0.006566
0.000000
0.000000
0.000000
0.006566
0.000000
0.000000
0.000000
0.006566
0.00000
0.00000
0.00000
3.54356
2.42580
25.62398
1.50364
0.0
2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
0.51345
0.48472
24.73122
6.32584
0.0
2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
4.01032
2.96436
19.97189
1.75589
0.0
2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
4.49882
3.47563
15.80542
1.70748
0.0
2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
5.12366
3.84317
3.49406
27.47979
0.0
2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
9.55732
6.39887
1.23737
29.19336
0.0
2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
Alonzo, D.A.
Huguenin-Dezot, N.
Heberlig, G.W.
Mahesh, M.
Nguyen, D.P.
Dornan, M.H.
Boddy, C.N.
Chin, J.W.
Schmeing, T.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.000
90.000
90.000
152.298
152.298
152.298
3532503.497
C3 H6 O3
90.078
(2S)-2-HYDROXYPROPANOIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C3 H8 N2 O2
104.108
n
DIAMINOPROPANOIC ACID
L-peptide linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H10 O3
118.131
n
DEAMINOHYDROXYVALINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
O
N
5
S
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
N
N
14
S
C
N
15
N
C
N
16
N
O
N
17
N
C
N
18
N
O
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
N
N
27
S
C
N
28
N
C
N
29
N
O
N
30
N
C
N
31
N
C
N
32
N
C
N
33
N
N
N
34
N
C
N
35
N
N
N
36
N
N
N
37
N
O
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
N
N
54
S
C
N
55
N
C
N
56
N
O
N
57
N
C
N
58
N
C
N
59
N
O
N
60
N
N
N
61
N
O
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
R
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
S
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
N
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
R
C
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
Y
188
N
C
Y
189
N
N
Y
190
N
C
Y
191
N
C
Y
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
S
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
S
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
R
C
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
O
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
doub
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
Y
183
N
sing
Y
184
N
doub
Y
185
N
doub
N
186
N
sing
Y
187
N
sing
N
188
N
sing
Y
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
UK
Nature
NATUAS
0006
1476-4687
565
112
117
10.1038/s41586-018-0781-z
30542153
Trapping biosynthetic acyl-enzyme intermediates with encoded 2,3-diaminopropionic acid.
2019
10.2210/pdb6ecd/pdb
pdb_00006ecd
100
1
PIXEL
2017-03-13
DECTRIS PILATUS 6M-F
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
.9792
1.0
24-ID-C
APS
.9792
SYNCHROTRON
APS BEAMLINE 24-ID-C
33095.512
Vlm2
3.1.2.-
thioesterase domain (UNP residues 2368-2655)
1
man
polymer
388.455
tetradepsipeptide
1
syn
polymer
18.015
water
106
nat
water
no
yes
MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGET
PVYPSFEEMVQFCSDSAAGVAGDGVYIGGH(DPP)LGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEE
ETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIP
IHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG
MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGET
PVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKV
FILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVF
RTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG
A
polypeptide(L)
no
yes
(VAD)(DVA)(2OP)V
VVXV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
303
15141
vlm2
285482
Streptomyces tsusimaensis
469008
Escherichia coli BL21(DE3)
Biological sequence
1
4.42
72.19
VAPOR DIFFUSION, HANGING DROP
8.0
1.65 M DL-malic acid, pH 8.0, 25 mM HEPES, pH 8.0, 100 mM sodium chloride, 0.2 mM TCEP
295
citation
citation
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Data collection
Database references
Data collection
Database references
Author supporting evidence
Data collection
Database references
Refinement description
Data collection
1
0
2018-12-12
1
1
2018-12-26
1
2
2019-01-16
1
3
2020-01-08
1
4
2023-10-11
1
5
2023-11-15
_citation.pdbx_database_id_PubMed
_citation.title
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Canada
Canadian Institutes of Health Research (CIHR)
106615
N
RCSB
Y
RCSB
2018-08-07
REL
REL
HOH
water
32630
synthetic construct
sample
1
4
6ECB
PDB entry 6ECB
PDB
experimental model
HOH
86
3
HOH
HOH
2701
A
HOH
30
3
HOH
HOH
2702
A
HOH
112
3
HOH
HOH
2703
A
HOH
32
3
HOH
HOH
2704
A
HOH
59
3
HOH
HOH
2705
A
HOH
54
3
HOH
HOH
2706
A
HOH
83
3
HOH
HOH
2707
A
HOH
79
3
HOH
HOH
2708
A
HOH
24
3
HOH
HOH
2709
A
HOH
49
3
HOH
HOH
2710
A
HOH
55
3
HOH
HOH
2711
A
HOH
29
3
HOH
HOH
2712
A
HOH
94
3
HOH
HOH
2713
A
HOH
37
3
HOH
HOH
2714
A
HOH
97
3
HOH
HOH
2715
A
HOH
8
3
HOH
HOH
2716
A
HOH
101
3
HOH
HOH
2717
A
HOH
17
3
HOH
HOH
2718
A
HOH
96
3
HOH
HOH
2719
A
HOH
40
3
HOH
HOH
2720
A
HOH
78
3
HOH
HOH
2721
A
HOH
16
3
HOH
HOH
2722
A
HOH
47
3
HOH
HOH
2723
A
HOH
18
3
HOH
HOH
2724
A
HOH
28
3
HOH
HOH
2725
A
HOH
12
3
HOH
HOH
2726
A
HOH
13
3
HOH
HOH
2727
A
HOH
39
3
HOH
HOH
2728
A
HOH
10
3
HOH
HOH
2729
A
HOH
42
3
HOH
HOH
2730
A
HOH
67
3
HOH
HOH
2731
A
HOH
5
3
HOH
HOH
2732
A
HOH
21
3
HOH
HOH
2733
A
HOH
2
3
HOH
HOH
2734
A
HOH
114
3
HOH
HOH
2735
A
HOH
6
3
HOH
HOH
2736
A
HOH
1
3
HOH
HOH
2737
A
HOH
45
3
HOH
HOH
2738
A
HOH
9
3
HOH
HOH
2739
A
HOH
22
3
HOH
HOH
2740
A
HOH
48
3
HOH
HOH
2741
A
HOH
3
3
HOH
HOH
2742
A
HOH
19
3
HOH
HOH
2743
A
HOH
89
3
HOH
HOH
2744
A
HOH
111
3
HOH
HOH
2745
A
HOH
87
3
HOH
HOH
2746
A
HOH
15
3
HOH
HOH
2747
A
HOH
72
3
HOH
HOH
2748
A
HOH
64
3
HOH
HOH
2749
A
HOH
81
3
HOH
HOH
2750
A
HOH
35
3
HOH
HOH
2751
A
HOH
41
3
HOH
HOH
2752
A
HOH
95
3
HOH
HOH
2753
A
HOH
23
3
HOH
HOH
2754
A
HOH
53
3
HOH
HOH
2755
A
HOH
69
3
HOH
HOH
2756
A
HOH
52
3
HOH
HOH
2757
A
HOH
88
3
HOH
HOH
2758
A
HOH
100
3
HOH
HOH
2759
A
HOH
31
3
HOH
HOH
2760
A
HOH
25
3
HOH
HOH
2761
A
HOH
57
3
HOH
HOH
2762
A
HOH
68
3
HOH
HOH
2763
A
HOH
104
3
HOH
HOH
2764
A
HOH
33
3
HOH
HOH
2765
A
HOH
26
3
HOH
HOH
2766
A
HOH
34
3
HOH
HOH
2767
A
HOH
106
3
HOH
HOH
2768
