0.017020
0.000000
0.000000
0.000000
0.011597
0.000000
0.000000
0.000000
0.021654
0.000000
0.000000
0.000000
Wang, Y.-F.
Agniswamy, J.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.755
86.229
46.181
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C37 H49 N3 O8 S
695.865
tert-butyl [(1R,4S)-4-hydroxy-7-{[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamoyl}-1,2,3,4-tetrahydronaphthalen-1-yl]carbamate
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
CL
N
82
N
N
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
S
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
O
N
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
S
N
105
N
O
N
106
N
O
N
107
N
N
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
C
N
113
R
C
N
114
N
O
N
115
S
C
N
116
N
N
N
117
N
C
N
118
N
O
Y
119
N
C
Y
120
N
C
Y
121
N
C
Y
122
N
C
Y
123
N
C
Y
124
N
C
N
125
N
O
N
126
S
C
N
127
N
C
N
128
N
C
N
129
R
C
N
130
N
N
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
C
Y
139
N
C
Y
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
Y
262
N
C
Y
263
N
N
Y
264
N
C
Y
265
N
C
Y
266
N
N
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
S
C
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
N
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
S
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
NA
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
R
C
N
430
N
O
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
N
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
N
480
N
O
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
N
N
494
S
C
N
495
N
C
N
496
N
O
N
497
N
C
N
498
N
C
N
499
N
C
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
doub
Y
94
N
sing
Y
95
N
sing
N
96
N
sing
Y
97
N
doub
Y
98
N
doub
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
Y
103
N
doub
Y
104
N
sing
Y
105
N
sing
N
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
doub
Y
110
N
doub
Y
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
Y
121
N
doub
Y
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
Y
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
Y
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
doub
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
N
265
N
sing
Y
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
sing
Y
446
N
doub
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
Y
465
N
doub
Y
466
N
sing
Y
467
N
sing
N
468
N
sing
Y
469
N
doub
N
470
N
sing
Y
471
N
doub
N
472
N
sing
Y
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
FR
Eur J Med Chem
EJMCA5
0493
1768-3254
160
171
182
10.1016/j.ejmech.2018.09.046
30340140
Design, synthesis, and X-ray studies of potent HIV-1 protease inhibitors incorporating aminothiochromane and aminotetrahydronaphthalene carboxamide derivatives as the P2 ligands.
2018
10.2210/pdb6dv4/pdb
pdb_00006dv4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2016-08-12
RAYONIX MX300HE
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-ID
10740.677
Protease
Q7K, L33I, L63I, C67A, C95A
2
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
695.865
