data_6FHD # _entry.id 6FHD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6FHD pdb_00006fhd 10.2210/pdb6fhd/pdb WWPDB D_1200008323 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6GFR unspecified PDB . 6GF4 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6FHD _pdbx_database_status.recvd_initial_deposition_date 2018-01-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Landau, M.' 1 0000-0002-1743-3430 'Salinas, N.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 3512 _citation.page_last 3512 _citation.title 'Extreme amyloid polymorphism in Staphylococcus aureus virulent PSM alpha peptides.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-05490-0 _citation.pdbx_database_id_PubMed 30158633 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salinas, N.' 1 0000-0002-3511-2243 primary 'Colletier, J.P.' 2 ? primary 'Moshe, A.' 3 ? primary 'Landau, M.' 4 0000-0002-1743-3430 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 121.890 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6FHD _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.030 _cell.length_a_esd ? _cell.length_b 11.730 _cell.length_b_esd ? _cell.length_c 24.610 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Psm alpha-3' 831.054 2 ? ? 'LFKFFK from PSMalpha3 (residues 7-12) secreted by S. aureus' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LFKFFK _entity_poly.pdbx_seq_one_letter_code_can LFKFFK _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PHE n 1 3 LYS n 1 4 PHE n 1 5 PHE n 1 6 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Staphylococcus aureus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1280 _pdbx_entity_src_syn.details 'LFKFFK from PSMalpha3, synthesized' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code H9BRQ7_STAAU _struct_ref.pdbx_db_accession H9BRQ7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LFKFFK _struct_ref.pdbx_align_begin 7 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6FHD B 1 ? 6 ? H9BRQ7 7 ? 12 ? 1 6 2 1 6FHD A 1 ? 6 ? H9BRQ7 7 ? 12 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6FHD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.52 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 18.96 _exptl_crystal.description Needle-like _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Reservoir contained 0.1 M Sodium acetate pH 5.1 , 45 %w/v PEG 400, 0.09 M LiSO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-02 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9763 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 19.453 _reflns.entry_id 6FHD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 19.300 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 913 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.636 _reflns.pdbx_Rmerge_I_obs 0.284 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.070 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.851 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.292 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.850 1.960 ? 