0.010720 0.006189 0.000000 0.000000 0.012379 0.000000 0.000000 0.000000 0.015152 0.00000 0.00000 0.00000 Stach, L. Morgan, R.M.L. Freemont, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 93.282 93.282 65.997 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O S 78.133 DIMETHYL SULFOXIDE non-polymer C12 H15 F N2 O 222.259 ~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 S P N 6 N O N 7 N O N 8 N O N 9 N O N 10 N C N 11 R C N 12 N O N 13 S C N 14 N O N 15 R C N 16 N O N 17 R C Y 18 N N Y 19 N C Y 20 N N Y 21 N C Y 22 N C N 23 N N Y 24 N N Y 25 N C Y 26 N N Y 27 N C N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N N N 57 S C N 58 N C N 59 N O N 60 N C N 61 N C N 62 N C N 63 N N N 64 N C N 65 N N N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N N N 84 S C N 85 N C N 86 N O N 87 N C N 88 N C N 89 N O N 90 N N N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 N C N 105 N C N 106 N O N 107 N O N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 R C N 118 N C N 119 N O N 120 N C N 121 N S N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N S N 131 N O N 132 N C N 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N C N 141 N C N 142 N C Y 143 N C Y 144 N C Y 145 N C Y 146 N C Y 147 N C Y 148 N C N 149 N C N 150 N C N 151 N C N 152 N F N 153 N N N 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C N 176 N C N 177 N C N 178 N O N 179 N N N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N O N 199 N O N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 N C N 212 N C N 213 N O N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 N C Y 225 N C Y 226 N N Y 227 N C Y 228 N C Y 229 N N N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N O N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 S C N 249 N C N 250 N C N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N C N 272 N C N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N C N 295 N C N 296 N N N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N S N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N C N 334 N C N 335 N O N 336 N C N 337 N C N 338 S C N 339 N O N 340 N C N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N NA N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C N 384 N C N 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C N 401 N O N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 R C N 415 N O N 416 N C N 417 N O N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N N Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N N N 455 S C N 456 N C N 457 N O N 458 N C Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C N 465 N O N 466 N O N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C N 483 N C N 484 N C N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing Y 30 N sing Y 31 N sing Y 32 N doub N 33 N sing Y 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N doub N 39 N sing N 40 N sing Y 41 N sing Y 42 N doub N 43 N sing Y 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub Y 144 N doub Y 145 N sing Y 146 N sing N 147 N sing Y 148 N doub Y 149 N doub Y 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N sing Y 226 N doub Y 227 N doub N 228 N sing Y 229 N sing N 230 N sing Y 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing Y 423 N doub Y 424 N sing Y 425 N sing N 426 N sing Y 427 N doub Y 428 N sing Y 429 N sing N 430 N sing Y 431 N sing Y 432 N doub N 433 N sing Y 434 N doub N 435 N sing Y 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N doub N 447 N sing N 448 N sing N 449 N sing N 450 N sing Y 451 N doub Y 452 N sing Y 453 N sing N 454 N sing Y 455 N doub N 456 N sing Y 457 N doub N 458 N sing Y 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N doub N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing NE Febs Lett. FEBLAL 0165 0014-5793 594 933 943 10.1002/1873-3468.13667 31701538 Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split-washer-type mechanism for substrate unfolding. 2020 0000-0002-9760-3638 0000-0002-5658-8486 10.2210/pdb6g2x/pdb pdb_00006g2x 100 1 PIXEL 2017-05-03 DECTRIS PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.92 1.0 I04-1 Diamond 0.92 SYNCHROTRON DIAMOND BEAMLINE I04-1 34226.012 Transitional endoplasmic reticulum ATPase 3.6.4.6 1 man polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 4 syn non-polymer 78.133 DIMETHYL SULFOXIDE 2 syn non-polymer 222.259 ~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide 2 syn non-polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 77 nat water TER ATPase,15S Mg(2+)-ATPase p97 subunit,Valosin-containing protein,VCP no no GPGSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA IRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ GPGSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA IRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 306 VCP 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.42 49.21 VAPOR DIFFUSION, SITTING DROP 0.08M L-Na-Glutamate; 0.08M Alanine (racemic); 0.08M Glycine; 0.08M Lysine HCl (racemic); 0.08M Serine (racemic), 0.08M Tris, 0.08M BICINE, 10% v/v MPD; 10% PEG 1000; 10% w/v PEG 3350 at pH 8.5 293 citation