5
11
HOH
HOH
404
A
HOH
81
11
HOH
HOH
405
A
HOH
58
11
HOH
HOH
406
A
HOH
108
11
HOH
HOH
407
A
HOH
7
11
HOH
HOH
408
A
HOH
179
11
HOH
HOH
409
A
HOH
139
11
HOH
HOH
410
A
HOH
82
11
HOH
HOH
411
A
HOH
176
11
HOH
HOH
412
A
HOH
130
11
HOH
HOH
413
A
HOH
79
11
HOH
HOH
414
A
HOH
147
11
HOH
HOH
415
A
HOH
131
11
HOH
HOH
416
A
HOH
169
11
HOH
HOH
417
A
HOH
62
11
HOH
HOH
418
A
HOH
144
11
HOH
HOH
419
A
HOH
19
11
HOH
HOH
420
A
HOH
18
11
HOH
HOH
421
A
HOH
11
11
HOH
HOH
422
A
HOH
178
11
HOH
HOH
423
A
HOH
92
11
HOH
HOH
424
A
HOH
80
11
HOH
HOH
425
A
HOH
143
11
HOH
HOH
426
A
HOH
133
11
HOH
HOH
427
A
HOH
181
11
HOH
HOH
428
A
HOH
188
11
HOH
HOH
429
A
HOH
157
11
HOH
HOH
430
A
HOH
116
11
HOH
HOH
431
A
HOH
165
11
HOH
HOH
432
A
HOH
113
11
HOH
HOH
433
A
HOH
83
11
HOH
HOH
434
A
HOH
160
11
HOH
HOH
435
A
HOH
66
11
HOH
HOH
436
A
HOH
41
11
HOH
HOH
437
A
HOH
32
11
HOH
HOH
438
A
HOH
89
11
HOH
HOH
439
A
HOH
68
11
HOH
HOH
440
A
HOH
73
11
HOH
HOH
441
A
HOH
125
11
HOH
HOH
442
A
HOH
85
11
HOH
HOH
443
A
HOH
37
11
HOH
HOH
444
A
HOH
90
11
HOH
HOH
445
A
HOH
44
11
HOH
HOH
446
A
HOH
87
11
HOH
HOH
101
B
HOH
72
11
HOH
HOH
102
B
HOH
17
11
HOH
HOH
103
B
HOH
71
11
HOH
HOH
104
B
HOH
153
11
HOH
HOH
105
B
HOH
9
11
HOH
HOH
106
B
HOH
98
11
HOH
HOH
107
B
HOH
136
11
HOH
HOH
108
B
HOH
173
11
HOH
HOH
109
B
HOH
36
11
HOH
HOH
301
b
HOH
64
11
HOH
HOH
302
b
HOH
103
11
HOH
HOH
303
b
HOH
135
11
HOH
HOH
304
b
HOH
185
11
HOH
HOH
201
C
HOH
148
11
HOH
HOH
202
C
HOH
186
11
HOH
HOH
203
C
HOH
12
11
HOH
HOH
204
C
HOH
162
11
HOH
HOH
205
C
HOH
128
11
HOH
HOH
206
C
HOH
31
11
HOH
HOH
207
C
HOH
34
11
HOH
HOH
208
C
HOH
184
11
HOH
HOH
209
C
HOH
129
11
HOH
HOH
210
C
HOH
163
11
HOH
HOH
211
C
HOH
4
11
HOH
HOH
212
C
HOH
21
11
HOH
HOH
213
C
HOH
48
11
HOH
HOH
214
C
HOH
76
11
HOH
HOH
215
C
HOH
57
11
HOH
HOH
216
C
HOH
187
11
HOH
HOH
217
C
HOH
161
11
HOH
HOH
218
C
HOH
40
11
HOH
HOH
219
C
n
1
55
A
n
2
56
A
n
3
57
A
n
4
58
A
n
5
59
A
n
6
60
A
GLU
61
n
7
GLU
61
A
GLU
62
n
8
GLU
62
A
ILE
63
n
9
ILE
63
A
ILE
64
n
10
ILE
64
A
TRP
65
n
11
TRP
65
A
GLU
66
n
12
GLU
66
A
SER
67
n
13
SER
67
A
LEU
68
n
14
LEU
68
A
SER
69
n
15
SER
69
A
VAL
70
n
16
VAL
70
A
ASP
71
n
17
ASP
71
A
VAL
72
n
18
VAL
72
A
GLY
73
n
19
GLY
73
A
SER
74
n
20
SER
74
A
GLN
75
n
21
GLN
75
A
GLY
76
n
22
GLY
76
A
ASN
77
n
23
ASN
77
A
PRO
78
n
24
PRO
78
A
GLY
79
n
25
GLY
79
A
ILE
80
n
26
ILE
80
A
VAL
81
n
27
VAL
81
A
GLU
82
n
28
GLU
82
A
TYR
83
n
29
TYR
83
A
LYS
84
n
30
LYS
84
A
GLY
85
n
31
GLY
85
A
VAL
86
n
32
VAL
86
A
ASP
87
n
33
ASP
87
A
THR
88
n
34
THR
88
A
LYS
89
n
35
LYS
89
A
THR
90
n
36
THR
90
A
GLY
91
n
37
GLY
91
A
GLU
92
n
38
GLU
92
A
VAL
93
n
39
VAL
93
A
LEU
94
n
40
LEU
94
A
PHE
95
n
41
PHE
95
A
GLU
96
n
42
GLU
96
A
ARG
97
n
43
ARG
97
A
GLU
98
n
44
GLU
98
A
PRO
99
n
45
PRO
99
A
ILE
100
n
46
ILE
100
A
PRO
101
n
47
PRO
101
A
ILE
102
n
48
ILE
102
A
GLY
103
n
49
GLY
103
A
THR
104
n
50
THR
104
A
ASN
105
n
51
ASN
105
A
ASN
106
n
52
ASN
106
A
MET
107
n
53
MET
107
A
GLY
108
n
54
GLY
108
A
GLU
109
n
55
GLU
109
A
PHE
110
n
56
PHE
110
A
LEU
111
n
57
LEU
111
A
ALA
112
n
58
ALA
112
A
ILE
113
n
59
ILE
113
A
VAL
114
n
60
VAL
114
A
HIS
115
n
61
HIS
115
A
GLY
116
n
62
GLY
116
A
LEU
117
n
63
LEU
117
A
ARG
118
n
64
ARG
118
A
TYR
119
n
65
TYR
119
A
LEU
120
n
66
LEU
120
A
LYS
121
n
67
LYS
121
A
GLU
122
n
68
GLU
122
A
ARG
123