tert-butyl [(1R,4S)-4-hydroxy-7-{[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamoyl}-1,2,3,4-tetrahydronaphthalen-1-yl]carbamate
1
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
142
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
99
pol
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
Biological sequence
1
2.72
54.83
VAPOR DIFFUSION, HANGING DROP
5.5
0.95 M NaCl and 0.1M Sodium Acetate , pH
5.5
298
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2018-10-31
1
1
2019-12-04
1
2
2023-10-11
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
GM53386
United States
National Institutes of Health/National Cancer Institute (NIH/NCI)
GM62920
United States
National Institutes of Health/National Cancer Institute (NIH/NCI)
the Intramural Research Program of the Center for Cancer Research
Japan
Ministry of Education, Culture, Sports, Science and Technology (Japan)
a Grant-in-Aid for Scientific Research (Priority Areas)
Japan
Ministry of Education, Culture, Sports, Science and Technology (Japan)
the Grant to the Cooperative Research Project on Clinical and Epidemiological Studies of Emerging and Reemerging Infectious Diseases (Renkei Jigyo)
Wide-type with DRV
Wide-type with GRL-02815A, a thiochroman heterocycle with (S)-Boc-amine functionality as the P2 ligand
N
RCSB
Y
RCSB
2018-06-22
REL
REL
GA5
GA5
SUBJECT OF INVESTIGATION
NA
SODIUM ION
CL
CHLORIDE ION
GA5
tert-butyl [(1R,4S)-4-hydroxy-7-{[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamoyl}-1,2,3,4-tetrahydronaphthalen-1-yl]carbamate
ACT
ACETATE ION
GOL
GLYCEROL
HOH
water
3NU3
PDB
experimental model
NA
501
2
NA
NA
501
A
CL
512
3
CL
CL
502
A
GA5
201
4
GA5
GA5
201
B
CL
511
3
CL
CL
202
B
ACT
521
5
ACT
ACT
203
B
GOL
531
6
GOL
GOL
204
B
HOH
1107
7
HOH
HOH
601
A
HOH
1118
7
HOH
HOH
602
A
HOH
1124
7
HOH
HOH
603
A
HOH
1055
7
HOH
HOH
604
A
HOH
1058
7
HOH
HOH
605
A
HOH
1119
7
HOH
HOH
606
A
HOH
1041
7
HOH
HOH
607
A
HOH
1051
7
HOH
HOH
608
A
HOH
1002
7
HOH
HOH
609
A
HOH
1083
7
HOH
HOH
610
A
HOH
1053
7
HOH
HOH
611
A
HOH
1115
7
HOH
HOH
612
A
HOH
1085
7
HOH
HOH
613
A
HOH
1120
7
HOH
HOH
614
A
HOH
1008
7
HOH
HOH
615
A
HOH
1011
7
HOH
HOH
616
A
HOH
1062
7
HOH
HOH
617
A
HOH
1138
7
HOH
HOH
618
A
HOH
1012
7
HOH
HOH
619
A
HOH
1014
7
HOH
HOH
620
A
HOH
1006
7
HOH
HOH
621
A
HOH
1045
7
HOH
HOH
622
A
HOH
1067
7
HOH
HOH
623
A
HOH
1044
7
HOH
HOH
624
A
HOH
1123
7
HOH
HOH
625
A
HOH
1144
7
HOH
HOH
626
A
HOH
1034
7
HOH
HOH
627
A
HOH
1050
7
HOH
HOH
628
A
HOH
1016
7
HOH
HOH
629
A
HOH
1003
7
HOH
HOH
630
A
HOH
1063
7
HOH
HOH
631
A
HOH
1122
7
HOH
HOH
632
A
HOH
1052
7
HOH
HOH
633
A
HOH
1079
7
HOH
HOH
634
A
HOH
1130
7
HOH
HOH
635
A
HOH
1089
7
HOH
HOH
636
A
HOH
1113
7
HOH
HOH
637
A
HOH
1005
7
HOH
HOH
638
A
HOH
1004
7
HOH
HOH
639
A
HOH
1102
7
HOH
HOH
640
A
HOH
1039
7
HOH
HOH
641
A
HOH
1021
7
HOH
HOH
642
A
HOH
1017
7
HOH
HOH
643
A
HOH
1024
7
HOH
HOH
644
A
HOH
1071
7
HOH
HOH
645
A
HOH
1133
7
HOH
HOH
646
A
HOH
1047
7
HOH
HOH
647
A
HOH
1028
7
HOH
HOH
648
A
HOH
1030
7
HOH
HOH
649
A
HOH
1022
7
HOH
HOH
650
A
HOH
1080
7
HOH
HOH
651
A
HOH
1095
7
HOH
HOH
652
A
HOH
1092
7
HOH
HOH
653
A
HOH
1111
7
HOH
HOH
654
A
HOH
1106
7
HOH
