0.012642
0.000000
0.000000
0.000000
0.006827
0.000000
0.000000
0.000000
0.005263
0.00000
0.00000
0.00000
5.96793
14.89577
0.0
1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
0.99627
14.84254
0.0
1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
6.96715
11.43723
0.0
1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
7.96527
9.05267
0.0
1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
8.95260
12.67477
0.0
1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
15.91112
10.84690
0.0
1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
0000-0003-4388-4697
Cosmanescu, F.
0000-0001-9943-8819
Shapiro, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
79.103
146.476
189.992
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
R
C
N
82
S
C
N
83
S
C
N
84
S
C
N
85
R
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
R
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
S
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
R
C
N
120
S
C
N
121
R
C
N
122
S
C
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
Y
196
N
C
Y
197
N
N
Y
198
N
C
Y
199
N
C
Y
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
S
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
S
C
N
285
S
C
N
286
S
C
N
287
S
C
N
288
R
C
N
289
N
C
N
290
N
O
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
S
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
R
C
N
329
R
C
N
330
R
C
N
331
S
C
N
332
R
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
N
N
337
N
O
N
338
N
O
N
339
N
O
N
340
N
O
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
R
C
N
434
N
O
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
N
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
N
N
474
S
C
N
475
N
C
N
476
N
O
N
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
N
484
N
O
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
N
N
498
S
C
N
499
N
C
N
500
N
O
N
501
N
C
N
502
N
C
N
503
N
C
N
504
N
O
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
sing
Y
194
N
doub
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
sing
Y
449
N
doub
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
Y
468
N
doub
Y
469
N
sing
Y
470
N
sing
N
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
doub
N
475
N
sing
Y
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
US
Neuron
NERNET
2038
1097-4199
100
1385
10.1016/j.neuron.2018.10.046
30467080
Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins.
2018
10.2210/pdb6efz/pdb
pdb_00006efz
100
1
PIXEL
2016-04-25
DECTRIS PILATUS 6M-F
Cryo-cooled double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
.979
1.0
24-ID-C
APS
.979
SYNCHROTRON
APS BEAMLINE 24-ID-C
34110.230
Dpr-interacting protein theta
UNP residues 128-423
1
man
polymer
1056.964
