0.012230
0.000000
0.001387
0.000000
0.026717
0.000000
0.000000
0.000000
0.016288
0.000000
0.000000
0.000000
Samara, N.L.
Yang, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
96.470
90.000
81.764
37.429
61.787
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
N
C
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
N
163
N
N
Y
164
N
N
Y
165
N
C
Y
166
N
N
Y
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
N
194
N
N
N
195
N
C
N
196
N
O
N
197
N
N
N
198
N
C
N
199
N
N
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
O
N
217
N
P
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
C
N
222
R
C
N
223
N
O
N
224
S
C
N
225
N
O
N
226
N
C
N
227
R
C
Y
228
N
N
Y
229
N
C
Y
230
N
N
Y
231
N
C
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
N
N
237
N
N
Y
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
O
N
254
N
P
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
C
N
259
R
C
N
260
N
O
N
261
S
C
N
262
N
O
N
263
N
C
N
264
R
C
N
265
N
N
N
266
N
C
N
267
N
O
N
268
N
N
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
O
N
300
N
P
N
301
N
O
N
302
N
O
N
303
N
O
N
304
N
C
N
305
R
C
N
306
N
O
N
307
S
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
R
C
Y
312
N
N
Y
313
N
C
Y
314
N
N
Y
315
N
C
N
316
N
C
N
317
N
O
N
318
N
N
N
319
N
C
N
320
N
N
N
321
N
N
Y
322
N
C
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
N
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
N
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
S
C
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
I
N
447
N
K
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
C
N
478
N
N
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
N
C
N
500
N
C
N
501
N
S
N
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
MG
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
C
Y
526
N
C
N
527
N
O
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
N
N
540
S
C
N
541
N
C
N
542
N
O
N
543
N
C
N
544
N
C
N
545
N
C
N
546
N
O
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
N
N
557
S
C
N
558
N
C
N
559
N
O
N
560
N
C
N
561
N
O
N
562
N
O
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
N
N
571
S
C
N
572
N
C
N
573
N
O
N
574
R
C
N
575
N
O
N
576
N
C
N
577
N
O
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
N
N
588
S
C
N
589
N
C
N
590
N
O
N
591
N
C
Y
592
N
C
Y
593
N
C
Y
594
N
C
Y
595
N
N
Y
596
N
C
Y
597
N
C
Y
598
N
C
Y
599
N
C
Y
600
N
C
N
601
N
O
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
N
N
615
S
C
N
616
N
C
N
617
N
O
N
618
N
C
Y
619
N
C
Y
620
N
C
Y
621
N
C
Y
622
N
C
Y
623
N
C
Y
624
N
C
N
625
N
O
N
626
N
O
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
O
N
639
N
P
N
640
N
O
N
641
N
O
N
642
N
O
N
643
N
C
N
644
R
C
N
645
N
O
N
646
S
C
N
647
N
O
N
648
R
C
N
649
N
O
N
650
R
C
N
651
N
N
N
652
N
C
N
653
N
O
N
654
N
N
N
655
N
C
N
656
N
O
N
657
N
C
N
658
N
C
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
H
N
663
N
H
N
664
N
H
N
665
N
H
N
666
N
H
N
667
N
H
N
668
N
H
N
669
N
H
N
670
N
H
N
671
N
H
N
672
N
N
N
673
S
C
N
674
N
C
N
675
N
O
N
676
N
C
N
677
N
C
N
678
N
C
N
679
N
O
N
680
N
H
N
681
N
H
N
682
N
H
N
683
N
H
N
684
N
H
N
685
N
H
N
686
N
H
N
687
N
H
N
688
N
H
N
689
N
H
N
690
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
Y
173
N
sing
Y
174
N
doub
N
175
N
sing
Y
176
N
doub
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
N
181
N
sing
Y
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
sing
Y
242
N
sing
Y
243
N
doub
N
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
doub
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
sing
Y
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
sing
Y
414
N
doub
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
doub
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
Y
521
N
doub
Y
522
N
sing
Y
523
N
sing
N
524
N
sing
Y
525
N
doub
N
526
N
sing
Y
527
N
doub
N
528
N
sing
Y
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
doub
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
doub
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
doub
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
doub
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
Y
590
N
doub
Y
591
N
sing
Y
592
N
sing
N
593
N
sing
Y
594
N
doub
Y
595
N
sing
Y
596
N
sing
N
597
N
sing
Y
598
N
sing
Y
599
N
doub
N
600
N
sing
Y
601
N
doub
N
602
N
sing
Y
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
doub
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
Y
618
N
doub
Y
619
N
sing
Y
620
N
sing
N
621
N
sing
Y
622
N
doub
N
623
N
sing
Y
624
N
doub
N
625
N
sing
Y
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
doub
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
doub
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
doub
N
662
N
sing
N
663
N
doub
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
N
671
N
sing
N
672
N
doub
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
N
681
N
sing
N
682
N
sing
N
683
N
sing
US
Nat. Struct. Mol. Biol.
1545-9985
25
715
721
10.1038/s41594-018-0099-4
30076410
Cation trafficking propels RNA hydrolysis.
