HEADER PROTEIN FIBRIL 10-APR-18 6G9G TITLE CRYSTAL STRUCTURE OF THE TASNSS SEGMENT FROM THE R4-R5 LOOP OF THE E. TITLE 2 COLI BIOFILM-ASSOCIATED CSGA CURLI PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CURLIN SUBUNIT; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: AMYLOID SPINE SEGMENT TASNSS FROM CSGA (RESIDUES 129-134) COMPND 5 SECRETED BY E. COLI; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 OTHER_DETAILS: TASNSS FROM CSGA, SYNTHESIZED KEYWDS BACTERIAL FIBRIL FROM E. COLI, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR M.LANDAU,S.PEROV REVDAT 3 08-MAY-24 6G9G 1 REMARK REVDAT 2 23-OCT-19 6G9G 1 JRNL REVDAT 1 24-APR-19 6G9G 0 JRNL AUTH S.PEROV,O.LIDOR,N.SALINAS,N.GOLAN,E.TAYEB-FLIGELMAN, JRNL AUTH 2 M.DESHMUKH,D.WILLBOLD,M.LANDAU JRNL TITL STRUCTURAL INSIGHTS INTO CURLI CSGA CROSS-BETA FIBRIL JRNL TITL 2 ARCHITECTURE INSPIRE REPURPOSING OF ANTI-AMYLOID COMPOUNDS JRNL TITL 3 AS ANTI-BIOFILM AGENTS. JRNL REF PLOS PATHOG. V. 15 07978 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 31469892 JRNL DOI 10.1371/JOURNAL.PPAT.1007978 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.104 REMARK 3 FREE R VALUE : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 39 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 39 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : 1.30000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6G9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 10.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 8.686 REMARK 200 R MERGE (I) : 0.22200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.23 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR CONTAINED 0.2 M LITHIUM REMARK 280 SULFATE, 0.1 M TRIS-HCL PH 8.5, 30%(W/V) PEG 4000, AND 10 MM OF REMARK 280 THE TAIVVQ PEPTIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 4.66000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 10.64500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 6.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 10.64500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 4.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 6.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 6G9G B 1 6 UNP P28307 CSGA_ECOLI 129 134 SEQRES 1 B 6 THR ALA SER ASN SER SER FORMUL 2 HOH *(H2 O) CRYST1 9.320 12.550 21.290 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.107296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.079681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.046970 0.00000 ATOM 1 N THR B 1 2.325 1.455 -9.383 1.00 9.20 N ATOM 2 CA THR B 1 1.335 1.614 -8.296 1.00 9.21 C ATOM 3 C THR B 1 2.012 2.345 -7.148 1.00 8.69 C ATOM 4 O THR B 1 3.168 2.728 -7.261 1.00 9.26 O ATOM 5 CB THR B 1 0.827 0.242 -7.849 1.00 9.19 C ATOM 6 OG1 THR B 1 1.926 -0.530 -7.398 1.00 9.24 O ATOM 7 CG2 THR B 1 0.161 -0.480 -8.996 1.00 9.47 C ATOM 8 N ALA B 2 1.300 2.558 -6.064 1.00 8.28 N ATOM 9 CA ALA B 2 1.886 3.218 -4.913 1.00 8.25 C ATOM 10 C ALA B 2 1.146 2.819 -3.682 1.00 8.37 C ATOM 11 O ALA B 2 -0.035 2.528 -3.728 1.00 8.04 O ATOM 12 CB ALA B 2 1.826 4.718 -5.087 1.00 8.48 C ATOM 13 N SER B 3 1.854 2.790 -2.569 1.00 8.22 N ATOM 14 CA SER B 3 1.229 2.435 -1.324 1.00 8.44 C ATOM 15 C SER B 3 1.995 3.019 -0.174 1.00 8.07 C ATOM 16 O SER B 3 3.161 3.367 -0.292 1.00 7.90 O ATOM 17 CB SER B 3 1.122 0.910 -1.203 1.00 8.87 C ATOM 18 OG SER B 3 2.378 0.279 -1.003 1.00 9.16 O ATOM 19 N ASN B 4 1.304 3.155 0.939 1.00 8.27 N ATOM 20 CA ASN B 4 1.945 3.559 2.143 1.00 8.59 C ATOM 21 C ASN B 4 1.190 3.059 3.352 1.00 8.90 C ATOM 22 O ASN B 4 0.082 2.526 3.250 1.00 8.74 O ATOM 23 CB ASN B 4 2.150 5.089 2.179 1.00 9.09 C ATOM 24 CG ASN B 4 0.852 5.881 2.086 1.00 9.48 C ATOM 25 OD1 ASN B 4 -0.220 5.397 2.451 1.00 10.42 O ATOM 26 ND2 ASN B 4 0.946 7.113 1.593 1.00 9.56 N ATOM 27 N SER B 5 1.833 3.225 4.481 1.00 9.20 N ATOM 28 CA SER B 5 1.222 2.915 5.727 1.00 9.94 C ATOM 29 C SER B 5 1.892 3.723 6.793 1.00 10.25 C ATOM 30 O SER B 5 3.047 4.147 6.645 1.00 9.63 O ATOM 31 CB SER B 5 1.351 1.435 6.021 1.00 10.82 C ATOM 32 OG SER B 5 2.684 1.006 5.936 1.00 12.04 O ATOM 33 N SER B 6 1.171 3.907 7.881 1.00 10.73 N ATOM 34 CA SER B 6 1.684 4.604 9.051 1.00 11.98 C ATOM 35 C SER B 6 0.986 4.048 10.301 1.00 13.14 C ATOM 36 O SER B 6 0.062 3.213 10.148 1.00 14.49 O ATOM 37 CB SER B 6 1.392 6.093 8.902 1.00 12.04 C ATOM 38 OG SER B 6 0.013 6.316 8.730 1.00 11.79 O ATOM 39 OXT SER B 6 1.286 4.477 11.436 1.00 13.00 O TER 40 SER B 6 HETATM 41 O HOH B 101 -0.695 4.470 13.062 1.00 20.74 O MASTER 196 0 0 0 0 0 0 6 40 1 0 1 END