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
732.682
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
59.044
ACETATE ION
2
man
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
man
non-polymer
18.015
water
2
nat
water
DIP-Theta, FI23919p1
no
no
DLPKFGELLQNVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDK
GWYMCQINTDPMKSQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNGAEAVAYN
GSFLTIAKVNRLNMGAYLCIASNGIPPTVSKRVMLIVHFPPMIWIQNQLVGAALTQNITLECQSEAYPKSINYWMKNDTI
IVPGERFVPETFESGYKITMRLTIYEVDIQDFGAYRCVAKNSLGDTDGAIKLYHIPHHHHHH
DLPKFGELLQNVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDK
GWYMCQINTDPMKSQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNGAEAVAYN
GSFLTIAKVNRLNMGAYLCIASNGIPPTVSKRVMLIVHFPPMIWIQNQLVGAALTQNITLECQSEAYPKSINYWMKNDTI
IVPGERFVPETFESGYKITMRLTIYEVDIQDFGAYRCVAKNSLGDTDGAIKLYHIPHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fruit fly
Human
sample
1
302
DIP-theta, 31646, CG14008, CG14009, CG31646-RA, CT33566, Dmel\CG31646, CG31646, Dmel_CG31646
7227
Drosophila melanogaster
9606
Homo sapiens
Biological sequence
1
8.07
84.75
VAPOR DIFFUSION, HANGING DROP
12% PEG4000, 0.3 M americium sulfate, 20% glycerol, 0.08 M sodium acetate, pH 4.6, cryoprotectant: 30% glycerol
295
citation
citation_author
citation
chem_comp
pdbx_audit_support
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Data collection
Database references
Data collection
Database references
Author supporting evidence
Data collection
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2018-11-28
1
1
2018-12-19
1
2
2019-01-02
1
3
2020-01-01
2
0
2020-07-29
2
1
2023-10-11
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.journal_volume
_citation.page_first
_chem_comp.type
_pdbx_audit_support.funding_organization
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
A
NAG
440
n
B
NAG
1
A
NAG
441
n
B
NAG
2
A
BMA
442
n
B
BMA
3
A
MAN
443
n
B
MAN
4
A
MAN
444
n
B
MAN
5
A
FUC
445
n
B
FUC
6
A
NAG
446
n
C
NAG
1
A
NAG
447
n
C
NAG
2
A
BMA
448
n
C
BMA
3
A
FUC
449
n
C
FUC
4
DManpb
b-D-mannopyranose
b-D-Manp
Man
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
N
RCSB
Y
RCSB
2018-08-17
REL
REL
oligosaccharide
oligosaccharide
DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-3-4/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}}
2
PDB-CARE
LINUCS
DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-1-2-3/a4-b1_a6-d1_b4-c1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}[(6+1)][a-L-Fucp]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
BMA
NAG
3
2
2
O1
HO4
sing
C1
O3
MAN
BMA
4
3
2
O1
HO3
sing
C1
O6
MAN
BMA
5
3
2
O1
HO6
sing
C1
O6
FUC
NAG
6
1
2
O1
HO6
sing
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
BMA
NAG
3
2
3
O1
HO4
sing
C1
O6
FUC
NAG
4
1
3
O1
HO6
sing
n
n
n
n
