0.027241
0.000000
0.000000
0.000000
0.022829
0.000000
0.000000
0.000000
0.012988
0.000000
0.000000
0.000000
Dalle Vedove, A.
Lolli, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
36.710
43.804
76.996
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C10 H10 O4
194.184
3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID
FERULIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
C
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
S
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
R
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
N
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
N
94
N
sing
Y
95
N
sing
N
96
N
sing
Y
97
N
doub
N
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
E
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
UK
Febs J.
1742-464X
287
1850
1864
10.1111/febs.15111
31661600
Biochemical and cellular mechanism of protein kinase CK2 inhibition by deceptive curcumin.
2020
0000-0002-5155-4682
0000-0002-8536-5599
10.2210/pdb6hov/pdb
pdb_00006hov
100
1
PIXEL
2017-11-16
DECTRIS PILATUS 2M
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
5.2R
ELETTRA
1.00
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
15099.380
Bromodomain-containing protein 4
bromodomain (residues 44-168)
First two residues SM derive from the expression tag
1
man
polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
194.184
3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID
1
syn
non-polymer
18.015
water
165
nat
water
Protein HUNK1
no
no
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN
AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN
AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
127
BRD4, HUNK1
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.05
40.00
0.360
VAPOR DIFFUSION, SITTING DROP
7.5
16% PEG 3350, 20% ethylene glycol
277
citation
citation_author
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Database references
Data collection
Database references
Refinement description
1
0
2019-10-09
1
1
2019-11-13
1
2
2020-05-13
1
3
2024-01-24
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_citation.year
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
6HOQ contains the same ligand bound to a different protein
N
PDBE
Y
PDBE
2018-09-18
REL
REL
EDO
1,2-ETHANEDIOL
FER
3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID
HOH
water
4IOO
PDB
experimental model
EDO
201
2
EDO
EDO
201
A
EDO
301
2
EDO
EDO
202
A
FER
1
3
FER
FER
203
A
HOH
82
4
HOH
HOH
301
A
HOH
48
4
HOH
HOH
302
A
HOH
154
4
HOH
HOH
303
A
HOH
76
4
HOH
HOH
304
A
HOH
119
4
HOH
HOH
