data_6DXJ # _entry.id 6DXJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DXJ pdb_00006dxj 10.2210/pdb6dxj/pdb WWPDB D_1000235401 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-23 2 'Structure model' 1 1 2019-12-04 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_audit_support.grant_number' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.value' 8 3 'Structure model' '_struct_conn.pdbx_dist_value' 9 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DXJ _pdbx_database_status.recvd_initial_deposition_date 2018-06-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, C.' 1 ? 'Tsodikov, O.V.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_id_ASTM ABCRE6 _citation.journal_id_CSD 0766 _citation.journal_id_ISSN 0907-4449 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 75 _citation.language ? _citation.page_first 32 _citation.page_last ? _citation.title 'Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hou, C.' 1 ? primary 'Tsodikov, O.V.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*GP*GP*CP*CP*TP*C)-3') ; 2427.605 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 5 ? ? ? ? 3 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DA)(DG)(DG)(DC)(DC)(DT)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GAGGCCTC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DC 8 8 8 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 101 1 ZN ZN A . C 2 ZN 1 102 2 ZN ZN A . D 2 ZN 1 103 3 ZN ZN A . E 2 ZN 1 104 4 ZN ZN A . F 2 ZN 1 105 5 ZN ZN A . G 3 HOH 1 201 27 HOH HOH A . G 3 HOH 2 202 19 HOH HOH A . G 3 HOH 3 203 26 HOH HOH A . G 3 HOH 4 204 22 HOH HOH A . G 3 HOH 5 205 17 HOH HOH A . G 3 HOH 6 206 20 HOH HOH A . G 3 HOH 7 207 25 HOH HOH A . G 3 HOH 8 208 23 HOH HOH A . G 3 HOH 9 209 15 HOH HOH A . G 3 HOH 10 210 28 HOH HOH A . G 3 HOH 11 211 30 HOH HOH A . G 3 HOH 12 212 24 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DXJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.174 _cell.length_a_esd ? _cell.length_b 44.174 _cell.length_b_esd ? _cell.length_c 24.281 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DXJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1 mM ds DNA with 5 mM zinc acetate incubated against 55% (v/v) 2-methyl-2,4-pentanediol (MPD)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.078 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.078 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DXJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3080 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.4 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.71 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 301 _reflns_shell.percent_possible_all 99.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.235 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -1.78 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -1.78 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 3.56 _refine.B_iso_max ? _refine.B_iso_mean 40.991 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DXJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.65 _refine.ls_d_res_low 30.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2909 _refine.ls_number_reflns_R_free 141 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.86 _refine.ls_percent_reflns_R_free 4.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21607 _refine.ls_R_factor_R_free 0.25535 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21395 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.107 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 10.898 _refine.overall_SU_ML 0.120 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 178 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 0.011 185 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 90 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.817 1.156 276 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.382 3.000 212 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.060 0.200 24 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 96 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 42 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.307 4.092 185 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.322 4.076 182 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.402 6.111 276 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.546 40.423 239 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.559 40.191 238 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 2.263 3.000 275 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 71.390 5.000 7 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 36.186 5.000 262 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.653 _refine_ls_shell.d_res_low 1.695 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_R_work 215 _refine_ls_shell.percent_reflns_obs 98.68 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.410 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DXJ _struct.title 'Crystal structure of double-stranded DNA GAGGCCTC; crystals grown in Zn2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DXJ _struct_keywords.text 'Zn binding, N7 coordination, palindrome, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DXJ _struct_ref.pdbx_db_accession 6DXJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DXJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DXJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1740 ? 