n
n
n
n
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
ACT
ACETATE ION
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
6EG1
PDB entry 6EG1
PDB
experimental model
NAG
450
4
NAG
NAG
511
A
ACT
1
5
ACT
ACT
512
A
ACT
2
5
ACT
ACT
513
A
PEG
1
6
PEG
PEG
514
A
HOH
1
7
HOH
HOH
601
A
HOH
2
7
HOH
HOH
602
A
ASP
128
n
1
ASP
128
A
LEU
129
n
2
LEU
129
A
PRO
130
n
3
PRO
130
A
LYS
131
n
4
LYS
131
A
PHE
132
n
5
PHE
132
A
GLY
133
n
6
GLY
133
A
GLU
134
n
7
GLU
134
A
LEU
135
n
8
LEU
135
A
LEU
136
n
9
LEU
136
A
GLN
137
n
10
GLN
137
A
ASN
138
n
11
ASN
138
A
VAL
139
n
12
VAL
139
A
THR
140
n
13
THR
140
A
VAL
141
n
14
VAL
141
A
PRO
142
n
15
PRO
142
A
VAL
143
n
16
VAL
143
A
SER
144
n
17
SER
144
A
ARG
145
n
18
ARG
145
A
GLU
146
n
19
GLU
146
A
ALA
147
n
20
ALA
147
A
VAL
148
n
21
VAL
148
A
LEU
149
n
22
LEU
149
A
GLN
150
n
23
GLN
150
A
CYS
151
n
24
CYS
151
A
VAL
152
n
25
VAL
152
A
VAL
153
n
26
VAL
153
A
ASP
154
n
27
ASP
154
A
ASN
155
n
28
ASN
155
A
LEU
156
n
29
LEU
156
A
GLN
157
n
30
GLN
157
A
THR
158
n
31
THR
158
A
TYR
159
n
32
TYR
159
A
LYS
160
n
33
LYS
160
A
ILE
161
n
34
ILE
161
A
ALA
162
n
35
ALA
162
A
TRP
163
n
36
TRP
163
A
LEU
164
n
37
LEU
164
A
ARG
165
n
38
ARG
165
A
VAL
166
n
39
VAL
166
A
ASP
167
n
40
ASP
167
A
THR
168
n
41
THR
168
A
GLN
169
n
42
GLN
169
A
THR
170
n
43
THR
170
A
ILE
171
n
44
ILE
171
A
LEU
172
n
45
LEU
172
A
THR
173
n
46
THR
173
A
ILE
174
n
47
ILE
174
A
GLN
175
n
48
GLN
175
A
ASN
176
n
49
ASN
176
A
HIS
177
n
50
HIS
177
A
VAL
178
n
51
VAL
178
A
ILE
179
n
52
ILE
179
A
THR
180
n
53
THR
180
A
LYS
181
n
54
LYS
181
A
ASN
182
n
55
ASN
182
A
HIS
183
n
56
HIS
183
A
ARG
184
n
57
ARG
184
A
MET
185
n
58
MET
185
A
SER
186
n
59
SER
186
A
ILE
187
n
60
ILE
187
A
THR
188
n
61
THR
188
A
HIS
189
n
62
HIS
189
A
ALA
190
n
63
ALA
190
A
GLU
191
n
64
GLU
191
A
LYS
192
n
65
LYS
192
A
ARG
193
n
66
ARG
193
A
ALA
194
n
67
ALA
194
A
TRP
195
n
68
TRP
195
A
ILE
196
n
69
ILE
196
A
LEU
197
n
70
LEU
197
A
ARG
198
n
71
ARG
198
A
ILE
199
n
72
ILE
199
A
ARG
200
n
73
ARG
200
A
ASP
201
n
74
ASP
201
A
VAL
202
n
75
VAL
202
A
LYS
203
n
76
LYS
203
A
GLU
204
n
77
GLU
204
A
SER
205
n
78
SER
205
A
ASP
206
n
79
ASP
206
A
LYS
207
n
80
LYS
207
A
GLY
208
n
81
GLY
208
A
TRP
209
n
82
TRP
209
A
TYR
210
n
83
TYR
210
A
MET
211
n
84
MET
211
A
CYS
212
n
85
CYS
212
A
GLN
213
n
86
GLN
213
A
ILE
214
n
87
ILE
214
A
ASN
215
n
88
ASN
215
A
THR
216
n
89
THR
216
A
ASP
217
n
90
ASP
217
A
PRO
218
n
91
PRO
218
A
MET
219
n
92
MET
219
A
LYS
220
n
93
LYS
220
A
SER
221
n
94
SER
221
A
GLN
222
n
95
GLN
222
A
VAL
223
n
96
VAL
223
A
GLY
224
n
97
GLY
224
A
TYR
225
n
98
TYR
225
A
LEU
226
n
99
LEU
226
A
ASP
227
n
100
ASP
227
A
VAL
228
n
101
VAL
228
A
VAL
229
n
102
VAL
229
A
VAL
230
n
103
VAL
230
A
PRO
231
n
104
PRO
231
A
PRO
232
n
105
PRO
232
A
ASP
233