305
A
HOH
121
4
HOH
HOH
306
A
HOH
60
4
HOH
HOH
307
A
HOH
94
4
HOH
HOH
308
A
HOH
72
4
HOH
HOH
309
A
HOH
73
4
HOH
HOH
310
A
HOH
85
4
HOH
HOH
311
A
HOH
30
4
HOH
HOH
312
A
HOH
137
4
HOH
HOH
313
A
HOH
18
4
HOH
HOH
314
A
HOH
17
4
HOH
HOH
315
A
HOH
99
4
HOH
HOH
316
A
HOH
139
4
HOH
HOH
317
A
HOH
51
4
HOH
HOH
318
A
HOH
129
4
HOH
HOH
319
A
HOH
26
4
HOH
HOH
320
A
HOH
80
4
HOH
HOH
321
A
HOH
41
4
HOH
HOH
322
A
HOH
23
4
HOH
HOH
323
A
HOH
109
4
HOH
HOH
324
A
HOH
11
4
HOH
HOH
325
A
HOH
42
4
HOH
HOH
326
A
HOH
92
4
HOH
HOH
327
A
HOH
95
4
HOH
HOH
328
A
HOH
43
4
HOH
HOH
329
A
HOH
160
4
HOH
HOH
330
A
HOH
57
4
HOH
HOH
331
A
HOH
103
4
HOH
HOH
332
A
HOH
10
4
HOH
HOH
333
A
HOH
8
4
HOH
HOH
334
A
HOH
39
4
HOH
HOH
335
A
HOH
84
4
HOH
HOH
336
A
HOH
138
4
HOH
HOH
337
A
HOH
105
4
HOH
HOH
338
A
HOH
31
4
HOH
HOH
339
A
HOH
65
4
HOH
HOH
340
A
HOH
56
4
HOH
HOH
341
A
HOH
52
4
HOH
HOH
342
A
HOH
64
4
HOH
HOH
343
A
HOH
7
4
HOH
HOH
344
A
HOH
70
4
HOH
HOH
345
A
HOH
87
4
HOH
HOH
346
A
HOH
98
4
HOH
HOH
347
A
HOH
19
4
HOH
HOH
348
A
HOH
46
4
HOH
HOH
349
A
HOH
9
4
HOH
HOH
350
A
HOH
28
4
HOH
HOH
351
A
HOH
66
4
HOH
HOH
352
A
HOH
6
4
HOH
HOH
353
A
HOH
40
4
HOH
HOH
354
A
HOH
77
4
HOH
HOH
355
A
HOH
164
4
HOH
HOH
356
A
HOH
21
4
HOH
HOH
357
A
HOH
5
4
HOH
HOH
358
A
HOH
141
4
HOH
HOH
359
A
HOH
47
4
HOH
HOH
360
A
HOH
68
4
HOH
HOH
361
A
HOH
22
4
HOH
HOH
362
A
HOH
136
4
HOH
HOH
363
A
HOH
67
4
HOH
HOH
364
A
HOH
81
4
HOH
HOH
365
A
HOH
1
4
HOH
HOH
366
A
HOH
155
4
HOH
HOH
367
A
HOH
125
4
HOH
HOH
368
A
HOH
108
4
HOH
HOH
369
A
HOH
123
4
HOH
HOH
370
A
HOH
24
4
HOH
HOH
371
A
HOH
79
4
HOH
HOH
372
A
HOH
20
4
HOH
HOH
373
A
HOH
25
4
HOH
HOH
374
A
HOH
50
4
HOH
HOH
375
A
HOH
38
4
HOH
HOH
376
A
HOH
49
4
HOH
HOH
377
A
HOH
71
4
HOH
HOH
378
A
HOH
45
4
HOH
HOH
379
A
HOH
101
4
HOH
HOH
380
A
HOH
62
4
HOH
HOH
381
A
HOH
36
4
HOH
HOH
382
A
HOH
29
4
HOH
HOH
383
A
HOH
4
4
HOH
HOH
384
A
HOH
112
4
HOH
HOH
385
A
HOH
111
4
HOH
HOH
386
A
HOH
35
4
HOH
HOH
387
A
HOH
3
4
HOH
HOH
388
A
HOH
69
4
HOH
HOH
389
A
HOH
27
4
HOH
HOH
390
A
HOH
58
4
HOH
HOH
391
A
HOH
93
4
HOH
HOH
392
A
HOH
13
4
HOH
HOH
393
A
HOH
124
4
HOH
HOH
394
A
HOH
32
4
HOH
HOH
395
A
HOH
128
4
HOH
HOH
396
A
HOH
2
4
HOH
HOH
397
A
HOH
61
4
HOH
HOH
398
A
HOH
134
4
HOH
HOH
399
A
HOH
78
4
HOH
HOH
400
A
HOH
44
4
HOH
HOH
401
A
HOH
149
4
HOH
HOH
402
A
HOH
100
4
HOH
HOH
403
A
HOH
117
4
HOH
HOH
404
A
HOH
55
4
HOH
HOH
405
A
HOH
83
4
HOH
HOH
406
A
HOH
37
4
HOH
HOH
407
A
HOH
16
4
HOH
HOH
408
A
HOH
142
4
HOH
HOH
409
A
HOH
15
4
HOH
HOH
410
A
HOH
75
4
HOH
HOH
411
A
HOH
74
4
HOH
HOH
412
A
HOH
97
4
HOH
HOH
413
A
HOH
148
4
HOH
HOH
414
A
HOH
110
4
HOH
HOH
415
A