2018
0000-0002-3591-2195
10.2210/pdb6dp1/pdb
pdb_00006dp1
100
1
CCD
2017-06-23
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
22-BM
APS
1
SYNCHROTRON
APS BEAMLINE 22-BM
16330.462
Ribonuclease H
3.1.26.4
Catalytic Domain residues 59-196
1
man
polymer
1224.802
5'-R(*AP*CP*AP*U)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3'
1
syn
polymer
605.430
5'-R(P*CP*G)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3'
1
syn
polymer
1824.228
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3')
1
syn
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
39.098
POTASSIUM ION
2
syn
non-polymer
126.904
IODIDE ION
4
syn
non-polymer
92.094
GLYCEROL
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
199
nat
water
RNase H
no
no
GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ
TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ
TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
A
polypeptide(L)
no
no
ACAU
ACAU
B
polyribonucleotide
no
no
CG
CG
b
polyribonucleotide
no
no
(DC)(DG)(DA)(DT)(DG)(DT)
CGATGT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125
sample
1
142
rnhA, BH0863
272558
Bacillus halodurans
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
Biological sequence
pET15b
1
2.44
49.49
0.000
VAPOR DIFFUSION, HANGING DROP
14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2
294
-3.858
1
20
B
1
C
6
-0.126
B_A1:DT6_C
1
-6.800
0.121
0.000
-0.168
1.715
1
19
B
2
C
5
2.416
B_C2:DG5_C
2
-12.578
0.067
0.122
-0.178
-6.652
1
20
B
3
C
4
1.660
B_A3:DT4_C
3
-11.469
0.077
-0.245
-0.142
-7.307
1
20
B
4
C
3
0.732
B_U4:DA3_C
4
-8.080
-0.029
-0.024
-0.135
-9.975
1
19
b
5
C
2
1.705
b_C5:DG2_C
5
-6.311
0.036
0.213
-0.179
-3.249
1
19
b
6
C
1
-1.227
b_G6:DC1_C
6
-8.081
-0.278
0.107
-0.177
3.084
35.556
B
B
1
2
5.902
C
C
6
5
3.240
3.597
0.687
-1.078
BB_A1C2:DG5DT6_CC
1
-1.695
2.782
35.340
-2.274
-1.365
2.458
29.106
B
B
2
3
25.098
C
C
5
4
3.445
12.203
-0.380
-1.470
BB_C2A3:DT4DG5_CC
2
3.669
-7.545
26.223
-5.468
1.521
3.254
25.298
B
B
3
4
5.447
C
C
4
3
3.388
2.378
0.963
-2.166
BB_A3U4:DA3DT4_CC
3
2.629
-6.022
25.052
-5.651
-1.420
3.111
34.500
B
b
4
5
6.134
C
C
3
2
3.299
3.630
0.198
-1.733
Bb_U4C5:DG2DA3_CC
4
1.574
-2.660
34.279
-3.475
-0.093
2.515
23.262
b
b
5
6
18.330
C
C
2
1
3.140
7.216
1.031
-2.010
bb_C5G6:DC1DG2_CC
5
4.868
-12.365
21.594
-7.213
-1.054
citation
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
repository
Initial release
Data collection
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2018-08-15
1
1
2018-08-22
1
2
2023-10-11
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
N
RCSB
Y
RCSB
2018-06-09
REL
REL
The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal.
Cleavage of RNA by B. Halodurans Ribonuclease H1
undefined
1
A
O
HOH
464
6.40
1
A
O
HOH
465
6.61
1
A
O
HOH
466
6.63
1
A
O
HOH
467
7.37
K
K
SUBJECT OF INVESTIGATION
MG
MG
SUBJECT OF INVESTIGATION
MG
MAGNESIUM ION
K
POTASSIUM ION
IOD
IODIDE ION
GOL
GLYCEROL
EDO
1,2-ETHANEDIOL
HOH
water
32630
synthetic construct
sample
1
4
32630
synthetic construct
sample
1
2
32630
synthetic construct
sample
1
6
1ZBL
PDB
experimental model
MG
201
5
MG
MG
201
A
MG
202
5
MG
MG
202
A
K
211
6
K
K
203
A
IOD
1
7
IOD
IOD
204
A
IOD
2
7
IOD
IOD
205
A
IOD
3
7
IOD
IOD
206
A
IOD
4
7
IOD
IOD
207
A
GOL
1
8
GOL
GOL
208
A
GOL
2
8
GOL
GOL
209
A
GOL
3
8
GOL
GOL
210
A
EDO
5
9
EDO
EDO
211
A
GOL
7
8
GOL
GOL
212
A
EDO
1
9
EDO
EDO
213
A
K
213
6
K
K
101
C
HOH
5
10
HOH
HOH
301
A
HOH
208
10
HOH
HOH
302
A
HOH
193
10
HOH
HOH
303
A
HOH
163
10
HOH
HOH
304
A
HOH
16
10
HOH
HOH
305
A
HOH
83
10
HOH
HOH
306
A
HOH
202
10
HOH
HOH
307
A
HOH
154
10
HOH
HOH
308
A
HOH
49
10
HOH
HOH
309
A
HOH
138
10
HOH
HOH
310
A
HOH
187
10
HOH
HOH
311
A
HOH
174
10
HOH
HOH
312
A
HOH
60
10
HOH
HOH
313
A
HOH
62
10
HOH
HOH
314
A
HOH
207
10
HOH
HOH
315
A
HOH
17