A
HOH
11
3
HOH
HOH
2769
A
HOH
56
3
HOH
HOH
2770
A
HOH
103
3
HOH
HOH
2771
A
HOH
58
3
HOH
HOH
2772
A
HOH
65
3
HOH
HOH
2773
A
HOH
4
3
HOH
HOH
2774
A
HOH
108
3
HOH
HOH
2775
A
HOH
50
3
HOH
HOH
2776
A
HOH
62
3
HOH
HOH
2777
A
HOH
63
3
HOH
HOH
2778
A
HOH
38
3
HOH
HOH
2779
A
HOH
20
3
HOH
HOH
2780
A
HOH
46
3
HOH
HOH
2781
A
HOH
44
3
HOH
HOH
2782
A
HOH
91
3
HOH
HOH
2783
A
HOH
43
3
HOH
HOH
2784
A
HOH
27
3
HOH
HOH
2785
A
HOH
107
3
HOH
HOH
2786
A
HOH
99
3
HOH
HOH
2787
A
HOH
98
3
HOH
HOH
2788
A
HOH
51
3
HOH
HOH
2789
A
HOH
109
3
HOH
HOH
2790
A
HOH
77
3
HOH
HOH
2791
A
HOH
90
3
HOH
HOH
2792
A
HOH
7
3
HOH
HOH
2793
A
HOH
61
3
HOH
HOH
2794
A
HOH
93
3
HOH
HOH
2795
A
HOH
36
3
HOH
HOH
2796
A
HOH
60
3
HOH
HOH
2797
A
HOH
92
3
HOH
HOH
2798
A
HOH
66
3
HOH
HOH
2799
A
HOH
110
3
HOH
HOH
2800
A
HOH
14
3
HOH
HOH
2801
A
HOH
105
3
HOH
HOH
2802
A
HOH
70
3
HOH
HOH
2803
A
HOH
73
3
HOH
HOH
2804
A
HOH
113
3
HOH
HOH
2805
A
HOH
74
3
HOH
HOH
2806
A
n
1
2353
A
n
2
2354
A
n
3
2355
A
n
4
2356
A
n
5
2357
A
n
6
2358
A
n
7
2359
A
n
8
2360
A
n
9
2361
A
n
10
2362
A
n
11
2363
A
n
12
2364
A
n
13
2365
A
n
14
2366
A
n
15
2367
A
n
16
2368
A
n
17
2369
A
n
18
2370
A
n
19
2371
A
n
20
2372
A
n
21
2373
A
n
22
2374
A
ASP
2375
n
23
ASP
2375
A
PRO
2376
n
24
PRO
2376
A
THR
2377
n
25
THR
2377
A
ALA
2378
n
26
ALA
2378
A
LYS
2379
n
27
LYS
2379
A
LEU
2380
n
28
LEU
2380
A
VAL
2381
n
29
VAL
2381
A
ARG
2382
n
30
ARG
2382
A
LEU
2383
n
31
LEU
2383
A
ASN
2384
n
32
ASN
2384
A
PRO
2385
n
33
PRO
2385
A
n
34
2386
A
n
35
2387
A
GLY
2388
n
36
GLY
2388
A
ASP
2389
n
37
ASP
2389
A
GLY
2390
n
38
GLY
2390
A
PRO
2391
n
39
PRO
2391
A
GLY
2392
n
40
GLY
2392
A
ILE
2393
n
41
ILE
2393
A
VAL
2394
n
42
VAL
2394
A
PHE
2395
n
43
PHE
2395
A
ALA
2396
n
44
ALA
2396
A
PRO
2397
n
45
PRO
2397
A
PRO
2398
n
46
PRO
2398
A
ALA
2399
n
47
ALA
2399
A
GLY
2400
n
48
GLY
2400
A
GLY
2401
n
49
GLY
2401
A
THR
2402
n
50
THR
2402
A
VAL
2403
n
51
VAL
2403
A
LEU
2404
n
52
LEU
2404
A
GLY
2405
n
53
GLY
2405
A
TYR
2406
n
54
TYR
2406
A
ILE
2407
n
55
ILE
2407
A
GLU
2408
n
56
GLU
2408
A
LEU
2409
n
57
LEU
2409
A
ALA
2410
n
58
ALA
2410
A
ARG
2411
n
59
ARG
2411
A
HIS
2412
n
60
HIS
2412
A
LEU
2413
n
61
LEU
2413
A
LYS
2414
n
62
LYS
2414
A
GLY
2415
n
63
GLY
2415
A
PHE
2416
n
64
PHE
2416
A
GLY
2417
n
65
GLY
2417
A
GLU
2418
n
66
GLU
2418
A
ILE
2419
n
67
ILE
2419
A
HIS
2420
n
68
HIS
2420
A
GLY
2421
n
69
GLY
2421
A
VAL
2422
n
70
VAL
2422
A
GLU
2423
n
71
GLU
2423
A
ALA
2424
n
72
ALA
2424
A
PRO
2425
n
73
PRO
2425
A
GLY
2426
n
74
GLY
2426
A
LEU
2427
n
75
LEU
2427
A
GLY
2428
n
76
GLY
2428
A
n
77
2429
A
n
78
2430
A
GLU
2431
n
79
GLU
2431
A
THR
2432
n
80
THR
2432
A
PRO
2433
n
81
PRO
2433
A
VAL
2434
n
82
VAL
2434
A
TYR
2435
n
83
TYR
2435
A
PRO
2436
n
84
PRO
2436
A
SER
2437
n
85
SER
2437
A
PHE
2438
n
86
PHE
2438
A
GLU
2439
n
87
GLU
2439
A
GLU
2440
n
88
GLU
2440
A
MET
2441
n
89
MET
2441
A
VAL
2442
n
90
VAL
2442
A
GLN
2443
n
91
GLN
2443
A
PHE
2444
n
92
PHE
2444
A
CYS
2445
n
93
CYS
2445
A
SER
2446
n
94
SER
2446
A
ASP
2447
n
95
ASP
2447
A
SER
2448
n
96
SER
2448
A
ALA
2449
n