1 MORE -292 ? 1 'SSA (A^2)' 3070 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'Double-stranded DNA' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0.0000000000 1.0000000000 0.0000000000 44.1740000000 1.0000000000 0.0000000000 0.0000000000 -44.1740000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 N7 ? ? ? 1_555 B ZN . ZN ? ? A DG 1 A ZN 101 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc2 metalc ? ? A DG 3 N7 ? ? ? 1_555 D ZN . ZN ? ? A DG 3 A ZN 103 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc3 metalc ? ? A DG 4 N7 ? ? ? 1_555 C ZN . ZN ? ? A DG 4 A ZN 102 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 101 A HOH 205 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc5 metalc ? ? B ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 101 A HOH 209 1_555 ? ? ? ? ? ? ? 2.000 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 2 A DT 7 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 2 A DT 7 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 4 A DC 5 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 4 A DC 5 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 4 A DC 5 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 5 A DG 4 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 5 A DG 4 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 5 A DG 4 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 2 N1 ? ? A DT 7 A DA 2 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 2 N6 ? ? A DT 7 A DA 2 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 1 ? A DG 1 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 102.8 ? 2 N7 ? A DG 1 ? A DG 1 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 97.5 ? 3 O ? G HOH . ? A HOH 205 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 96.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 101 ? 3 'binding site for residue ZN A 101' AC2 Software A ZN 102 ? 1 'binding site for residue ZN A 102' AC3 Software A ZN 103 ? 1 'binding site for residue ZN A 103' AC4 Software A ZN 104 ? 2 'binding site for residue ZN A 104' AC5 Software A ZN 105 ? 2 'binding site for residue ZN A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 3 HOH G . ? HOH A 205 . ? 1_555 ? 3 AC1 3 HOH G . ? HOH A 209 . ? 1_555 ? 4 AC2 1 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC3 1 DG A 3 ? DG A 3 . ? 1_555 ? 6 AC4 2 DT A 7 ? DT A 7 . ? 1_555 ? 7 AC4 2 DC A 8 ? DC A 8 . ? 1_555 ? 8 AC5 2 DC A 6 ? DC A 6 . ? 1_555 ? 9 AC5 2 DT A 7 ? DT A 7 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ZN ZN ZN N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 6DXJ _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_645 -0.562 -0.157 -0.369 -14.358 -13.935 3.230 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DA 2 1_555 A DT 7 7_645 0.183 -0.177 -0.091 -6.978 -12.592 0.571 2 A_DA2:DT7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_645 -0.010 -0.090 0.014 -3.692 -10.099 0.023 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DG 4 1_555 A DC 5 7_645 -0.116 -0.144 0.138 -3.999 -7.907 -1.483 4 A_DG4:DC5_A A 4 ? A 5 ? 19 1 1 A DC 5 1_555 A DG 4 7_645 0.116 -0.144 0.138 3.999 -7.907 -1.483 5 A_DC5:DG4_A A 5 ? A 4 ? 19 1 1 A DC 6 1_555 A DG 3 7_645 0.010 -0.090 0.014 3.692 -10.099 0.023 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DT 7 1_555 A DA 2 7_645 -0.183 -0.177 -0.091 6.978 -12.592 0.571 7 A_DT7:DA2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_645 0.562 -0.157 -0.369 14.358 -13.935 3.230 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_645 A DA 2 1_555 A DT 7 7_645 -0.112 -1.048 3.188 -2.437 8.645 34.226 -2.923 -0.153 2.848 14.384 4.055 35.351 1 AA_DG1DA2:DT7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DA 2 1_555 A DT 7 7_645 A DG 3 1_555 A DC 6 7_645 0.644 -1.695 3.287 1.776 4.704 29.196 -4.280 -0.895 3.016 9.245 -3.491 29.616 2 AA_DA2DG3:DC6DT7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_645 A DG 4 1_555 A DC 5 7_645 0.460 -1.836 3.196 1.535 3.384 33.204 -3.728 -0.559 3.017 5.898 -2.675 33.406 3 AA_DG3DG4:DC5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DG 4 1_555 A DC 5 