10
HOH
HOH
316
A
HOH
117
10
HOH
HOH
317
A
HOH
88
10
HOH
HOH
318
A
HOH
212
10
HOH
HOH
319
A
HOH
167
10
HOH
HOH
320
A
HOH
130
10
HOH
HOH
321
A
HOH
36
10
HOH
HOH
322
A
HOH
70
10
HOH
HOH
323
A
HOH
194
10
HOH
HOH
324
A
HOH
215
10
HOH
HOH
325
A
HOH
161
10
HOH
HOH
326
A
HOH
53
10
HOH
HOH
327
A
HOH
143
10
HOH
HOH
328
A
HOH
97
10
HOH
HOH
329
A
HOH
20
10
HOH
HOH
330
A
HOH
157
10
HOH
HOH
331
A
HOH
156
10
HOH
HOH
332
A
HOH
32
10
HOH
HOH
333
A
HOH
192
10
HOH
HOH
334
A
HOH
198
10
HOH
HOH
335
A
HOH
46
10
HOH
HOH
336
A
HOH
21
10
HOH
HOH
337
A
HOH
132
10
HOH
HOH
338
A
HOH
84
10
HOH
HOH
339
A
HOH
14
10
HOH
HOH
340
A
HOH
126
10
HOH
HOH
341
A
HOH
118
10
HOH
HOH
342
A
HOH
141
10
HOH
HOH
343
A
HOH
56
10
HOH
HOH
344
A
HOH
105
10
HOH
HOH
345
A
HOH
85
10
HOH
HOH
346
A
HOH
57
10
HOH
HOH
347
A
HOH
2
10
HOH
HOH
348
A
HOH
34
10
HOH
HOH
349
A
HOH
22
10
HOH
HOH
350
A
HOH
120
10
HOH
HOH
351
A
HOH
203
10
HOH
HOH
352
A
HOH
9
10
HOH
HOH
353
A
HOH
213
10
HOH
HOH
354
A
HOH
81
10
HOH
HOH
355
A
HOH
145
10
HOH
HOH
356
A
HOH
172
10
HOH
HOH
357
A
HOH
122
10
HOH
HOH
358
A
HOH
160
10
HOH
HOH
359
A
HOH
153
10
HOH
HOH
360
A
HOH
45
10
HOH
HOH
361
A
HOH
35
10
HOH
HOH
362
A
HOH
42
10
HOH
HOH
363
A
HOH
28
10
HOH
HOH
364
A
HOH
64
10
HOH
HOH
365
A
HOH
6
10
HOH
HOH
366
A
HOH
166
10
HOH
HOH
367
A
HOH
169
10
HOH
HOH
368
A
HOH
135
10
HOH
HOH
369
A
HOH
47
10
HOH
HOH
370
A
HOH
129
10
HOH
HOH
371
A
HOH
71
10
HOH
HOH
372
A
HOH
8
10
HOH
HOH
373
A
HOH
168
10
HOH
HOH
374
A
HOH
86
10
HOH
HOH
375
A
HOH
76
10
HOH
HOH
376
A
HOH
186
10
HOH
HOH
377
A
HOH
119
10
HOH
HOH
378
A
HOH
54
10
HOH
HOH
379
A
HOH
44
10
HOH
HOH
380
A
HOH
69
10
HOH
HOH
381
A
HOH
77
10
HOH
HOH
382
A
HOH
211
10
HOH
HOH
383
A
HOH
50
10
HOH
HOH
384
A
HOH
26
10
HOH
HOH
385
A
HOH
188
10
HOH
HOH
386
A
HOH
201
10
HOH
HOH
387
A
HOH
4
10
HOH
HOH
388
A
HOH
1
10
HOH
HOH
389
A
HOH
195
10
HOH
HOH
390
A
HOH
206
10
HOH
HOH
391
A
HOH
162
10
HOH
HOH
392
A
HOH
106
10
HOH
HOH
393
A
HOH
93
10
HOH
HOH
394
A
HOH
182
10
HOH
HOH
395
A
HOH
199
10
HOH
HOH
396
A
HOH
155
10
HOH
HOH
397
A
HOH
180
10
HOH
HOH
398
A
HOH
128
10
HOH
HOH
399
A
HOH
95
10
HOH
HOH
400
A
HOH
158
10
HOH
HOH
401
A
HOH
91
10
HOH
HOH
402
A
HOH
108
10
HOH
HOH
403
A
HOH
104
10
HOH
HOH
404
A
HOH
23
10
HOH
HOH
405
A
HOH
59
10
HOH
HOH
406
A
HOH
51
10
HOH
HOH
407
A
HOH
18
10
HOH
HOH
408
A
HOH
139
10
HOH
HOH
409
A
HOH
214
10
HOH
HOH
410
A
HOH
204
10
HOH
HOH
411
A
HOH
55
10
HOH
HOH
412
A
HOH
124
10
HOH
HOH
413
A
HOH
112
10
HOH
HOH
414
A
HOH
52
10
HOH
HOH
415
A
HOH
181
10
HOH
HOH
416
A
HOH
205
10
HOH
HOH
417
A
HOH
72
10
HOH
HOH
418
A
HOH
171
10
HOH
HOH
419
A
HOH
146
10
HOH
HOH
420
A
HOH
127
10
HOH
HOH
421
A
HOH
13
10
HOH
HOH
422
A
HOH
200
10
HOH
HOH
423
A
HOH
151
10
HOH
HOH
424
A
HOH
159
10
HOH
HOH
425
A
HOH
66
10
HOH
HOH
426
A
HOH
7
10
HOH
HOH
427
A
HOH
131
10
HOH
HOH
428
A
HOH
189
10
HOH
HOH
429
A
HOH
185
10
HOH
HOH
430
A
HOH
89
10
HOH
HOH
431
A
HOH
197
10
HOH
HOH
432
A
HOH
176
10
HOH
HOH
433
A
HOH
148
10
HOH
HOH
434
A
HOH
165
10
HOH
HOH
435
A
HOH
90
10
HOH
HOH
436
A
HOH
68
10
HOH
HOH
437
A
HOH
134
10
HOH
HOH
438
A
HOH
136
10
HOH
HOH
439
A
HOH
73
10
HOH
HOH
440
A
HOH
101
10
HOH
HOH
441
A
HOH
218
10
HOH
HOH
442
A
HOH
102
10
HOH
HOH
443
A
HOH
12
10
HOH
HOH
444
A
HOH
75
10
HOH
HOH
445
A
HOH
98
10
HOH
HOH
446
A
HOH
125
10
HOH
HOH
447
A
HOH
190
10
HOH
HOH
448
A
HOH
27
10
HOH
HOH
449
A
HOH
39
10
HOH
HOH
450
A
HOH
123
10
HOH
HOH
451
A
HOH
29
10
HOH
HOH
452
A
HOH
74
10
HOH
HOH
453
A
HOH
40
10
HOH
HOH
454
A
HOH
100
10
HOH
HOH
455
A
HOH
31
10
HOH
HOH
456
A
HOH
144
10
HOH
HOH
457
A
HOH
179
10
HOH
HOH
458
A
HOH
82
10
HOH
HOH
459
A
HOH
61
10
HOH
HOH
460
A
HOH
209
10
HOH
HOH
461
A
HOH
217
10
HOH
HOH
462
A
HOH
216
10
HOH
HOH
463
A
HOH
99
10
HOH
HOH
464
A
HOH
210
10
HOH
HOH
465
A
HOH
140
10
HOH
HOH
466
A
HOH
43
10
HOH
HOH
467
A
HOH
109
10
HOH
HOH
101
B
HOH