n
69
ARG
123
A
ASN
124
n
70
ASN
124
A
SER
125
n
71
SER
125
A
ARG
126
n
72
ARG
126
A
LYS
127
n
73
LYS
127
A
PRO
128
n
74
PRO
128
A
ILE
129
n
75
ILE
129
A
TYR
130
n
76
TYR
130
A
SER
131
n
77
SER
131
A
ASP
132
n
78
ASP
132
A
SER
133
n
79
SER
133
A
GLN
134
n
80
GLN
134
A
THR
135
n
81
THR
135
A
ALA
136
n
82
ALA
136
A
ILE
137
n
83
ILE
137
A
LYS
138
n
84
LYS
138
A
TRP
139
n
85
TRP
139
A
VAL
140
n
86
VAL
140
A
LYS
141
n
87
LYS
141
A
ASP
142
n
88
ASP
142
A
LYS
143
n
89
LYS
143
A
LYS
144
n
90
LYS
144
A
ALA
145
n
91
ALA
145
A
LYS
146
n
92
LYS
146
A
SER
147
n
93
SER
147
A
THR
148
n
94
THR
148
A
LEU
149
n
95
LEU
149
A
VAL
150
n
96
VAL
150
A
ARG
151
n
97
ARG
151
A
ASN
152
n
98
ASN
152
A
GLU
153
n
99
GLU
153
A
GLU
154
n
100
GLU
154
A
THR
155
n
101
THR
155
A
ALA
156
n
102
ALA
156
A
LEU
157
n
103
LEU
157
A
ILE
158
n
104
ILE
158
A
TRP
159
n
105
TRP
159
A
LYS
160
n
106
LYS
160
A
LEU
161
n
107
LEU
161
A
VAL
162
n
108
VAL
162
A
ASP
163
n
109
ASP
163
A
GLU
164
n
110
GLU
164
A
ALA
165
n
111
ALA
165
A
GLU
166
n
112
GLU
166
A
GLU
167
n
113
GLU
167
A
TRP
168
n
114
TRP
168
A
LEU
169
n
115
LEU
169
A
ASN
170
n
116
ASN
170
A
THR
171
n
117
THR
171
A
HIS
172
n
118
HIS
172
A
THR
173
n
119
THR
173
A
TYR
174
n
120
TYR
174
A
GLU
175
n
121
GLU
175
A
THR
176
n
122
THR
176
A
PRO
177
n
123
PRO
177
A
ILE
178
n
124
ILE
178
A
LEU
179
n
125
LEU
179
A
LYS
180
n
126
LYS
180
A
TRP
181
n
127
TRP
181
A
GLN
182
n
128
GLN
182
A
THR
183
n
129
THR
183
A
ASP
184
n
130
ASP
184
A
LYS
185
n
131
LYS
185
A
TRP
186
n
132
TRP
186
A
GLY
187
n
133
GLY
187
A
GLU
188
n
134
GLU
188
A
ILE
189
n
135
ILE
189
A
LYS
190
n
136
LYS
190
A
ALA
191
n
137
ALA
191
A
ASP
192
n
138
ASP
192
A
TYR
193
n
139
TYR
193
A
GLY
194
n
140
GLY
194
A
ARG
195
n
141
ARG
195
A
LYS
196
n
142
LYS
196
A
A
1
n
1
A
1
B
C
2
n
2
C
2
B
A
3
n
3
A
3
B
U
4
n
4
U
4
B
C
5
n
1
C
5
b
G
6
n
2
G
6
b
DC
1
n
1
DC
1
C
DG
2
n
2
DG
2
C
DA
3
n
3
DA
3
C
DT
4
n
4
DT
4
C
DG
5
n
5
DG
5
C
DT
6
n
6
DT
6
C
3.4008
0.8935
1.4647
3.7065
0.7095
3.0235
0.1184
0.6738
0.0489
-0.3658
-0.2570
-0.9302
0.1676
1.4127
0.0783
0.2395
0.1159
0.0779
0.5492
0.0286
0.2623
refined
40.595
-4.381
18.697
X-RAY DIFFRACTION
3.5146
-1.5676
4.5469
1.7025
-1.4909
6.2142
0.2400
0.3346
-0.2709
-0.1974
-0.1390
0.0789
0.2562
0.0172
-0.1224
0.1989
0.0049
0.0023
0.2187
-0.0109
0.1106
refined
19.954
-6.219
16.603
X-RAY DIFFRACTION
6.2450
2.0467
-6.2113
9.0725
0.1833
9.2968
-0.1325
-0.4429
-1.1639
0.1713
0.0067
-0.6238
0.9112
0.5758
0.1070
0.2556
0.0737
-0.0208
0.2241
0.0469
0.2084
refined
28.288
-11.584
23.904
X-RAY DIFFRACTION
2.9221
-0.0709
1.5517
0.9758
0.1401
3.2859
0.0754
-0.1727
-0.0763
-0.0344
-0.0755
0.0233
0.0566
-0.1843
0.0005
0.1634
0.0126
0.0265
0.1871
0.0037
0.0861
refined
21.773
-1.238
23.252
X-RAY DIFFRACTION
4.2799
-2.8605
-0.3050
3.7759
1.9125
1.8829
0.2723
0.2994
0.3357
-0.3051
-0.1231
-0.3252
-0.7635
0.0456
-0.1547
0.3203
0.0036
0.0456
0.2002
0.0394
0.1263
refined
23.915
9.382
16.471
X-RAY DIFFRACTION
7.5698
1.7190
1.3308
2.4058
1.0718
5.4306
0.3769
0.0793
0.4207
-0.1244
-0.5982
0.4817
-0.6957
-1.0859
0.1236
0.3338
0.2574
-0.0199
0.4567
-0.0941
0.1860
refined
8.596
7.390
16.000
X-RAY DIFFRACTION
5.5408
1.3234
4.1979
2.3710
2.8269
7.3389
0.1471
-0.2398
-0.0053
-0.0310
-0.3287
0.1523
-0.2228
-0.7458
0.1722
0.2006