7_645 A DC 5 1_555 A DG 4 7_645 0.000 -2.568 3.160 0.000 1.649 24.019 -6.654 0.000 2.980 3.957 0.000 24.075 4 AA_DG4DC5:DG4DC5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DC 5 1_555 A DG 4 7_645 A DC 6 1_555 A DG 3 7_645 -0.460 -1.836 3.196 -1.535 3.384 33.204 -3.728 0.559 3.017 5.898 2.675 33.406 5 AA_DC5DC6:DG3DG4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_645 A DT 7 1_555 A DA 2 7_645 -0.644 -1.695 3.287 -1.776 4.704 29.196 -4.280 0.895 3.016 9.245 3.491 29.616 6 AA_DC6DT7:DA2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DT 7 1_555 A DA 2 7_645 A DC 8 1_555 A DG 1 7_645 0.112 -1.048 3.188 2.437 8.645 34.226 -2.923 0.153 2.848 14.384 -4.055 35.351 7 AA_DT7DC8:DG1DA2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_audit_support.funding_organization 'Department of Defense (DOD, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number PC150300P1 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6DXJ _atom_sites.fract_transf_matrix[1][1] 0.022638 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022638 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041184 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P ZN # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 40.741 8.542 4.906 1.00 47.01 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 39.320 8.465 4.703 1.00 44.67 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 38.801 9.721 4.041 1.00 38.62 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 38.944 10.859 4.923 1.00 40.11 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 39.510 10.126 2.755 1.00 39.23 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 38.931 9.450 1.633 1.00 46.80 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 39.273 11.622 2.721 1.00 39.14 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 39.397 11.991 4.189 1.00 38.11 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 40.769 12.273 4.596 1.00 37.46 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 41.619 11.452 5.297 1.00 39.96 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 42.796 11.981 5.494 1.00 39.85 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 42.719 13.224 4.883 1.00 34.49 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 43.688 14.253 4.770 1.00 33.68 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 44.845 14.274 5.208 1.00 34.55 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 43.193 15.346 4.066 1.00 34.15 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 41.926 15.442 3.545 1.00 33.48 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 41.635 16.578 2.899 1.00 39.30 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 41.014 14.491 3.645 1.00 35.70 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 41.476 13.418 4.320 1.00 35.98 ? 1 DG A C4 1 ATOM 20 P P . DA A 1 2 ? 39.857 8.883 0.462 1.00 51.49 ? 2 DA A P 1 ATOM 21 O OP1 . DA A 1 2 ? 38.992 8.081 -0.426 1.00 55.66 ? 2 DA A OP1 1 ATOM 22 O OP2 . DA A 1 2 ? 41.057 8.255 1.071 1.00 55.93 ? 2 DA A OP2 1 ATOM 23 O "O5'" . DA A 1 2 ? 40.313 10.202 -0.306 1.00 48.16 ? 2 DA A "O5'" 1 ATOM 24 C "C5'" . DA A 1 2 ? 39.333 11.030 -0.957 1.00 47.18 ? 2 DA A "C5'" 1 ATOM 25 C "C4'" . DA A 1 2 ? 39.917 12.362 -1.367 1.00 48.43 ? 2 DA A "C4'" 1 ATOM 26 O "O4'" . DA A 1 2 ? 40.272 13.152 -0.207 1.00 49.65 ? 2 DA A "O4'" 1 ATOM 27 C "C3'" . DA A 1 2 ? 41.196 12.315 -2.192 1.00 51.82 ? 2 DA A "C3'" 1 ATOM 28 O "O3'" . DA A 1 2 ? 40.960 12.006 -3.570 1.00 62.07 ? 2 DA A "O3'" 1 ATOM 29 C "C2'" . DA A 1 2 ? 41.729 13.718 -1.989 1.00 47.15 ? 2 DA A "C2'" 1 ATOM 30 C "C1'" . DA A 1 2 ? 41.412 13.956 -0.514 1.00 47.14 ? 2 DA A "C1'" 1 ATOM 31 N N9 . DA A 1 2 ? 42.509 13.538 0.356 1.00 42.90 ? 2 DA A N9 1 ATOM 32 C C8 . DA A 1 2 ? 42.673 12.346 1.019 1.00 43.61 ? 2 DA A C8 1 ATOM 33 N N7 . DA A 1 2 ? 43.794 12.267 1.694 1.00 40.61 ? 2 DA A N7 1 ATOM 34 C C5 . DA A 1 2 ? 44.419 13.481 1.443 1.00 40.33 ? 2 DA A C5 1 ATOM 35 C C6 . DA A 1 2 ? 45.647 14.017 1.866 1.00 35.40 ? 2 DA A C6 1 ATOM 36 N N6 . DA A 1 2 ? 46.499 13.374 2.667 1.00 38.02 ? 2 DA A N6 1 ATOM 37 N N1 . DA A 1 2 ? 45.971 15.257 1.439 1.00 38.05 ? 2 DA A N1 1 ATOM 38 C C2 . DA A 1 2 ? 45.116 15.902 0.634 1.00 35.42 ? 2 DA A C2 1 ATOM 39 N N3 . DA A 1 2 ? 43.938 15.501 0.164 1.00 38.03 ? 2 DA A N3 1 ATOM 40 C C4 . DA A 1 2 ? 43.643 14.269 0.614 1.00 39.34 ? 2 DA A C4 1 ATOM 41 P P . DG A 1 3 ? 