15
10
HOH
HOH
102
B
HOH
147
10
HOH
HOH
103
B
HOH
79
10
HOH
HOH
104
B
HOH
133
10
HOH
HOH
105
B
HOH
67
10
HOH
HOH
106
B
HOH
150
10
HOH
HOH
107
B
HOH
80
10
HOH
HOH
108
B
HOH
38
10
HOH
HOH
109
B
HOH
111
10
HOH
HOH
101
b
HOH
149
10
HOH
HOH
102
b
HOH
96
10
HOH
HOH
103
b
HOH
115
10
HOH
HOH
104
b
HOH
184
10
HOH
HOH
105
b
HOH
183
10
HOH
HOH
106
b
HOH
11
10
HOH
HOH
201
C
HOH
110
10
HOH
HOH
202
C
HOH
113
10
HOH
HOH
203
C
HOH
10
10
HOH
HOH
204
C
HOH
30
10
HOH
HOH
205
C
HOH
19
10
HOH
HOH
206
C
HOH
58
10
HOH
HOH
207
C
HOH
107
10
HOH
HOH
208
C
HOH
196
10
HOH
HOH
209
C
HOH
191
10
HOH
HOH
210
C
HOH
33
10
HOH
HOH
211
C
HOH
114
10
HOH
HOH
212
C
HOH
142
10
HOH
HOH
213
C
HOH
78
10
HOH
HOH
214
C
HOH
65
10
HOH
HOH
215
C
HOH
116
10
HOH
HOH
216
C
HOH
94
10
HOH
HOH
217
C
n
1
55
A
n
2
56
A
n
3
57
A
n
4
58
A
n
5
59
A
n
6
60
A
GLU
61
n
7
GLU
61
A
GLU
62
n
8
GLU
62
A
ILE
63
n
9
ILE
63
A
ILE
64
n
10
ILE
64
A
TRP
65
n
11
TRP
65
A
GLU
66
n
12
GLU
66
A
SER
67
n
13
SER
67
A
LEU
68
n
14
LEU
68
A
SER
69
n
15
SER
69
A
VAL
70
n
16
VAL
70
A
ASP
71
n
17
ASP
71
A
VAL
72
n
18
VAL
72
A
GLY
73
n
19
GLY
73
A
SER
74
n
20
SER
74
A
GLN
75
n
21
GLN
75
A
GLY
76
n
22
GLY
76
A
ASN
77
n
23
ASN
77
A
PRO
78
n
24
PRO
78
A
GLY
79
n
25
GLY
79
A
ILE
80
n
26
ILE
80
A
VAL
81
n
27
VAL
81
A
GLU
82
n
28
GLU
82
A
TYR
83
n
29
TYR
83
A
LYS
84
n
30
LYS
84
A
GLY
85
n
31
GLY
85
A
VAL
86
n
32
VAL
86
A
ASP
87
n
33
ASP
87
A
THR
88
n
34
THR
88
A
LYS
89
n
35
LYS
89
A
THR
90
n
36
THR
90
A
GLY
91
n
37
GLY
91
A
GLU
92
n
38
GLU
92
A
VAL
93
n
39
VAL
93
A
LEU
94
n
40
LEU
94
A
PHE
95
n
41
PHE
95
A
GLU
96
n
42
GLU
96
A
ARG
97
n
43
ARG
97
A
GLU
98
n
44
GLU
98
A
PRO
99
n
45
PRO
99
A
ILE
100
n
46
ILE
100
A
PRO
101
n
47
PRO
101
A
ILE
102
n
48
ILE
102
A
GLY
103
n
49
GLY
103
A
THR
104
n
50
THR
104
A
ASN
105
n
51
ASN
105
A
ASN
106
n
52
ASN
106
A
MET
107
n
53
MET
107
A
GLY
108
n
54
GLY
108
A
GLU
109
n
55
GLU
109
A
PHE
110
n
56
PHE
110
A
LEU
111
n
57
LEU
111
A
ALA
112
n
58
ALA
112
A
ILE
113
n
59
ILE
113
A
VAL
114
n
60
VAL
114
A
HIS
115
n
61
HIS
115
A
GLY
116
n
62
GLY
116
A
LEU
117
n
63
LEU
117
A
ARG
118
n
64
ARG
118
A
TYR
119
n
65
TYR
119
A
LEU
120
n
66
LEU
120
A
LYS
121
n
67
LYS
121
A
GLU
122
n
68
GLU
122
A
ARG
123
n
69
ARG
123
A
ASN
124
n
70
ASN
124
A
SER
125
n
71
SER
125
A
ARG
126
n
72
ARG
126
A
LYS
127
n
73
LYS
127
A
PRO
128
n
74
PRO
128
A
ILE
129
n
75
ILE
129
A
TYR
130
n
76
TYR
130
A
SER
131
n
77
SER
131
A
ASP
132
n
78
ASP
132
A
SER
133
n
79
SER
133
A
GLN
134
n
80
GLN
134
A
THR
135
n
81
THR
135
A
ALA
136
n
82
ALA
136
A
ILE
137
n
83
ILE
137
A
LYS
138
n
84
LYS
138
A
TRP
139
n
85
TRP
139
A
VAL
140
n
86
VAL
140
A
LYS
141
n
87
LYS
141
A
ASP
142
n
88
ASP
142
A
LYS
143
n
89
LYS
143
A
LYS
144
n
90
LYS
144
A
ALA
145
n
91
ALA
145
A
LYS
146
n
92
LYS
146
A
SER
147
n
93
SER
147
A
THR
148
n
94
THR
148
A
LEU
149
n
95
LEU
149
A
VAL
150
n
96
VAL
150
A
ARG
151
n
97
ARG
151
A
ASN
152
n
98
ASN
152
A
GLU
153
n
99
GLU
153
A
GLU
154
n
100
GLU
154
A
THR
155
n
101
THR
155
A
ALA
156
n
102
ALA
156
A
LEU
157
n
103
LEU
157
A
ILE
158
n
104
ILE
158
A
TRP
159
n
105
TRP
159
A
LYS
160
n
106
LYS
160
A
LEU
161
n
107
LEU
161
A
VAL
162
n
108
VAL
162
A
ASP
163
n
109
ASP
163
A
GLU
164
n
110
GLU
164
A
ALA
165
n
111
ALA
165
A
GLU
166
n
112
GLU
166
A
GLU
167
n
113
GLU
167
A
TRP
168
n
114
TRP
168
A
LEU
169
n
115
LEU
169
A
ASN
170
n
116
ASN
170
A
THR
171
n
117
THR
171
A
HIS
172
n
118
HIS
172
A
THR
173
n
119
THR
173
A
TYR
174
n
120
TYR
174
A
GLU
175
n
121
GLU
175
A
THR
176
n
122
THR
176
A
PRO
177
n
123
PRO
177
A
ILE
178
n
124
ILE
178
A
LEU
179
n
125
LEU
179
A
LYS
180
n
126
LYS
180
A
TRP
181
n
127
TRP
181
A
GLN
182
n
128
GLN
182
A
THR
183
n
129
THR
183
A
ASP
184
n
130
ASP
184
A
LYS
185
n
131
LYS
185
A
TRP
186
n
132
TRP
186
A
GLY
187
n
133
GLY
187
A
GLU
188
n
134
GLU
188
A
ILE
189
n
135
ILE
189
A
LYS
190
n
136