citation_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2019-04-10 1 1 2020-04-22 1 2 2024-01-17 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession United Kingdom Cancer Research UK N PDBE Y PDBE 2018-03-23 REL REL EJQ EJQ SUBJECT OF INVESTIGATION MPD (4S)-2-METHYL-2,4-PENTANEDIOL DMS DIMETHYL SULFOXIDE EJQ ~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide ADP ADENOSINE-5'-DIPHOSPHATE NA SODIUM ION HOH water 5FTJ PDB experimental model MPD 1 2 MPD MPD 801 A MPD 2 2 MPD MPD 802 A MPD 3 2 MPD MPD 803 A MPD 4 2 MPD MPD 804 A DMS 5 3 DMS DMS 805 A DMS 6 3 DMS DMS 806 A LIG 7 4 EJQ EJQ 807 A LIG 8 4 EJQ EJQ 808 A ADP 9 5 ADP ADP 809 A NA 10 6 NA NA 810 A HOH 77 7 HOH HOH 901 A HOH 78 7 HOH HOH 902 A HOH 60 7 HOH HOH 903 A HOH 64 7 HOH HOH 904 A HOH 76 7 HOH HOH 905 A HOH 28 7 HOH HOH 906 A HOH 69 7 HOH HOH 907 A HOH 18 7 HOH HOH 908 A HOH 25 7 HOH HOH 909 A HOH 34 7 HOH HOH 910 A HOH 74 7 HOH HOH 911 A HOH 21 7 HOH HOH 912 A HOH 12 7 HOH HOH 913 A HOH 11 7 HOH HOH 914 A HOH 47 7 HOH HOH 915 A HOH 36 7 HOH HOH 916 A HOH 32 7 HOH HOH 917 A HOH 22 7 HOH HOH 918 A HOH 10 7 HOH HOH 919 A HOH 7 7 HOH HOH 920 A HOH 27 7 HOH HOH 921 A HOH 20 7 HOH HOH 922 A HOH 3 7 HOH HOH 923 A HOH 46 7 HOH HOH 924 A HOH 1 7 HOH HOH 925 A HOH 44 7 HOH HOH 926 A HOH 6 7 HOH HOH 927 A HOH 45 7 HOH HOH 928 A HOH 51 7 HOH HOH 929 A HOH 4 7 HOH HOH 930 A HOH 2 7 HOH HOH 931 A HOH 71 7 HOH HOH 932 A HOH 48 7 HOH HOH 933 A HOH 43 7 HOH HOH 934 A HOH 38 7 HOH HOH 935 A HOH 37 7 HOH HOH 936 A HOH 54 7 HOH HOH 937 A HOH 41 7 HOH HOH 938 A HOH 42 7 HOH HOH 939 A HOH 70 7 HOH HOH 940 A HOH 19 7 HOH HOH 941 A HOH 29 7 HOH HOH 942 A HOH 8 7 HOH HOH 943 A HOH 63 7 HOH HOH 944 A HOH 9 7 HOH HOH 945 A HOH 40 7 HOH HOH 946 A HOH 68 7 HOH HOH 947 A HOH 50 7 HOH HOH 948 A HOH 35 7 HOH HOH 949 A HOH 31 7 HOH HOH 950 A HOH 66 7 HOH HOH 951 A HOH 23 7 HOH HOH 952 A HOH 49 7 HOH HOH 953 A HOH 5 7 HOH HOH 954 A HOH 56 7 HOH HOH 955 A HOH 65 7 HOH HOH 956 A HOH 13 7 HOH HOH 957 A HOH 17 7 HOH HOH 958 A HOH 59 7 HOH HOH 959 A HOH 30 7 HOH HOH 960 A HOH 58 7 HOH HOH 961 A HOH 33 7 HOH HOH 962 A HOH 62 7 HOH HOH 963 A HOH 15 7 HOH HOH 964 A HOH 24 7 HOH HOH 965 A HOH 72 7 HOH HOH 966 A HOH 26 7 HOH HOH 967 A HOH 14 7 HOH HOH 968 A HOH 73 7 HOH HOH 969 A HOH 53 7 HOH HOH 970 A HOH 57 7 HOH HOH 971 A HOH 39 7 HOH HOH 972 A HOH 52 7 HOH HOH 973 A HOH 67 7 HOH HOH 974 A HOH 61 7 HOH HOH 975 A HOH 55 7 HOH HOH 976 A HOH 75 7 HOH HOH 977 A n 1 459 A n 2 460 A n 3 461 A n 4 462 A n 5 463 A n 6 464 A n 7 465 A n 8 466 A n 9 467 A VAL 468 n 10 VAL 468 A VAL 469 n 11 VAL 469 A