n
106
ASP
233
A
ILE
234
n
107
ILE
234
A
LEU
235
n
108
LEU
235
A
ASP
236
n
109
ASP
236
A
TYR
237
n
110
TYR
237
A
PRO
238
n
111
PRO
238
A
THR
239
n
112
THR
239
A
SER
240
n
113
SER
240
A
THR
241
n
114
THR
241
A
ASP
242
n
115
ASP
242
A
MET
243
n
116
MET
243
A
VAL
244
n
117
VAL
244
A
ILE
245
n
118
ILE
245
A
ARG
246
n
119
ARG
246
A
GLU
247
n
120
GLU
247
A
GLY
248
n
121
GLY
248
A
SER
249
n
122
SER
249
A
ASN
250
n
123
ASN
250
A
VAL
251
n
124
VAL
251
A
THR
252
n
125
THR
252
A
LEU
253
n
126
LEU
253
A
LYS
254
n
127
LYS
254
A
CYS
255
n
128
CYS
255
A
ALA
256
n
129
ALA
256
A
ALA
257
n
130
ALA
257
A
THR
258
n
131
THR
258
A
GLY
259
n
132
GLY
259
A
SER
260
n
133
SER
260
A
PRO
261
n
134
PRO
261
A
THR
262
n
135
THR
262
A
PRO
263
n
136
PRO
263
A
THR
264
n
137
THR
264
A
ILE
265
n
138
ILE
265
A
THR
266
n
139
THR
266
A
TRP
267
n
140
TRP
267
A
ARG
268
n
141
ARG
268
A
ARG
269
n
142
ARG
269
A
GLU
270
n
143
GLU
270
A
GLY
271
n
144
GLY
271
A
GLY
272
n
145
GLY
272
A
GLU
273
n
146
GLU
273
A
LEU
274
n
147
LEU
274
A
ILE
275
n
148
ILE
275
A
PRO
276
n
149
PRO
276
A
LEU
277
n
150
LEU
277
A
PRO
278
n
151
PRO
278
A
ASN
279
n
152
ASN
279
A
GLY
280
n
153
GLY
280
A
ALA
281
n
154
ALA
281
A
GLU
282
n
155
GLU
282
A
ALA
283
n
156
ALA
283
A
VAL
284
n
157
VAL
284
A
ALA
285
n
158
ALA
285
A
TYR
286
n
159
TYR
286
A
ASN
287
n
160
ASN
287
A
GLY
288
n
161
GLY
288
A
SER
289
n
162
SER
289
A
PHE
290
n
163
PHE
290
A
LEU
291
n
164
LEU
291
A
THR
292
n
165
THR
292
A
ILE
293
n
166
ILE
293
A
ALA
294
n
167
ALA
294
A
LYS
295
n
168
LYS
295
A
VAL
296
n
169
VAL
296
A
ASN
297
n
170
ASN
297
A
ARG
298
n
171
ARG
298
A
LEU
299
n
172
LEU
299
A
ASN
300
n
173
ASN
300
A
MET
301
n
174
MET
301
A
GLY
302
n
175
GLY
302
A
ALA
303
n
176
ALA
303
A
TYR
304
n
177
TYR
304
A
LEU
305
n
178
LEU
305
A
CYS
306
n
179
CYS
306
A
ILE
307
n
180
ILE
307
A
ALA
308
n
181
ALA
308
A
SER
309
n
182
SER
309
A
ASN
310
n
183
ASN
310
A
GLY
311
n
184
GLY
311
A
ILE
312
n
185
ILE
312
A
PRO
313
n
186
PRO
313
A
PRO
314
n
187
PRO
314
A
THR
315
n
188
THR
315
A
VAL
316
n
189
VAL
316
A
SER
317
n
190
SER
317
A
LYS
318
n
191
LYS
318
A
ARG
319
n
192
ARG
319
A
VAL
320
n
193
VAL
320
A
MET
321
n
194
MET
321
A
LEU
322
n
195
LEU
322
A
ILE
323
n
196
ILE
323
A
VAL
324
n
197
VAL
324
A
HIS
325
n
198
HIS
325
A
PHE
326
n
199
PHE
326
A
PRO
327
n
200
PRO
327
A
PRO
328
n
201
PRO
328
A
MET
329
n
202
MET
329
A
ILE
330
n
203
ILE
330
A
TRP
331
n
204
TRP
331
A
ILE
332
n
205
ILE
332
A
GLN
333
n
206
GLN
333
A
ASN
334
n
207
ASN
334
A
GLN
335
n
208
GLN
335
A
LEU
336
n
209
LEU
336
A
VAL
337
n
210
VAL
337
A
GLY
338
n
211
GLY
338
A
ALA
339
n
212
ALA
339
A
ALA
340
n
213
ALA
340
A
LEU
341
n
214
LEU
341
A
THR
342
n
215
THR
342
A
GLN
343
n
216
GLN
343
A
ASN
344
n
217
ASN
344
A
ILE
345
n
218
ILE
345
A
THR
346
n
219
THR
346
A
LEU