LYS
190
A
ALA
191
n
137
ALA
191
A
ASP
192
n
138
ASP
192
A
TYR
193
n
139
TYR
193
A
GLY
194
n
140
GLY
194
A
ARG
195
n
141
ARG
195
A
n
142
196
A
A
1
n
1
A
1
B
C
2
n
2
C
2
B
A
3
n
3
A
3
B
U
4
n
4
U
4
B
C
5
n
1
C
5
b
G
6
n
2
G
6
b
DC
1
n
1
DC
1
C
DG
2
n
2
DG
2
C
DA
3
n
3
DA
3
C
DT
4
n
4
DT
4
C
DG
5
n
5
DG
5
C
DT
6
n
6
DT
6
C
3.4362
-1.3736
1.5645
2.1099
-0.5103
3.7305
0.3915
0.2592
-0.3755
-0.1696
-0.1673
-0.0224
0.4056
0.1714
-0.1318
0.1818
0.0372
0.0215
0.1279
-0.0025
0.1492
refined
25.1866
-5.8515
16.9889
X-RAY DIFFRACTION
5.7312
-1.6390
-5.0203
2.3733
0.7649
4.7038
-0.0397
-0.4040
-1.1858
0.0036
0.1586
-0.3187
0.7304
0.3931
0.0647
0.2627
0.0564
0.0037
0.2133
0.0232
0.3728
refined
28.1766
-11.5416
23.8057
X-RAY DIFFRACTION
4.0838
-0.0889
2.7529
0.6718
0.3070
4.5648
0.0616
-0.2667
-0.0693
-0.0486
-0.0520
0.0278
0.0416
-0.2986
-0.0240
0.1222
0.0165
0.0284
0.0942
0.0079
0.1324
refined
22.0683
-0.9624
23.1876
X-RAY DIFFRACTION
4.7909
-4.8861
-0.0919
8.2429
0.6367
6.9021
0.1771
0.1122
0.5457
-0.0235
-0.1965
-0.5214
-1.0121
0.1747
-0.0564
0.3025
-0.0072
0.0409
0.1127
0.0368
0.2067
refined
24.0051
9.3864
16.5013
X-RAY DIFFRACTION
7.1335
0.5425
2.5710
3.5349
0.2528
3.3814
0.6484
-0.2039
0.3957
-0.1834
-0.7914
0.5068
-0.9995
-1.2020
0.1452
0.3033
0.4191
-0.0084
0.5267
-0.1375
0.2294
refined
8.7704
7.6060
16.0554
X-RAY DIFFRACTION
8.9949
1.1078
6.8684
2.0358
2.1745
8.0147
0.1987
-0.3545
0.0081
0.0052
-0.2896
0.1187
-0.3516
-0.8384
0.1377
0.2089
0.0950
0.0371
0.2745
-0.0312
0.1725
refined
12.4774
5.6692
24.7445
X-RAY DIFFRACTION
3.9231
-0.8444
-0.9981
2.9667
0.9217
5.6136
0.1205
0.3831
-0.0322
-0.2777
-0.0744
-0.1766
0.0800
0.2744
-0.0753
0.1485
0.0468
0.0139
0.1363
0.0425
0.1321
refined
29.1095
-0.3267
18.0787
X-RAY DIFFRACTION
4.7009
-0.4738
3.0175
5.9523
-0.6848
5.5399
0.0720
0.6045
-0.1213
-0.6322
-0.1812
-0.2205
0.1403
0.3005
0.1573
0.3328
0.0857
0.0377
0.2560
0.0014
0.1805
refined
23.8674
1.3035
4.4511
X-RAY DIFFRACTION
3.5936
-1.5946
-2.5792
4.0010
0.7609
6.8565
0.0815
0.3871
-0.1524
-0.8461
-0.3999
0.1753
-0.5074
-0.4290
0.3519
0.3772
0.1071
-0.0077
0.2113
-0.0008
0.1658
refined
16.4854
3.7523
3.1215
X-RAY DIFFRACTION
X-RAY DIFFRACTION
A
61
A
87
X-RAY DIFFRACTION
1
chain 'A' and (resid 61 through 87 )
A
88
A
96
X-RAY DIFFRACTION
2
chain 'A' and (resid 88 through 96 )
A
97
A
133
X-RAY DIFFRACTION
3
chain 'A' and (resid 97 through 133 )
A
134
A
142
X-RAY DIFFRACTION
4
chain 'A' and (resid 134 through 142 )
A
143
A
155
X-RAY DIFFRACTION
5
chain 'A' and (resid 143 through 155 )
A
156
A
169
X-RAY DIFFRACTION
6
chain 'A' and (resid 156 through 169 )
A
170
A
196
X-RAY DIFFRACTION
7
chain 'A' and (resid 170 through 196 )
B
1
B
4
X-RAY DIFFRACTION
8
(chain 'B' and (resid 1 through 4 )) OR (chain 'b' and (resid 5 through 6 ))
C
1
C
6
X-RAY DIFFRACTION
9
chain 'C' and (resid 1 through 6 )
b
5
b
6
X-RAY DIFFRACTION
8
(chain 'B' and (resid 1 through 4 )) OR (chain 'b' and (resid 5 through 6 ))
author_and_software_defined_assembly
PISA
4
tetrameric
none
5170
-39
8040
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
ASP
192
A
OD1
ASP
138
1_555
97.9
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
318
S
O
HOH
1_555
172.7
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
318
S
O
HOH
1_555
75.5
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
322
S
O
HOH
1_555
91.2
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
322
S
O
HOH
1_555
96.8
A
HOH
318
S
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
322
S
O
HOH
1_555
86.7
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
365
S
O
HOH
1_555
87.4
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
365
S
O
HOH
1_555
90.5
A
HOH
318
S
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
365
S
O
HOH
1_555
95.6
A
HOH
322
S