GLU 470 n 12 GLU 470 A VAL 471 n 13 VAL 471 A PRO 472 n 14 PRO 472 A GLN 473 n 15 GLN 473 A VAL 474 n 16 VAL 474 A THR 475 n 17 THR 475 A TRP 476 n 18 TRP 476 A GLU 477 n 19 GLU 477 A ASP 478 n 20 ASP 478 A ILE 479 n 21 ILE 479 A GLY 480 n 22 GLY 480 A GLY 481 n 23 GLY 481 A LEU 482 n 24 LEU 482 A GLU 483 n 25 GLU 483 A ASP 484 n 26 ASP 484 A VAL 485 n 27 VAL 485 A LYS 486 n 28 LYS 486 A ARG 487 n 29 ARG 487 A GLU 488 n 30 GLU 488 A LEU 489 n 31 LEU 489 A GLN 490 n 32 GLN 490 A GLU 491 n 33 GLU 491 A LEU 492 n 34 LEU 492 A VAL 493 n 35 VAL 493 A GLN 494 n 36 GLN 494 A TYR 495 n 37 TYR 495 A PRO 496 n 38 PRO 496 A VAL 497 n 39 VAL 497 A GLU 498 n 40 GLU 498 A HIS 499 n 41 HIS 499 A PRO 500 n 42 PRO 500 A ASP 501 n 43 ASP 501 A LYS 502 n 44 LYS 502 A PHE 503 n 45 PHE 503 A LEU 504 n 46 LEU 504 A LYS 505 n 47 LYS 505 A PHE 506 n 48 PHE 506 A GLY 507 n 49 GLY 507 A MET 508 n 50 MET 508 A THR 509 n 51 THR 509 A PRO 510 n 52 PRO 510 A SER 511 n 53 SER 511 A LYS 512 n 54 LYS 512 A GLY 513 n 55 GLY 513 A VAL 514 n 56 VAL 514 A LEU 515 n 57 LEU 515 A PHE 516 n 58 PHE 516 A TYR 517 n 59 TYR 517 A GLY 518 n 60 GLY 518 A PRO 519 n 61 PRO 519 A PRO 520 n 62 PRO 520 A GLY 521 n 63 GLY 521 A CYS 522 n 64 CYS 522 A GLY 523 n 65 GLY 523 A LYS 524 n 66 LYS 524 A THR 525 n 67 THR 525 A LEU 526 n 68 LEU 526 A LEU 527 n 69 LEU 527 A ALA 528 n 70 ALA 528 A LYS 529 n 71 LYS 529 A ALA 530 n 72 ALA 530 A ILE 531 n 73 ILE 531 A ALA 532 n 74 ALA 532 A ASN 533 n 75 ASN 533 A GLU 534 n 76 GLU 534 A CYS 535 n 77 CYS 535 A GLN 536 n 78 GLN 536 A ALA 537 n 79 ALA 537 A ASN 538 n 80 ASN 538 A PHE 539 n 81 PHE 539 A ILE 540 n 82 ILE 540 A SER 541 n 83 SER 541 A ILE 542 n 84 ILE 542 A LYS 543 n 85 LYS 543 A GLY 544 n 86 GLY 544 A PRO 545 n 87 PRO 545 A GLU 546 n 88 GLU 546 A LEU 547 n 89 LEU 547 A LEU 548 n 90 LEU 548 A THR 549 n 91 THR 549 A n 92 550 A n 93 551 A n 94 552 A n 95 553 A n 96 554 A SER 555 n 97 SER 555 A GLU 556 n 98 GLU 556 A ALA 557 n 99 ALA 557 A ASN 558 n 100 ASN 558 A VAL 559 n 101 VAL 559 A ARG 560 n 102 ARG 560 A GLU 561 n 103 GLU 561 A ILE 562 n 104 ILE 562 A PHE 563 n 105 PHE 563 A ASP 564 n 106 ASP 564 A LYS 565 n 107 LYS 565 A ALA 566 n 108 ALA 566 A ARG 567 n 109 ARG 567 A GLN 568 n 110 GLN 568 A ALA 569 n 111 ALA 569 A ALA 570 n 112 ALA 570 A PRO 571 n 113 PRO 571 A CYS 572 n 114 CYS 572 A VAL 573 n 115 VAL 573 A LEU 574 n 116 LEU 574 A PHE 575 n 117 PHE 575 A PHE 576 n 118 PHE 576 A ASP 577 n 119 ASP 577 A GLU 578 n 120 GLU 578 A LEU 579 n 121 LEU 579 A ASP 580 n 122 ASP 580 A SER 581 n 123 SER 581 A ILE 582 n 124 ILE 582 A ALA 