0.007995
0.000000
0.000000
0.000000
0.005468
0.000000
0.000000
0.000000
0.013375
0.00000
0.00000
0.00000
Ruff, M.
Levy, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
125.078
182.875
74.767
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C7 H13 N3 O6 S
267.260
(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide
avibactam, bound form; NXL104, bound form
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
O
N
237
N
C
N
238
N
N
N
239
N
C
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
C
N
245
N
C
N
246
R
C
N
247
N
N
N
248
N
O
N
249
N
S
N
250
N
O
N
251
N
O
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
R
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
N
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
doub
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
62
4742
4754
10.1021/acs.jmedchem.9b00338
30995398
Structural Basis for E. coli Penicillin Binding Protein (PBP) 2 Inhibition, a Platform for Drug Design.
2019
0000-0001-5451-6377
10.2210/pdb6g9f/pdb
pdb_00006g9f
100
1
PIXEL
2018-02-08
DECTRIS EIGER R 4M
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-X
The Ser 330 in the structure is modified covalently and is named (S31)
62809.215
Peptidoglycan D,D-transpeptidase MrdA
3.4.16.4
1
man
polymer
267.260
(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide
1
syn
non-polymer
18.015
water
123
nat
water
Penicillin-binding protein 2,PBP-2
no
no
GPNRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPV
KTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYY
EDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDP
NLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWG
HGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIG
QGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYF
ASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLG
D
GPNRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPV
KTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYY
EDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDP
NLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWG
HGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIG
QGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYF
ASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLG
D
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
561
mrdA, pbpA, b0635, JW0630
83333
Escherichia coli K-12
511693
Escherichia coli BL21
Biological sequence
1
3.38
63.56
VAPOR DIFFUSION, HANGING DROP
8.5
0.1 M TrisBase / Bicine pH 8,5 ; 0.1 M [Carboxylic acids mix (0.02 M Sodium formate ; 0.02 M Ammonium acetate ; 0.02 M Sodium citrate tribasic dihydrate ; 0.02 M Sodium potassium tartrate tetrahydrate ; 0.02 M Sodium oxamate) ; 24 % Glycerol ; 12 % PEG 4000] equilibrated against 2.0 M NaCl
300
entity_src_gen
struct_ref
struct_ref_seq
struct_ref_seq_dif
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Source and taxonomy
Data collection
Database references
Refinement description
Structure summary
1
0
2019-05-22
1
1
2020-02-05
1
2
2024-01-17
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_scientific_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBE
Y
PDBE
2018-04-10
REL
REL
1
A
O
HOH
822
6.57
1
A
O
HOH
823
6.84
NXL
(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide
HOH
water
6G9S
PDB
experimental model
ERQ
1330
2
NXL
NXL
1330
A
HOH
701
3
HOH
HOH
701
A
HOH
702
3
HOH
HOH
702
A
HOH
703
3
HOH
HOH
703
A
HOH
704
3
HOH
HOH
704
A
HOH
705
3
HOH
HOH
705
A
HOH
706
3
HOH
HOH
706
A
HOH
707
3
HOH
HOH
707
A
HOH
708
3
HOH
HOH
708
A
HOH
709
3
HOH
HOH
709
A
HOH
710
3
HOH
HOH
710
A
HOH
711
3
HOH
HOH
711
A
HOH
712
3
HOH
HOH
712
A
HOH
713
3
HOH
HOH
713
A
HOH
714
3
HOH
HOH
714
A
HOH
715
3
HOH
HOH
715
A
HOH
716
3
HOH
HOH
716
A
HOH
717
3
HOH
HOH
717
A
HOH
718
3
HOH
HOH
718
A
HOH
719
3
HOH
HOH
719
A
HOH
720
3
HOH
HOH
720
A
HOH
721
3
HOH
HOH
721
A
HOH
722
3
HOH
HOH
722
A
HOH
723
3
HOH
HOH
723
A
HOH
724
3
HOH
HOH
724
A
HOH
725
3
HOH
HOH
725
A
HOH
726
3
HOH
HOH
726
A
HOH
727
3
HOH
HOH
727
A
HOH
728
3
HOH
HOH
728
A
HOH
729
3
HOH
HOH
729
A
HOH
730
3
HOH
HOH
730
A
HOH
731
3
HOH
HOH
731
A
HOH
732
3
HOH
HOH
732
A
HOH
733
3
HOH
HOH
733
A
HOH
734
3
HOH
HOH
734
A
HOH
735
3
HOH
HOH
735
A
HOH
736
3
HOH
HOH
736
A
HOH
737
3
HOH
HOH
737
A
HOH
738
3
HOH
HOH
738
A
HOH
739
3
HOH
HOH
739
A
HOH
740
3
HOH
HOH
740
A
HOH
741
3
HOH
HOH
741
A
HOH
742
3
HOH
HOH
742
A
HOH
743
3
HOH
HOH
743
A
HOH
744
3
HOH
HOH
744
A
HOH
745
3
HOH
HOH
745
A
HOH
746
3
HOH
HOH
746
A
HOH
747
3
HOH
HOH
747
A
HOH
748
3
HOH
HOH
748
A
HOH
749
3
HOH
HOH
749
A
HOH
750
3
HOH
HOH
750
A
HOH
751
3
HOH
HOH
751
A
HOH
752
3
HOH
HOH
752
A
HOH
753
3
HOH
HOH
753
A
HOH
754
3
HOH
HOH
754
A
HOH
755
3
HOH
HOH
755
A
HOH
756
3
HOH
HOH
756
A
HOH
757
3
HOH
HOH
757
A
HOH
758
3
HOH
HOH
758
A
HOH
759
3
HOH
HOH
759
A
HOH
760
3
HOH
HOH
760
A
HOH
761
3
HOH
HOH
761
A
HOH
762
3
HOH
HOH
762
A
HOH
763
3
HOH
HOH
763
A
HOH
764
3
HOH
HOH
764
A
HOH
765
3
HOH
HOH
765
A
HOH
766
3
HOH
HOH
766
A
HOH
767
3
HOH
HOH
767
A
HOH
768
3
HOH
HOH
768
A
HOH
769
3
HOH
HOH
769
A
HOH
770
3
HOH
HOH
770
A
HOH
771
3
HOH
HOH
771
A
HOH
772
3
HOH
HOH
772
A
HOH
773
3
HOH
HOH
773
A
HOH
774
3
HOH
HOH
774
A
HOH
775
3
HOH
HOH
775
A
HOH
776
3
HOH
HOH
776
A
HOH
777
3
HOH
HOH
777
A
HOH
778
3
HOH
HOH
778
A
HOH
779
3
HOH
HOH
779
A
HOH
780
3
HOH
HOH
780
A
HOH
781
3
HOH
HOH
781
A
HOH
782
3
HOH
HOH
782
A
HOH
783
3
HOH
HOH
783
A
HOH
784
3
HOH
HOH
784
A
HOH
785
3
HOH
HOH
785
A
HOH
786
3
HOH
HOH
786
A
HOH
787
3
HOH
HOH
787
A
HOH
788
3
HOH
HOH
788
A
HOH
789
3
HOH
HOH
789
A
HOH
790
3
HOH
HOH
790
A
HOH
791
3
HOH
HOH
791
A
HOH
792
3
HOH
HOH
792
A
HOH
793
3
HOH
HOH
793
A
HOH
794
3
HOH
HOH
794
A
HOH
795
3
HOH
HOH
795
A
HOH
796
3
HOH
HOH
796
A
HOH
797
3
HOH
HOH
797
A
HOH
798
3
HOH
HOH
798
A
HOH
799
3
HOH
HOH
799
A
HOH
800
3
HOH
HOH
800
A
HOH
801
3
HOH
HOH
801
A
HOH
802
3
HOH
HOH
802
A
HOH
803
3
HOH
HOH
803
A
HOH
804
3
HOH
HOH
804
A
HOH
805
3
HOH
HOH
805
A
HOH
806
3
HOH
HOH
806
A
HOH
807
3
HOH
HOH
807
A
HOH
808
3
HOH
HOH
808
A
HOH
809
3
HOH
HOH
809
A
HOH
810
3
HOH
HOH
810
A
HOH
811
3
HOH
HOH
811
A
HOH
812
3
HOH
HOH
812
A
HOH
813
3
HOH
HOH
813
A
HOH
814
3
HOH
HOH
814
A
HOH
815
3
HOH
HOH
815
A
HOH
816
3
HOH
HOH
816
A
HOH
817
3
HOH
HOH
817
A
HOH
818
3
HOH
HOH
818
A
HOH
819
3
HOH
HOH
819
A
HOH
820
3
HOH
HOH
820
A
HOH
821
3
HOH
HOH
821
A
HOH
822
3
HOH
HOH
822
A
HOH
823
3
HOH
HOH
823
A
n
1
55
A
n
2
56
A
ASN
57
n
3
ASN
57
A
ARG
58
n
4
ARG
58
A
ILE
59
n
5
ILE
59
A
LYS
60
n
6
LYS
60
A
LEU
61
n
7
LEU
61
A
VAL
62
n
8
VAL
62
A
PRO
63
n
9
PRO
63
A
ILE
64
n
10
ILE
64
A
ALA
65
n
11
ALA