42.026 11.126 -4.385 1.00 65.66 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 41.464 10.853 -5.736 1.00 71.69 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 42.452 9.991 -3.522 1.00 65.75 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 43.265 12.115 -4.540 1.00 53.37 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 43.206 13.238 -5.432 1.00 55.35 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 44.311 14.221 -5.124 1.00 44.92 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 44.378 14.513 -3.709 1.00 46.94 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 45.728 13.775 -5.452 1.00 45.34 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 46.044 13.767 -6.850 1.00 54.66 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 46.524 14.809 -4.687 1.00 44.16 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 45.717 14.914 -3.394 1.00 46.66 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 46.244 14.017 -2.371 1.00 45.13 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 45.789 12.769 -2.019 1.00 45.65 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 46.530 12.192 -1.111 1.00 50.55 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 47.543 13.109 -0.861 1.00 40.55 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 48.642 13.045 0.034 1.00 36.32 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 48.947 12.138 0.814 1.00 40.47 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 49.429 14.190 -0.039 1.00 33.80 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 49.191 15.260 -0.868 1.00 34.75 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 50.064 16.276 -0.796 1.00 36.45 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 48.165 15.336 -1.698 1.00 39.48 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 47.390 14.232 -1.645 1.00 40.73 ? 3 DG A C4 1 ATOM 63 P P . DG A 1 4 ? 47.241 12.841 -7.403 1.00 56.61 ? 4 DG A P 1 ATOM 64 O OP1 . DG A 1 4 ? 47.218 12.911 -8.890 1.00 68.44 ? 4 DG A OP1 1 ATOM 65 O OP2 . DG A 1 4 ? 47.156 11.517 -6.743 1.00 63.96 ? 4 DG A OP2 1 ATOM 66 O "O5'" . DG A 1 4 ? 48.558 13.569 -6.879 1.00 49.81 ? 4 DG A "O5'" 1 ATOM 67 C "C5'" . DG A 1 4 ? 48.822 14.950 -7.177 1.00 55.03 ? 4 DG A "C5'" 1 ATOM 68 C "C4'" . DG A 1 4 ? 50.049 15.431 -6.438 1.00 46.70 ? 4 DG A "C4'" 1 ATOM 69 O "O4'" . DG A 1 4 ? 49.839 15.399 -5.004 1.00 50.28 ? 4 DG A "O4'" 1 ATOM 70 C "C3'" . DG A 1 4 ? 51.311 14.604 -6.655 1.00 48.42 ? 4 DG A "C3'" 1 ATOM 71 O "O3'" . DG A 1 4 ? 51.952 14.949 -7.888 1.00 48.79 ? 4 DG A "O3'" 1 ATOM 72 C "C2'" . DG A 1 4 ? 52.136 14.964 -5.433 1.00 44.96 ? 4 DG A "C2'" 1 ATOM 73 C "C1'" . DG A 1 4 ? 51.074 15.114 -4.347 1.00 42.20 ? 4 DG A "C1'" 1 ATOM 74 N N9 . DG A 1 4 ? 50.901 13.896 -3.567 1.00 37.49 ? 4 DG A N9 1 ATOM 75 C C8 . DG A 1 4 ? 49.944 12.922 -3.724 1.00 39.52 ? 4 DG A C8 1 ATOM 76 N N7 . DG A 1 4 ? 50.080 11.930 -2.885 1.00 42.85 ? 4 DG A N7 1 ATOM 77 C C5 . DG A 1 4 ? 51.196 12.270 -2.132 1.00 38.78 ? 4 DG A C5 1 ATOM 78 C C6 . DG A 1 4 ? 51.827 11.584 -1.059 1.00 34.45 ? 4 DG A C6 1 ATOM 79 O O6 . DG A 1 4 ? 51.517 10.503 -0.547 1.00 37.24 ? 4 DG A O6 1 ATOM 80 N N1 . DG A 1 4 ? 52.932 12.284 -0.585 1.00 30.52 ? 4 DG A N1 1 ATOM 81 C C2 . DG A 1 4 ? 53.378 13.487 -1.079 1.00 31.05 ? 4 DG A C2 1 ATOM 82 N N2 . DG A 1 4 ? 54.466 14.003 -0.491 1.00 28.97 ? 4 DG A N2 1 ATOM 83 N N3 . DG A 1 4 ? 52.796 14.137 -2.073 1.00 34.32 ? 4 DG A N3 1 ATOM 84 C C4 . DG A 1 4 ? 51.720 13.475 -2.549 1.00 37.64 ? 4 DG A C4 1 ATOM 85 P P . DC A 1 5 ? 53.095 14.012 -8.492 1.00 45.06 ? 5 DC A P 1 ATOM 86 O OP1 . DC A 1 5 ? 53.530 14.606 -9.775 1.00 48.42 ? 5 DC A OP1 1 ATOM 87 O OP2 . DC A 1 5 ? 52.616 12.610 -8.454 1.00 43.19 ? 5 DC A OP2 1 ATOM 88 O "O5'" . DC A 1 5 ? 54.288 14.181 -7.452 1.00 42.79 ? 5 DC A "O5'" 1 ATOM 89 C "C5'" . DC A 1 5 ? 55.273 13.154 -7.243 1.00 42.26 ? 5 DC A "C5'" 1 ATOM 90 C "C4'" . DC A 1 5 ? 56.154 13.560 -6.085 1.00 39.07 ? 5 DC A "C4'" 1 ATOM 91 O "O4'" . DC A 1 5 ? 55.360 13.602 -4.875 1.00 38.80 ? 5 DC A "O4'" 1 ATOM 92 C "C3'" . DC A 1 5 ? 57.322 12.632 -5.763 1.00 36.30 ? 5 DC A "C3'" 1 ATOM 93 O "O3'" . DC A 1 5 ? 58.492 12.987 -6.501 1.00 38.00 ? 5 DC A "O3'" 1 ATOM 94 C "C2'" . DC A 1 5 ? 57.535 12.898 -4.286 1.00 34.61 ? 5 DC A "C2'" 1 ATOM 95 C "C1'" . DC A 1 5 ? 56.108 13.076 -3.786 1.00 36.00 ? 5 DC A "C1'" 1 ATOM 96 N N1 . DC A 1 5 ? 55.455 11.835 -3.333 1.00 33.40 ? 5 DC A N1 1 ATOM 97 C C2 . DC A 1 5 ? 55.962 11.202 -2.196 1.00 33.06 ? 5 DC A C2 1 ATOM 98 O O2 . DC A 1 5 ? 56.945 11.695 -1.626 1.00 33.26 ? 5 DC A O2 1 ATOM 99 N N3 . DC A 1 5 ? 55.377 10.064 -1.755 1.00 31.47 ? 5 DC A N3 1 ATOM 100 C C4 . DC A 1 5 ? 54.317 9.567 -2.396 1.00 33.30 ? 5 DC A C4 1 ATOM 101 N N4 . DC A 1 5 ? 53.767 8.446 -1.921 1.00 33.88 ? 5 DC A N4 1 ATOM 102 C C5 . DC A 1 5 ? 53.774 10.197 -3.554 1.00 34.39 ? 5 DC A C5 1 ATOM 103 C C6 . DC A 1 5 ? 54.366 11.321 -3.982 1.00 34.37 ? 5 DC A C6 1 ATOM 104 P P . DC A 1 6 ? 59.420 11.858 -7.144 1.00 41.31 ? 6 DC A P 1 ATOM 105 O OP1 . DC A 1 6 ? 60.347 12.519 -8.091 1.00 43.76 ? 6 DC A OP1 1 ATOM 106 O OP2 . DC A 1 6 ? 58.555 10.738 -7.606 1.00 39.56 ? 6 DC A OP2 1 ATOM 107 O "O5'" . DC A 1 6 ? 