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
A
HOH
365
S
O
HOH
1_555
172.7
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
100.8
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
159.5
A
HOH
318
S
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
86.2
A
HOH
322
S
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
91.1
A
HOH
365
S
O
HOH
1_555
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
82.1
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
A
GLU
109
A
OE1
GLU
55
1_555
100.7
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD1
ASP
78
1_555
136.2
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD1
ASP
78
1_555
97.6
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
111.0
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
144.6
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
A
ASP
132
A
OD2
ASP
78
1_555
48.3
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
137.4
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
82.8
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
84.0
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
84.2
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
83.7
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
109.7
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
126.2
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
89.5
B
U
4
B
O3'
U
4
1_555
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
56.1
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
A
ARG
195
A
O
ARG
141
1_555
139.7
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
A
HOH
317
S
O
HOH
1_555
66.5
A
ARG
195
A
O
ARG
141
1_555
A
K
203
G
K
K
1_555
A
HOH
317
S
O
HOH
1_555
73.7
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
A
HOH
318
S
O
HOH
1_555
50.1
A
ARG
195
A
O
ARG
141
1_555
A
K
203
G
K
K
1_555
A
HOH
318
S
O
HOH
1_555
105.8
A
HOH
317
S
O
HOH
1_555
A
K
203
G
K
K
1_555
A
HOH
318
S
O
HOH
1_555
63.5
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
A
HOH
322
S
O
HOH
1_555
57.4
A
ARG
195
A
O
ARG
141
1_555
A
K
203
G
K
K
1_555
A
HOH
322
S
O
HOH
1_555
145.2
A
HOH
317
S
O
HOH
1_555
A
K
203
G
K
K
1_555
A
HOH
322
S
O
HOH
1_555
116.5
A
HOH
318
S
O
HOH
1_555
A
K
203
G
K
K
1_555
A
HOH
322
S
O
HOH
1_555
58.9
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
100.6
A
ARG
195
A
O
ARG
141
1_555
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
94.2
A
HOH
317
S
O
HOH
1_555
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
121.3
A
HOH
318
S
O
HOH
1_555
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
65.7
A
HOH
322
S
O
HOH
1_555
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
51.5
B
HOH
109
T
O
HOH
1_555
C
K
101
A
R
K
K
1_555
C
DT
4
D
O4
DT
4
1_555
158.1
B
HOH
109
T
O
HOH
1_555
C
K
101
A
R
K
K
1_555
C
DG
5
D
O6
DG
5
1_555
91.2
C
DT
4
D
O4
DT
4
1_555
C
K
101
A
R
K
K
1_555
C
DG
5
D
O6
DG
5
1_555
73.5
B
HOH
109
T
O
HOH
1_555
C
K
101
A
R
K
K
1_555
C
HOH
209
V
O
HOH
1_555
108.8
C
DT
4
D
O4
DT
4
1_555
C
K
101
A
R
K
K
1_555
C
HOH
209
V
O
HOH
1_555
84.6
C
DG
5
D
O6
DG
5
1_555
C
K
101
A
R
K
K
1_555
C
HOH
209
V
O
HOH
1_555
81.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
100
A
O
ILE
46
A
N
VAL
81
A
N
VAL
27
A
O
VAL
86
A
O
VAL
32
A
N
SER
69
A
N
SER
15
A
N
LEU
68
A
N
LEU
14
A
O
TYR
130
A
O
TYR
76
A
N
ILE
129
A
N
ILE
75
A
O
LEU
179
A
O
LEU
125
1
B
O2'
A
1
B
O2'
A
1
1
Y
1
b
O2'
G
6
C
O2'
G
2
1
Y
1
A
GLY
55
A
GLY
1
1
Y
1
A
SER
56
A
SER
2
1
Y
1
A
HIS
57
A
HIS
3
1
Y
1
A
MET
58
A
MET
4
1
Y
1
A
ALA
59
A
ALA
5
1
Y
1
A
LYS
60
A
LYS
6
1
Y
1
A
LYS
196
A
LYS
142
1
Y
1
A
A
O2
O
GOL
HOH
212
301
2.02
1
A
A
O1
O
EDO
HOH
213
302
2.07
1
A
A
OH
O
TYR
HOH
174
303
2.11
B
1
A
A
OG1
O
THR
HOH
90
304
2.15
1
A
A
OE2
O
GLU
HOH
154
305
2.18
1
C
C
O3'
C3'
DG
DG
2
2
-0.042
0.006
1.419
1.377
N
1
A
A
O
O
HOH
HOH
428
428
1.81