5.610 ? ? ? ? 148 91.900 ? ? ? ? 0.547 ? ? ? ? ? ? ? ? 17.500 ? ? ? ? 0.563 ? ? 1 1 0.946 ? 1.960 2.100 ? 7.630 ? ? ? ? 133 100.000 ? ? ? ? 0.372 ? ? ? ? ? ? ? ? 18.421 ? ? ? ? 0.383 ? ? 2 1 0.949 ? 2.100 2.270 ? 8.600 ? ? ? ? 129 99.200 ? ? ? ? 0.330 ? ? ? ? ? ? ? ? 17.628 ? ? ? ? 0.340 ? ? 3 1 0.986 ? 2.270 2.480 ? 8.030 ? ? ? ? 114 94.200 ? ? ? ? 0.329 ? ? ? ? ? ? ? ? 16.746 ? ? ? ? 0.340 ? ? 4 1 0.979 ? 2.480 2.780 ? 9.470 ? ? ? ? 108 99.100 ? ? ? ? 0.301 ? ? ? ? ? ? ? ? 18.176 ? ? ? ? 0.311 ? ? 5 1 0.989 ? 2.780 3.200 ? 11.190 ? ? ? ? 91 97.800 ? ? ? ? 0.261 ? ? ? ? ? ? ? ? 18.418 ? ? ? ? 0.268 ? ? 6 1 0.975 ? 3.200 3.920 ? 12.770 ? ? ? ? 90 95.700 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 17.844 ? ? ? ? 0.234 ? ? 7 1 0.994 ? 3.920 5.550 ? 13.480 ? ? ? ? 65 97.000 ? ? ? ? 0.273 ? ? ? ? ? ? ? ? 17.138 ? ? ? ? 0.281 ? ? 8 1 0.993 ? 5.550 19.300 ? 9.710 ? ? ? ? 35 87.500 ? ? ? ? 0.219 ? ? ? ? ? ? ? ? 14.857 ? ? ? ? 0.232 ? ? 9 1 0.998 ? # _refine.aniso_B[1][1] 1.1900 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0200 _refine.aniso_B[2][2] -0.5300 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -0.3800 _refine.B_iso_max 34.140 _refine.B_iso_mean 11.8190 _refine.B_iso_min 6.870 _refine.correlation_coeff_Fo_to_Fc 0.9580 _refine.correlation_coeff_Fo_to_Fc_free 0.9690 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6FHD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 19.3000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 821 _refine.ls_number_reflns_R_free 92 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.3300 _refine.ls_percent_reflns_R_free 10.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1728 _refine.ls_R_factor_R_free 0.1869 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1712 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Ideal beta-strand of poly-alanine' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2320 _refine.pdbx_overall_ESU_R_Free 0.1470 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.4350 _refine.overall_SU_ML 0.0970 _refine.overall_SU_R_Cruickshank_DPI 0.2321 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 19.3000 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 136 _refine_hist.pdbx_number_residues_total 12 _refine_hist.pdbx_B_iso_mean_ligand 28.99 _refine_hist.pdbx_B_iso_mean_solvent 23.51 _refine_hist.pdbx_number_atoms_protein 120 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.020 132 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.035 0.020 132 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.893 2.050 172 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.508 3.000 302 