60.309 11.378 -5.917 1.00 38.35 ? 6 DC A "O5'" 1 ATOM 108 C "C5'" . DC A 1 6 ? 61.291 12.259 -5.357 1.00 35.87 ? 6 DC A "C5'" 1 ATOM 109 C "C4'" . DC A 1 6 ? 61.806 11.707 -4.050 1.00 36.70 ? 6 DC A "C4'" 1 ATOM 110 O "O4'" . DC A 1 6 ? 60.724 11.559 -3.100 1.00 37.29 ? 6 DC A "O4'" 1 ATOM 111 C "C3'" . DC A 1 6 ? 62.436 10.325 -4.134 1.00 34.77 ? 6 DC A "C3'" 1 ATOM 112 O "O3'" . DC A 1 6 ? 63.783 10.422 -4.595 1.00 37.46 ? 6 DC A "O3'" 1 ATOM 113 C "C2'" . DC A 1 6 ? 62.315 9.844 -2.700 1.00 35.69 ? 6 DC A "C2'" 1 ATOM 114 C "C1'" . DC A 1 6 ? 60.960 10.413 -2.284 1.00 37.64 ? 6 DC A "C1'" 1 ATOM 115 N N1 . DC A 1 6 ? 59.825 9.488 -2.456 1.00 33.74 ? 6 DC A N1 1 ATOM 116 C C2 . DC A 1 6 ? 59.685 8.424 -1.559 1.00 32.04 ? 6 DC A C2 1 ATOM 117 O O2 . DC A 1 6 ? 60.516 8.297 -0.644 1.00 35.10 ? 6 DC A O2 1 ATOM 118 N N3 . DC A 1 6 ? 58.644 7.571 -1.701 1.00 30.74 ? 6 DC A N3 1 ATOM 119 C C4 . DC A 1 6 ? 57.771 7.745 -2.696 1.00 30.47 ? 6 DC A C4 1 ATOM 120 N N4 . DC A 1 6 ? 56.760 6.880 -2.799 1.00 30.08 ? 6 DC A N4 1 ATOM 121 C C5 . DC A 1 6 ? 57.893 8.816 -3.627 1.00 30.27 ? 6 DC A C5 1 ATOM 122 C C6 . DC A 1 6 ? 58.927 9.653 -3.474 1.00 31.81 ? 6 DC A C6 1 ATOM 123 P P . DT A 1 7 ? 64.471 9.183 -5.337 1.00 37.79 ? 7 DT A P 1 ATOM 124 O OP1 . DT A 1 7 ? 65.809 9.609 -5.807 1.00 44.05 ? 7 DT A OP1 1 ATOM 125 O OP2 . DT A 1 7 ? 63.498 8.613 -6.297 1.00 36.33 ? 7 DT A OP2 1 ATOM 126 O "O5'" . DT A 1 7 ? 64.675 8.133 -4.161 1.00 36.15 ? 7 DT A "O5'" 1 ATOM 127 C "C5'" . DT A 1 7 ? 65.576 8.412 -3.079 1.00 34.46 ? 7 DT A "C5'" 1 ATOM 128 C "C4'" . DT A 1 7 ? 65.606 7.243 -2.126 1.00 33.10 ? 7 DT A "C4'" 1 ATOM 129 O "O4'" . DT A 1 7 ? 64.304 7.086 -1.527 1.00 34.08 ? 7 DT A "O4'" 1 ATOM 130 C "C3'" . DT A 1 7 ? 65.911 5.888 -2.752 1.00 37.27 ? 7 DT A "C3'" 1 ATOM 131 O "O3'" . DT A 1 7 ? 67.317 5.666 -2.831 1.00 36.46 ? 7 DT A "O3'" 1 ATOM 132 C "C2'" . DT A 1 7 ? 65.258 4.927 -1.778 1.00 36.50 ? 7 DT A "C2'" 1 ATOM 133 C "C1'" . DT A 1 7 ? 64.044 5.705 -1.284 1.00 39.27 ? 7 DT A "C1'" 1 ATOM 134 N N1 . DT A 1 7 ? 62.770 5.360 -1.945 1.00 33.80 ? 7 DT A N1 1 ATOM 135 C C2 . DT A 1 7 ? 62.051 4.293 -1.455 1.00 33.82 ? 7 DT A C2 1 ATOM 136 O O2 . DT A 1 7 ? 62.422 3.616 -0.511 1.00 36.97 ? 7 DT A O2 1 ATOM 137 N N3 . DT A 1 7 ? 60.873 4.048 -2.114 1.00 32.40 ? 7 DT A N3 1 ATOM 138 C C4 . DT A 1 7 ? 60.352 4.750 -3.182 1.00 31.27 ? 7 DT A C4 1 ATOM 139 O O4 . DT A 1 7 ? 59.276 4.413 -3.667 1.00 38.63 ? 7 DT A O4 1 ATOM 140 C C5 . DT A 1 7 ? 61.161 5.851 -3.651 1.00 30.72 ? 7 DT A C5 1 ATOM 141 C C7 . DT A 1 7 ? 60.683 6.662 -4.813 1.00 29.54 ? 7 DT A C7 1 ATOM 142 C C6 . DT A 1 7 ? 62.314 6.096 -3.018 1.00 31.36 ? 7 DT A C6 1 ATOM 143 P P . DC A 1 8 ? 67.930 4.757 -4.001 1.00 41.58 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 69.407 4.770 -3.859 1.00 47.73 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 67.304 5.156 -5.291 1.00 48.82 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 67.428 3.298 -3.621 1.00 38.83 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 67.947 2.641 -2.456 1.00 40.18 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 67.223 1.336 -2.234 1.00 45.78 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 65.825 1.597 -1.999 1.00 41.25 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 67.254 0.383 -3.424 1.00 50.16 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? 68.420 -0.443 -3.365 1.00 57.02 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? 65.979 -0.420 -3.251 1.00 49.40 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 65.045 0.511 -2.481 1.00 43.66 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 63.952 1.062 -3.293 1.00 37.30 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 62.692 0.462 -3.217 1.00 37.84 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? 62.536 -0.511 -2.465 1.00 44.43 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 61.677 0.957 -3.961 1.00 33.87 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 61.887 2.006 -4.761 1.00 31.95 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 60.857 2.460 -5.478 1.00 32.09 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 63.159 2.641 -4.852 1.00 31.65 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 64.156 2.137 -4.113 1.00 34.02 ? 8 DC A C6 1 HETATM 162 ZN ZN . ZN B 2 . ? 44.495 10.892 5.969 1.00 56.35 ? 101 ZN A ZN 1 HETATM 163 ZN ZN . ZN C 2 . ? 49.077 10.202 -3.506 1.00 112.74 ? 102 ZN A ZN 1 HETATM 164 ZN ZN . ZN D 2 . ? 46.391 10.146 -0.747 1.00 101.12 ? 103 ZN A ZN 1 HETATM 165 ZN ZN . ZN E 2 . ? 64.036 5.740 -6.501 1.00 111.82 ? 104 ZN A ZN 1 HETATM 166 ZN ZN . ZN F 2 . ? 60.660 8.059 -8.146 1.00 108.25 ? 105 ZN A ZN 1 HETATM 167 O O . HOH G 3 . ? 40.958 8.650 7.416 1.00 50.27 ? 201 HOH A O 1 HETATM 168 O O . HOH G 3 . ? 