347
n
220
LEU
347
A
GLU
348
n
221
GLU
348
A
CYS
349
n
222
CYS
349
A
GLN
350
n
223
GLN
350
A
SER
351
n
224
SER
351
A
GLU
352
n
225
GLU
352
A
ALA
353
n
226
ALA
353
A
TYR
354
n
227
TYR
354
A
PRO
355
n
228
PRO
355
A
LYS
356
n
229
LYS
356
A
SER
357
n
230
SER
357
A
ILE
358
n
231
ILE
358
A
ASN
359
n
232
ASN
359
A
TYR
360
n
233
TYR
360
A
TRP
361
n
234
TRP
361
A
MET
362
n
235
MET
362
A
LYS
363
n
236
LYS
363
A
ASN
364
n
237
ASN
364
A
ASP
365
n
238
ASP
365
A
THR
366
n
239
THR
366
A
ILE
367
n
240
ILE
367
A
ILE
368
n
241
ILE
368
A
VAL
369
n
242
VAL
369
A
PRO
370
n
243
PRO
370
A
GLY
371
n
244
GLY
371
A
GLU
372
n
245
GLU
372
A
ARG
373
n
246
ARG
373
A
PHE
374
n
247
PHE
374
A
VAL
375
n
248
VAL
375
A
PRO
376
n
249
PRO
376
A
GLU
377
n
250
GLU
377
A
THR
378
n
251
THR
378
A
PHE
379
n
252
PHE
379
A
GLU
380
n
253
GLU
380
A
SER
381
n
254
SER
381
A
GLY
382
n
255
GLY
382
A
TYR
383
n
256
TYR
383
A
LYS
384
n
257
LYS
384
A
ILE
385
n
258
ILE
385
A
THR
386
n
259
THR
386
A
MET
387
n
260
MET
387
A
ARG
388
n
261
ARG
388
A
LEU
389
n
262
LEU
389
A
THR
390
n
263
THR
390
A
ILE
391
n
264
ILE
391
A
TYR
392
n
265
TYR
392
A
GLU
393
n
266
GLU
393
A
VAL
394
n
267
VAL
394
A
ASP
395
n
268
ASP
395
A
ILE
396
n
269
ILE
396
A
GLN
397
n
270
GLN
397
A
ASP
398
n
271
ASP
398
A
PHE
399
n
272
PHE
399
A
GLY
400
n
273
GLY
400
A
ALA
401
n
274
ALA
401
A
TYR
402
n
275
TYR
402
A
ARG
403
n
276
ARG
403
A
CYS
404
n
277
CYS
404
A
VAL
405
n
278
VAL
405
A
ALA
406
n
279
ALA
406
A
LYS
407
n
280
LYS
407
A
ASN
408
n
281
ASN
408
A
SER
409
n
282
SER
409
A
LEU
410
n
283
LEU
410
A
GLY
411
n
284
GLY
411
A
ASP
412
n
285
ASP
412
A
THR
413
n
286
THR
413
A
ASP
414
n
287
ASP
414
A
GLY
415
n
288
GLY
415
A
ALA
416
n
289
ALA
416
A
ILE
417
n
290
ILE
417
A
LYS
418
n
291
LYS
418
A
LEU
419
n
292
LEU
419
A
TYR
420
n
293
TYR
420
A
HIS
421
n
294
HIS
421
A
ILE
422
n
295
ILE
422
A
PRO
423
n
296
PRO
423
A
n
297
424
A
n
298
425
A
n
299
426
A
n
300
427
A
n
301
428
A
n
302
429
A
author_and_software_defined_assembly
PISA
2
dimeric
equilibrium centrifugation
7780
60
33750
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
-x+1/2,y,-z
crystal symmetry operation
39.5515000000
0.0000000000
0.0000000000
A
N
LYS
131
A
N
LYS
4
A
O
ASP
154
A
O
ASP
27
A
N
LEU
149
A
N
LEU
22
A
O
LEU
197
A
O
LEU
70
A
O
ARG
198
A
O
ARG
71
A
N
SER
186
A
N
SER
59
A
N
VAL
139
A
N
VAL
12
A
O
ASP
227
A
O
ASP
100
A
O
GLY
224
A
O
GLY
97
A
N
TYR
210
A
N
TYR
83
A
O
GLN
213
A
O
GLN
86
A
N
ALA
162
A
N
ALA
35
A
N
TRP
163
A
N
TRP
36
A
O
LEU
172
A
O
LEU
45
A
N
ILE
174
A
N
ILE
47
A
O
HIS
177
A
O
HIS
50
A
N
VAL
139
A
N
VAL
12
A
O
ASP
227
A
O
ASP
100
A
N
ASP
233
A
N
ASP
106
A
O
THR
258
A
O
THR
131
A
N
MET
243
A
N
MET
116
A
O
ILE
323
A
O
ILE
196
A
N
TRP
331
A
N
TRP
204
A
O
GLN
350
A
O
GLN
223
A
N
SER
351
A
N
SER
224
A