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 8.292 5.000 10 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 39.695 20.000 6 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.116 15.000 26 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.097 0.200 16 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 0.020 120 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.019 0.020 40 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8500 _refine_ls_shell.d_res_low 1.8980 _refine_ls_shell.number_reflns_all 81 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 8 _refine_ls_shell.number_reflns_R_work 73 _refine_ls_shell.percent_reflns_obs 98.7800 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4360 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2970 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6FHD _struct.title 'Crystal Structure of the Amyloid-like, out-of-register beta-sheets, polymorph of the LFKFFK segment from the S. aureus PSMalpha3' _struct.pdbx_model_details 'Phenol Soluble Modulin' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6FHD _struct_keywords.text 'Out-of-register beta-sheets, amyloid-like, bacterial amyloid fibril, S. aureus, PSM, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 2 ? PHE A 5 ? PHE B 2 PHE B 5 AA1 2 LYS B 3 ? LYS B 6 ? LYS A 3 LYS A 6 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 4 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id B _pdbx_struct_sheet_hbond.range_1_auth_seq_id 4 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 4 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 4 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 101 ? 8 'binding site for residue SO4 B 101' AC2 Software B NA 102 ? 2 'binding site for residue NA B 102' AC3 Software A SO4 101 ? 7 'binding site for residue SO4 A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS B 3 ? LYS A 3 . ? 1_555 ? 2 AC1 8 PHE B 5 ? PHE A 5 . ? 1_555 ? 3 AC1 8 LYS B 6 ? LYS A 6 . ? 2_757 ? 4 AC1 8 SO4 E . ? SO4 A 101 . ? 2_767 ? 5 AC1 8 HOH G . ? HOH A 201 . ? 2_767 ? 6 AC1 8 LYS A 3 ? LYS B 3 . ? 1_555 ? 7 AC1 8 PHE A 5 ? PHE B 5 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH B 201 . ? 1_555 ? 9 AC2 2 PHE A 2 ? PHE B 2 . ? 1_555 ? 10 AC2 2 PHE A 2 ? PHE B 2 . ? 2_757 ? 11 AC3 7 LYS B 3 ? LYS A 3 . ? 2_747 ? 12 AC3 7 LYS B 6 ? LYS A 6 . ? 4_747 ? 13 AC3 7 LYS B 6 ? LYS A 6 . ? 1_545 ? 14 AC3 7 HOH G . ? HOH A 201 . ? 1_555 ? 15 AC3 7 LYS A 3 ? LYS B 3 . ? 2_757 ? 16 AC3 7 LYS A 6 ? LYS B 6 . ? 1_544 ? 17 AC3 7 SO4 C . ? SO4 B 101 . ? 2_747 ? # _atom_sites.entry_id 6FHD _atom_sites.fract_transf_matrix[1][1] 0.024372 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.015166 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.085251 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.047858 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LEU A 1 1 ? 