97
ALA
2449
A
ALA
2450
n
98
ALA
2450
A
GLY
2451
n
99
GLY
2451
A
VAL
2452
n
100
VAL
2452
A
ALA
2453
n
101
ALA
2453
A
GLY
2454
n
102
GLY
2454
A
ASP
2455
n
103
ASP
2455
A
GLY
2456
n
104
GLY
2456
A
VAL
2457
n
105
VAL
2457
A
TYR
2458
n
106
TYR
2458
A
ILE
2459
n
107
ILE
2459
A
GLY
2460
n
108
GLY
2460
A
GLY
2461
n
109
GLY
2461
A
HIS
2462
n
110
HIS
2462
A
DPP
2463
n
111
DPP
2463
A
LEU
2464
n
112
LEU
2464
A
GLY
2465
n
113
GLY
2465
A
GLY
2466
n
114
GLY
2466
A
HIS
2467
n
115
HIS
2467
A
ILE
2468
n
116
ILE
2468
A
ALA
2469
n
117
ALA
2469
A
PHE
2470
n
118
PHE
2470
A
TYR
2471
n
119
TYR
2471
A
LEU
2472
n
120
LEU
2472
A
ALA
2473
n
121
ALA
2473
A
THR
2474
n
122
THR
2474
A
MET
2475
n
123
MET
2475
A
LEU
2476
n
124
LEU
2476
A
LEU
2477
n
125
LEU
2477
A
ASP
2478
n
126
ASP
2478
A
ARG
2479
n
127
ARG
2479
A
GLY
2480
n
128
GLY
2480
A
ILE
2481
n
129
ILE
2481
A
ARG
2482
n
130
ARG
2482
A
PRO
2483
n
131
PRO
2483
A
LYS
2484
n
132
LYS
2484
A
GLY
2485
n
133
GLY
2485
A
LEU
2486
n
134
LEU
2486
A
ILE
2487
n
135
ILE
2487
A
ILE
2488
n
136
ILE
2488
A
LEU
2489
n
137
LEU
2489
A
ASP
2490
n
138
ASP
2490
A
THR
2491
n
139
THR
2491
A
PRO
2492
n
140
PRO
2492
A
PRO
2493
n
141
PRO
2493
A
ARG
2494
n
142
ARG
2494
A
LEU
2495
n
143
LEU
2495
A
n
144
2496
A
n
145
2497
A
n
146
2498
A
n
147
2499
A
n
148
2500
A
n
149
2501
A
n
150
2502
A
n
151
2503
A
n
152
2504
A
n
153
2505
A
n
154
2506
A
n
155
2507
A
n
156
2508
A
n
157
2509
A
n
158
2510
A
LYS
2511
n
159
LYS
2511
A
VAL
2512
n
160
VAL
2512
A
PHE
2513
n
161
PHE
2513
A
ILE
2514
n
162
ILE
2514
A
LEU
2515
n
163
LEU
2515
A
ALA
2516
n
164
ALA
2516
A
MET
2517
n
165
MET
2517
A
GLY
2518
n
166
GLY
2518
A
ILE
2519
n
167
ILE
2519
A
GLY
2520
n
168
GLY
2520
A
GLY
2521
n
169
GLY
2521
A
MET
2522
n
170
MET
2522
A
LEU
2523
n
171
LEU
2523
A
ASP
2524
n
172
ASP
2524
A
GLN
2525
n
173
GLN
2525
A
n
174
2526
A
n
175
2527
A
n
176
2528
A
n
177
2529
A
n
178
2530
A
n
179
2531
A
n
180
2532
A
n
181
2533
A
n
182
2534
A
n
183
2535
A
GLU
2536
n
184
GLU
2536
A
GLU
2537
n
185
GLU
2537
A
ALA
2538
n
186
ALA
2538
A
LYS
2539
n
187
LYS
2539
A
GLN
2540
n
188
GLN
2540
A
LEU
2541
n
189
LEU
2541
A
LEU
2542
n
190
LEU
2542
A
LEU
2543
n
191
LEU
2543
A
ASP
2544
n
192
ASP
2544
A
ARG
2545
n
193
ARG
2545
A
ALA
2546
n
194
ALA
2546
A
LYS
2547
n
195
LYS
2547
A
ASN
2548
n
196
ASN
2548
A
ASP
2549
n
197
ASP
2549
A
PRO
2550
n
198
PRO
2550
A
ARG
2551
n
199
ARG
2551
A
VAL
2552
n
200
VAL
2552
A
SER
2553
n
201
SER
2553
A
ALA
2554
n
202
ALA
2554
A
PHE
2555
n
203
PHE
2555
A
LEU
2556
n
204
LEU
2556
A
SER
2557
n
205
SER
2557
A
GLU
2558
n
206
GLU
2558
A
ASP
2559
n
207
ASP
2559
A
TYR
2560
n
208
TYR
2560
A
LEU
2561
n
209
LEU
2561
A
ASP
2562
n
210
ASP
2562
A
ARG
2563
n
211
ARG
2563
A
PHE
2564
n
212
PHE
2564
A
LEU
2565
n
213
LEU
2565
A
ARG
2566
n
214
ARG
2566
A
LEU
2567
n
215
LEU
2567
A
GLN
2568
n
216
GLN
2568
A
MET
2569
n
217
MET
2569
A
HIS
2570
n
218
HIS
2570
A
GLN
2571
n
219
GLN
2571
A
LEU
2572
n
220
LEU
2572
A
MET
2573
n
221
MET
2573
A
TYR
2574
n
222
TYR
2574
A
SER
2575
n
223
SER
2575
A
ARG
2576
n
224
ARG