0.0658
0.0168
0.2956
-0.0364
0.1068
refined
12.486
5.679
24.752
X-RAY DIFFRACTION
4.4298
-4.9988
-5.8765
6.9457
5.7897
8.3700
0.1087
-0.4676
0.4467
-0.1020
0.1816
-0.3493
-0.3440
0.3359
-0.1909
0.2176
-0.0161
-0.0059
0.2347
-0.0101
0.1290
refined
26.525
8.464
30.171
X-RAY DIFFRACTION
1.2017
-1.5986
-0.6822
4.2565
3.9675
5.7570
0.1621
0.4497
0.0623
-0.5857
-0.2020
-0.5159
-0.2258
0.6089
-0.1947
0.2601
0.0895
0.1710
0.4858
0.0446
0.0138
refined
34.724
-0.728
12.235
X-RAY DIFFRACTION
2.7646
-0.3443
-4.7035
4.6761
0.0690
8.0517
-0.2084
0.8828
-0.4665
-0.8320
0.0099
0.2213
0.8369
-0.4397
0.2452
0.4474
0.0431
-0.0019
0.3731
-0.0862
0.1449
refined
25.369
-9.654
11.490
X-RAY DIFFRACTION
2.9466
-0.3508
1.9754
4.1645
-1.0006
3.2841
0.0435
0.3473
-0.1399
-0.5453
-0.2597
-0.1892
0.0660
0.1799
0.2253
0.3695
0.0739
0.0348
0.3402
0.0257
0.1294
refined
23.816
0.541
5.272
X-RAY DIFFRACTION
2.2487
-1.1797
-2.1762
1.0004
0.0297
5.2622
0.0050
0.3562
-0.1255
-0.8224
-0.3273
0.1249
-0.2526
-0.2118
0.2811
0.4719
0.0986
-0.0248
0.3267
-0.0124
0.1371
refined
16.401
3.493
3.104
X-RAY DIFFRACTION
A
61
A
66
X-RAY DIFFRACTION
1
( CHAIN A AND RESID 61:66 )
A
67
A
87
X-RAY DIFFRACTION
2
( CHAIN A AND RESID 67:87 )
A
88
A
96
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 88:96 )
A
97
A
133
X-RAY DIFFRACTION
4
( CHAIN A AND RESID 97:133 )
A
134
A
142
X-RAY DIFFRACTION
5
( CHAIN A AND RESID 134:142 )
A
143
A
155
X-RAY DIFFRACTION
6
( CHAIN A AND RESID 143:155 )
A
156
A
169
X-RAY DIFFRACTION
7
( CHAIN A AND RESID 156:169 )
A
170
A
177
X-RAY DIFFRACTION
8
( CHAIN A AND RESID 170:177 )
A
178
A
186
X-RAY DIFFRACTION
9
( CHAIN A AND RESID 178:186 )
A
187
A
196
X-RAY DIFFRACTION
10
( CHAIN A AND RESID 187:196 )
B
1
B
4
X-RAY DIFFRACTION
11
( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )
b
5
b
6
X-RAY DIFFRACTION
11
( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )
C
1
C
6
X-RAY DIFFRACTION
12
( CHAIN C AND RESID 1:6 )
author_and_software_defined_assembly
PISA
4
tetrameric
none
6290
-32
7590
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
GLU
109
A
OE1
GLU
55
1_555
98.4
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
132
A
OD1
ASP
78
1_555
128.8
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
132
A
OD1
ASP
78
1_555
96.1
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
110.0
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
143.9
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
48.6
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
A
B
O3'
U
4
1_555
141.5
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
A
B
O3'
U
4
1_555
89.0
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
A
B
O3'
U
4
1_555
87.4
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
A
B
O3'
U
4
1_555
82.5
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
145.0
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
86.9
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
84.4
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
82.3
B
U
4
A
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
B
U
4
C
B
O3'
U
4
1_555
3.8
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
89.7
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
117.8
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