583 n 125 ALA 583 A LYS 584 n 126 LYS 584 A n 127 585 A n 128 586 A n 129 587 A n 130 588 A n 131 589 A n 132 590 A n 133 591 A n 134 592 A n 135 593 A n 136 594 A n 137 595 A ALA 596 n 138 ALA 596 A ALA 597 n 139 ALA 597 A ASP 598 n 140 ASP 598 A ARG 599 n 141 ARG 599 A VAL 600 n 142 VAL 600 A ILE 601 n 143 ILE 601 A ASN 602 n 144 ASN 602 A GLN 603 n 145 GLN 603 A ILE 604 n 146 ILE 604 A LEU 605 n 147 LEU 605 A THR 606 n 148 THR 606 A GLU 607 n 149 GLU 607 A MET 608 n 150 MET 608 A ASP 609 n 151 ASP 609 A GLY 610 n 152 GLY 610 A MET 611 n 153 MET 611 A SER 612 n 154 SER 612 A THR 613 n 155 THR 613 A LYS 614 n 156 LYS 614 A LYS 615 n 157 LYS 615 A ASN 616 n 158 ASN 616 A VAL 617 n 159 VAL 617 A PHE 618 n 160 PHE 618 A ILE 619 n 161 ILE 619 A ILE 620 n 162 ILE 620 A GLY 621 n 163 GLY 621 A ALA 622 n 164 ALA 622 A THR 623 n 165 THR 623 A ASN 624 n 166 ASN 624 A ARG 625 n 167 ARG 625 A PRO 626 n 168 PRO 626 A ASP 627 n 169 ASP 627 A ILE 628 n 170 ILE 628 A ILE 629 n 171 ILE 629 A ASP 630 n 172 ASP 630 A PRO 631 n 173 PRO 631 A ALA 632 n 174 ALA 632 A ILE 633 n 175 ILE 633 A LEU 634 n 176 LEU 634 A ARG 635 n 177 ARG 635 A PRO 636 n 178 PRO 636 A GLY 637 n 179 GLY 637 A ARG 638 n 180 ARG 638 A LEU 639 n 181 LEU 639 A ASP 640 n 182 ASP 640 A GLN 641 n 183 GLN 641 A LEU 642 n 184 LEU 642 A ILE 643 n 185 ILE 643 A TYR 644 n 186 TYR 644 A ILE 645 n 187 ILE 645 A PRO 646 n 188 PRO 646 A LEU 647 n 189 LEU 647 A PRO 648 n 190 PRO 648 A ASP 649 n 191 ASP 649 A GLU 650 n 192 GLU 650 A LYS 651 n 193 LYS 651 A SER 652 n 194 SER 652 A ARG 653 n 195 ARG 653 A VAL 654 n 196 VAL 654 A ALA 655 n 197 ALA 655 A ILE 656 n 198 ILE 656 A LEU 657 n 199 LEU 657 A LYS 658 n 200 LYS 658 A ALA 659 n 201 ALA 659 A ASN 660 n 202 ASN 660 A LEU 661 n 203 LEU 661 A ARG 662 n 204 ARG 662 A LYS 663 n 205 LYS 663 A SER 664 n 206 SER 664 A PRO 665 n 207 PRO 665 A VAL 666 n 208 VAL 666 A ALA 667 n 209 ALA 667 A LYS 668 n 210 LYS 668 A ASP 669 n 211 ASP 669 A VAL 670 n 212 VAL 670 A ASP 671 n 213 ASP 671 A LEU 672 n 214 LEU 672 A GLU 673 n 215 GLU 673 A PHE 674 n 216 PHE 674 A LEU 675 n 217 LEU 675 A ALA 676 n 218 ALA 676 A LYS 677 n 219 LYS 677 A MET 678 n 220 MET 678 A THR 679 n 221 THR 679 A ASN 680 n 222 ASN 680 A GLY 681 n 223 GLY 681 A PHE 682 n 224 PHE 682 A SER 683 n 225 SER 683 A GLY 684 n 226 GLY 684 A ALA 685 n 227 ALA 685 A ASP 686 n 228 ASP 686 A LEU 687 n 229 LEU 687 A THR 688 n 230 THR 688 A GLU 689 n 231 GLU 689 A ILE 690 n 232 ILE 690 A CYS 691 n 233 CYS 691 A GLN 692 n 234 GLN 692 A ARG 693 n 235 ARG 693 A ALA 694 n 236 ALA 694 A CYS 695 n 237 CYS 