O
ILE
385
A
O
ILE
258
A
O
ILE
391
A
O
ILE
264
A
N
ILE
345
A
N
ILE
218
A
O
TYR
286
A
O
TYR
159
A
N
TRP
267
A
N
TRP
140
A
N
THR
264
A
N
THR
137
A
O
SER
309
A
O
SER
182
A
N
CYS
306
A
N
CYS
179
A
O
LYS
318
A
O
LYS
191
A
N
TRP
331
A
N
TRP
204
A
O
GLN
350
A
O
GLN
223
A
N
SER
351
A
N
SER
224
A
O
ILE
385
A
O
ILE
258
A
O
ARG
388
A
O
ARG
261
A
N
GLU
377
A
N
GLU
250
A
N
LEU
253
A
N
LEU
126
A
O
LEU
291
A
O
LEU
164
A
N
ILE
275
A
N
ILE
148
A
O
ALA
283
A
O
ALA
156
A
N
ALA
339
A
N
ALA
212
A
O
TYR
420
A
O
TYR
293
A
O
ILE
417
A
O
ILE
290
A
N
TYR
402
A
N
TYR
275
A
O
VAL
405
A
O
VAL
278
A
N
TYR
360
A
N
TYR
233
1
A
HIS
424
A
HIS
297
1
Y
1
A
HIS
425
A
HIS
298
1
Y
1
A
HIS
426
A
HIS
299
1
Y
1
A
HIS
427
A
HIS
300
1
Y
1
A
HIS
428
A
HIS
301
1
Y
1
A
HIS
429
A
HIS
302
1
Y
1
A
SER
144
72.57
-14.29
1
A
ARG
145
-76.74
-169.74
1
A
ASN
155
47.89
74.81
1
A
GLN
157
50.03
-126.81
1
A
TYR
159
-68.78
-178.38
1
A
LEU
164
-170.45
132.97
1
A
LEU
172
-122.31
-63.77
1
A
GLN
175
60.77
-137.86
1
A
ILE
179
-97.06
-64.97
1
A
ASN
182
-57.96
102.58
1
A
PRO
231
-58.70
178.20
1
A
THR
241
-108.03
-167.89
1
A
LYS
295
44.42
72.50
1
A
THR
342
79.67
-0.29
1
A
LYS
356
-38.70
145.98
1
A
ASP
365
72.05
31.29
1
A
GLU
372
65.99
-46.77
1
A
GLU
393
49.90
79.25
0.2663
0.2427
0.2440
3.499
19.925
705
14088
5.00
98.90
0.56
1
FREE R-VALUE
1.34
MOLECULAR REPLACEMENT
31.81
0.90
1.11
PDB entry 6EG1
3.499
19.925
2
2485
149
0
2334
0.003
2546
0.637
3486
9.780
1543
0.055
433
0.004
423
0.3958
0.3242
3.7677
136
2581
96.00
0.3018
0.2724
4.1438
139
2636
100.00
0.2557
0.2362
4.7364
141
2666
99.00
0.2688
0.2400
5.9410
142
2704
100.00
0.2383
0.2254
19.9258
147
2796
99.00
135.923327998
3.499
116
6EFZ
14202
.06
1
.06
4.3
99.1
.556
3.499
3.83
3287
1
refinement
PHENIX
(1.10.1_2155: ???)
data reduction
XDS
data scaling
Aimless
phasing
PHASER
24
orthorhombic
I 21 21 21
I 2b 2c
x,y,z
x,-y,-z+1/2
-x+1/2,y,-z
-x,-y+1/2,z
x+1/2,y+1/2,z+1/2
x+1/2,-y+1/2,-z+1
-x+1,y+1/2,-z+1/2
-x+1/2,-y+1,z+1/2
N
Crystal Structure of DIP-Theta Ig1-3
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
A
LYS
203
A
LYS
76
HELX_P
A
LYS
207
A
LYS
80
5
AA1
5
disulf
2.030
A
CYS
151
A
SG
CYS
24
1_555
A
CYS
212
A
SG
CYS
85
1_555
disulf
2.024
A
CYS
255
A
SG
CYS
128
1_555
A
CYS
306
A
SG
CYS
179
1_555
disulf
2.035
A
CYS
349
A
SG
CYS
222
1_555
A
CYS
404
A
SG
CYS
277
1_555
covale
1.428
one
N-Glycosylation
A
ASN
138
A
ND2
ASN
11
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.438
one
N-Glycosylation
A
ASN
250
A
ND2
ASN
123
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.448
one
N-Glycosylation
A
ASN
287
A
ND2
ASN
160
1_555
A
NAG
511
D
C1
NAG
1_555
covale
1.423
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.440
both
B
NAG
1
B
O6
NAG
1_555
B
FUC
6
B
C1
FUC
1_555
covale
1.440
both
B
NAG
2