HOH
655
A
HOH
1145
7
HOH
HOH
656
A
HOH
1064
7
HOH
HOH
657
A
HOH
1110
7
HOH
HOH
658
A
HOH
1101
7
HOH
HOH
1101
B
HOH
1114
7
HOH
HOH
1102
B
HOH
1112
7
HOH
HOH
1103
B
HOH
1098
7
HOH
HOH
1104
B
HOH
1075
7
HOH
HOH
1105
B
HOH
1019
7
HOH
HOH
1106
B
HOH
1027
7
HOH
HOH
1107
B
HOH
1061
7
HOH
HOH
1108
B
HOH
1056
7
HOH
HOH
1109
B
HOH
1001
7
HOH
HOH
1110
B
HOH
1025
7
HOH
HOH
1111
B
HOH
1048
7
HOH
HOH
1112
B
HOH
1087
7
HOH
HOH
1113
B
HOH
1084
7
HOH
HOH
1114
B
HOH
1046
7
HOH
HOH
1115
B
HOH
1049
7
HOH
HOH
1116
B
HOH
1143
7
HOH
HOH
1117
B
HOH
1135
7
HOH
HOH
1118
B
HOH
1059
7
HOH
HOH
1119
B
HOH
1129
7
HOH
HOH
1120
B
HOH
1015
7
HOH
HOH
1121
B
HOH
1142
7
HOH
HOH
1122
B
HOH
1031
7
HOH
HOH
1123
B
HOH
1103
7
HOH
HOH
1124
B
HOH
1082
7
HOH
HOH
1125
B
HOH
1013
7
HOH
HOH
1126
B
HOH
1074
7
HOH
HOH
1127
B
HOH
1090
7
HOH
HOH
1128
B
HOH
1010
7
HOH
HOH
1129
B
HOH
1043
7
HOH
HOH
1130
B
HOH
1009
7
HOH
HOH
1131
B
HOH
1076
7
HOH
HOH
1132
B
HOH
1086
7
HOH
HOH
1133
B
HOH
1023
7
HOH
HOH
1134
B
HOH
1057
7
HOH
HOH
1135
B
HOH
1081
7
HOH
HOH
1136
B
HOH
1088
7
HOH
HOH
1137
B
HOH
1140
7
HOH
HOH
1138
B
HOH
1116
7
HOH
HOH
1139
B
HOH
1054
7
HOH
HOH
1140
B
HOH
1026
7
HOH
HOH
1141
B
HOH
1042
7
HOH
HOH
1142
B
HOH
1121
7
HOH
HOH
1143
B
HOH
1100
7
HOH
HOH
1144
B
HOH
1126
7
HOH
HOH
1145
B
HOH
1104
7
HOH
HOH
1146
B
HOH
1137
7
HOH
HOH
1147
B
HOH
1060
7
HOH
HOH
1148
B
HOH
1105
7
HOH
HOH
1149
B
HOH
1072
7
HOH
HOH
1150
B
HOH
1068
7
HOH
HOH
1151
B
HOH
1078
7
HOH
HOH
1152
B
HOH
1097
7
HOH
HOH
1153
B
HOH
1093
7
HOH
HOH
1154
B
HOH
1139
7
HOH
HOH
1155
B
HOH
1037
7
HOH
HOH
1156
B
HOH
1040
7
HOH
HOH
1157
B
HOH
1073
7
HOH
HOH
1158
B
HOH
1033
7
HOH
HOH
1159
B
HOH
1020
7
HOH
HOH
1160
B
HOH
1066
7
HOH
HOH
1161
B
HOH
1035
7
HOH
HOH
1162
B
HOH
1132
7
HOH
HOH
1163
B
HOH
1018
7
HOH
HOH
1164
B
HOH
1094
7
HOH
HOH
1165
B
HOH
1036
7
HOH
HOH
1166
B
HOH
1007
7
HOH
HOH
1167
B
HOH
1141
7
HOH
HOH
1168
B
HOH
1091
7
HOH
HOH
1169
B
HOH
1108
7
HOH
HOH
1170
B
HOH
1038
7
HOH
HOH
1171
B
HOH
1125
7
HOH
HOH
1172
B
HOH
1032
7
HOH
HOH
1173
B
HOH
1117
7
HOH
HOH
1174
B
HOH
1065
7
HOH
HOH
1175
B
HOH
1029
7
HOH
HOH
1176
B
HOH
1136
7
HOH
HOH
1177
B
HOH
1096
7
HOH
HOH
1178
B
HOH
1069
7
HOH
HOH
1179
B
HOH
1131
7
HOH
HOH
1180
B
HOH
1109
7
HOH
HOH
1181
B
HOH
1077
7
HOH
HOH
1182
B
HOH
1070
7
HOH
HOH
1183
B
HOH
1099
7
HOH
HOH
1184
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
ILE
33
n
33
ILE
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
ALA
67
n
67
ALA
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
ALA
95
n
95
ALA
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
0.1674
0.1739
0.1662
0.1726
0.1896
0.1962
3529
3934
5.0
5.0
70162
author_and_software_defined_assembly
PISA
2
dimeric
none
4980
-49
9580
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
609
I
O
HOH
1_555
95.5
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
621
I
O
HOH
1_555
94.8
A
HOH
609
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
621
I
O
HOH
1_555
90.7
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
630
I
O
HOH
1_555
101.2
A
HOH
609
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
630
I
O
HOH
1_555
76.2
A
HOH