695 A LYS 696 n 238 LYS 696 A LEU 697 n 239 LEU 697 A ALA 698 n 240 ALA 698 A ILE 699 n 241 ILE 699 A ARG 700 n 242 ARG 700 A GLU 701 n 243 GLU 701 A SER 702 n 244 SER 702 A ILE 703 n 245 ILE 703 A GLU 704 n 246 GLU 704 A SER 705 n 247 SER 705 A GLU 706 n 248 GLU 706 A ILE 707 n 249 ILE 707 A ARG 708 n 250 ARG 708 A ARG 709 n 251 ARG 709 A GLU 710 n 252 GLU 710 A ARG 711 n 253 ARG 711 A GLU 712 n 254 GLU 712 A n 255 713 A n 256 714 A n 257 715 A n 258 716 A n 259 717 A n 260 718 A n 261 719 A n 262 720 A n 263 721 A n 264 722 A n 265 723 A n 266 724 A n 267 725 A n 268 726 A PRO 727 n 269 PRO 727 A VAL 728 n 270 VAL 728 A PRO 729 n 271 PRO 729 A GLU 730 n 272 GLU 730 A ILE 731 n 273 ILE 731 A ARG 732 n 274 ARG 732 A ARG 733 n 275 ARG 733 A ASP 734 n 276 ASP 734 A HIS 735 n 277 HIS 735 A PHE 736 n 278 PHE 736 A GLU 737 n 279 GLU 737 A GLU 738 n 280 GLU 738 A ALA 739 n 281 ALA 739 A MET 740 n 282 MET 740 A ARG 741 n 283 ARG 741 A PHE 742 n 284 PHE 742 A ALA 743 n 285 ALA 743 A ARG 744 n 286 ARG 744 A ARG 745 n 287 ARG 745 A SER 746 n 288 SER 746 A VAL 747 n 289 VAL 747 A SER 748 n 290 SER 748 A ASP 749 n 291 ASP 749 A ASN 750 n 292 ASN 750 A ASP 751 n 293 ASP 751 A ILE 752 n 294 ILE 752 A ARG 753 n 295 ARG 753 A LYS 754 n 296 LYS 754 A TYR 755 n 297 TYR 755 A GLU 756 n 298 GLU 756 A MET 757 n 299 MET 757 A PHE 758 n 300 PHE 758 A ALA 759 n 301 ALA 759 A GLN 760 n 302 GLN 760 A THR 761 n 303 THR 761 A LEU 762 n 304 LEU 762 A GLN 763 n 305 GLN 763 A GLN 764 n 306 GLN 764 A author_and_software_defined_assembly PISA 1 monomeric gel filtration 2440 -66 15540 A ASN 624 A A OD1 ASN 166 1_555 A NA 810 K NA NA 1_555 A ADP 809 J O3B ADP 1_555 157.4 A ASN 624 A A OD1 ASN 166 1_555 A NA 810 K NA NA 1_555 A HOH 972 L O HOH 1_555 90.0 A ADP 809 J O3B ADP 1_555 A NA 810 K NA NA 1_555 A HOH 972 L O HOH 1_555 111.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 542 A N ILE 84 A O ASP 577 A O ASP 119 A N PHE 576 A N PHE 118 A O ILE 620 A O ILE 162 A O GLY 621 A O GLY 163 A N PHE 516 A N PHE 58 A N LEU 515 A N LEU 57 A O ILE 643 A O ILE 185 1 A GLY 459 A GLY 1 1 Y 1 A PRO 460 A PRO 2 1 Y 1 A GLY 461 A GLY 3 1 Y 1 A SER 462 A SER 4 1 Y 1 A ALA 463 A ALA 5 1 Y 1 A LEU 464 A LEU 6 1 Y 1 A ARG 465 A ARG 7 1 Y 1 A GLU 466 A GLU 8 1 Y 1 A THR 467 A THR 9 1 Y 1 A MET 550 A MET 92 1 Y 1 A TRP 551 A TRP 93 1 Y 1 A PHE 552 A PHE 94 1 Y 1 A GLY 553 A GLY 95 1 Y 1 A GLU 554 A GLU 96 1 Y 1 A ALA 585 A ALA 127 1 Y 1 A ARG 586 A ARG 128 1 Y 1 A GLY 587 A GLY 129 1 Y 1 A GLY 588 A GLY 130 1 Y 1 A ASN 589 A ASN 131 1 Y 1 A ILE 590 A ILE 132 1 Y 1 A GLY 