32.036 -6.902 22.281 1.00 7.84 ? 1 LEU B N 1 ATOM 2 C CA . LEU A 1 1 ? 31.061 -5.797 22.173 1.00 7.74 ? 1 LEU B CA 1 ATOM 3 C C . LEU A 1 1 ? 30.324 -5.624 23.488 1.00 7.71 ? 1 LEU B C 1 ATOM 4 O O . LEU A 1 1 ? 29.977 -6.615 24.142 1.00 7.69 ? 1 LEU B O 1 ATOM 5 C CB . LEU A 1 1 ? 30.030 -6.096 21.080 1.00 8.16 ? 1 LEU B CB 1 ATOM 6 C CG . LEU A 1 1 ? 30.492 -6.172 19.640 1.00 8.72 ? 1 LEU B CG 1 ATOM 7 C CD1 . LEU A 1 1 ? 29.264 -6.338 18.735 1.00 9.09 ? 1 LEU B CD1 1 ATOM 8 C CD2 . LEU A 1 1 ? 31.303 -4.935 19.276 1.00 8.59 ? 1 LEU B CD2 1 ATOM 9 N N . PHE A 1 2 ? 30.040 -4.388 23.862 1.00 7.36 ? 2 PHE B N 1 ATOM 10 C CA . PHE A 1 2 ? 29.300 -4.189 25.090 1.00 7.44 ? 2 PHE B CA 1 ATOM 11 C C . PHE A 1 2 ? 28.559 -2.905 25.126 1.00 7.25 ? 2 PHE B C 1 ATOM 12 O O . PHE A 1 2 ? 28.889 -1.956 24.467 1.00 6.87 ? 2 PHE B O 1 ATOM 13 C CB . PHE A 1 2 ? 30.223 -4.283 26.326 1.00 7.34 ? 2 PHE B CB 1 ATOM 14 C CG . PHE A 1 2 ? 31.184 -3.162 26.446 1.00 7.29 ? 2 PHE B CG 1 ATOM 15 C CD1 . PHE A 1 2 ? 32.392 -3.203 25.788 1.00 7.21 ? 2 PHE B CD1 1 ATOM 16 C CD2 . PHE A 1 2 ? 30.846 -2.029 27.165 1.00 7.46 ? 2 PHE B CD2 1 ATOM 17 C CE1 . PHE A 1 2 ? 33.273 -2.149 25.897 1.00 7.48 ? 2 PHE B CE1 1 ATOM 18 C CE2 . PHE A 1 2 ? 31.713 -0.953 27.268 1.00 7.46 ? 2 PHE B CE2 1 ATOM 19 C CZ . PHE A 1 2 ? 32.930 -1.008 26.619 1.00 7.57 ? 2 PHE B CZ 1 ATOM 20 N N . LYS A 1 3 ? 27.532 -2.934 25.950 1.00 8.00 ? 3 LYS B N 1 ATOM 21 C CA . LYS A 1 3 ? 26.803 -1.758 26.401 1.00 8.09 ? 3 LYS B CA 1 ATOM 22 C C . LYS A 1 3 ? 26.934 -1.654 27.900 1.00 7.91 ? 3 LYS B C 1 ATOM 23 O O . LYS A 1 3 ? 26.731 -2.628 28.621 1.00 7.52 ? 3 LYS B O 1 ATOM 24 C CB . LYS A 1 3 ? 25.335 -1.886 26.087 1.00 8.78 ? 3 LYS B CB 1 ATOM 25 C CG . LYS A 1 3 ? 25.038 -1.974 24.640 1.00 9.59 ? 3 LYS B CG 1 ATOM 26 C CD . LYS A 1 3 ? 23.545 -2.013 24.431 1.00 10.75 ? 3 LYS B CD 1 ATOM 27 C CE . LYS A 1 3 ? 23.220 -1.667 23.006 1.00 11.56 ? 3 LYS B CE 1 ATOM 28 N NZ . LYS A 1 3 ? 21.757 -1.825 22.734 1.00 12.55 ? 3 LYS B NZ 1 ATOM 29 N N . PHE A 1 4 ? 27.227 -0.437 28.353 1.00 7.88 ? 4 PHE B N 1 ATOM 30 C CA . PHE A 1 4 ? 27.309 -0.101 29.729 1.00 8.15 ? 4 PHE B CA 1 ATOM 31 C C . PHE A 1 4 ? 26.529 1.157 30.059 1.00 8.52 ? 4 PHE B C 1 ATOM 32 O O . PHE A 1 4 ? 26.682 2.175 29.437 1.00 7.69 ? 4 PHE B O 1 ATOM 33 C CB . PHE A 1 4 ? 28.748 0.114 30.159 1.00 8.07 ? 4 PHE B CB 1 ATOM 34 C CG . PHE A 1 4 ? 28.894 0.420 31.608 1.00 8.20 ? 4 PHE B CG 1 ATOM 35 C CD1 . PHE A 1 4 ? 28.732 -0.607 32.578 1.00 8.33 ? 4 PHE B CD1 1 ATOM 36 C CD2 . PHE A 1 4 ? 29.188 1.697 32.032 1.00 8.17 ? 4 PHE B CD2 1 ATOM 37 C CE1 . PHE A 1 4 ? 28.830 -0.318 33.890 1.00 7.99 ? 4 PHE B CE1 1 ATOM 38 C CE2 . PHE A 1 4 ? 29.340 1.965 33.365 1.00 8.20 ? 4 PHE B CE2 1 ATOM 39 C CZ . PHE A 1 4 ? 29.165 0.960 34.292 1.00 8.28 ? 