65
A
PRO
66
n
12
PRO
66
A
SER
67
n
13
SER
67
A
ARG
68
n
14
ARG
68
A
GLY
69
n
15
GLY
69
A
ILE
70
n
16
ILE
70
A
ILE
71
n
17
ILE
71
A
TYR
72
n
18
TYR
72
A
ASP
73
n
19
ASP
73
A
ARG
74
n
20
ARG
74
A
ASN
75
n
21
ASN
75
A
GLY
76
n
22
GLY
76
A
ILE
77
n
23
ILE
77
A
PRO
78
n
24
PRO
78
A
LEU
79
n
25
LEU
79
A
ALA
80
n
26
ALA
80
A
LEU
81
n
27
LEU
81
A
ASN
82
n
28
ASN
82
A
ARG
83
n
29
ARG
83
A
THR
84
n
30
THR
84
A
ILE
85
n
31
ILE
85
A
TYR
86
n
32
TYR
86
A
GLN
87
n
33
GLN
87
A
ILE
88
n
34
ILE
88
A
GLU
89
n
35
GLU
89
A
MET
90
n
36
MET
90
A
MET
91
n
37
MET
91
A
PRO
92
n
38
PRO
92
A
GLU
93
n
39
GLU
93
A
LYS
94
n
40
LYS
94
A
VAL
95
n
41
VAL
95
A
ASP
96
n
42
ASP
96
A
ASN
97
n
43
ASN
97
A
VAL
98
n
44
VAL
98
A
GLN
99
n
45
GLN
99
A
GLN
100
n
46
GLN
100
A
THR
101
n
47
THR
101
A
LEU
102
n
48
LEU
102
A
ASP
103
n
49
ASP
103
A
ALA
104
n
50
ALA
104
A
LEU
105
n
51
LEU
105
A
ARG
106
n
52
ARG
106
A
SER
107
n
53
SER
107
A
VAL
108
n
54
VAL
108
A
VAL
109
n
55
VAL
109
A
ASP
110
n
56
ASP
110
A
LEU
111
n
57
LEU
111
A
THR
112
n
58
THR
112
A
ASP
113
n
59
ASP
113
A
ASP
114
n
60
ASP
114
A
ASP
115
n
61
ASP
115
A
ILE
116
n
62
ILE
116
A
ALA
117
n
63
ALA
117
A
ALA
118
n
64
ALA
118
A
PHE
119
n
65
PHE
119
A
ARG
120
n
66
ARG
120
A
LYS
121
n
67
LYS
121
A
GLU
122
n
68
GLU
122
A
ARG
123
n
69
ARG
123
A
ALA
124
n
70
ALA
124
A
ARG
125
n
71
ARG
125
A
SER
126
n
72
SER
126
A
HIS
127
n
73
HIS
127
A
ARG
128
n
74
ARG
128
A
PHE
129
n
75
PHE
129
A
THR
130
n
76
THR
130
A
SER
131
n
77
SER
131
A
ILE
132
n
78
ILE
132
A
PRO
133
n
79
PRO
133
A
VAL
134
n
80
VAL
134
A
LYS
135
n
81
LYS
135
A
THR
136
n
82
THR
136
A
ASN
137
n
83
ASN
137
A
LEU
138
n
84
LEU
138
A
THR
139
n
85
THR
139
A
GLU
140
n
86
GLU
140
A
VAL
141
n
87
VAL
141
A
GLN
142
n
88
GLN
142
A
VAL
143
n
89
VAL
143
A
ALA
144
n
90
ALA
144
A
ARG
145
n
91
ARG
145
A
PHE
146
n
92
PHE
146
A
ALA
147
n
93
ALA
147
A
VAL
148
n
94
VAL
148
A
ASN
149
n
95
ASN
149
A
GLN
150
n
96
GLN
150
A
TYR
151
n
97
TYR
151
A
ARG
152
n
98
ARG
152
A
PHE
153
n
99
PHE
153
A
PRO
154
n
100
PRO
154
A
GLY
155
n
101
GLY
155
A
VAL
156
n
102
VAL
156
A
GLU
157
n
103
GLU
157
A
VAL
158
n
104
VAL
158
A
LYS
159
n
105
LYS
159
A
GLY
160
n
106
GLY
160
A
TYR
161
n
107
TYR
161
A
LYS
162
n
108
LYS
162
A
ARG
163
n
109
ARG
163
A
ARG
164
n
110
ARG
164
A
TYR
165
n
111
TYR
165
A
TYR
166
n
112
TYR
166
A
PRO
167
n
113
PRO
167
A
TYR
168
n
114
TYR
168
A
GLY
169
n
115
GLY
169
A
SER
170
n
116
SER
170
A
ALA
171
n
117
ALA
171
A
LEU
172
n
118
LEU
172
A
THR
173
n
119
THR
173
A
HIS
174
n
120
HIS
174
A
VAL
175
n
121
VAL
175
A
ILE
176
n
122
ILE
176
A
GLY
177
n
123
GLY
177
A
TYR
178
n
124
TYR
178
A
VAL
179
n
125
VAL
179
A
SER
180
n
126
SER
180
A
LYS
181
n
127
LYS
181
A
ILE
182
n
128
ILE
182
A
ASN
183
n
129
ASN
183
A
ASP
184
n
130
ASP
184
A
LYS
185
n
131
LYS
185
A
ASP
186
n
132
ASP
186
A
VAL
187
n
133
VAL
187
A
GLU
188
n
134
GLU
188
A
ARG
189
n
135
ARG
189
A
LEU
190
n
136
LEU
190
A
ASN
191
n
137
ASN
191
A
ASN
192
n
138
ASN
192
A
ASP
193
n
139
ASP
193
A
GLY
194
n
140
GLY
194
A
LYS
195
n
141
LYS
195
A
LEU
196
n
142
LEU
196
A
ALA
197
n
143
ALA
197
A
ASN
198
n
144
ASN
198
A
TYR
199
n
145
TYR
199
A
ALA
200
n
146
ALA
200
A
ALA
201
n
147
ALA
201
A
THR
202
n
148
THR
202
A
HIS
203
n
149
HIS
203
A
ASP
204
n
150
ASP
204
A
ILE
205
n
151
ILE
205
A
GLY
206
n
152