591 A GLY 133 1 Y 1 A ASP 592 A ASP 134 1 Y 1 A GLY 593 A GLY 135 1 Y 1 A GLY 594 A GLY 136 1 Y 1 A GLY 595 A GLY 137 1 Y 1 A ARG 713 A ARG 255 1 Y 1 A GLN 714 A GLN 256 1 Y 1 A THR 715 A THR 257 1 Y 1 A ASN 716 A ASN 258 1 Y 1 A PRO 717 A PRO 259 1 Y 1 A SER 718 A SER 260 1 Y 1 A ALA 719 A ALA 261 1 Y 1 A MET 720 A MET 262 1 Y 1 A GLU 721 A GLU 263 1 Y 1 A VAL 722 A VAL 264 1 Y 1 A GLU 723 A GLU 265 1 Y 1 A GLU 724 A GLU 266 1 Y 1 A ASP 725 A ASP 267 1 Y 1 A ASP 726 A ASP 268 1 Y 1 A A NZ O LYS HOH 584 901 1.96 1 A A O O PRO HOH 510 902 2.10 1 A A NH2 OD1 ARG ASP 745 749 2.11 1 A A O O HOH HOH 930 973 2.13 1 A A ARG VAL 599 600 146.49 1 A ALA 583 -63.64 1.41 1 A ARG 638 -121.78 -146.17 0.2455 0.2045 0.2067 2.078 30.53 1007 19701 5.11 99.67 0.20 1 FREE R-VALUE 1.35 MOLECULAR REPLACEMENT 29.32 0.90 1.11 5FTJ 2.078 30.53 77 2293 100 0 2116 0.008 2256 1.003 3045 7.296 1930 0.058 337 0.006 387 0.2850 0.2503 2.1880 143 2624 99.00 0.3120 0.2362 2.3250 159 2629 99.00 0.2583 0.2182 2.5045 137 2649 100.00 0.2835 0.2286 2.7564 133 2684 100.00 0.2439 0.2208 3.1549 119 2717 100.00 0.2406 0.1981 3.9734 166 2656 100.00 0.2263 0.1854 30.5370 150 2735 100.00 2.078 30.53 6G2X 19706 1 17.74 10.3 99.63 2.078 2.153 1 refinement PHENIX (1.12_2829: ???) data reduction XDS data scaling XDS phasing PHASER N Crystal structure of the p97 D2 domain in a helical split-washer conformation 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 5 N N 6 N N 7 N N A THR 475 A THR 17 HELX_P A ILE 479 A ILE 21 5 AA1 5 A LEU 482 A LEU 24 HELX_P A HIS 499 A HIS 41 1 AA2 18 A HIS 499 A HIS 41 HELX_P A GLY 507 A GLY 49 1 AA3 9 A GLY 523 A GLY 65 HELX_P A CYS 535 A CYS 77 1 AA4 13 A PRO 545 A PRO 87 HELX_P A LEU 548 A LEU 90 5 AA5 4 A GLU 556 A GLU 98 HELX_P A ALA 569 A ALA 111 1 AA6 14 A GLU 578 A GLU 120 HELX_P A ALA 583 A ALA 125 1 AA7 6 A ALA 597 A ALA 139 HELX_P A GLY 610 A GLY 152 1 AA8 14 A SER 612 A SER 154 HELX_P A LYS 615 A LYS 157 5 AA9 4 A ARG 625 A ARG 167 HELX_P A ILE 629 A ILE 171 5 AB1 5 A ASP 630 A ASP 172 HELX_P A ARG 635 A ARG 177 5 AB2 6 A ASP 649 A ASP 191 HELX_P A LEU 661 A LEU 203 1 AB3 13 A ASP 671 A ASP 213 HELX_P A MET 678 A MET 220 1 AB4 8 A SER 683 A SER 225 HELX_P A GLU 710 A GLU 252 1 AB5 28 A ARG 732 A ARG 274 HELX_P A MET 740 A MET 282 1 AB6 9 A ARG 741 A ARG 283 HELX_P A ALA 743 A ALA 285 5 AB7 3 A SER 748 A SER 290 HELX_P A LEU 762 A LEU 304 1 AB8 15 metalc 2.044 A A ASN 624 A OD1 ASN 166 1_555 A NA 810 K NA NA 1_555 metalc 3.096 A ADP 809 J O3B ADP 1_555 A NA 810 K NA NA 1_555 metalc 3.117 A NA 810 K NA NA 1_555 A HOH 972 L O