125.0
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
85.0
B
U
4
A
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
54.3
B
U
4
C
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
58.1
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
87.9
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
111.8
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
130.4
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
91.6
B
U
4
A
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
54.7
B
U
4
C
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
58.5
b
C
5
A
C
OP1
C
1
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
6.6
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
87.5
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
111.7
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
130.8
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
91.8
B
U
4
A
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
55.0
B
U
4
C
B
O3'
U
4
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
58.7
b
C
5
A
C
OP1
C
1
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
6.9
b
C
5
B
C
OP1
C
1
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
0.4
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
A
ASP
192
A
OD1
ASP
138
1_555
103.2
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
A
HOH
304
C
U
O
HOH
1_555
174.6
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
A
HOH
304
C
U
O
HOH
1_555
71.5
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
156.7
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
95.0
A
HOH
304
C
U
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP3
C
1
1_555
27.1
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
108.5
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
147.3
A
HOH
304
C
U
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
76.9
b
C
5
B
C
OP3
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
A
C
OP1
C
1
1_555
57.1
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
93.9
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
162.0
A
HOH
304
C
U
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
91.4
b
C
5
B
C
OP3
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
70.0
b
C
5
A
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
B
C
OP1
C
1
1_555
14.8
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
93.8
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
162.2
A
HOH
304
C
U
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
91.5
b
C
5
B
C
OP3
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
70.0
b
C
5
A
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
14.9
b
C
5
B
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
C
5
C
C
OP1
C
1
1_555
0.3
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
88.9
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
94.1
A
HOH
304
C
U
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
90.6
b
C
5
B
C
OP3
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
75.3
b
C
5
A
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
94.6
b
C
5
B
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
91.7
b
C
5
C
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
91.3
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
87.2