1_555
2_656
1
A
A
O
O
HOH
HOH
429
460
2.11
1_555
3_545
133.900
31.3492
12.040
Structures refined in Phenix and nucleic acid and protein residues built in Coot
0.1895
0.1534
0.1551
1.42
19.16
1717
34440
4.9900
96.6500
0.1500
1
THROUGHOUT
1.350
MOLECULAR REPLACEMENT
20.5800
0.9000
1.1100
1ZBL
1.42
19.16
199
1582
65.27
42.51
40
243
1100
147
0.007
1462
1.004
2022
0.071
220
0.006
212
23.387
575
0.2921
0.0000
0.3026
1.4575
117
2227
2344
12
79.0000
0.2745
0.0000
0.2608
1.5046
149
2645
2794
12
95.0000
0.2642
0.0000
0.2346
1.5583
123
2661
2784
12
95.0000
0.2812
0.0000
0.1980
1.6207
153
2697
2850
12
96.0000
0.2041
0.0000
0.1831
1.6944
150
2709
2859
12
97.0000
0.1826
0.0000
0.1700
1.7837
155
2773
2928
12
99.0000
0.2307
0.0000
0.1802
1.8953
149
2771
2920
12
99.0000
0.1798
0.0000
0.1569
2.0415
161
2816
2977
12
100.0000
0.2044
0.0000
0.1473
2.2467
141
2830
2971
12
100.0000
0.1786
0.0000
0.1487
2.5711
125
2839
2964
12
100.0000
0.1739
0.0000
0.1516
3.2368
154
2842
2996
12
100.0000
0.1709
0.0000
0.1275
19.1664
140
2913
3053
12
99.0000
19.660
1.420
19.160
6DP1
34456
1
6.500
34456
1.000
96.800
1.420
1.440
1219
1
1.000
69.200
7.760
19.160
221
1
1.000
92.600
data scaling
Aimless
0.5.31
refinement
PHENIX
1.10.1_2155
data extraction
PDB_EXTRACT
3.24
data reduction
HKL-2000
phasing
PHENIX
N
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 75 mM K+ for 40 s at 21 C
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
8
N
N
8
N
N
8
N
N
9
N
N
8
N
N
9
N
N
6
N
N
10
N
N
10
N
N
10
N
N
10
N
N
A
THR
104
A
THR
50
HELX_P
A
ARG
123
A
ARG
69
1
AA1
20
A
SER
133
A
SER
79
HELX_P
A
LYS
143
A
LYS
89
1
AA2
11
A
THR
155
A
THR
101
HELX_P
A
ASN
170
A
ASN
116
1
AA3
16
A
GLN
182
A
GLN
128
HELX_P
A
GLY
187
A
GLY
133
1
AA4
6
covale
1.591
both
sing
B
U
4
B
O3'
U
4
1_555
b
C
5
C
P
C
1
1_555
metalc
2.032
A
ASP
71
A
OD2
ASP
17
1_555
A
MG
201
E
MG
MG
1_555
metalc
2.118
A
ASP
71
A
OD1
ASP
17
1_555
A
MG
202
F
MG
MG
1_555
metalc
2.274
A
GLU
109
A
OE1
GLU
55
1_555
A
MG
202
F
MG
MG
1_555
metalc
2.328
A
ASP
132
A
OD1
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
metalc
2.868
A
ASP
132
A
OD2
ASP
78
1_555
A
MG
202
F
MG
MG
1_555
metalc
1.966
A
ASP
192
A
OD1
ASP
138
1_555
A
MG
201
E
MG
MG
1_555
metalc
3.165
A
ASP
192
A
OD1
ASP
138
1_555
A
K
203
G
K
K
1_555
metalc
3.076
A
ARG
195
A
O
ARG
141
1_555
A
K
203
G
K
K
1_555
metalc
2.197
A
MG
201
E
MG
MG
1_555
A
HOH
318
S
O
HOH
1_555
metalc
2.059
A
MG
201
E
MG
MG
1_555
A
HOH
322
S
O
HOH
1_555
metalc
2.094
A
MG
201
E
MG
MG
1_555
A
HOH
365
S
O
HOH
1_555
metalc
2.141
A
MG
201
E
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.727
A
MG
202
F
MG
MG
1_555
B
U
4
B
O3'
U
4
1_555
metalc
2.505
A
MG
202
F
MG
MG
1_555
b
C
5
C
OP1
C
1
1_555
metalc
2.844
A
K
203
G
K
K
1_555
A
HOH
317
S
O
HOH
1_555
metalc
2.820
A
K
203
G
K
K
1_555
A
HOH
318
S
O
HOH
1_555
metalc
3.107
A
K
203
G
K
K
1_555
A
HOH
322
S
O
HOH
1_555
metalc
3.101
A
K
203
G
K
K
1_555
b
G
6
C
OP2
G
2
1_555
metalc
3.064
A
B
HOH
109
T
O
HOH
1_555
C
K
101
R
K
K
1_555
metalc
3.278
A
C
DT
4
D
O4
DT
4
1_555
C
K
101
R
K
K
1_555
metalc
2.655
A
C
DG
5
D
O6
DG
5
1_555
C
K
101
R
K
K
1_555
metalc
3.298
A
C
K
101
R
K
K
1_555
C
HOH
209
V
O
HOH
1_555
hydrog
WATSON-CRICK
B
A
1
B
N1
A
1
1_555
C
DT
6
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
A
1
B
N6
A
1
1_555
C
DT
6
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
C
2
B
N3
C
2
1_555
C
DG
5
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
C
2
B
N4
C
2
1_555
C
DG
5
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
C
2
B
O2
C
2
1_555
C
DG
5
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
A
3
B
N1
A
3
1_555
C
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
A
3
B
N6
A
3
1_555
C
DT
4
D
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
U
4
B
N3
U
4
1_555
C