2576
A
ASP
2577
n
225
ASP
2577
A
VAL
2578
n
226
VAL
2578
A
VAL
2579
n
227
VAL
2579
A
LEU
2580
n
228
LEU
2580
A
PRO
2581
n
229
PRO
2581
A
GLN
2582
n
230
GLN
2582
A
ARG
2583
n
231
ARG
2583
A
LYS
2584
n
232
LYS
2584
A
LEU
2585
n
233
LEU
2585
A
ASP
2586
n
234
ASP
2586
A
ILE
2587
n
235
ILE
2587
A
PRO
2588
n
236
PRO
2588
A
ILE
2589
n
237
ILE
2589
A
HIS
2590
n
238
HIS
2590
A
VAL
2591
n
239
VAL
2591
A
PHE
2592
n
240
PHE
2592
A
ARG
2593
n
241
ARG
2593
A
THR
2594
n
242
THR
2594
A
LYS
2595
n
243
LYS
2595
A
ASN
2596
n
244
ASN
2596
A
HIS
2597
n
245
HIS
2597
A
ALA
2598
n
246
ALA
2598
A
PRO
2599
n
247
PRO
2599
A
GLU
2600
n
248
GLU
2600
A
VAL
2601
n
249
VAL
2601
A
ALA
2602
n
250
ALA
2602
A
ARG
2603
n
251
ARG
2603
A
LEU
2604
n
252
LEU
2604
A
PHE
2605
n
253
PHE
2605
A
SER
2606
n
254
SER
2606
A
ALA
2607
n
255
ALA
2607
A
TRP
2608
n
256
TRP
2608
A
GLU
2609
n
257
GLU
2609
A
ASN
2610
n
258
ASN
2610
A
TYR
2611
n
259
TYR
2611
A
ALA
2612
n
260
ALA
2612
A
ALA
2613
n
261
ALA
2613
A
GLY
2614
n
262
GLY
2614
A
GLU
2615
n
263
GLU
2615
A
VAL
2616
n
264
VAL
2616
A
THR
2617
n
265
THR
2617
A
PHE
2618
n
266
PHE
2618
A
VAL
2619
n
267
VAL
2619
A
ASP
2620
n
268
ASP
2620
A
ILE
2621
n
269
ILE
2621
A
PRO
2622
n
270
PRO
2622
A
GLY
2623
n
271
GLY
2623
A
ASP
2624
n
272
ASP
2624
A
HIS
2625
n
273
HIS
2625
A
ALA
2626
n
274
ALA
2626
A
THR
2627
n
275
THR
2627
A
MET
2628
n
276
MET
2628
A
LEU
2629
n
277
LEU
2629
A
ARG
2630
n
278
ARG
2630
A
ALA
2631
n
279
ALA
2631
A
PRO
2632
n
280
PRO
2632
A
HIS
2633
n
281
HIS
2633
A
VAL
2634
n
282
VAL
2634
A
SER
2635
n
283
SER
2635
A
GLU
2636
n
284
GLU
2636
A
VAL
2637
n
285
VAL
2637
A
ALA
2638
n
286
ALA
2638
A
GLN
2639
n
287
GLN
2639
A
LEU
2640
n
288
LEU
2640
A
LEU
2641
n
289
LEU
2641
A
ASP
2642
n
290
ASP
2642
A
ARG
2643
n
291
ARG
2643
A
HIS
2644
n
292
HIS
2644
A
CYS
2645
n
293
CYS
2645
A
GLY
2646
n
294
GLY
2646
A
LEU
2647
n
295
LEU
2647
A
PRO
2648
n
296
PRO
2648
A
n
297
2649
A
n
298
2650
A
n
299
2651
A
n
300
2652
A
n
301
2653
A
n
302
2654
A
n
303
2655
A
n
1
3009
B
n
2
3010
B
2OP
3011
n
3
2OP
3011
B
VAL
3012
n
4
VAL
3012
B
1.40649296683
0.445982586261
0.11125870367
1.12130267716
0.0130446160556
1.62917544175
-0.0383682354524
-0.0153669234738
-0.105008310208
0.0670211949655
0.0302742716935
0.192591321298
0.0292006980122
-0.0702798317345
-0.000245106582512
0.264430306598
-0.0851683344578
0.00330180417594
0.283457118476
0.0397785642006
0.371808040879
refined
351.708539507
132.478698021
381.98961583
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
all
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
390
-2
11150
A
DPP
2463
modified residue
A
DPP
111
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
2379
A
N
LYS
27
A
O
GLU
2423
A
O
GLU
71
A
O
HIS
2420
A
O
HIS
68
A
N
ILE
2393
A
N
ILE
41
A
N
GLY
2392
A
N
GLY
40
A
O
TYR
2458
A
O
TYR
106
A
N
ILE
2459
A
N
ILE
107
A
O
ILE
2487
A
O
ILE
135
A
N
ILE
2488
A
N
ILE
136
A
O
HIS
2590
A
O
HIS
238
A
N
VAL
2591
A
N
VAL
239
A
O
THR
2617
A
O
THR
265
1
A
HOH
2759
C
HOH
1
A
CG
ASP
2375
A
CG
ASP
23
1
Y
1
A
OD1
ASP