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
91.5
A
HOH
304
C
U
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
93.8
b
C
5
B
C
OP3
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
107.0
b
C
5
A
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
82.2
b
C
5
B
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
83.9
b
C
5
C
C
OP1
C
1
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
84.2
b
HOH
301
W
O
HOH
1_555
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
173.8
A
ASP
132
A
OD2
ASP
78
1_555
A
K
203
B
G
K
K
1_555
A
GLU
188
A
OE2
GLU
134
1_555
82.0
A
ASP
132
A
OD2
ASP
78
1_555
A
K
203
B
G
K
K
1_555
A
HOH
303
U
O
HOH
1_555
138.7
A
GLU
188
A
OE2
GLU
134
1_555
A
K
203
B
G
K
K
1_555
A
HOH
303
U
O
HOH
1_555
126.2
A
ASP
132
A
OD2
ASP
78
1_555
A
K
203
B
G
K
K
1_555
B
HOH
107
V
O
HOH
1_555
137.7
A
GLU
188
A
OE2
GLU
134
1_555
A
K
203
B
G
K
K
1_555
B
HOH
107
V
O
HOH
1_555
109.4
A
HOH
303
U
O
HOH
1_555
A
K
203
B
G
K
K
1_555
B
HOH
107
V
O
HOH
1_555
66.9
A
ASP
132
A
OD2
ASP
78
1_555
A
K
203
B
G
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
93.1
A
GLU
188
A
OE2
GLU
134
1_555
A
K
203
B
G
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
98.4
A
HOH
303
U
O
HOH
1_555
A
K
203
B
G
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
57.0
B
HOH
107
V
O
HOH
1_555
A
K
203
B
G
K
K
1_555
b
C
5
B
C
OP2
C
1
1_555
123.5
A
ASP
132
A
OD2
ASP
78
1_555
A
K
203
B
G
K
K
1_555
b
HOH
302
W
O
HOH
1_555
47.3
A
GLU
188
A
OE2
GLU
134
1_555
A
K
203
B
G
K
K
1_555
b
HOH
302
W
O
HOH
1_555
48.7
A
HOH
303
U
O
HOH
1_555
A
K
203
B
G
K
K
1_555
b
HOH
302
W
O
HOH
1_555
125.9
B
HOH
107
V
O
HOH
1_555
A
K
203
B
G
K
K
1_555
b
HOH
302
W
O
HOH
1_555
157.9
b
C
5
B
C
OP2
C
1
1_555
A
K
203
B
G
K
K
1_555
b
HOH
302
W
O
HOH
1_555
70.0
A
ASP
192
A
OD1
ASP
138
1_555
A
K
202
C
F
K
K
1_555
A
ASP
192
A
OD2
ASP
138
1_555
38.8
A
ASP
192
A
OD1
ASP
138
1_555
A
K
202
C
F
K
K
1_555
A
HOH
304
C
U
O
HOH
1_555
49.8
A
ASP
192
A
OD2
ASP
138
1_555
A
K
202
C
F
K
K
1_555
A
HOH
304
C
U
O
HOH
1_555
76.8
A
ASP
192
A
OD1
ASP
138
1_555
A
K
202
C
F
K
K
1_555
A
HOH
340
U
O
HOH
1_555
74.7
A
ASP
192
A
OD2
ASP
138
1_555
A
K
202
C
F
K
K
1_555
A
HOH
340
U
O
HOH
1_555
50.6
A
HOH
304
C
U
O
HOH
1_555
A
K
202
C
F
K
K
1_555
A
HOH
340
U
O
HOH
1_555
73.0
A
ASP
192
A
OD1
ASP
138
1_555
A
K
202
C
F
K
K
1_555
b
G
6
C
OP2
G
2
1_555
105.2
A
ASP
192
A
OD2
ASP
138
1_555
A
K
202
C
F
K
K
1_555
b
G
6
C
OP2
G
2
1_555
143.7
A
HOH
304
C
U
O
HOH
1_555
A
K
202
C
F
K
K
1_555
b
G
6
C
OP2
G
2
1_555
71.9
A
HOH
340
U
O
HOH
1_555
A
K
202
C
F
K
K
1_555
b
G
6
C
OP2
G
2
1_555
131.7
A
ASP
192
A
OD1
ASP
138
1_555
A
K
202
C
F
K
K
1_555
b
HOH
301
W
O
HOH
1_555
56.7
A
ASP
192
A
OD2
ASP
138
1_555
A
K
202
C
F
K
K
1_555
b
HOH
301
W
O
HOH
1_555
93.8
A
HOH
304
C
U
O
HOH
1_555
A
K
202
C
F
K
K
1_555
b
HOH
301
W
O
HOH
1_555
57.9
A
HOH
340
U
O
HOH
1_555
A
K
202
C
F
K
K
1_555
b
HOH
301
W
O
HOH
1_555
125.6
b
G
6
C
OP2
G
2
1_555
A
K
202
C
F
K
K
1_555
b
HOH
301
W
O
HOH
1_555
53.8
A
HOH
413
U
O
HOH
4_555
C
K
101
A
S
K
K
1_555
C
DT
4
D
O4
DT
4
1_555
160.5
A
HOH
413
U
O
HOH
4_555
C
K
101
A
S
K
K
1_555
C
DG
5
D
O6
DG
5
1_555
88.2
C
DT
4
D
O4
DT
4
1_555
C
K
101
A
S
K
K
1_555
C
DG
5
D
O6
DG
5
1_555
75.5
A
HOH
413
U
O
HOH
4_555
C
K
101
A
S
K
K
1_555
C
HOH
212
X
O
HOH
1_555
100.5