4 PHE B CZ 1 ATOM 40 N N . PHE A 1 5 ? 25.708 1.042 31.084 1.00 9.88 ? 5 PHE B N 1 ATOM 41 C CA . PHE A 1 5 ? 24.960 2.164 31.605 1.00 11.35 ? 5 PHE B CA 1 ATOM 42 C C . PHE A 1 5 ? 25.192 2.294 33.088 1.00 13.65 ? 5 PHE B C 1 ATOM 43 O O . PHE A 1 5 ? 25.156 1.284 33.837 1.00 12.06 ? 5 PHE B O 1 ATOM 44 C CB . PHE A 1 5 ? 23.477 1.920 31.462 1.00 12.59 ? 5 PHE B CB 1 ATOM 45 C CG . PHE A 1 5 ? 22.958 1.930 30.069 1.00 12.72 ? 5 PHE B CG 1 ATOM 46 C CD1 . PHE A 1 5 ? 23.016 0.815 29.306 1.00 13.04 ? 5 PHE B CD1 1 ATOM 47 C CD2 . PHE A 1 5 ? 22.284 3.042 29.577 1.00 14.05 ? 5 PHE B CD2 1 ATOM 48 C CE1 . PHE A 1 5 ? 22.460 0.783 28.043 1.00 14.20 ? 5 PHE B CE1 1 ATOM 49 C CE2 . PHE A 1 5 ? 21.688 3.004 28.318 1.00 13.98 ? 5 PHE B CE2 1 ATOM 50 C CZ . PHE A 1 5 ? 21.780 1.879 27.554 1.00 13.97 ? 5 PHE B CZ 1 ATOM 51 N N . LYS A 1 6 ? 25.353 3.547 33.528 1.00 16.31 ? 6 LYS B N 1 ATOM 52 C CA . LYS A 1 6 ? 25.297 3.904 34.940 1.00 19.52 ? 6 LYS B CA 1 ATOM 53 C C . LYS A 1 6 ? 24.301 5.037 35.243 1.00 21.90 ? 6 LYS B C 1 ATOM 54 O O . LYS A 1 6 ? 24.363 6.101 34.617 1.00 22.00 ? 6 LYS B O 1 ATOM 55 C CB . LYS A 1 6 ? 26.676 4.345 35.388 1.00 19.91 ? 6 LYS B CB 1 ATOM 56 C CG . LYS A 1 6 ? 26.714 4.807 36.817 1.00 20.80 ? 6 LYS B CG 1 ATOM 57 C CD . LYS A 1 6 ? 26.428 3.633 37.758 1.00 22.20 ? 6 LYS B CD 1 ATOM 58 C CE . LYS A 1 6 ? 26.311 4.144 39.181 1.00 22.84 ? 6 LYS B CE 1 ATOM 59 N NZ . LYS A 1 6 ? 26.428 2.985 40.077 1.00 23.11 ? 6 LYS B NZ 1 ATOM 60 O OXT . LYS A 1 6 ? 23.434 4.937 36.134 1.00 29.25 ? 6 LYS B OXT 1 ATOM 61 N N . LEU B 1 1 ? 24.090 10.448 34.538 1.00 9.09 ? 1 LEU A N 1 ATOM 62 C CA . LEU B 1 1 ? 23.769 9.236 33.746 1.00 9.13 ? 1 LEU A CA 1 ATOM 63 C C . LEU B 1 1 ? 24.812 9.111 32.653 1.00 8.26 ? 1 LEU A C 1 ATOM 64 O O . LEU B 1 1 ? 25.322 10.106 32.148 1.00 7.72 ? 1 LEU A O 1 ATOM 65 C CB . LEU B 1 1 ? 22.363 9.341 33.168 1.00 10.28 ? 1 LEU A CB 1 ATOM 66 C CG . LEU B 1 1 ? 21.217 8.538 33.777 1.00 11.96 ? 1 LEU A CG 1 ATOM 67 C CD1 . LEU B 1 1 ? 21.267 8.397 35.271 1.00 12.71 ? 1 LEU A CD1 1 ATOM 68 C CD2 . LEU B 1 1 ? 19.865 9.111 33.372 1.00 12.48 ? 1 LEU A CD2 1 ATOM 69 N N . PHE B 1 2 ? 25.156 7.873 32.336 1.00 8.21 ? 2 PHE A N 1 ATOM 70 C CA . PHE B 1 2 ? 26.242 7.535 31.477 1.00 7.72 ? 2 PHE A CA 1 ATOM 71 C C . PHE B 1 2 ? 25.825 6.272 30.689 1.00 7.85 ? 2 PHE A C 1 ATOM 72 O O . PHE B 1 2 ? 25.227 5.363 31.236 1.00 7.46 ? 2 PHE A O 1 ATOM 73 C CB . PHE B 1 2 ? 27.457 7.294 32.359 1.00 7.49 ? 2 PHE A CB 1 ATOM 74 C CG . PHE B 1 2 ? 28.703 6.884 31.636 1.00 7.21 ? 2 PHE A CG 1 ATOM 75 C CD1 . PHE B 1 2 ? 29.320 7.713 30.731 1.00 6.93 ? 2 PHE A CD1 1 ATOM 76 C CD2 . PHE B 1 2 ? 29.328 5.695 31.956 1.00 7.21 ? 2 PHE A CD2 1 ATOM 77 C CE1 . PHE B 1 2 ? 30.501 7.353 30.113 1.00 7.24 ? 2 PHE A CE1 1 ATOM 78 C CE2 . PHE B 1 2 ? 30.531 5.327 31.366 1.00 7.28 ? 