GLY
206
A
LYS
207
n
153
LYS
207
A
LEU
208
n
154
LEU
208
A
GLY
209
n
155
GLY
209
A
ILE
210
n
156
ILE
210
A
GLU
211
n
157
GLU
211
A
ARG
212
n
158
ARG
212
A
TYR
213
n
159
TYR
213
A
TYR
214
n
160
TYR
214
A
GLU
215
n
161
GLU
215
A
ASP
216
n
162
ASP
216
A
VAL
217
n
163
VAL
217
A
LEU
218
n
164
LEU
218
A
HIS
219
n
165
HIS
219
A
GLY
220
n
166
GLY
220
A
GLN
221
n
167
GLN
221
A
THR
222
n
168
THR
222
A
GLY
223
n
169
GLY
223
A
TYR
224
n
170
TYR
224
A
GLU
225
n
171
GLU
225
A
GLU
226
n
172
GLU
226
A
VAL
227
n
173
VAL
227
A
GLU
228
n
174
GLU
228
A
VAL
229
n
175
VAL
229
A
ASN
230
n
176
ASN
230
A
ASN
231
n
177
ASN
231
A
ARG
232
n
178
ARG
232
A
GLY
233
n
179
GLY
233
A
ARG
234
n
180
ARG
234
A
VAL
235
n
181
VAL
235
A
ILE
236
n
182
ILE
236
A
ARG
237
n
183
ARG
237
A
GLN
238
n
184
GLN
238
A
LEU
239
n
185
LEU
239
A
LYS
240
n
186
LYS
240
A
GLU
241
n
187
GLU
241
A
VAL
242
n
188
VAL
242
A
PRO
243
n
189
PRO
243
A
PRO
244
n
190
PRO
244
A
GLN
245
n
191
GLN
245
A
ALA
246
n
192
ALA
246
A
GLY
247
n
193
GLY
247
A
HIS
248
n
194
HIS
248
A
ASP
249
n
195
ASP
249
A
ILE
250
n
196
ILE
250
A
TYR
251
n
197
TYR
251
A
LEU
252
n
198
LEU
252
A
THR
253
n
199
THR
253
A
LEU
254
n
200
LEU
254
A
ASP
255
n
201
ASP
255
A
LEU
256
n
202
LEU
256
A
LYS
257
n
203
LYS
257
A
LEU
258
n
204
LEU
258
A
GLN
259
n
205
GLN
259
A
GLN
260
n
206
GLN
260
A
TYR
261
n
207
TYR
261
A
ILE
262
n
208
ILE
262
A
GLU
263
n
209
GLU
263
A
THR
264
n
210
THR
264
A
LEU
265
n
211
LEU
265
A
LEU
266
n
212
LEU
266
A
ALA
267
n
213
ALA
267
A
GLY
268
n
214
GLY
268
A
SER
269
n
215
SER
269
A
ARG
270
n
216
ARG
270
A
ALA
271
n
217
ALA
271
A
ALA
272
n
218
ALA
272
A
VAL
273
n
219
VAL
273
A
VAL
274
n
220
VAL
274
A
VAL
275
n
221
VAL
275
A
THR
276
n
222
THR
276
A
ASP
277
n
223
ASP
277
A
PRO
278
n
224
PRO
278
A
ARG
279
n
225
ARG
279
A
THR
280
n
226
THR
280
A
GLY
281
n
227
GLY
281
A
GLY
282
n
228
GLY
282
A
VAL
283
n
229
VAL
283
A
LEU
284
n
230
LEU
284
A
ALA
285
n
231
ALA
285
A
LEU
286
n
232
LEU
286
A
VAL
287
n
233
VAL
287
A
SER
288
n
234
SER
288
A
THR
289
n
235
THR
289
A
PRO
290
n
236
PRO
290
A
SER
291
n
237
SER
291
A
TYR
292
n
238
TYR
292
A
ASP
293
n
239
ASP
293
A
PRO
294
n
240
PRO
294
A
ASN
295
n
241
ASN
295
A
LEU
296
n
242
LEU
296
A
PHE
297
n
243
PHE
297
A
VAL
298
n
244
VAL
298
A
ASP
299
n
245
ASP
299
A
GLY
300
n
246
GLY
300
A
ILE
301
n
247
ILE
301
A
SER
302
n
248
SER
302
A
SER
303
n
249
SER
303
A
LYS
304
n
250
LYS
304
A
ASP
305
n
251
ASP
305
A
TYR
306
n
252
TYR
306
A
SER
307
n
253
SER
307
A
ALA
308
n
254
ALA
308
A
LEU
309
n
255
LEU
309
A
LEU
310
n
256
LEU
310
A
ASN
311
n
257
ASN
311
A
ASP
312
n
258
ASP
312
A
PRO
313
n
259
PRO
313
A
ASN
314
n
260
ASN
314
A
THR
315
n
261
THR
315
A
PRO
316
n
262
PRO
316
A
LEU
317
n
263
LEU
317
A
VAL
318
n
264
VAL
318
A
ASN
319
n
265
ASN
319
A
ARG
320
n
266
ARG
320
A
ALA
321
n
267
ALA
321
A
THR
322
n
268
THR
322
A
GLN
323
n
269
GLN
323
A
GLY
324
n
270
GLY
324
A
VAL
325
n
271
VAL
325
A
TYR
326
n
272
TYR
326
A
PRO
327
n
273
PRO
327
A
PRO
328
n
274
PRO
328
A
ALA
329
n
275
ALA
329
A
SER
330
n
276
SER
330
A
THR
331
n
277
THR
331
A
VAL
332
n
278
VAL
332
A
LYS
333
n
279
LYS
333
A
PRO
334
n
280
PRO
334
A
TYR
335
n
281
TYR
335
A
VAL
336
n
282
VAL
336
A
ALA
337
n
283
ALA
337
A
VAL
338
n
284
VAL
338
A
SER
339
n
285
SER
339
A
ALA
340
n
286
ALA
340