70.659 5.389 -1.700 1.00 38.62 ? 202 HOH A O 1 HETATM 169 O O . HOH G 3 . ? 57.710 4.960 -5.811 1.00 44.72 ? 203 HOH A O 1 HETATM 170 O O . HOH G 3 . ? 66.881 11.552 -4.217 1.00 61.22 ? 204 HOH A O 1 HETATM 171 O O . HOH G 3 . ? 45.660 12.251 6.857 1.00 46.97 ? 205 HOH A O 1 HETATM 172 O O . HOH G 3 . ? 58.717 13.822 -1.190 1.00 41.10 ? 206 HOH A O 1 HETATM 173 O O . HOH G 3 . ? 68.581 8.788 -5.565 1.00 67.41 ? 207 HOH A O 1 HETATM 174 O O . HOH G 3 . ? 47.366 10.614 -10.733 1.00 63.39 ? 208 HOH A O 1 HETATM 175 O O . HOH G 3 . ? 43.808 10.057 7.651 1.00 55.17 ? 209 HOH A O 1 HETATM 176 O O . HOH G 3 . ? 37.827 5.393 1.416 1.00 79.77 ? 210 HOH A O 1 HETATM 177 O O . HOH G 3 . ? 43.530 12.992 -9.472 1.00 67.22 ? 211 HOH A O 1 HETATM 178 O O . HOH G 3 . ? 69.593 9.391 -2.899 1.00 52.89 ? 212 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 O "O5'" . DG A 1 ? 0.5391 0.6607 0.5863 -0.0604 0.1255 -0.2073 1 DG A "O5'" 2 C "C5'" . DG A 1 ? 0.5425 0.6259 0.5287 -0.0585 0.0980 -0.1494 1 DG A "C5'" 3 C "C4'" . DG A 1 ? 0.5313 0.6362 0.2996 -0.0939 0.0512 -0.1877 1 DG A "C4'" 4 O "O4'" . DG A 1 ? 0.6246 0.6671 0.2320 -0.1625 0.0336 -0.1646 1 DG A "O4'" 5 C "C3'" . DG A 1 ? 0.5288 0.6843 0.2774 -0.0665 0.0183 -0.1601 1 DG A "C3'" 6 O "O3'" . DG A 1 ? 0.6156 0.8290 0.3334 -0.0796 -0.0278 -0.2204 1 DG A "O3'" 7 C "C2'" . DG A 1 ? 0.5650 0.6794 0.2427 -0.0464 -0.0405 -0.1984 1 DG A "C2'" 8 C "C1'" . DG A 1 ? 0.6207 0.6351 0.1922 -0.0485 -0.0114 -0.1002 1 DG A "C1'" 9 N N9 . DG A 1 ? 0.6611 0.6324 0.1298 -0.0620 0.0137 -0.1321 1 DG A N9 10 C C8 . DG A 1 ? 0.7017 0.6416 0.1750 -0.0716 -0.0421 -0.0833 1 DG A C8 11 N N7 . DG A 1 ? 0.7261 0.6590 0.1287 -0.1073 0.0312 -0.1271 1 DG A N7 12 C C5 . DG A 1 ? 0.6071 0.6557 0.0475 -0.0718 0.0539 -0.1101 1 DG A C5 13 C C6 . DG A 1 ? 0.5603 0.5877 0.1317 0.0008 0.1202 -0.0824 1 DG A C6 14 O O6 . DG A 1 ? 0.5800 0.6817 0.0507 0.0184 0.1148 -0.0292 1 DG A O6 15 N N1 . DG A 1 ? 0.5919 0.6070 0.0984 -0.0192 0.0474 -0.0660 1 DG A N1 16 C C2 . DG A 1 ? 0.6073 0.5409 0.1236 0.0011 0.0432 -0.0804 1 DG A C2 17 N N2 . DG A 1 ? 0.6659 0.5679 0.2591 0.0400 0.0629 -0.0453 1 DG A N2 18 N N3 . DG A 1 ? 0.7168 0.5776 0.0621 -0.0542 0.0262 -0.1144 1 DG A N3 19 C C4 . DG A 1 ? 0.6515 0.6311 0.0844 -0.0330 0.0430 -0.0866 1 DG A C4 20 P P . DA A 2 ? 0.7848 0.8999 0.2718 0.0191 -0.0650 -0.2539 2 DA A P 21 O OP1 . DA A 2 ? 0.8158 1.0447 0.2541 0.0153 -0.1171 -0.2419 2 DA A OP1 22 O OP2 . DA A 2 ? 0.7620 1.0066 0.3564 0.0359 -0.1060 -0.3624 2 DA A OP2 23 O "O5'" . DA A 2 ? 0.8067 0.7989 0.2242 0.0485 -0.0161 -0.3008 2 DA A "O5'" 24 C "C5'" . DA A 2 ? 0.7555 0.7509 0.2862 -0.0364 -0.0061 -0.2312 2 DA A "C5'" 25 C "C4'" . DA A 2 ? 0.7482 0.7949 0.2966 -0.0670 0.0096 -0.1793 2 DA A "C4'" 26 O "O4'" . DA A 2 ? 0.7188 0.8796 0.2877 -0.1132 0.0071 -0.1722 2 DA A "O4'" 27 C "C3'" . DA A 2 ? 0.7486 0.8504 0.3698 -0.0879 0.0279 -0.2241 2 DA A "C3'" 28 O "O3'" . DA A 2 ? 0.9389 1.0690 0.3505 -0.1223 0.1547 -0.3006 2 DA A "O3'" 29 C "C2'" . DA A 2 ? 0.6733 0.8481 0.2699 -0.0887 0.0561 -0.1523 2 DA A "C2'" 30 C "C1'" . DA A 2 ? 0.6953 0.8309 0.2646 -0.0800 0.0625 -0.1356 2 DA A "C1'" 31 N N9 . DA A 2 ? 0.6322 0.8037 0.1940 -0.1097 0.1373 -0.1260 2 DA A N9 32 C C8 . DA A 2 ? 0.6134 0.7501 0.2934 -0.0686 0.0422 -0.1640 2 DA A C8 33 N N7 . DA A 2 ? 0.5943 0.8128 0.1357 -0.0950 0.1018 -0.1865 2 DA A N7 34 C C5 . DA A 2 ? 0.6287 0.7421 0.1615 -0.0715 0.1124 -0.1448 2 DA A C5 35 C C6 . DA A 2 ? 0.6617 0.6249 0.0585 -0.1159 0.1182 -0.1021 2 DA A C6 36 N N6 . DA A 2 ? 0.6436 0.6211 0.1800 -0.0959 0.1257 -0.0755 2 DA A N6 37 N N1 . DA A 2 ? 0.6373 0.6285 0.1798 -0.0925 0.1335 -0.0782 2 DA A N1 38 C C2 . DA A 2 ? 0.5820 0.5961 0.1676 -0.1164 0.1642 -0.0619 2 DA A C2 39 N N3 . DA A 2 ? 0.6227 0.6310 0.1911 -0.1307 0.1279 -0.1060 2 DA A N3 40 C C4 . DA A 2 ? 0.6828 0.6300 0.1816 -0.1066 0.1199 -0.1169 2 DA A C4 41 P P . DG A 3 ? 0.9054 1.2059 0.3833 -0.0812 0.1583 -0.2789 3 DG A P 42 O OP1 . DG A 3 ? 1.1110 1.3099 0.3030 0.0511 0.2150 -0.3104 3 DG A OP1 43 O OP2 . DG A 3 ? 1.0336 1.1961 0.2683 -0.2414 0.1431 -0.2090 3 DG A OP2 44 O "O5'" . DG A 3 ? 0.8932 1.0415 0.0930 -0.0376 0.0337 -0.2180 3 DG A "O5'" 45 C "C5'" . DG A 3 ? 0.7315 0.9572 0.4142 -0.0330 0.1058 -0.0826 3 DG A "C5'" 46 C "C4'" . DG A 3 ? 0.7687 0.7758 0.1619 -0.0076 0.1789 -0.0385 3 DG A "C4'" 47 O "O4'" . DG A 3 ? 0.7025 0.9127 0.1680 0.0066 0.1078 -0.0295 3 DG A "O4'" 48 C "C3'" . DG A 3 ? 0.7391 0.8254 0.1583 -0.0217 0.1057 -0.0545 3 DG A "C3'" 49 O "O3'" . DG A 3 ? 0.9518 1.0411 0.0839 0.0592 -0.0275 -0.0566 3 DG A "O3'" 50 C "C2'" . DG A 3 ? 0.7040 0.7733 0.2003 0.0020 0.0886 -0.0483 3 DG A "C2'" 51 C "C1'" . DG A 3 ? 0.6758 0.8204 0.2764 -0.0057 0.1436 0.0307 3 DG A "C1'" 52 N N9 . DG A 3 ? 