HOH 1_555 HYDROLASE ATPase, p97, protein degradation, hydrolase A ALA 570 A ALA 112 1 A PRO 571 A PRO 113 -5.14 TERA_HUMAN UNP 1 462 P55072 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS IKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 462 764 6G2X 462 764 P55072 A 1 4 306 1 expression tag GLY 459 6G2X A P55072 UNP 1 1 expression tag PRO 460 6G2X A P55072 UNP 2 1 expression tag GLY 461 6G2X A P55072 UNP 3 5 parallel parallel parallel parallel A ASN 538 A ASN 80 A LYS 543 A LYS 85 A CYS 572 A CYS 114 A ASP 577 A ASP 119 A VAL 617 A VAL 159 A THR 623 A THR 165 A GLY 513 A GLY 55 A TYR 517 A TYR 59 A LEU 642 A LEU 184 A TYR 644 A TYR 186 binding site for residue MPD A 801 A MPD 801 Software 3 binding site for residue MPD A 802 A MPD 802 Software 3 binding site for residue MPD A 803 A MPD 803 Software 4 binding site for residue MPD A 804 A MPD 804 Software 3 binding site for residue DMS A 806 A DMS 806 Software 3 binding site for residue EJQ A 807 A EJQ 807 Software 7 binding site for residue EJQ A 808 A EJQ 808 Software 8 binding site for residue ADP A 809 A ADP 809 Software 16 binding site for residue NA A 810 A NA 810 Software 4 A PRO 665 A PRO 207 3 1_555 A VAL 728 A VAL 270 3 1_555 A PRO 729 A PRO 271 3 1_555 A LEU 579 A LEU 121 3 1_555 A ILE 629 A ILE 171 3 1_555 A ASP 630 A ASP 172 3 1_555 A ASN 616 A ASN 158 4 2_444 A ASP 671 A ASP 213 4 1_555 A ARG 733 A ARG 275 4 1_555 A PHE 736 A PHE 278 4 1_555 A CYS 535 A CYS 77 3 1_555 A PRO 571 A PRO 113 3 1_555 A ASN 616 A ASN 158 3 1_555 A ASN 680 A ASN 222 3 1_555 A GLY 681 A GLY 223 3 1_555 A HOH 946 L HOH 3 1_555 A ARG 625 A ARG 167 7 1_555 A PRO 626 A PRO 168 7 1_555 A ASP 627 A ASP 169 7 1_555 A ASP 751 A ASP 293 7 1_555 A LYS 754 A LYS 296 7 1_555 A TYR 755 A TYR 297 7 1_555 A EJQ 808 I EJQ 7 1_555 A LEU 504 A LEU 46 8 4_544 A LYS 505 A LYS 47 8 4_544 A LYS 754 A LYS 296 8 1_555 A MET 757 A MET 299 8 1_555 A PHE 758 A PHE 300 8 1_555 A THR 761 A THR 303 8 1_555 A LEU 762 A LEU 304 8 1_555 A EJQ 807 H EJQ 8 1_555 A ASP 478 A ASP 20 16 1_555 A ILE 479 A ILE 21 16 1_555 A GLY 480 A GLY 22 16 1_555 A GLY 521 A GLY 63 16 1_555 A CYS 522 A CYS 64 16 1_555 A GLY 523 A GLY 65 16 1_555 A LYS 524 A LYS 66 16 1_555 A THR 525 A THR 67 16 1_555 A LEU 526 A LEU 68 16 1_555 A ILE 656 A ILE 198 16 1_555 A GLY 684 A GLY 226 16 1_555 A ALA 685 A ALA 227 16 1_555 A THR 688 A THR 230 16 1_555 A NA 810 K NA 16 1_555 A HOH 913 L HOH 16 1_555 A HOH 928 L HOH 16 1_555 A PRO 520 A PRO 62 4 1_555 A LYS 524 A LYS 66 4 1_555 A ASN 624 A ASN 166 4 1_555 A ADP 809 J ADP 4 1_555 169 P 61