A
LEU
341
n
287
LEU
341
A
SER
342
n
288
SER
342
A
ALA
343
n
289
ALA
343
A
GLY
344
n
290
GLY
344
A
VAL
345
n
291
VAL
345
A
ILE
346
n
292
ILE
346
A
THR
347
n
293
THR
347
A
ARG
348
n
294
ARG
348
A
ASN
349
n
295
ASN
349
A
THR
350
n
296
THR
350
A
THR
351
n
297
THR
351
A
LEU
352
n
298
LEU
352
A
PHE
353
n
299
PHE
353
A
ASP
354
n
300
ASP
354
A
PRO
355
n
301
PRO
355
A
GLY
356
n
302
GLY
356
A
TRP
357
n
303
TRP
357
A
TRP
358
n
304
TRP
358
A
GLN
359
n
305
GLN
359
A
LEU
360
n
306
LEU
360
A
PRO
361
n
307
PRO
361
A
GLY
362
n
308
GLY
362
A
SER
363
n
309
SER
363
A
GLU
364
n
310
GLU
364
A
LYS
365
n
311
LYS
365
A
ARG
366
n
312
ARG
366
A
TYR
367
n
313
TYR
367
A
ARG
368
n
314
ARG
368
A
ASP
369
n
315
ASP
369
A
TRP
370
n
316
TRP
370
A
LYS
371
n
317
LYS
371
A
LYS
372
n
318
LYS
372
A
TRP
373
n
319
TRP
373
A
GLY
374
n
320
GLY
374
A
HIS
375
n
321
HIS
375
A
GLY
376
n
322
GLY
376
A
ARG
377
n
323
ARG
377
A
LEU
378
n
324
LEU
378
A
ASN
379
n
325
ASN
379
A
VAL
380
n
326
VAL
380
A
THR
381
n
327
THR
381
A
ARG
382
n
328
ARG
382
A
SER
383
n
329
SER
383
A
LEU
384
n
330
LEU
384
A
GLU
385
n
331
GLU
385
A
GLU
386
n
332
GLU
386
A
SER
387
n
333
SER
387
A
ALA
388
n
334
ALA
388
A
ASP
389
n
335
ASP
389
A
THR
390
n
336
THR
390
A
PHE
391
n
337
PHE
391
A
PHE
392
n
338
PHE
392
A
TYR
393
n
339
TYR
393
A
GLN
394
n
340
GLN
394
A
VAL
395
n
341
VAL
395
A
ALA
396
n
342
ALA
396
A
TYR
397
n
343
TYR
397
A
ASP
398
n
344
ASP
398
A
MET
399
n
345
MET
399
A
GLY
400
n
346
GLY
400
A
ILE
401
n
347
ILE
401
A
ASP
402
n
348
ASP
402
A
ARG
403
n
349
ARG
403
A
LEU
404
n
350
LEU
404
A
SER
405
n
351
SER
405
A
GLU
406
n
352
GLU
406
A
TRP
407
n
353
TRP
407
A
MET
408
n
354
MET
408
A
GLY
409
n
355
GLY
409
A
LYS
410
n
356
LYS
410
A
PHE
411
n
357
PHE
411
A
GLY
412
n
358
GLY
412
A
TYR
413
n
359
TYR
413
A
GLY
414
n
360
GLY
414
A
HIS
415
n
361
HIS
415
A
TYR
416
n
362
TYR
416
A
THR
417
n
363
THR
417
A
GLY
418
n
364
GLY
418
A
ILE
419
n
365
ILE
419
A
ASP
420
n
366
ASP
420
A
LEU
421
n
367
LEU
421
A
ALA
422
n
368
ALA
422
A
GLU
423
n
369
GLU
423
A
GLU
424
n
370
GLU
424
A
ARG
425
n
371
ARG
425
A
SER
426
n
372
SER
426
A
GLY
427
n
373
GLY
427
A
ASN
428
n
374
ASN
428
A
MET
429
n
375
MET
429
A
PRO
430
n
376
PRO
430
A
THR
431
n
377
THR
431
A
ARG
432
n
378
ARG
432
A
GLU
433
n
379
GLU
433
A
TRP
434
n
380
TRP
434
A
LYS
435
n
381
LYS
435
A
GLN
436
n
382
GLN
436
A
LYS
437
n
383
LYS
437
A
ARG
438
n
384
ARG
438
A
PHE
439
n
385
PHE
439
A
LYS
440
n
386
LYS
440
A
LYS
441
n
387
LYS
441
A
PRO
442
n
388
PRO
442
A
TRP
443
n
389
TRP
443
A
TYR
444
n
390
TYR
444
A
GLN
445
n
391
GLN
445
A
GLY
446
n
392
GLY
446
A
ASP
447
n
393
ASP
447
A
THR
448
n
394
THR
448
A
ILE
449
n
395
ILE
449
A
PRO
450
n
396
PRO
450
A
VAL
451
n
397
VAL
451
A
GLY
452
n
398
GLY
452
A
ILE
453
n
399
ILE
453
A
GLY
454
n
400
GLY
454
A
GLN
455
n
401
GLN
455
A
GLY
456
n
402
GLY
456
A
TYR
457
n
403
TYR
457
A
TRP
458
n
404
TRP
458
A
THR
459
n
405
THR
459
A
ALA
460
n
406
ALA
460
A
THR
461
n
407
THR
461
A
PRO
462
n
408
PRO
462
A
ILE
463
n
409
ILE
463
A
GLN
464
n
410
GLN
464
A
MET
465
n
411
MET
465
A
SER
466
n
412
SER
466
A
LYS
467
n
413
LYS
467
A
ALA
468
n
414
ALA
468
A
LEU
469
n
415
LEU
469
A
MET
470
n
416
MET
470
A
ILE
471
n
417
ILE
471
A
LEU
472
n
418
LEU
472
A
ILE
473
n
419
ILE
473
A
ASN
474
n
420
ASN
474
A
ASP