621
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
630
I
O
HOH
1_555
160.1
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
638
I
O
HOH
1_555
171.5
A
HOH
609
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
638
I
O
HOH
1_555
92.6
A
HOH
621
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
638
I
O
HOH
1_555
82.5
A
HOH
630
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
638
I
O
HOH
1_555
83.2
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
639
I
O
HOH
1_555
78.3
A
HOH
609
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
639
I
O
HOH
1_555
173.6
A
HOH
621
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
639
I
O
HOH
1_555
91.4
A
HOH
630
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
639
I
O
HOH
1_555
103.2
A
HOH
638
I
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
639
I
O
HOH
1_555
93.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
ASN
98
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
43
B
N
LYS
43
B
O
GLN
58
B
O
GLN
58
B
N
ILE
66
B
N
ILE
66
B
O
HIS
69
B
O
HIS
69
B
O
LEU
76
B
O
LEU
76
B
N
ILE
33
B
N
ILE
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
LYS
14
B
N
LYS
14
B
O
GLU
65
B
O
GLU
65
1
B
B
OE1
O2
GLU
GOL
65
204
2.18
1
11.57
1.40
123.60
135.17
A
A
A
CD
NE
CZ
ARG
ARG
ARG
41
41
41
N
1
3.29
0.50
120.30
123.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
41
41
41
N
1
14.90
1.40
123.60
138.50
A
A
A
CD
NE
CZ
ARG
ARG
ARG
57
57
57
N
1
6.32
0.50
120.30
126.62
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
-3.08
0.50
120.30
117.22
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
19.80
2.20
113.40
133.20
B
B
B
CA
CB
CG
GLN
GLN
GLN
18
18
18
N
1
3.05
0.50
120.30
123.35
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
1
-3.73
0.50
120.30
116.57
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
57
57
57
N
1
3.91
0.50
120.30
124.21
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
87
87
87
N
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?
0.1962
0.1726
0.1739
1.14
50.00
3934
78691
78691
5.0
91.4
RANDOM
1
FREE R-VALUE
0.0
MOLECULAR REPLACEMENT
3NU3
28
0.0
1684.9
1.14
50.00
155
1716
49
0
1512
0.0135
0.0308
0.000
0.005
0.0803
0.0908
0.0361
0.0000
0.0558
0.0945
1.14
50
6DV4
78843
0.078
1
23.3
7.7
91.2
0.303
1.14
1.18
3.3
1
2.0
52.6
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
refinement
SHELXL
2014
N
HIV-1 wild type protease with GRL-04315A, a tetrahydronaphthalene carboxamide with (R)-Boc-amine and (S)-hydroxyl functionalities as the P2 ligand
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
6
N
N
7
N
N
7
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
AA1
6
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
AA2
6
metalc
2.363
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
metalc
2.428
A
NA
501
C
NA
NA
1_555
A
HOH
609
I
O
HOH
1_555
metalc
2.435
A
NA
501
C
NA
NA
1_555
A
HOH
621
I
O
HOH
1_555
metalc
2.258
A
NA
501
C
NA
NA
1_555
A
HOH
630
I
O
HOH
1_555
metalc
2.815
A
NA
501
C
NA
NA
1_555
A
HOH
638
I
O
HOH
1_555
metalc
2.373
A
NA
501
C
NA
NA
1_555
A
HOH
639
I
O
HOH
1_555
HYDROLASE, ANTIVIRAL PROTEIN