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
U
4
B
O4
U
4
1_555
C
DA
3
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
b
C
5
C
N3
C
1
1_555
C
DG
2
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
b
C
5
C
N4
C
1
1_555
C
DG
2
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
b
C
5
C
O2
C
1
1_555
C
DG
2
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
b
G
6
C
N1
G
2
1_555
C
DC
1
D
N3
DC
1
1_555
hydrog
WATSON-CRICK
b
G
6
C
N2
G
2
1_555
C
DC
1
D
O2
DC
1
1_555
hydrog
WATSON-CRICK
b
G
6
C
O6
G
2
1_555
C
DC
1
D
N4
DC
1
1_555
HYDROLASE/DNA/RNA
protein-RNA-DNA complex, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, HYDROLASE-DNA-RNA complex
A
ASN
77
A
ASN
23
1
A
PRO
78
A
PRO
24
1.10
RNH1_BACHD
UNP
1
59
Q9KEI9
AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK
WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
6DP1
PDB
2
1
6DP1
6DP1
PDB
3
1
6DP1
6DP1
PDB
4
1
6DP1
59
196
6DP1
59
196
Q9KEI9
A
1
5
142
1
4
6DP1
1
4
6DP1
B
2
1
4
5
6
6DP1
5
6
6DP1
b
3
1
2
1
6
6DP1
1
6
6DP1
C
4
1
6
1
expression tag
GLY
55
6DP1
A
Q9KEI9
UNP
1
1
expression tag
SER
56
6DP1
A
Q9KEI9
UNP
2
1
expression tag
HIS
57
6DP1
A
Q9KEI9
UNP
3
1
expression tag
MET
58
6DP1
A
Q9KEI9
UNP
4
5
anti-parallel
anti-parallel
parallel
parallel
A
VAL
93
A
VAL
39
A
GLY
103
A
GLY
49
A
GLY
79
A
GLY
25
A
ASP
87
A
ASP
33
A
LEU
68
A
LEU
14
A
GLN
75
A
GLN
21
A
ILE
129
A
ILE
75
A
SER
131
A
SER
77
A
ILE
178
A
ILE
124
A
LYS
180
A
LYS
126
binding site for residue MG A 201
A
MG
201
Software
6
binding site for residue MG A 202
A
MG
202
Software
5
binding site for residue K A 203
A
K
203
Software
6
binding site for residue IOD A 204
A
IOD
204
Software
1
binding site for residue IOD A 205
A
IOD
205
Software
1
binding site for residue IOD A 206
A
IOD
206
Software
3
binding site for residue IOD A 207
A
IOD
207
Software
2
binding site for residue GOL A 208
A
GOL
208
Software
6
binding site for residue GOL A 209
A
GOL
209
Software
7
binding site for residue GOL A 210
A
GOL
210
Software
5
binding site for residue EDO A 211
A
EDO
211
Software
5
binding site for residue GOL A 212
A
GOL
212
Software
6
binding site for residue EDO A 213
A
EDO
213
Software
5
binding site for residue K C 101
C
K
101
Software
4
A
ASP
71
A
ASP
17
6
1_555
A
ASP
192
A
ASP
138
6
1_555
A
HOH
318
S
HOH
6
1_555
A
HOH
322
S
HOH
6
1_555
A
HOH
365
S
HOH
6
1_555
b
C
5
C
C
1
6
1_555
A
ASP
71
A
ASP
17
5
1_555
A
GLU
109
A
GLU
55
5
1_555
A
ASP
132
A
ASP
78
5
1_555
B
U
4
B
U
4
5
1_555
b
C
5
C
C
1
5
1_555
A
ASP
192
A
ASP
138
6
1_555
A
GLY
194
A
GLY
140
6
1_555
A
ARG
195
A
ARG
141
6
1_555
A
HOH
317
S
HOH
6
1_555
A
HOH
318
S
HOH
6
1_555
b
G
6
C
G
2
6
1_555
A
TYR
83
A
TYR
29
1
1_555
A
HOH
339
S
HOH
1
1_555
A
ILE
64
A
ILE
10
3
1_555
A
HOH
459
S
HOH
3
1_555
A
HOH
464
S
HOH
3
1_555
A
HIS
172
A
HIS
118
2
1_555
A
HOH
447
S
HOH
2
1_555
A
GLY
76
A
GLY
22
6
1_555
A
ASN
77
A
ASN
23
6
1_555
A
PRO
78
A
PRO
24
6
1_555
A
HOH
312
S
HOH
6
1_555
C
DG
2
D
DG
2
6
1_555
C
DA
3
D
DA
3
6
1_555
A
HIS
115
A
HIS
61
7
1_555
A
ARG
118
A
ARG
64
7
1_555
A
TYR
119
A
TYR
65
7
1_555
A
ARG
123
A
ARG
69
7
1_555
A
GLU
167
A
GLU
113
7
4_546
A
ASN
170
A
ASN
116
7
4_546
A
HOH
309
S
HOH
7
1_555
A
GLU
66
A
GLU
12
5
2_656
A
SER
125
A
SER
71
5
1_555
A
LYS
127
A
LYS
73
5
1_555
A
HOH
308
S
HOH
5
1_555
A
HOH
418
S
HOH
5
1_555
A
LYS
143
A
LYS
89
5
1_555
A
THR
173
A
THR
119
5
1_555
A
TYR
174
A
TYR
120
5
1_555
A
HOH
366
S
HOH
5
1_555
A
HOH
421
S
HOH
5
1_555
A
THR
148
A
THR
94
6
1_555
A
HOH
301
S
HOH
6
1_555
A
HOH
367
S
HOH
6
1_555
C
DT
4
D
DT
4
6
1_555
C
DG
5
D
DG
5
6
1_555
C
HOH
208
V
HOH
6
1_555
A
LYS
89
A
LYS
35
5
3_455
A
ALA
156
A
ALA
102
5
1_555
A
HOH
302
S
HOH
5
1_555
A
HOH
307
S
HOH
5
1_555
A
HOH
436
S
HOH
5
1_555
B
HOH
109
T
HOH
4
1_555
C
DT
4
D
DT
4
4
1_555
C
DG
5
D
DG
5
4
1_555
C
HOH
212
V
HOH
4
1_555
5
C 1 2 1