C
DT
4
D
O4
DT
4
1_555
C
K
101
A
S
K
K
1_555
C
HOH
212
X
O
HOH
1_555
88.0
C
DG
5
D
O6
DG
5
1_555
C
K
101
A
S
K
K
1_555
C
HOH
212
X
O
HOH
1_555
82.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
100
A
O
ILE
46
A
N
VAL
81
A
N
VAL
27
A
O
VAL
86
A
O
VAL
32
A
N
SER
69
A
N
SER
15
A
N
LEU
68
A
N
LEU
14
A
O
TYR
130
A
O
TYR
76
A
N
ILE
129
A
N
ILE
75
A
O
LEU
179
A
O
LEU
125
1
B
O2'
A
1
B
O2'
A
1
1
Y
1
b
O2'
G
6
C
O2'
G
2
1
Y
1
A
GLY
55
A
GLY
1
1
Y
1
A
SER
56
A
SER
2
1
Y
1
A
HIS
57
A
HIS
3
1
Y
1
A
MET
58
A
MET
4
1
Y
1
A
ALA
59
A
ALA
5
1
Y
1
A
LYS
60
A
LYS
6
1
Y
1
A
A
OE1
HH12
GLU
ARG
82
195
1.55
1
10.64
1.20
110.70
121.34
B
B
B
O5'
P
OP1
U
U
U
4
4
4
B
N
1
-7.45
0.90
105.70
98.25
B
B
B
O5'
P
OP2
U
U
U
4
4
4
B
N
1
2.00
0.30
108.30
110.30
C
C
C
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
b
b
P
OP3
C
C
5
5
-0.136
0.012
1.607
1.471
B
B
N
1
A
A
HE2
OE2
HIS
GLU
115
167
1.59
1_555
4_546
1
A
A
O
O
HOH
HOH
407
407
1.84
1_555
2_656
126.110
30.3493
12.660
Structures refined in Phenix and nucleic acid and protein residues built in Coot
0.1768
0.1489
0.1503
1.4220
19.8470
1726
35107
4.9200
98.9000
0.1500
1
THROUGHOUT
1.350
18.6500
0.9000
1.1100
pdbid 1ZBL
1.4220
19.8470
178
1585
57.97
42.92
53
244
1110
148
0.008
1519
1.136
2083
0.075
231
0.007
213
23.532
606
0.3234
0.0000
0.3036
1.4634
131
2520
2651
12
91.0000
0.2683
0.0000
0.2595
1.5106
146
2813
2959
12
100.0000
0.2462
0.0000
0.2216
1.5645
142
2773
2915
12
100.0000
0.2032
0.0000
0.1891
1.6272
147
2799
2946
12
100.0000
0.2157
0.0000
0.1773
1.7012
157
2768
2925
12
100.0000
0.2004
0.0000
0.1565
1.7908
128
2822
2950
12
100.0000
0.1612
0.0000
0.1532
1.9029
148
2800
2948
12
100.0000
0.1874
0.0000
0.1454
2.0497
162
2799
2961
12
100.0000
0.1767
0.0000
0.1386
2.2557
140
2809
2949
12
100.0000
0.1572
0.0000
0.1442
2.5815
144
2815
2959
12
100.0000
0.1726
0.0000
0.1431
3.2501
129
2830
2959
12
99.0000
0.1563
0.0000
0.1267
19.8485
152
2833
2985
12
97.0000
18.340
1.420
19.850
6DOQ
35113
1
6.200
35113
1.000
99.000
1.420
1.450
1486
1
1.000
85.100
7.790
19.850
208
1
1.000
87.900
data scaling
Aimless
0.5.31
refinement
PHENIX
1.10_2155
data extraction
PDB_EXTRACT
3.24
data reduction
HKL-2000
phasing
PHENIX
N
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C (dataset 2)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
8
N
N
9
N
N
5
N
N
6
N
N
10
N
N
11
N
N
11
N
N
11
N
N
11
N
N
A
THR
104
A
THR
50
HELX_P
A
ARG
123
A
ARG
69
1
AA1
20
A
SER
133
A
SER
79
HELX_P
A
LYS
143
A
LYS
89
1
AA2
11
A
THR
155
A
THR
101
HELX_P
A
ASN
170
A
ASN
116
1
AA3
16
A
GLN
182
A
GLN
128
HELX_P
A
GLY
187
A
GLY
133
1
AA4
6
covale
1.410
both
A
C
sing
B
U
4
B
O3'
U
4
1_555
b
C
5
C
P
C
1
1_555
covale
1.584
both
C
C
sing
B
U
4
B
O3'
U
4
1_555
b
C
5
C
P
C
1
1_555
metalc
2.057
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
metalc
2.054
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
214
R
MG
MG
1_555
metalc
2.241
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
201
E
MG
MG
1_555
metalc
2.342
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
metalc
2.896
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
201
E
MG
MG
1_555
metalc
3.296
B
A
ASP
132
A
OD2
ASP
78
1_555
A
K
203
G
K
K
1_555
metalc
3.397
B
A
GLU
188
A
OE2
GLU
134
1_555
A
K
203
G
K
K
1_555
metalc
2.901