B
O4
NAG
1_555
B
BMA
3
B
C1
BMA
1_555
covale
1.446
both
B
BMA
3
B
O3
BMA
1_555
B
MAN
4
B
C1
MAN
1_555
covale
1.450
both
B
BMA
3
B
O6
BMA
1_555
B
MAN
5
B
C1
MAN
1_555
covale
1.441
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.449
both
C
NAG
1
C
O6
NAG
1_555
C
FUC
4
C
C1
FUC
1_555
covale
1.443
both
C
NAG
2
C
O4
NAG
1_555
C
BMA
3
C
C1
BMA
1_555
CELL ADHESION
Immunoglobulin Super-Family, Synaptic specification, nervous system development, cell-surface protein, CELL ADHESION
A
ASP
217
A
ASP
90
1
A
PRO
218
A
PRO
91
-2.90
A
TYR
237
A
TYR
110
1
A
PRO
238
A
PRO
111
-1.72
A
SER
260
A
SER
133
1
A
PRO
261
A
PRO
134
-0.44
A
PRO
313
A
PRO
186
1
A
PRO
314
A
PRO
187
-2.60
A
TYR
354
A
TYR
227
1
A
PRO
355
A
PRO
228
6.86
Q9VMN6_DROME
UNP
1
128
Q9VMN6
DLPKFGELLQNVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDK
GWYMCQINTDPMKSQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNGAEAVAYN
GSFLTIAKVNRLNMGAYLCIASNGIPPTVSKRVMLIVHFPPMIWIQNQLVGAALTQNITLECQSEAYPKSINYWMKNDTI
IVPGERFVPETFESGYKITMRLTIYEVDIQDFGAYRCVAKNSLGDTDGAIKLYHIP
128
423
6EFZ
128
423
Q9VMN6
A
1
1
296
1
expression tag
HIS
424
6EFZ
A
Q9VMN6
UNP
297
1
expression tag
HIS
425
6EFZ
A
Q9VMN6
UNP
298
1
expression tag
HIS
426
6EFZ
A
Q9VMN6
UNP
299
1
expression tag
HIS
427
6EFZ
A
Q9VMN6
UNP
300
1
expression tag
HIS
428
6EFZ
A
Q9VMN6
UNP
301
1
expression tag
HIS
429
6EFZ
A
Q9VMN6
UNP
302
4
6
3
5
7
2
2
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
LYS
131
A
LYS
4
A
PHE
132
A
PHE
5
A
ALA
147
A
ALA
20
A
ASP
154
A
ASP
27
A
ALA
194
A
ALA
67
A
ILE
199
A
ILE
72
A
MET
185
A
MET
58
A
THR
188
A
THR
61
A
VAL
139
A
VAL
12
A
PRO
142
A
PRO
15
A
LYS
220
A
LYS
93
A
ILE
234
A
ILE
107
A
GLY
208
A
GLY
81
A
ILE
214
A
ILE
87
A
ILE
161
A
ILE
34
A
ARG
165
A
ARG
38
A
THR
170
A
THR
43
A
ILE
174
A
ILE
47
A
HIS
177
A
HIS
50
A
VAL
178
A
VAL
51
A
VAL
139
A
VAL
12
A
PRO
142
A
PRO
15
A
LYS
220
A
LYS
93
A
ILE
234
A
ILE
107
A
ALA
257
A
ALA
130
A
SER
260
A
SER
133
A
MET
243
A
MET
116
A
ARG
246
A
ARG
119
A
VAL
316
A
VAL
189
A
TRP
331
A
TRP
204
A
GLN
350
A
GLN
223
A
TYR
354
A
TYR
227
A
LYS
384
A
LYS
257
A
ILE
391
A
ILE
264
A
ILE
345
A
ILE
218
A
GLU
348
A
GLU
221
A
TYR
286
A
TYR
159
A
ASN
287
A
ASN
160
A
THR
264
A
THR
137
A
ARG
269
A
ARG
142
A
GLY
302
A
GLY
175
A
SER
309
A
SER
182
A
VAL
316
A
VAL
189
A
TRP
331
A
TRP
204
A
GLN
350
A
GLN
223
A
TYR
354
A
TYR
227
A
LYS
384
A
LYS
257
A
ILE
391
A
ILE
264
A
PHE
374
A
PHE
247
A
SER
381
A
SER
254
A
VAL
251
A
VAL
124
A
LEU
253
A
LEU
126
A
LEU
291
A
LEU
164
A
ILE
293
A
ILE
166
A
ILE
275
A
ILE
148
A
PRO
276
A
PRO
149
A
GLU
282
A
GLU
155
A
ALA
283
A
ALA
156
A
LEU
336
A
LEU
209
A
ALA
339
A
ALA
212
A
GLY
411
A
GLY
284
A
HIS
421
A
HIS
294
A
GLY
400
A
GLY
273
A
ASN
408
A
ASN
281
A
ILE
358
A
ILE
231
A
LYS
363
A
LYS
236
24
I 21 21 21