2375
A
OD1
ASP
23
1
Y
1
A
OD2
ASP
2375
A
OD2
ASP
23
1
Y
1
A
CG
LYS
2511
A
CG
LYS
159
1
Y
1
A
CD
LYS
2511
A
CD
LYS
159
1
Y
1
A
CE
LYS
2511
A
CE
LYS
159
1
Y
1
A
NZ
LYS
2511
A
NZ
LYS
159
1
Y
1
A
CG1
VAL
2512
A
CG1
VAL
160
1
Y
1
A
CG2
VAL
2512
A
CG2
VAL
160
1
Y
1
A
CG
PHE
2513
A
CG
PHE
161
1
Y
1
A
CD1
PHE
2513
A
CD1
PHE
161
1
Y
1
A
CD2
PHE
2513
A
CD2
PHE
161
1
Y
1
A
CE1
PHE
2513
A
CE1
PHE
161
1
Y
1
A
CE2
PHE
2513
A
CE2
PHE
161
1
Y
1
A
CZ
PHE
2513
A
CZ
PHE
161
1
Y
1
A
CG1
ILE
2514
A
CG1
ILE
162
1
Y
1
A
CG2
ILE
2514
A
CG2
ILE
162
1
Y
1
A
CD1
ILE
2514
A
CD1
ILE
162
1
Y
1
A
CG
LEU
2515
A
CG
LEU
163
1
Y
1
A
CD1
LEU
2515
A
CD1
LEU
163
1
Y
1
A
CD2
LEU
2515
A
CD2
LEU
163
1
Y
1
A
CG
MET
2517
A
CG
MET
165
1
Y
1
A
SD
MET
2517
A
SD
MET
165
1
Y
1
A
CE
MET
2517
A
CE
MET
165
1
Y
1
A
CG1
ILE
2519
A
CG1
ILE
167
1
Y
1
A
CG2
ILE
2519
A
CG2
ILE
167
1
Y
1
A
CD1
ILE
2519
A
CD1
ILE
167
1
Y
1
A
CG
LEU
2523
A
CG
LEU
171
1
Y
1
A
CD1
LEU
2523
A
CD1
LEU
171
1
Y
1
A
CD2
LEU
2523
A
CD2
LEU
171
1
Y
1
A
CG
ASP
2524
A
CG
ASP
172
1
Y
1
A
OD1
ASP
2524
A
OD1
ASP
172
1
Y
1
A
OD2
ASP
2524
A
OD2
ASP
172
1
Y
1
A
CG
GLN
2525
A
CG
GLN
173
1
Y
1
A
CD
GLN
2525
A
CD
GLN
173
1
Y
1
A
OE1
GLN
2525
A
OE1
GLN
173
1
Y
1
A
NE2
GLN
2525
A
NE2
GLN
173
1
Y
1
A
CG
GLU
2536
A
CG
GLU
184
1
Y
1
A
CD
GLU
2536
A
CD
GLU
184
1
Y
1
A
OE1
GLU
2536
A
OE1
GLU
184
1
Y
1
A
OE2
GLU
2536
A
OE2
GLU
184
1
Y
1
A
CG
GLU
2537
A
CG
GLU
185
1
Y
1
A
CD
GLU
2537
A
CD
GLU
185
1
Y
1
A
OE1
GLU
2537
A
OE1
GLU
185
1
Y
1
A
OE2
GLU
2537
A
OE2
GLU
185
1
Y
1
A
CG
LYS
2539
A
CG
LYS
187
1
Y
1
A
CD
LYS
2539
A
CD
LYS
187
1
Y
1
A
CE
LYS
2539
A
CE
LYS
187
1
Y
1
A
NZ
LYS
2539
A
NZ
LYS
187
1
Y
1
A
CG
LEU
2541
A
CG
LEU
189
1
Y
1
A
CD1
LEU
2541
A
CD1
LEU
189
1
Y
1
A
CD2
LEU
2541
A
CD2
LEU
189
1
Y
1
A
CG
LEU
2542
A
CG
LEU
190
1
Y
1
A
CD1
LEU
2542
A
CD1
LEU
190
1
Y
1
A
CD2
LEU
2542
A
CD2
LEU
190
1
Y
1
A
CG
LEU
2543
A
CG
LEU
191
1
Y
1
A
CD1
LEU
2543
A
CD1
LEU
191
1
Y
1
A
CD2
LEU
2543
A
CD2
LEU
191
1
Y
1
A
CG
ASP
2544
A
CG
ASP
192
1
Y
1
A
OD1
ASP
2544
A
OD1
ASP
192
1
Y
1
A
OD2
ASP
2544
A
OD2
ASP
192
1
Y
1
A
CG
ARG
2545
A
CG
ARG
193
1
Y
1
A
CD
ARG
2545
A
CD
ARG
193
1
Y
1
A
NE
ARG
2545
A
NE
ARG
193
1
Y
1
A
CZ
ARG
2545
A
CZ
ARG
193
1
Y
1
A
NH1
ARG
2545
A
NH1
ARG
193
1
Y
1
A
NH2
ARG
2545
A
NH2
ARG
193
1
Y
1
A
CG
LYS
2547
A
CG
LYS
195
1
Y
1
A
CD
LYS
2547
A
CD
LYS
195
1
Y
1
A
CE
LYS
2547
A
CE
LYS
195
1
Y
1
A
NZ
LYS
2547
A
NZ
LYS
195
1
Y
1
A
CG
ASN
2548
A
CG
ASN
196
1
Y
1
A
OD1
ASN
2548
A
OD1
ASN
196
1
Y
1
A
ND2
ASN
2548
A
ND2
ASN
196
1
Y
1
A
CG
ARG
2551
A
CG
ARG
199
1
Y
1
A
CD
ARG
2551
A
CD
ARG
199
1
Y
1
A
NE
ARG
2551
A
NE
ARG
199
1
Y
1
A
CZ
ARG
2551
A
CZ
ARG
199
1
Y
1
A
NH1
ARG
2551
A
NH1
ARG
199
1
Y
1
A
NH2
ARG
2551
A
NH2
ARG
199
1
Y
1
A
CG
GLU
2558
A
CG
GLU
206
1
Y
1
A
CD
GLU
2558
A
CD
GLU
206
1
Y
1
A
OE1
GLU
2558
A
OE1
GLU
206
1
Y
1
A
OE2
GLU
2558
A
OE2
GLU
206
1
Y
1
A
CG
ARG
2576
A
CG
ARG
224
1
Y
1
A
CD
ARG
2576
A
CD
ARG
224
1
Y
1
A
NE
ARG
2576
A
NE
ARG
224
1
Y
1
A
CZ
ARG
2576
A
CZ
ARG
224
1
Y
1
A
NH1
ARG
2576
A
NH1
ARG
224
1
Y
1
A
NH2