C
A
ASP
192
A
OD1
ASP
138
1_555
A
K
202
F
K
K
1_555
metalc
3.496
C
A
ASP
192
A
OD2
ASP
138
1_555
A
K
202
F
K
K
1_555
metalc
1.976
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
214
R
MG
MG
1_555
metalc
2.753
A
A
MG
201
E
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
metalc
2.614
C
A
MG
201
E
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
metalc
2.746
A
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.210
B
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.214
C
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.649
C
C
A
K
202
F
K
K
1_555
A
HOH
304
U
O
HOH
1_555
metalc
2.601
C
A
K
202
F
K
K
1_555
A
HOH
340
U
O
HOH
1_555
metalc
2.920
C
A
K
202
F
K
K
1_555
b
G
6
C
OP2
G
2
1_555
metalc
3.202
C
A
K
202
F
K
K
1_555
b
HOH
301
W
O
HOH
1_555
metalc
3.443
B
A
K
203
G
K
K
1_555
A
HOH
303
U
O
HOH
1_555
metalc
2.605
B
A
K
203
G
K
K
1_555
B
HOH
107
V
O
HOH
1_555
metalc
2.751
B
B
A
K
203
G
K
K
1_555
b
C
5
C
OP2
C
1
1_555
metalc
3.391
B
A
K
203
G
K
K
1_555
b
HOH
302
W
O
HOH
1_555
metalc
2.039
C
A
MG
214
R
MG
MG
1_555
A
HOH
304
U
O
HOH
1_555
metalc
2.003
B
A
MG
214
R
MG
MG
1_555
b
C
5
C
OP3
C
1
1_555
metalc
1.900
A
A
MG
214
R
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.203
B
A
MG
214
R
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.197
C
A
MG
214
R
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.003
A
MG
214
R
MG
MG
1_555
b
HOH
301
W
O
HOH
1_555
metalc
2.102
A
MG
214
R
MG
MG
1_555
b
HOH
302
W
O
HOH
1_555
metalc
3.217
A
A
HOH
413
U
O
HOH
4_555
C
K
101
S
K
K
1_555
metalc
3.163
A
C
DT
4
D
O4
DT
4
1_555
C
K
101
S
K
K
1_555
metalc
2.676
A
C
DG
5
D
O6
DG
5
1_555
C
K
101
S
K
K
1_555
metalc
3.154
A
C
K
101
S
K
K
1_555
C
HOH
212
X
O
HOH
1_555
hydrog
WATSON-CRICK
B
A
1
B
N1
A
1
1_555
C
DT
6
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
A
1
B
N6
A
1
1_555
C
DT
6
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
C
2
B
N3
C
2
1_555
C
DG
5
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
C
2
B
N4
C
2
1_555
C
DG
5
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
C
2
B
O2
C
2
1_555
C
DG
5
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
A
3
B
N1
A
3
1_555
C
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
A
3
B
N6
A
3
1_555
C
DT
4
D
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
U
4
B
N3
U
4
1_555
C
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
U
4
B
O4
U
4
1_555
C
DA
3
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
b
C
5
C
N3
C
1
1_555
C
DG
2
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
b
C
5
C
N4
C
1
1_555
C
DG
2
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
b
C
5
C
O2
C
1
1_555
C
DG
2
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
b
G
6
C
N1
G
2
1_555
C
DC
1
D
N3
DC
1
1_555
hydrog
WATSON-CRICK
b
G
6
C
N2
G
2
1_555
C
DC
1
D
O2
DC
1
1_555
hydrog
WATSON-CRICK
b
G
6
C
O6
G
2
1_555
C
DC
1
D
N4
DC
1
1_555
hydrolase/dna/rna
protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE, hydrolase-dna-rna complex
A
GLU
61
A
GLU
7
1
A
GLU
62
A
GLU
8
1.24
A
ASN
77
A
ASN
23
1
A
PRO
78
A
PRO
24
-0.87
RNH1_BACHD
UNP
1
59
Q9KEI9
AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK
WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
6DOQ
PDB
2
1
6DOQ
6DOQ
PDB
3
1
6DOQ
6DOQ
PDB
4
1
6DOQ