0.6636 0.8407 0.2103 -0.0148 0.1313 0.0025 3 DG A N9 53 C C8 . DG A 3 ? 0.7090 0.8111 0.2141 0.0019 0.1207 -0.0111 3 DG A C8 54 N N7 . DG A 3 ? 0.8084 1.0603 0.0519 -0.0930 0.1108 0.0508 3 DG A N7 55 C C5 . DG A 3 ? 0.6520 0.8119 0.0765 0.0416 0.1521 0.0011 3 DG A C5 56 C C6 . DG A 3 ? 0.5935 0.6817 0.1045 -0.0051 0.1510 -0.0703 3 DG A C6 57 O O6 . DG A 3 ? 0.6677 0.7506 0.1192 0.0883 0.0973 -0.1178 3 DG A O6 58 N N1 . DG A 3 ? 0.5898 0.6399 0.0543 0.0247 0.1056 -0.0708 3 DG A N1 59 C C2 . DG A 3 ? 0.5745 0.6447 0.1010 0.0259 0.1270 -0.0782 3 DG A C2 60 N N2 . DG A 3 ? 0.6140 0.6410 0.1298 0.0097 0.1809 -0.0179 3 DG A N2 61 N N3 . DG A 3 ? 0.6286 0.8232 0.0480 -0.0294 0.1069 -0.0600 3 DG A N3 62 C C4 . DG A 3 ? 0.7002 0.7876 0.0596 -0.0265 0.1514 -0.0217 3 DG A C4 63 P P . DG A 4 ? 0.9164 1.1180 0.1163 -0.0267 0.0734 -0.0533 4 DG A P 64 O OP1 . DG A 4 ? 1.0457 1.4380 0.1167 -0.1373 0.2856 -0.0086 4 DG A OP1 65 O OP2 . DG A 4 ? 1.2455 1.0801 0.1046 0.0237 0.0699 -0.0609 4 DG A OP2 66 O "O5'" . DG A 4 ? 0.8615 0.9968 0.0342 -0.0365 0.0819 -0.0330 4 DG A "O5'" 67 C "C5'" . DG A 4 ? 0.8174 0.9373 0.3361 0.0297 0.1093 -0.0067 4 DG A "C5'" 68 C "C4'" . DG A 4 ? 0.7459 0.8079 0.2204 0.0212 0.2180 0.0618 4 DG A "C4'" 69 O "O4'" . DG A 4 ? 0.7532 0.9399 0.2172 0.0729 0.2057 0.0414 4 DG A "O4'" 70 C "C3'" . DG A 4 ? 0.7906 0.7893 0.2599 0.0339 0.1928 -0.0057 4 DG A "C3'" 71 O "O3'" . DG A 4 ? 0.8220 0.8344 0.1974 0.0260 0.1446 -0.0076 4 DG A "O3'" 72 C "C2'" . DG A 4 ? 0.7316 0.7269 0.2498 0.0740 0.1991 -0.0033 4 DG A "C2'" 73 C "C1'" . DG A 4 ? 0.7529 0.7071 0.1434 0.0606 0.1605 0.0080 4 DG A "C1'" 74 N N9 . DG A 4 ? 0.6602 0.6931 0.0710 0.0806 0.0875 0.0019 4 DG A N9 75 C C8 . DG A 4 ? 0.6841 0.7027 0.1145 0.0731 0.0777 0.0253 4 DG A C8 76 N N7 . DG A 4 ? 0.7026 0.8297 0.0955 0.1659 0.0786 0.0647 4 DG A N7 77 C C5 . DG A 4 ? 0.6295 0.6505 0.1933 0.1166 0.1287 0.0129 4 DG A C5 78 C C6 . DG A 4 ? 0.5829 0.6029 0.1229 0.0543 0.1320 -0.0185 4 DG A C6 79 O O6 . DG A 4 ? 0.7396 0.6228 0.0525 0.0624 0.1374 -0.0097 4 DG A O6 80 N N1 . DG A 4 ? 0.5435 0.5498 0.0662 0.0990 0.1326 -0.0339 4 DG A N1 81 C C2 . DG A 4 ? 0.5510 0.5250 0.1036 0.0790 0.0912 -0.0401 4 DG A C2 82 N N2 . DG A 4 ? 0.5473 0.4733 0.0798 0.0404 0.1398 -0.0040 4 DG A N2 83 N N3 . DG A 4 ? 0.6062 0.6352 0.0623 0.1016 0.1462 0.0158 4 DG A N3 84 C C4 . DG A 4 ? 0.5939 0.6672 0.1690 0.1086 0.0986 0.0292 4 DG A C4 85 P P . DC A 5 ? 0.8068 0.7751 0.1299 0.0356 0.0969 -0.0033 5 DC A P 86 O OP1 . DC A 5 ? 0.7787 0.9555 0.1052 0.0969 0.0586 0.0643 5 DC A OP1 87 O OP2 . DC A 5 ? 0.8267 0.7698 0.0443 0.0264 0.1093 -0.0517 5 DC A OP2 88 O "O5'" . DC A 5 ? 0.6976 0.8012 0.1271 0.0552 0.1731 0.0402 5 DC A "O5'" 89 C "C5'" . DC A 5 ? 0.6651 0.6964 0.2440 0.0123 0.0479 -0.0159 5 DC A "C5'" 90 C "C4'" . DC A 5 ? 0.5918 0.6616 0.2310 0.0250 0.0954 -0.0246 5 DC A "C4'" 91 O "O4'" . DC A 5 ? 0.6554 0.6724 0.1463 0.0913 0.0533 -0.0848 5 DC A "O4'" 92 C "C3'" . DC A 5 ? 0.6311 0.5694 0.1785 -0.0008 0.0294 -0.0105 5 DC A "C3'" 93 O "O3'" . DC A 5 ? 0.6265 0.6149 0.2022 0.0113 0.0391 -0.0019 5 DC A "O3'" 94 C "C2'" . DC A 5 ? 0.5779 0.5352 0.2019 0.0349 -0.0002 -0.0612 5 DC A "C2'" 95 C "C1'" . DC A 5 ? 0.6065 0.5697 0.1915 0.0567 0.0354 -0.0535 5 DC A "C1'" 96 N N1 . DC A 5 ? 0.5389 0.5568 0.1733 0.0740 0.0227 -0.0914 5 DC A N1 97 C C2 . DC A 5 ? 0.5310 0.5976 0.1272 0.0780 0.0500 -0.0788 5 DC A C2 98 O O2 . DC A 5 ? 0.5765 0.6417 0.0454 0.0918 0.0347 -0.0895 5 DC A O2 99 N N3 . DC A 5 ? 0.5495 0.6001 0.0462 0.0761 0.0097 -0.0976 5 DC A N3 100 C C4 . DC A 5 ? 0.5120 0.5474 0.2058 0.0513 0.0182 -0.0573 5 DC A C4 101 N N4 . DC A 5 ? 0.5902 0.5971 0.0997 0.0026 0.0584 -0.0795 5 DC A N4 102 C C5 . DC A 5 ? 0.5591 0.5867 0.1607 0.0529 0.0091 -0.0680 5 DC A C5 103 C C6 . DC A 5 ? 0.5604 0.6047 0.1408 0.0549 0.0090 -0.0802 5 DC A C6 104 P P . DC A 6 ? 0.7213 0.6325 0.2156 0.0473 0.0902 0.0234 6 DC A P 105 O OP1 . DC A 6 ? 0.6879 0.6212 0.3534 0.0126 0.0189 0.1369 6 DC A OP1 106 O OP2 . DC A 6 ? 0.7321 0.6354 0.1355 0.0732 0.1695 -0.0496 6 DC A OP2 107 O "O5'" . DC A 6 ? 0.6216 0.5975 0.2377 -0.0453 0.0587 -0.0444 6 DC A "O5'" 108 C "C5'" . DC A 6 ? 0.5950 0.5536 0.2142 -0.0194 0.0870 -0.0595 6 DC A "C5'" 109 C "C4'" . DC A 6 ? 0.6130 0.5377 0.2437 -0.0302 0.0723 -0.0292 6 DC A "C4'" 110 O "O4'" . DC A 6 ? 0.6674 0.5451 0.2041 -0.0232 0.0853 -0.0881 6 DC A "O4'" 111 C "C3'" . DC A 6 ? 0.5969 0.5351 0.1890 -0.0509 0.0789 -0.0521 6 DC A "C3'" 112 O "O3'" . DC A 6 ? 0.6179 0.6231 0.1820 -0.0653 0.0632 -0.0568 6 DC A "O3'" 113 C "C2'" . DC A 6 ? 0.5837 0.5668 0.2054 -0.0361 0.1308 -0.0462 6 DC A "C2'" 114 C "C1'" . DC A 6 ? 0.6301 0.5280 0.2718 0.0070 0.1496 -0.0740 6 DC A "C1'" 115 N N1 . DC A 6 ? 0.5684 0.5803 0.1329 0.0520 0.0821 -0.0711 6 DC A N1 116 C C2 . DC A 6 ? 