2 PHE A CE2 1 ATOM 79 C CZ . PHE B 1 2 ? 31.138 6.164 30.449 1.00 7.10 ? 2 PHE A CZ 1 ATOM 80 N N . LYS B 1 3 ? 26.102 6.280 29.388 1.00 7.94 ? 3 LYS A N 1 ATOM 81 C CA . LYS B 1 3 ? 25.798 5.213 28.484 1.00 7.94 ? 3 LYS A CA 1 ATOM 82 C C . LYS B 1 3 ? 27.005 5.073 27.648 1.00 7.43 ? 3 LYS A C 1 ATOM 83 O O . LYS B 1 3 ? 27.452 6.014 27.041 1.00 7.01 ? 3 LYS A O 1 ATOM 84 C CB . LYS B 1 3 ? 24.582 5.629 27.672 1.00 8.93 ? 3 LYS A CB 1 ATOM 85 C CG . LYS B 1 3 ? 24.190 4.773 26.498 1.00 10.21 ? 3 LYS A CG 1 ATOM 86 C CD . LYS B 1 3 ? 22.944 5.373 25.884 1.00 10.97 ? 3 LYS A CD 1 ATOM 87 C CE . LYS B 1 3 ? 22.354 4.498 24.820 1.00 11.37 ? 3 LYS A CE 1 ATOM 88 N NZ . LYS B 1 3 ? 20.944 4.842 24.517 1.00 11.35 ? 3 LYS A NZ 1 ATOM 89 N N . PHE B 1 4 ? 27.594 3.893 27.626 1.00 7.43 ? 4 PHE A N 1 ATOM 90 C CA . PHE B 1 4 ? 28.886 3.758 27.016 1.00 7.37 ? 4 PHE A CA 1 ATOM 91 C C . PHE B 1 4 ? 28.874 2.474 26.251 1.00 7.04 ? 4 PHE A C 1 ATOM 92 O O . PHE B 1 4 ? 28.623 1.441 26.834 1.00 7.27 ? 4 PHE A O 1 ATOM 93 C CB . PHE B 1 4 ? 29.939 3.772 28.136 1.00 7.39 ? 4 PHE A CB 1 ATOM 94 C CG . PHE B 1 4 ? 31.295 3.370 27.710 1.00 7.60 ? 4 PHE A CG 1 ATOM 95 C CD1 . PHE B 1 4 ? 31.875 3.852 26.533 1.00 7.97 ? 4 PHE A CD1 1 ATOM 96 C CD2 . PHE B 1 4 ? 32.054 2.524 28.516 1.00 7.90 ? 4 PHE A CD2 1 ATOM 97 C CE1 . PHE B 1 4 ? 33.174 3.502 26.207 1.00 8.32 ? 4 PHE A CE1 1 ATOM 98 C CE2 . PHE B 1 4 ? 33.340 2.168 28.168 1.00 7.97 ? 4 PHE A CE2 1 ATOM 99 C CZ . PHE B 1 4 ? 33.908 2.644 27.012 1.00 7.98 ? 4 PHE A CZ 1 ATOM 100 N N . PHE B 1 5 ? 29.108 2.551 24.952 1.00 7.38 ? 5 PHE A N 1 ATOM 101 C CA . PHE B 1 5 ? 29.144 1.393 24.096 1.00 7.96 ? 5 PHE A CA 1 ATOM 102 C C . PHE B 1 5 ? 30.478 1.325 23.446 1.00 8.63 ? 5 PHE A C 1 ATOM 103 O O . PHE B 1 5 ? 30.928 2.305 22.869 1.00 8.50 ? 5 PHE A O 1 ATOM 104 C CB . PHE B 1 5 ? 28.134 1.468 22.942 1.00 7.89 ? 5 PHE A CB 1 ATOM 105 C CG . PHE B 1 5 ? 26.698 1.591 23.330 1.00 8.24 ? 5 PHE A CG 1 ATOM 106 C CD1 . PHE B 1 5 ? 26.236 1.433 24.662 1.00 8.54 ? 5 PHE A CD1 1 ATOM 107 C CD2 . PHE B 1 5 ? 25.764 1.804 22.335 1.00 8.67 ? 5 PHE A CD2 1 ATOM 108 C CE1 . PHE B 1 5 ? 24.907 1.534 24.966 1.00 8.55 ? 5 PHE A CE1 1 ATOM 109 C CE2 . PHE B 1 5 ? 24.419 1.890 22.639 1.00 9.14 ? 5 PHE A CE2 1 ATOM 110 C CZ . PHE B 1 5 ? 23.982 1.748 23.963 1.00 9.01 ? 5 PHE A CZ 1 ATOM 111 N N . LYS B 1 6 ? 31.065 0.136 23.437 1.00 10.85 ? 6 LYS A N 1 ATOM 112 C CA . LYS B 1 6 ? 32.290 -0.139 22.678 1.00 12.32 ? 6 LYS A CA 1 ATOM 113 C C . LYS B 1 6 ? 32.472 -1.604 22.307 1.00 13.82 ? 6 LYS A C 1 ATOM 114 O O . LYS B 1 6 ? 31.480 -2.354 22.219 1.00 15.12 ? 6 LYS A O 1 ATOM 115 C CB . LYS B 1 6 ? 33.502 0.370 23.435 1.00 13.70 ? 6 LYS A CB 1 ATOM 116 C CG . LYS B 1 6 ? 34.136 1.518 22.669 1.00 15.81 ? 6 LYS A CG 1 ATOM 117 C CD . LYS B 1 6 ? 35.591 1.677 22.999 1.00 17.28 ? 