59
196
6DOQ
59
196
Q9KEI9
A
1
5
142
1
4
6DOQ
1
4
6DOQ
B
2
1
4
5
6
6DOQ
5
6
6DOQ
b
3
1
2
1
6
6DOQ
1
6
6DOQ
C
4
1
6
1
expression tag
GLY
55
6DOQ
A
Q9KEI9
UNP
1
1
expression tag
SER
56
6DOQ
A
Q9KEI9
UNP
2
1
expression tag
HIS
57
6DOQ
A
Q9KEI9
UNP
3
1
expression tag
MET
58
6DOQ
A
Q9KEI9
UNP
4
5
anti-parallel
anti-parallel
parallel
parallel
A
VAL
93
A
VAL
39
A
GLY
103
A
GLY
49
A
GLY
79
A
GLY
25
A
ASP
87
A
ASP
33
A
LEU
68
A
LEU
14
A
GLN
75
A
GLN
21
A
ILE
129
A
ILE
75
A
SER
131
A
SER
77
A
ILE
178
A
ILE
124
A
LYS
180
A
LYS
126
binding site for residue MG A 201
A
MG
201
Software
5
binding site for residue K A 202
A
K
202
Software
8
binding site for residue K A 203
A
K
203
Software
6
binding site for residue IOD A 204
A
IOD
204
Software
1
binding site for residue IOD A 206
A
IOD
206
Software
3
binding site for residue IOD A 207
A
IOD
207
Software
2
binding site for residue GOL A 208
A
GOL
208
Software
5
binding site for residue GOL A 209
A
GOL
209
Software
5
binding site for residue GOL A 210
A
GOL
210
Software
7
binding site for residue GOL A 211
A
GOL
211
Software
4
binding site for residue GOL A 212
A
GOL
212
Software
8
binding site for residue PGE A 213
A
PGE
213
Software
7
binding site for residue MG A 214
A
MG
214
Software
6
binding site for residue K C 101
C
K
101
Software
3
binding site for residue EDO C 102
C
EDO
102
Software
5
A
ASP
71
A
ASP
17
5
1_555
A
GLU
109
A
GLU
55
5
1_555
A
ASP
132
A
ASP
78
5
1_555
B
U
4
B
U
4
5
1_555
b
C
5
C
C
1
5
1_555
A
ASP
192
A
ASP
138
8
1_555
A
GLY
194
A
GLY
140
8
1_555
A
ARG
195
A
ARG
141
8
1_555
A
LYS
196
A
LYS
142
8
1_555
A
HOH
304
U
HOH
8
1_555
A
HOH
340
U
HOH
8
1_555
b
C
5
C
C
1
8
1_555
b
G
6
C
G
2
8
1_555
A
ASP
132
A
ASP
78
6
1_555
A
GLU
188
A
GLU
134
6
1_555
A
HOH
339
U
HOH
6
1_555
B
U
4
B
U
4
6
1_555
B
HOH
107
V
HOH
6
1_555
b
C
5
C
C
1
6
1_555
A
TYR
83
A
TYR
29
1
1_555
A
ILE
64
A
ILE
10
3
1_555
A
HOH
441
U
HOH
3
1_555
A
HOH
445
U
HOH
3
1_555
A
HIS
172
A
HIS
118
2
1_555
A
HOH
409
U
HOH
2
4_556
A
VAL
150
A
VAL
96
5
1_555
A
ASN
152
A
ASN
98
5
1_555
A
GLU
154
A
GLU
100
5
1_555
A
HOH
312
U
HOH
5
1_555
C
HOH
209
X
HOH
5
1_555
A
ASN
77
A
ASN
23
5
1_555
A
PRO
78
A
PRO
24
5
1_555
A
HOH
376
U
HOH
5
1_555
B
HOH
105
V
HOH
5
4_545
C
DG
2
D
DG
2
5
1_555
A
GLU
66
A
GLU
12
7
2_656
A
LEU
94
A
LEU
40
7
1_555
A
ARG
123
A
ARG
69
7
1_555
A
SER
125
A
SER
71
7
1_555
A
LYS
127
A
LYS
73
7
1_555
A
HOH
305
U
HOH
7
2_656
A
HOH
343
U
HOH
7
1_555
A
LYS
143
A
LYS
89
4
1_555
A
THR
173
A
THR
119
4
1_555
A
TYR
174
A
TYR
120
4
1_555
A
HOH
306
U
HOH
4
1_555
A
HIS
115
A
HIS
61
8
1_555
A
TYR
119
A
TYR
65
8
1_555
A
GLU
122
A
GLU
68
8
1_555
A
ARG
123
A
ARG
69
8
1_555
A
GLU
167
A
GLU
113
8
4_546
A
ASN
170
A
ASN
116
8
4_546
A
HOH
325
U
HOH
8
1_555
A
HOH
372
U
HOH
8
4_546
A
LYS
180
A
LYS
126
7
1_555
A
GLN
182
A
GLN
128
7
1_555
A
THR
183
A
THR
129
7
1_555
A
ASP
184
A
ASP
130
7
1_555
A
HOH
315
U
HOH
7
1_555
B
A
3
B
A
3
7
1_555
B
U
4
B
U
4
7
1_555
A
ASP
71
A
ASP
17
6
1_555
A
ASP
192
A
ASP
138
6
1_555
A
HOH
304
U
HOH
6
1_555
b
C
5
C
C
1
6
1_555
b
HOH
301
W
HOH
6
1_555
b
HOH
302
W
HOH
6
1_555
C
DT
4
D
DT
4
3
1_555
C
DG
5
D
DG
5
3
1_555
C
HOH
214
X
HOH
3
1_555
A
THR
148
A
THR
94
5
1_555
C
DT
4
D
DT
4
5
1_555
C
DG
5
D
DG
5
5
1_555
C
DT
6
D
DT
6
5
1_555
C
HOH
201
X
HOH
5
1_555
5
C 1 2 1