ARG
2576
A
NH2
ARG
224
1
Y
1
A
CG
LYS
2595
A
CG
LYS
243
1
Y
1
A
CD
LYS
2595
A
CD
LYS
243
1
Y
1
A
CE
LYS
2595
A
CE
LYS
243
1
Y
1
A
NZ
LYS
2595
A
NZ
LYS
243
1
Y
1
A
CG
GLU
2615
A
CG
GLU
263
1
Y
1
A
CD
GLU
2615
A
CD
GLU
263
1
Y
1
A
OE1
GLU
2615
A
OE1
GLU
263
1
Y
1
A
OE2
GLU
2615
A
OE2
GLU
263
1
Y
1
A
MET
2353
A
MET
1
1
Y
1
A
HIS
2354
A
HIS
2
1
Y
1
A
HIS
2355
A
HIS
3
1
Y
1
A
HIS
2356
A
HIS
4
1
Y
1
A
HIS
2357
A
HIS
5
1
Y
1
A
HIS
2358
A
HIS
6
1
Y
1
A
HIS
2359
A
HIS
7
1
Y
1
A
HIS
2360
A
HIS
8
1
Y
1
A
HIS
2361
A
HIS
9
1
Y
1
A
GLU
2362
A
GLU
10
1
Y
1
A
ASN
2363
A
ASN
11
1
Y
1
A
LEU
2364
A
LEU
12
1
Y
1
A
TYR
2365
A
TYR
13
1
Y
1
A
PHE
2366
A
PHE
14
1
Y
1
A
GLN
2367
A
GLN
15
1
Y
1
A
GLY
2368
A
GLY
16
1
Y
1
A
GLY
2369
A
GLY
17
1
Y
1
A
SER
2370
A
SER
18
1
Y
1
A
SER
2371
A
SER
19
1
Y
1
A
THR
2372
A
THR
20
1
Y
1
A
ALA
2373
A
ALA
21
1
Y
1
A
GLY
2374
A
GLY
22
1
Y
1
A
ARG
2386
A
ARG
34
1
Y
1
A
GLY
2387
A
GLY
35
1
Y
1
A
ALA
2429
A
ALA
77
1
Y
1
A
GLY
2430
A
GLY
78
1
Y
1
A
GLY
2496
A
GLY
144
1
Y
1
A
ASP
2497
A
ASP
145
1
Y
1
A
ILE
2498
A
ILE
146
1
Y
1
A
PRO
2499
A
PRO
147
1
Y
1
A
VAL
2500
A
VAL
148
1
Y
1
A
ALA
2501
A
ALA
149
1
Y
1
A
ASP
2502
A
ASP
150
1
Y
1
A
ALA
2503
A
ALA
151
1
Y
1
A
ASP
2504
A
ASP
152
1
Y
1
A
LEU
2505
A
LEU
153
1
Y
1
A
THR
2506
A
THR
154
1
Y
1
A
GLU
2507
A
GLU
155
1
Y
1
A
GLU
2508
A
GLU
156
1
Y
1
A
GLU
2509
A
GLU
157
1
Y
1
A
THR
2510
A
THR
158
1
Y
1
A
ASP
2526
A
ASP
174
1
Y
1
A
ARG
2527
A
ARG
175
1
Y
1
A
ASP
2528
A
ASP
176
1
Y
1
A
ALA
2529
A
ALA
177
1
Y
1
A
LEU
2530
A
LEU
178
1
Y
1
A
LYS
2531
A
LYS
179
1
Y
1
A
ASP
2532
A
ASP
180
1
Y
1
A
LEU
2533
A
LEU
181
1
Y
1
A
PRO
2534
A
PRO
182
1
Y
1
A
TYR
2535
A
TYR
183
1
Y
1
A
SER
2649
A
SER
297
1
Y
1
A
ASP
2650
A
ASP
298
1
Y
1
A
ASP
2651
A
ASP
299
1
Y
1
A
GLY
2652
A
GLY
300
1
Y
1
A
PRO
2653
A
PRO
301
1
Y
1
A
ARG
2654
A
ARG
302
1
Y
1
A
GLY
2655
A
GLY
303
1
Y
1
B
VAD
3009
B
VAD
1
1
Y
1
B
DVA
3010
B
DVA
2
1
Y
1
A
DPP
2463
57.70
-134.01
59.42
0.2141
0.1881
0.1895
1.90
107.69
2658
48054
5.53
99.98
0.1974
1
FREE R-VALUE
1.34
MOLECULAR REPLACEMENT
19.7972
0.9000
1.1100
PDB entry 6ECB
1.90
107.69
106
1904
12
0
1786
0.0170
1856
1.4015
2529
0.0923
285
0.0104
335
11.3396
1092
0.3126
0.2817
1.93
138
2356
100.00
0.2608
0.2452
1.97
137
2341
99.96
0.2365
0.2221
2.01
137
2338
100.00
0.2193
0.2155
2.06
138
2344
100.00
0.2300
0.2040
2.10
137
2342
100.00
0.2199
0.1818
2.16
137
2365
99.96
0.2374
0.1819
2.21
138
2338
100.00
0.1959
0.1826
2.28
137
2346
99.96
0.1999
0.1850
2.35
139
2361
100.00
0.2369
0.1863
2.44
138
2367
99.96
0.1904
0.1930
2.54
138
2369
100.00
0.2309
0.2033
2.65
139
2370
100.00
0.2614
0.2151
2.79
140
2385
100.00
0.2197
0.2224
2.96
139
2385
100.00
0.2233
0.1943
3.19
141
2408
100.00
0.1875
0.1813
3.52
142
2416
99.96
0.2057
0.1587
4.02
142
2433
100.00
0.1901
0.1488
5.07
145
2472
99.96
0.2229
0.2116
107.86
156
2660
99.93
37.63
1.9
107.69
6ECD
48063
1
.123
.02
.124
1
23.3
37.2
100
1.9
1.94
3071
1
refinement
PHENIX
1.13_2998
refinement
PHENIX
1.13_2998
data reduction
DIALS
data scaling
Aimless
phasing