6 LYS A CD 1 ATOM 118 C CE . LYS B 1 6 ? 36.157 2.844 22.218 1.00 18.24 ? 6 LYS A CE 1 ATOM 119 N NZ . LYS B 1 6 ? 37.441 3.156 22.831 1.00 20.46 ? 6 LYS A NZ 1 ATOM 120 O OXT . LYS B 1 6 ? 33.611 -2.056 22.050 1.00 13.60 ? 6 LYS A OXT 1 HETATM 121 S S . SO4 C 2 . ? 19.971 1.587 23.358 1.00 22.30 ? 101 SO4 B S 1 HETATM 122 O O1 . SO4 C 2 . ? 20.862 0.547 22.878 1.00 28.60 ? 101 SO4 B O1 1 HETATM 123 O O2 . SO4 C 2 . ? 18.662 1.319 22.696 1.00 26.21 ? 101 SO4 B O2 1 HETATM 124 O O3 . SO4 C 2 . ? 20.431 2.944 23.079 1.00 26.16 ? 101 SO4 B O3 1 HETATM 125 O O4 . SO4 C 2 . ? 19.879 1.386 24.782 1.00 26.32 ? 101 SO4 B O4 1 HETATM 126 NA NA . NA D 3 . ? 28.028 -2.136 20.895 0.50 25.93 ? 102 NA B NA 1 HETATM 127 S S . SO4 E 2 . ? 36.195 -4.608 19.475 1.00 34.08 ? 101 SO4 A S 1 HETATM 128 O O1 . SO4 E 2 . ? 37.306 -4.991 18.559 1.00 34.14 ? 101 SO4 A O1 1 HETATM 129 O O2 . SO4 E 2 . ? 34.978 -4.360 18.648 1.00 28.64 ? 101 SO4 A O2 1 HETATM 130 O O3 . SO4 E 2 . ? 35.939 -5.663 20.496 1.00 31.10 ? 101 SO4 A O3 1 HETATM 131 O O4 . SO4 E 2 . ? 36.532 -3.358 20.178 1.00 33.86 ? 101 SO4 A O4 1 HETATM 132 O O . HOH F 4 . ? 20.342 -1.012 25.864 1.00 28.77 ? 201 HOH B O 1 HETATM 133 O O . HOH F 4 . ? 33.891 -5.753 23.983 1.00 17.48 ? 202 HOH B O 1 HETATM 134 O O . HOH F 4 . ? 25.770 0.362 36.396 1.00 30.11 ? 203 HOH B O 1 HETATM 135 O O . HOH G 4 . ? 33.902 -7.305 20.374 1.00 11.20 ? 201 HOH A O 1 HETATM 136 O O . HOH G 4 . ? 26.170 9.225 35.858 1.00 29.99 ? 202 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU B . n A 1 2 PHE 2 2 2 PHE PHE B . n A 1 3 LYS 3 3 3 LYS LYS B . n A 1 4 PHE 4 4 4 PHE PHE B . n A 1 5 PHE 5 5 5 PHE PHE B . n A 1 6 LYS 6 6 6 LYS LYS B . n B 1 1 LEU 1 1 1 LEU LEU A . n B 1 2 PHE 2 2 2 PHE PHE A . n B 1 3 LYS 3 3 3 LYS LYS A . n B 1 4 PHE 4 4 4 PHE PHE A . n B 1 5 PHE 5 5 5 PHE PHE A . n B 1 6 LYS 6 6 6 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 101 1 SO4 SO4 B . D 3 NA 1 102 1 NA NA B . E 2 SO4 1 101 2 SO4 SO4 A . F 4 HOH 1 201 4 HOH HOH B . F 4 HOH 2 202 3 HOH HOH B . F 4 HOH 3 203 6 HOH HOH B . G 4 HOH 1 201 2 HOH HOH A . G 4 HOH 2 202 5 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G 1 3 A,B,C,D,E,F,G 1 4 A,B,C,D,E,F,G 1 5 A,B,C,D,E,F,G 1 6 A,B,C,D,E,F,G 1 7 A,B,C,D,E,F,G 1 8 A,B,C,D,E,F,G 1 9 A,B,C,D,E,F,G 1 10 A,B,C,D,E,F,G 1 11 A,B,C,D,E,F,G 1 12 A,B,C,D,E,F,G 1 13 A,B,C,D,E,F,G 1 14 A,B,C,D,E,F,G 1 15 A,B,C,D,E,F,G 1 16 A,B,C,D,E,F,G 1 17 A,B,C,D,E,F,G 1 18 A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -11.7300000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -23.4600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_525 x,y-3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -35.1900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_515 x,y-4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -46.9200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 