aspartic acid protease, HIV-1 protease inhibitor of GRL-04315A, tetrahydronaphthalene carboxamide, P2 ligand, drug resistance, design and synthesis, HYDROLASE, ANTIVIRAL PROTEIN
Q5RZ08_9HIV1
UNP
1
1
Q5RZ08
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
1
99
6DV4
1
99
Q5RZ08
A
1
1
99
1
99
6DV4
1
99
Q5RZ08
B
1
1
99
1
GLN
engineered mutation
LYS
7
6DV4
A
Q5RZ08
UNP
7
7
1
LEU
engineered mutation
ILE
33
6DV4
A
Q5RZ08
UNP
33
33
1
LEU
engineered mutation
ILE
63
6DV4
A
Q5RZ08
UNP
63
63
1
CYS
engineered mutation
ALA
67
6DV4
A
Q5RZ08
UNP
67
67
1
CYS
engineered mutation
ALA
95
6DV4
A
Q5RZ08
UNP
95
95
2
GLN
engineered mutation
LYS
7
6DV4
B
Q5RZ08
UNP
7
7
2
LEU
engineered mutation
ILE
33
6DV4
B
Q5RZ08
UNP
33
33
2
LEU
engineered mutation
ILE
63
6DV4
B
Q5RZ08
UNP
63
63
2
CYS
engineered mutation
ALA
67
6DV4
B
Q5RZ08
UNP
67
67
2
CYS
engineered mutation
ALA
95
6DV4
B
Q5RZ08
UNP
95
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
TRP
42
A
TRP
42
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
THR
31
A
THR
31
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
ILE
33
B
ILE
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
binding site for residue NA A 501
A
NA
501
Software
6
binding site for residue CL A 502
A
CL
502
Software
3
binding site for residue GA5 B 201
B
GA5
201
Software
35
binding site for residue CL B 202
B
CL
202
Software
1
binding site for residue ACT B 203
B
ACT
203
Software
6
binding site for residue GOL B 204
B
GOL
204
Software
10
A
ASP
60
A
ASP
60
6
1_555
A
HOH
609
I
HOH
6
1_555
A
HOH
621
I
HOH
6
1_555
A
HOH
630
I
HOH
6
1_555
A
HOH
638
I
HOH
6
1_555
A
HOH
639
I
HOH
6
1_555
A
THR
74
A
THR
74
3
1_555
A
ASN
88
A
ASN
88
3
1_555
B
ARG
41
B
ARG
41
3
3_556
A
ARG
8
A
ARG
8
35
1_555
A
LEU
23
A
LEU
23
35
1_555
A
ASP
25
A
ASP
25
35
1_555
A
GLY
27
A
GLY
27
35
1_555
A
ALA
28
A
ALA
28
35
1_555
A
ASP
29
A
ASP
29
35
1_555
A
ASP
30
A
ASP
30
35
1_555
A
ILE
47
A
ILE
47
35
1_555
A
GLY
48
A
GLY
48
35
1_555
A
GLY
49
A
GLY
49
35
1_555
A
ILE
50
A
ILE
50
35
1_555
A
PRO
81
A
PRO
81
35
1_555
A
VAL
82
A
VAL
82
35
1_555
A
ILE
84
A
ILE
84
35
1_555
A
HOH
645
I
HOH
35
1_555
A
HOH
653
I
HOH
35
1_555
B
ARG
8
B
ARG
8
35
1_555
B
ASP
25
B
ASP
25
35
1_555
B
GLY
27
B
GLY
27
35
1_555
B
ALA
28
B
ALA
28
35
1_555
B
ASP
29
B
ASP
29
35
1_555
B
ASP
30
B
ASP
30
35
1_555
B
ILE
47
B
ILE
47
35
1_555
B
GLY
48
B
GLY
48
35
1_555
B
GLY
49
B
GLY
49
35
1_555
B
ILE
50
B
ILE
50
35
1_555
B
PRO
81
B
PRO
81
35
1_555
B
VAL
82
B
VAL
82
35
1_555
B
ILE
84
B
ILE
84
35
1_555
B
HOH
1105
J
HOH
35
1_555
B
HOH
1110
J
HOH
35
1_555
B
HOH
1113
J
HOH
35
1_555
B
HOH
1132
J
HOH
35
1_555
B
HOH
1158
J
HOH
35
1_555
B
HOH
1169
J
HOH
35
1_555
B
TRP
6
B
TRP
6
1
1_555
B
PRO
39
B
PRO
39
6
1_555
B
GLY
40
B
GLY
40
6
1_555
B
ARG
41
B
ARG
41
6
1_555
B
TYR
59
B
TYR
59
6
1_555
B
ASP
60
B
ASP
60
6
1_555
B
HOH
1144
J
HOH
6
1_555
A
GLN
18
A
GLN
18
10
1_556
A
MET
36
A
MET
36
10
1_556
A
SER
37
A
SER
37
10
1_556
B
THR
12
B
THR
12
10
1_555
B
ILE
13
B
ILE
13
10
1_555
B
LYS
14
B
LYS
14
10
1_555
B
GLU
65
B
GLU
65
10
1_555
B
ALA
67
B
ALA
67
10
1_555
B
GLY
68
B
GLY
68
10
1_555
B
HOH
1108
J
HOH
10
1_555
18
P 21 21 2