475
n
421
ASP
475
A
GLY
476
n
422
GLY
476
A
ILE
477
n
423
ILE
477
A
VAL
478
n
424
VAL
478
A
LYS
479
n
425
LYS
479
A
VAL
480
n
426
VAL
480
A
PRO
481
n
427
PRO
481
A
HIS
482
n
428
HIS
482
A
LEU
483
n
429
LEU
483
A
LEU
484
n
430
LEU
484
A
MET
485
n
431
MET
485
A
SER
486
n
432
SER
486
A
THR
487
n
433
THR
487
A
ALA
488
n
434
ALA
488
A
GLU
489
n
435
GLU
489
A
ASP
490
n
436
ASP
490
A
GLY
491
n
437
GLY
491
A
LYS
492
n
438
LYS
492
A
GLN
493
n
439
GLN
493
A
VAL
494
n
440
VAL
494
A
PRO
495
n
441
PRO
495
A
TRP
496
n
442
TRP
496
A
VAL
497
n
443
VAL
497
A
GLN
498
n
444
GLN
498
A
PRO
499
n
445
PRO
499
A
HIS
500
n
446
HIS
500
A
GLU
501
n
447
GLU
501
A
PRO
502
n
448
PRO
502
A
PRO
503
n
449
PRO
503
A
VAL
504
n
450
VAL
504
A
GLY
505
n
451
GLY
505
A
ASP
506
n
452
ASP
506
A
ILE
507
n
453
ILE
507
A
HIS
508
n
454
HIS
508
A
SER
509
n
455
SER
509
A
GLY
510
n
456
GLY
510
A
TYR
511
n
457
TYR
511
A
TRP
512
n
458
TRP
512
A
GLU
513
n
459
GLU
513
A
LEU
514
n
460
LEU
514
A
ALA
515
n
461
ALA
515
A
LYS
516
n
462
LYS
516
A
ASP
517
n
463
ASP
517
A
GLY
518
n
464
GLY
518
A
MET
519
n
465
MET
519
A
TYR
520
n
466
TYR
520
A
GLY
521
n
467
GLY
521
A
VAL
522
n
468
VAL
522
A
ALA
523
n
469
ALA
523
A
ASN
524
n
470
ASN
524
A
ARG
525
n
471
ARG
525
A
PRO
526
n
472
PRO
526
A
ASN
527
n
473
ASN
527
A
GLY
528
n
474
GLY
528
A
THR
529
n
475
THR
529
A
ALA
530
n
476
ALA
530
A
HIS
531
n
477
HIS
531
A
LYS
532
n
478
LYS
532
A
TYR
533
n
479
TYR
533
A
PHE
534
n
480
PHE
534
A
ALA
535
n
481
ALA
535
A
SER
536
n
482
SER
536
A
ALA
537
n
483
ALA
537
A
PRO
538
n
484
PRO
538
A
TYR
539
n
485
TYR
539
A
LYS
540
n
486
LYS
540
A
ILE
541
n
487
ILE
541
A
ALA
542
n
488
ALA
542
A
ALA
543
n
489
ALA
543
A
LYS
544
n
490
LYS
544
A
SER
545
n
491
SER
545
A
GLY
546
n
492
GLY
546
A
THR
547
n
493
THR
547
A
ALA
548
n
494
ALA
548
A
GLN
549
n
495
GLN
549
A
n
496
550
A
n
497
551
A
n
498
552
A
n
499
553
A
n
500
554
A
n
501
555
A
n
502
556
A
n
503
557
A
n
504
558
A
n
505
559
A
n
506
560
A
n
507
561
A
n
508
562
A
n
509
563
A
n
510
564
A
n
511
565
A
n
512
566
A
n
513
567
A
LEU
568
n
514
LEU
568
A
ARG
569
n
515
ARG
569
A
ASP
570
n
516
ASP
570
A
HIS
571
n
517
HIS
571
A
LYS
572
n
518
LYS
572
A
LEU
573
n
519
LEU
573
A
MET
574
n
520
MET
574
A
THR
575
n
521
THR
575
A
ALA
576
n
522
ALA
576
A
PHE
577
n
523
PHE
577
A
ALA
578
n
524
ALA
578
A
PRO
579
n
525
PRO
579
A
TYR
580
n
526
TYR
580
A
ASN
581
n
527
ASN
581
A
ASN
582
n
528
ASN
582
A
PRO
583
n
529
PRO
583
A
GLN
584
n
530
GLN
584
A
VAL
585
n
531
VAL
585
A
ALA
586
n
532
ALA
586
A
VAL
587
n
533
VAL
587
A
ALA
588
n
534
ALA
588
A
MET
589
n
535
MET
589
A
ILE
590
n
536
ILE
590
A
LEU
591
n
537
LEU
591
A
GLU
592
n
538
GLU
592
A
ASN
593
n
539
ASN
593
A
GLY
594
n
540
GLY
594
A
GLY
595
n
541
GLY
595
A
ALA
596
n
542
ALA
596
A
GLY
597
n
543
GLY
597
A
PRO
598
n
544
PRO
598
A
ALA
599
n
545
ALA
599
A
VAL
600
n
546
VAL
600
A
GLY
601
n
547
GLY
601
A
THR
602
n
548
THR
602
A
LEU
603
n
549
LEU
603
A
MET
604
n
550
MET
604
A
ARG
605
n
551
ARG
605
A
GLN
606
n
552
GLN
606
A
ILE
607
n
553
ILE
607
A
LEU
608
n
554
LEU
608
A
ASP
609
n
555
ASP
609
A
HIS
610
n
556
HIS
610
A
ILE
611
n
557
ILE
611
A
MET
612
n
558
MET
612
A
LEU
613
n
559
LEU
613
A
n
560
614
A
n
561
615
A
1.5106
1.4841
0.2467
1.9455
0.0109
0.0129
0.0350
0.0046
0.0023
-0.0278
-0.0026
0.0460