11.7300000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 23.4600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 35.1900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_595 x,y+4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 46.9200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10 'crystal symmetry operation' 4_748 -x+5/2,y-1/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 -5.8650000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 11 'crystal symmetry operation' 4_758 -x+5/2,y+1/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 5.8650000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 12 'crystal symmetry operation' 4_738 -x+5/2,y-3/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 -17.5950000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 13 'crystal symmetry operation' 4_728 -x+5/2,y-5/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 -29.3250000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 14 'crystal symmetry operation' 4_718 -x+5/2,y-7/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 -41.0550000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 15 'crystal symmetry operation' 4_768 -x+5/2,y+3/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 17.5950000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 16 'crystal symmetry operation' 4_778 -x+5/2,y+5/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 29.3250000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 17 'crystal symmetry operation' 4_788 -x+5/2,y+7/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 41.0550000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 18 'crystal symmetry operation' 4_798 -x+5/2,y+9/2,-z+3 -1.0000000000 0.0000000000 0.0000000000 63.5713379920 0.0000000000 1.0000000000 0.0000000000 52.7850000000 0.0000000000 0.0000000000 -1.0000000000 62.6863880756 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-08 2 'Structure model' 1 1 2018-09-12 3 'Structure model' 1 2 2022-03-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 3 'Structure model' '_database_2.pdbx_DOI' 9 3 'Structure model' '_database_2.pdbx_database_accession' 10 3 'Structure model' '_pdbx_audit_support.funding_organization' # _pdbx_phasing_MR.entry_id 6FHD _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 3 ? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Israel Science Foundation' Israel 560/16 1 'Deutsch-IsraelischeProjektkooperation (DIP)' Israel 3655/1-1 2 'I-CORE Program of the Planning and Budgeting Committee and The Israel Science Foundation' Israel 1775/12 3 'United States - Israel Binational Science Foundation (BSF)' Israel 2013254 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'SODIUM ION' NA 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'Fibrils were visualized by electron microscopy' #