PHASER
207
cubic
P 4 3 2
P 4 2 3
x,y,z
x,-z,y
x,z,-y
z,y,-x
-z,y,x
-y,x,z
y,-x,z
z,x,y
y,z,x
-y,-z,x
z,-x,-y
-y,z,-x
-z,-x,y
-z,x,-y
y,-z,-x
x,-y,-z
-x,y,-z
-x,-y,z
y,x,-z
-y,-x,-z
z,-y,x
-z,-y,-x
-x,z,y
-x,-z,-y
N
Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a tetradepsipeptide
1
N
N
2
N
N
3
N
N
A
VAL
2403
A
VAL
51
HELX_P
A
GLY
2405
A
GLY
53
5
AA1
3
A
TYR
2406
A
TYR
54
HELX_P
A
LEU
2413
A
LEU
61
1
AA2
8
A
SER
2437
A
SER
85
HELX_P
A
ALA
2450
A
ALA
98
1
AA3
14
A
DPP
2463
A
DPP
111
HELX_P
A
ARG
2479
A
ARG
127
1
AA4
17
A
VAL
2512
A
VAL
160
HELX_P
A
GLY
2518
A
GLY
166
1
AA5
7
A
GLY
2518
A
GLY
166
HELX_P
A
LEU
2523
A
LEU
171
1
AA6
6
A
GLU
2537
A
GLU
185
HELX_P
A
ASN
2548
A
ASN
196
1
AA7
12
A
SER
2557
A
SER
205
HELX_P
A
MET
2573
A
MET
221
1
AA8
17
A
SER
2575
A
SER
223
HELX_P
A
LEU
2580
A
LEU
228
1
AA9
6
A
ALA
2598
A
ALA
246
HELX_P
A
ARG
2603
A
ARG
251
1
AB1
6
A
LEU
2604
A
LEU
252
HELX_P
A
ALA
2612
A
ALA
260
5
AB2
9
A
PRO
2632
A
PRO
280
HELX_P
A
GLY
2646
A
GLY
294
1
AB3
15
covale
1.317
both
A
HIS
2462
A
C
HIS
110
1_555
A
DPP
2463
A
N
DPP
111
1_555
covale
1.322
both
A
DPP
2463
A
C
DPP
111
1_555
A
LEU
2464
A
N
LEU
112
1_555
covale
1.341
one
A
DPP
2463
A
NG
DPP
111
1_555
B
VAL
3012
B
C
VAL
4
1_555
covale
1.331
both
B
2OP
3011
B
C
2OP
3
1_555
B
VAL
3012
B
N
VAL
4
1_555
HYDROLASE
thioesterase, thioesterase domain, NRPS, non-ribosomal peptide synthetase, nonribosomal peptide synthetase, valinomycin, HYDROLASE, depsipeptide, unnatural amino acid, 2, 3-diaminopropionic acid
A
ALA
2631
A
ALA
279
1
A
PRO
2632
A
PRO
280
-1.13
Q1PSF3_9ACTN
UNP
1
2368
Q1PSF3
GGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSD
SAAGVAGDGVYIGGHSLGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDR
DALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSA
WENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG
6ECD
PDB
2
1
6ECD
2368
2655
6ECD
2368
2655
Q1PSF3
A
1
16
303
3009
3012
6ECD
3009
3012
6ECD
B
2
1
4
1
expression tag
MET
2353
6ECD
A
Q1PSF3
UNP
1
1
expression tag
HIS
2354
6ECD
A
Q1PSF3
UNP
2
1
expression tag
HIS
2355
6ECD
A
Q1PSF3
UNP
3
1
expression tag
HIS
2356
6ECD
A
Q1PSF3
UNP
4
1
expression tag
HIS
2357
6ECD
A
Q1PSF3
UNP
5
1
expression tag
HIS
2358
6ECD
A
Q1PSF3
UNP
6
1
expression tag
HIS
2359
6ECD
A
Q1PSF3
UNP
7
1
expression tag
HIS
2360
6ECD
A
Q1PSF3
UNP
8
1
expression tag
HIS
2361
6ECD
A
Q1PSF3
UNP
9
1
expression tag
GLU
2362
6ECD
A
Q1PSF3
UNP
10
1
expression tag
ASN
2363
6ECD
A
Q1PSF3
UNP
11
1
expression tag
LEU
2364
6ECD
A
Q1PSF3
UNP
12
1
expression tag
TYR
2365
6ECD
A
Q1PSF3
UNP
13
1
expression tag
PHE
2366
6ECD
A
Q1PSF3
UNP
14
1
expression tag
GLN
2367
6ECD
A
Q1PSF3
UNP
15
7
anti-parallel
parallel
parallel
parallel
parallel
parallel
A
LYS
2379
A
LYS
27
A
ARG
2382
A
ARG
30
A
ILE
2419
A
ILE
67
A
GLU
2423
A
GLU
71
A
GLY
2392
A
GLY
40
A
ALA
2396
A
ALA
44
A
VAL
2457
A
VAL
105
A
HIS
2462
A
HIS
110
A
GLY
2485
A
GLY
133
A
LEU
2489
A
LEU
137
A
ILE
2589
A
ILE
237
A
ARG
2593
A
ARG
241
A
VAL
2616
A
VAL
264
A
ASP
2620
A
ASP
268
207
P 4 3 2
P 4 2 3