0.5739 0.5864 0.0569 0.0516 0.0796 -0.0885 6 DC A C2 117 O O2 . DC A 6 ? 0.6174 0.6512 0.0647 0.1376 0.0715 -0.0172 6 DC A O2 118 N N3 . DC A 6 ? 0.5511 0.5503 0.0666 0.0646 0.0557 -0.0734 6 DC A N3 119 C C4 . DC A 6 ? 0.4955 0.5050 0.1570 0.0435 0.0194 -0.0901 6 DC A C4 120 N N4 . DC A 6 ? 0.5278 0.4968 0.1180 0.0207 0.0757 -0.0903 6 DC A N4 121 C C5 . DC A 6 ? 0.5081 0.5134 0.1285 0.0701 0.0536 -0.0940 6 DC A C5 122 C C6 . DC A 6 ? 0.5156 0.5437 0.1493 0.0378 0.0720 -0.0433 6 DC A C6 123 P P . DT A 7 ? 0.6581 0.6751 0.1025 -0.0392 0.0697 -0.0752 7 DT A P 124 O OP1 . DT A 7 ? 0.6828 0.8664 0.1243 -0.0741 0.0782 -0.0198 7 DT A OP1 125 O OP2 . DT A 7 ? 0.6902 0.6435 0.0466 -0.0289 0.0505 -0.0874 7 DT A OP2 126 O "O5'" . DT A 7 ? 0.5502 0.6634 0.1598 0.0098 0.0533 -0.0777 7 DT A "O5'" 127 C "C5'" . DT A 7 ? 0.5105 0.5667 0.2320 -0.0606 0.0124 -0.0321 7 DT A "C5'" 128 C "C4'" . DT A 7 ? 0.5283 0.6130 0.1161 -0.0870 -0.0466 -0.0604 7 DT A "C4'" 129 O "O4'" . DT A 7 ? 0.5184 0.6611 0.1151 -0.0813 -0.0590 -0.1190 7 DT A "O4'" 130 C "C3'" . DT A 7 ? 0.5374 0.6149 0.2636 -0.0637 -0.0468 -0.0687 7 DT A "C3'" 131 O "O3'" . DT A 7 ? 0.5996 0.7047 0.0809 0.0100 -0.0168 -0.0524 7 DT A "O3'" 132 C "C2'" . DT A 7 ? 0.5516 0.6044 0.2306 -0.0124 -0.0701 -0.0690 7 DT A "C2'" 133 C "C1'" . DT A 7 ? 0.6045 0.6153 0.2720 0.0008 -0.0121 -0.1237 7 DT A "C1'" 134 N N1 . DT A 7 ? 0.5562 0.5970 0.1310 0.0305 0.0691 -0.0636 7 DT A N1 135 C C2 . DT A 7 ? 0.5878 0.6021 0.0949 -0.0125 0.0450 -0.0801 7 DT A C2 136 O O2 . DT A 7 ? 0.7038 0.5925 0.1082 0.0224 0.0338 -0.0902 7 DT A O2 137 N N3 . DT A 7 ? 0.5798 0.5854 0.0656 0.0084 0.0520 -0.0857 7 DT A N3 138 C C4 . DT A 7 ? 0.6201 0.5146 0.0532 0.0037 0.0469 -0.1085 7 DT A C4 139 O O4 . DT A 7 ? 0.5552 0.6747 0.2378 -0.0048 0.1287 -0.1737 7 DT A O4 140 C C5 . DT A 7 ? 0.5049 0.5148 0.1472 0.0210 0.0369 -0.0991 7 DT A C5 141 C C7 . DT A 7 ? 0.4849 0.4422 0.1950 0.0048 0.0686 -0.0750 7 DT A C7 142 C C6 . DT A 7 ? 0.4613 0.5989 0.1313 0.0270 0.0779 -0.0516 7 DT A C6 143 P P . DC A 8 ? 0.6283 0.7799 0.1717 0.0783 -0.0478 -0.1411 8 DC A P 144 O OP1 . DC A 8 ? 0.6423 0.9480 0.2233 0.1512 -0.0753 -0.1211 8 DC A OP1 145 O OP2 . DC A 8 ? 0.6611 1.0416 0.1521 0.1262 -0.1125 -0.2514 8 DC A OP2 146 O "O5'" . DC A 8 ? 0.6412 0.7090 0.1249 0.0745 -0.1218 -0.1250 8 DC A "O5'" 147 C "C5'" . DC A 8 ? 0.5809 0.5972 0.3485 0.1005 -0.1962 -0.0414 8 DC A "C5'" 148 C "C4'" . DC A 8 ? 0.6351 0.6482 0.4560 0.0569 -0.1170 -0.0331 8 DC A "C4'" 149 O "O4'" . DC A 8 ? 0.6530 0.5709 0.3433 0.0667 -0.0765 -0.0234 8 DC A "O4'" 150 C "C3'" . DC A 8 ? 0.7279 0.6567 0.5210 0.0304 -0.0374 -0.0668 8 DC A "C3'" 151 O "O3'" . DC A 8 ? 0.7964 0.8700 0.5000 0.1318 -0.0933 -0.1039 8 DC A "O3'" 152 C "C2'" . DC A 8 ? 0.6837 0.6287 0.5646 0.0566 -0.0318 -0.0501 8 DC A "C2'" 153 C "C1'" . DC A 8 ? 0.6114 0.6006 0.4467 0.0325 -0.0516 -0.0245 8 DC A "C1'" 154 N N1 . DC A 8 ? 0.6525 0.5761 0.1886 0.0069 -0.0302 -0.0692 8 DC A N1 155 C C2 . DC A 8 ? 0.6072 0.5721 0.2584 0.0470 -0.0618 -0.0557 8 DC A C2 156 O O2 . DC A 8 ? 0.8328 0.4761 0.3790 -0.0060 -0.0482 -0.1008 8 DC A O2 157 N N3 . DC A 8 ? 0.6244 0.5484 0.1140 0.0101 -0.0807 -0.0959 8 DC A N3 158 C C4 . DC A 8 ? 0.5142 0.5495 0.1501 0.0653 0.0637 -0.0868 8 DC A C4 159 N N4 . DC A 8 ? 0.5240 0.5218 0.1734 0.0267 0.0354 -0.0546 8 DC A N4 160 C C5 . DC A 8 ? 0.5556 0.5631 0.0837 0.0258 0.0444 -0.1017 8 DC A C5 161 C C6 . DC A 8 ? 0.5321 0.5679 0.1924 0.0151 0.0431 -0.0972 8 DC A C6 162 ZN ZN . ZN B . ? 0.8555 0.9319 0.3535 -0.0221 0.0672 -0.1014 101 ZN A ZN 163 ZN ZN . ZN C . ? 1.8692 1.3373 1.0770 -0.3357 0.1189 -0.3349 102 ZN A ZN 164 ZN ZN . ZN D . ? 2.0422 1.1821 0.6175 -0.4536 0.0320 -0.2410 103 ZN A ZN 165 ZN ZN . ZN E . ? 1.5836 1.9128 0.7522 -0.0082 0.4230 0.0146 104 ZN A ZN 166 ZN ZN . ZN F . ? 1.7517 1.5721 0.7889 0.3064 -0.1341 0.1885 105 ZN A ZN 167 O O . HOH G . ? 0.9270 0.5966 0.3861 -0.1102 0.1650 -0.0879 201 HOH A O 168 O O . HOH G . ? 0.5236 0.7072 0.2366 -0.0355 -0.1477 0.0304 202 HOH A O 169 O O . HOH G . ? 0.6463 0.7710 0.2818 -0.0080 -0.1332 -0.1819 203 HOH A O 170 O O . HOH G . ? 0.9101 1.0570 0.3588 -0.3158 -0.1447 0.3908 204 HOH A O 171 O O . HOH G . ? 0.6683 0.9172 0.1990 0.1055 0.0349 -0.0991 205 HOH A O 172 O O . HOH G . ? 0.7405 0.5608 0.2602 0.0566 0.1410 -0.0895 206 HOH A O 173 O O . HOH G . ? 0.8568 1.5451 0.1594 0.1823 0.0889 -0.0049 207 HOH A O 174 O O . HOH G . ? 0.8812 0.9950 0.5323 0.0188 -0.3123 -0.2741 208 HOH A O 175 O O . HOH G . ? 0.9905 0.7882 0.3172 -0.1619 -0.1040 -0.0619 209 HOH A O 176 O O . HOH G . ? 0.8805 1.4127 0.7375 0.2776 -0.0265 -0.0472 210 HOH A O 177 O O . HOH G . ? 0.9619 1.3257 0.2663 0.2634 -0.1749 0.1780 211 HOH A O 178 O O . HOH G . ? 0.6463 0.9553 0.4080 -0.1811 -0.0236 0.0266 212 HOH A O #