0.0582
-0.0198
-0.0001
0.3710
-0.0529
-0.0141
0.3825
0.0071
0.3007
refined
28.9950
55.2310
38.5428
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
ALL
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
0
0
24270
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
60
A
N
LYS
6
A
O
VAL
227
A
O
VAL
173
A
N
GLU
226
A
N
GLU
172
A
O
LEU
239
A
O
LEU
185
A
O
VAL
134
A
O
VAL
80
A
N
ILE
88
A
N
ILE
34
A
N
ARG
83
A
N
ARG
29
A
O
ARG
163
A
O
ARG
109
A
O
VAL
134
A
O
VAL
80
A
N
ILE
88
A
N
ILE
34
A
O
LEU
79
A
O
LEU
25
A
N
ILE
71
A
N
ILE
17
A
N
TYR
72
A
N
TYR
18
A
O
LEU
252
A
O
LEU
198
A
N
TYR
251
A
N
TYR
197
A
O
MET
485
A
O
MET
431
A
N
THR
487
A
N
THR
433
A
O
VAL
494
A
O
VAL
440
A
N
SER
180
A
N
SER
126
A
O
ILE
205
A
O
ILE
151
A
N
GLN
221
A
N
GLN
167
A
O
GLN
245
A
O
GLN
191
A
O
ALA
285
A
O
ALA
231
A
N
VAL
275
A
N
VAL
221
A
N
THR
276
A
N
THR
222
A
O
ALA
586
A
O
ALA
532
A
O
LEU
591
A
O
LEU
537
A
N
LYS
572
A
N
LYS
518
A
O
LEU
573
A
O
LEU
519
A
N
GLY
546
A
N
GLY
492
A
N
LEU
352
A
N
LEU
298
A
O
LEU
378
A
O
LEU
324
A
N
TRP
358
A
N
TRP
304
A
O
TYR
367
A
O
TYR
313
1
A
HOH
734
C
HOH
1
A
HOH
770
C
HOH
1
A
HOH
796
C
HOH
1
A
HOH
808
C
HOH
1
A
GLY
55
A
GLY
1
1
Y
1
A
PRO
56
A
PRO
2
1
Y
1
A
VAL
550
A
VAL
496
1
Y
1
A
PHE
551
A
PHE
497
1
Y
1
A
GLY
552
A
GLY
498
1
Y
1
A
LEU
553
A
LEU
499
1
Y
1
A
LYS
554
A
LYS
500
1
Y
1
A
ALA
555
A
ALA
501
1
Y
1
A
ASN
556
A
ASN
502
1
Y
1
A
GLU
557
A
GLU
503
1
Y
1
A
THR
558
A
THR
504
1
Y
1
A
TYR
559
A
TYR
505
1
Y
1
A
ASN
560
A
ASN
506
1
Y
1
A
ALA
561
A
ALA
507
1
Y
1
A
HIS
562
A
HIS
508
1
Y
1
A
LYS
563
A
LYS
509
1
Y
1
A
ILE
564
A
ILE
510
1
Y
1
A
ALA
565
A
ALA
511
1
Y
1
A
GLU
566
A
GLU
512
1
Y
1
A
ARG
567
A
ARG
513
1
Y
1
A
GLY
614
A
GLY
560
1
Y
1
A
ASP
615
A
ASP
561
1
Y
1
A
ARG
125
-65.18
31.45
1
A
SER
291
-113.75
-160.05
1
A
THR
315
39.90
67.12
1
A
ALA
329
51.78
-137.26
1
A
ASP
420
-91.14
55.41
1
A
GLN
455
-122.71
-144.19
1
A
GLU
489
73.19
107.95
0.248
0.199
0.201
2.35
39.01
3754
35639
5.600
97.1
0.360
1
FREE R-VALUE
1.330
MOLECULAR REPLACEMENT
28.040
0.90
1.11
6G9S
2.35
39.01
123
4402
17
0
4262
0.008
4386
0.971
5965
6.285
2622
0.053
646
0.007
774
0.3611
0.3194
2.3795
104
1817
77.00
0.3192
0.3223
2.4108
129
2203
89.00
0.3670
0.3243
2.4438
135
2208
94.00
0.4203
0.3173
2.4787
144
2394
98.00
0.3142
0.3072
2.5157
139
2419
99.00
0.3395
0.3134
2.5550
140
2368
99.00
0.3536
0.3044
2.5969
142
2395
99.00
0.3335
0.3025
2.6417
140
2413
100.00
0.3785
0.2998
2.6897
146
2415
100.00
0.2805
0.2781
2.7414
142
2384
99.00
0.2845
0.2733
2.7974
142
2347
99.00
0.3032
0.2584
2.8582
145
2449
100.00
0.3075
0.2468
2.9246
143
2391
99.00
0.2881
0.2403
2.9977
146
2427
100.00
0.3224
0.2394
3.0788
139
2363
99.00
0.2938
0.2485
3.1693
144
2424
99.00
0.3064
0.2200
3.2716
137
2354
99.00
0.2964
0.2113
3.3884
139
2405
99.00
0.2393
0.2012
3.5240
139
2358
98.00
0.2468
0.1813
3.6843
140
2360
98.00
0.2452
0.1769
3.8784
137
2361
97.00
0.2564
0.1644
4.1211
134
2324
97.00
0.1969
0.1519
4.4389
139
2390
97.00
0.1616
0.1403
4.8848
139
2292
97.00
0.1975
0.1508
5.5899
145
2333
96.00
0.2271
0.1742
7.0360
143
2331
97.00
0.1781
0.1533
39.0099
142
2343
97.00
2.35
39.005
6G9F
35810
0.996
0.1454
0.06713
0.1607
1
7.87
5.5
98.67
2.546
2.35
2.434
3525
0.419
1.167
2.809
1
5.6
95.57
refinement
PHENIX
(1.11.1_2575: ???)
data reduction
XDS
data scaling
XDS
phasing
PHENIX
N
Structural basis for the inhibition of E. coli PBP2
1
N
N
2
N
N
3
N
N
A
PRO
92
A
PRO
38
HELX_P
A
VAL
95
A
VAL
41
5
AA1
4
A
ASN
97
A
ASN
43
HELX_P
A
ASP
110
A
ASP
56
1
AA2
14
A
THR
112
A
THR
58
HELX_P
A
ARG
125
A
ARG
71
1
AA3
14
A
THR
139
A
THR
85
HELX_P
A
GLN
150
A
GLN
96
1
AA4
12
A
TYR
151
A
TYR
97
HELX_P
A
PHE
153
A
PHE
99
5
AA5
3
A
TYR
168
A
TYR
114
HELX_P
A
ALA
171
A
ALA
117
5
AA6
4
A
LEU
172
A
LEU
118
HELX_P
A
GLY
177
A
GLY
123
1
AA7
6
A
ASN
183
A
ASN
129
HELX_P
A
ASP
193
A
ASP
139
1
AA8
11
A
LYS
195
A
LYS
141
HELX_P
A
ALA
200
A
ALA
146
5
AA9
6
A
LEU
208
A
LEU
154
HELX_P
A
TYR
214
A
TYR
160
1
AB1
7
A
TYR
214
A
TYR
160
HELX_P
A
HIS
219
A
HIS
165
1
AB2
6
A
ASP
255
A
ASP
201
HELX_P
A
LEU
266
A
LEU
212
1
AB3
12
A
PRO
294
A
PRO
240
HELX_P
A
ASP
299
A
ASP
245
1
AB4
6
A
SER
302
A
SER
248
HELX_P
A
ASN
311
A
ASN
257
1
AB5
10
A
ASN
319
A
ASN
265
HELX_P
A
GLY
324
A
GLY
270
1
AB6
6
A
PRO
328
A
PRO
274
HELX_P
A
THR
331
A
THR
277
5
AB7
4
A
VAL
332
A
VAL
278
HELX_P
A
GLY
344
A
GLY
290
1
AB8
13
A
ASN
379
A
ASN
325
HELX_P
A
SER
387
A
SER
333
1
AB9
9
A
ASP
389
A
ASP
335
HELX_P
A
PHE
411
A
PHE
357
1
AC1
23
A
THR
431
A
THR
377
HELX_P
A
LYS
440
A
LYS
386
1
AC2
10
A
TYR
444
A
TYR
390
HELX_P
A
GLY
452
A
GLY
398
1
AC3
9
A
THR
461
A
THR
407
HELX_P
A
ASN
474
A
ASN
420
1
AC4
14
A
GLY
510
A
GLY
456
HELX_P
A
ARG
525
A
ARG
471
1
AC5
16
A
ALA
530
A
ALA
476
HELX_P
A
ALA
535
A
ALA
481
1
AC6
6
A
ASN
593
A
ASN
539
HELX_P
A
GLY
595
A
GLY
541
5
AC7
3
A
ALA
599
A
ALA
545
HELX_P
A
LEU
613
A
LEU
559
1
AC8
15
covale
1.441
none
A
SER
330
A
OG
SER
276
1_555
A
NXL
1330
B
CAN
NXL
1_555
HYDROLASE/ANTIBIOTIC
penicillin binding protein, HYDROLASE-ANTIBIOTIC COMPLEX
A
THR
289
A
THR
235
1
A
PRO
290
A
PRO
236
-1.09
A
GLU
489
A
GLU
435
1
A
ASP
490
A
ASP
436
23.89
A
ALA
578
A
ALA
524
1
A
PRO
579
A
PRO
525
-13.81
MRDA_ECOLI
UNP
1
57
P0AD65
NRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKT
NLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYED
VLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNL
FVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHG
RLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQG
YWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFAS
APYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGD
57
615
6G9F
57
615
P0AD65
A
1
3
561
1
expression tag
GLY
55
6G9F
A
P0AD65
UNP
1
1
expression tag
PRO
56
6G9F
A
P0AD65
UNP
2
3
3
6
2
2
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
58
A
ARG
4
A
ILE
64
A
ILE
10
A
GLY
223
A
GLY
169
A
VAL
229
A
VAL
175
A
VAL
235
A
VAL
181
A
VAL
242
A
VAL
188
A
ILE
132
A
ILE
78
A
LYS
135
A
LYS
81
A
PRO
78
A
PRO
24
A
MET
90
A
MET
36
A
VAL
156
A
VAL
102
A
TYR
165
A
TYR
111
A
ILE
132
A
ILE
78
A
LYS
135
A
LYS
81
A
PRO
78
A
PRO
24
A
MET
90
A
MET
36
A
ILE
71
A
ILE
17
A
TYR
72
A
TYR
18
A
ILE
250
A
ILE
196
A
LEU
252
A
LEU
198
A
LEU
484
A
LEU
430
A
THR
487
A
THR
433
A
VAL
494
A
VAL
440
A
PRO
495
A
PRO
441
A
VAL
179
A
VAL
125
A
LYS
181
A
LYS
127
A
ASP
204
A
ASP
150
A
GLY
206
A
GLY
152
A
GLY
220
A
GLY
166
A
GLN
221
A
GLN
167
A
GLN
245
A
GLN
191
A
ALA
246
A
ALA
192
A
VAL
283
A
VAL
229
A
THR
289
A
THR
235
A
ALA
271
A
ALA
217
A
THR
276
A
THR
222
A
VAL
585
A
VAL
531
A
LEU
591
A
LEU
537
A
HIS
571
A
HIS
517
A
ALA
578
A
ALA
524
A
ALA
542
A
ALA
488
A
ALA
548
A
ALA
494
A
LEU
352
A
LEU
298
A
ASP
354
A
ASP
300
A
GLY
376
A
GLY
322
A
LEU
378
A
LEU
324
A
TRP
357
A
TRP
303
A
GLN
359
A
GLN
305
A
ARG
366
A
ARG
312
A
ARG
368
A
ARG
314
binding site for residue NXL A 1330
A
NXL
1330
Software
12
A
ALA
329
A
ALA
275
12
1_555
A
SER
330
A
SER
276
12
1_555
A
LYS
333
A
LYS
279
12
1_555
A
TRP
370
A
TRP
316
12
1_555
A
SER
387
A
SER
333
12
1_555
A
ASP
389
A
ASP
335
12
1_555
A
ILE
453
A
ILE
399
12
1_555
A
SER
545
A
SER
491
12
1_555
A
GLY
546
A
GLY
492
12
1_555
A
THR
547
A
THR
493
12
1_555
A
HOH
709
C
HOH
12
1_555
A
HOH
738
C
HOH
12
1_555
20
C 2 2 21