HOH
131
4
HOH
HOH
416
A
HOH
158
4
HOH
HOH
417
A
HOH
152
4
HOH
HOH
418
A
HOH
156
4
HOH
HOH
419
A
HOH
157
4
HOH
HOH
420
A
HOH
34
4
HOH
HOH
421
A
HOH
126
4
HOH
HOH
422
A
HOH
88
4
HOH
HOH
423
A
HOH
14
4
HOH
HOH
424
A
HOH
89
4
HOH
HOH
425
A
HOH
33
4
HOH
HOH
426
A
HOH
63
4
HOH
HOH
427
A
HOH
90
4
HOH
HOH
428
A
HOH
102
4
HOH
HOH
429
A
HOH
146
4
HOH
HOH
430
A
HOH
53
4
HOH
HOH
431
A
HOH
143
4
HOH
HOH
432
A
HOH
159
4
HOH
HOH
433
A
HOH
91
4
HOH
HOH
434
A
HOH
12
4
HOH
HOH
435
A
HOH
122
4
HOH
HOH
436
A
HOH
107
4
HOH
HOH
437
A
HOH
147
4
HOH
HOH
438
A
HOH
135
4
HOH
HOH
439
A
HOH
118
4
HOH
HOH
440
A
HOH
161
4
HOH
HOH
441
A
HOH
120
4
HOH
HOH
442
A
HOH
86
4
HOH
HOH
443
A
HOH
150
4
HOH
HOH
444
A
HOH
144
4
HOH
HOH
445
A
HOH
133
4
HOH
HOH
446
A
HOH
162
4
HOH
HOH
447
A
HOH
114
4
HOH
HOH
448
A
HOH
59
4
HOH
HOH
449
A
HOH
106
4
HOH
HOH
450
A
HOH
54
4
HOH
HOH
451
A
HOH
165
4
HOH
HOH
452
A
HOH
163
4
HOH
HOH
453
A
HOH
96
4
HOH
HOH
454
A
HOH
151
4
HOH
HOH
455
A
HOH
166
4
HOH
HOH
456
A
HOH
130
4
HOH
HOH
457
A
HOH
132
4
HOH
HOH
458
A
HOH
145
4
HOH
HOH
459
A
HOH
116
4
HOH
HOH
460
A
HOH
115
4
HOH
HOH
461
A
HOH
113
4
HOH
HOH
462
A
HOH
127
4
HOH
HOH
463
A
HOH
104
4
HOH
HOH
464
A
HOH
140
4
HOH
HOH
465
A
SER
42
n
1
SER
42
A
MET
43
n
2
MET
43
A
ASN
44
n
3
ASN
44
A
PRO
45
n
4
PRO
45
A
PRO
46
n
5
PRO
46
A
PRO
47
n
6
PRO
47
A
PRO
48
n
7
PRO
48
A
GLU
49
n
8
GLU
49
A
THR
50
n
9
THR
50
A
SER
51
n
10
SER
51
A
ASN
52
n
11
ASN
52
A
PRO
53
n
12
PRO
53
A
ASN
54
n
13
ASN
54
A
LYS
55
n
14
LYS
55
A
PRO
56
n
15
PRO
56
A
LYS
57
n
16
LYS
57
A
ARG
58
n
17
ARG
58
A
GLN
59
n
18
GLN
59
A
THR
60
n
19
THR
60
A
ASN
61
n
20
ASN
61
A
GLN
62
n
21
GLN
62
A
LEU
63
n
22
LEU
63
A
GLN
64
n
23
GLN
64
A
TYR
65
n
24
TYR
65
A
LEU
66
n
25
LEU
66
A
LEU
67
n
26
LEU
67
A
ARG
68
n
27
ARG
68
A
VAL
69
n
28
VAL
69
A
VAL
70
n
29
VAL
70
A
LEU
71
n
30
LEU
71
A
LYS
72
n
31
LYS
72
A
THR
73
n
32
THR
73
A
LEU
74
n
33
LEU
74
A
TRP
75
n
34
TRP
75
A
LYS
76
n
35
LYS
76
A
HIS
77
n
36
HIS
77
A
GLN
78
n
37
GLN
78
A
PHE
79
n
38
PHE
79
A
ALA
80
n
39
ALA
80
A
TRP
81
n
40
TRP
81
A
PRO
82
n
41
PRO
82
A
PHE
83
n
42
PHE
83
A
GLN
84
n
43
GLN
84
A
GLN
85
n
44
GLN
85
A
PRO
86
n
45
PRO
86
A
VAL
87
n
46
VAL
87
A
ASP
88
n
47
ASP
88
A
ALA
89
n
48
ALA
89
A
VAL
90
n
49
VAL
90
A
LYS
91
n
50
LYS
91
A
LEU
92
n
51
LEU
92
A
ASN
93
n
52
ASN
93
A
LEU
94
n
53
LEU
94
A
PRO
95
n
54
PRO
95
A
ASP
96
n
55
ASP
96
A
TYR
97
n
56
TYR
97
A
TYR
98
n
57
TYR
98
A
LYS
99
n
58
LYS
99
A
ILE
100
n
59
ILE
100
A
ILE
101
n
60
ILE
101
A
LYS
102
n
61
LYS
102
A
THR
103
n
62
THR
103
A
PRO
104
n
63
PRO
104
A
MET
105
n
64
MET
105
A
ASP
106
n
65
ASP
106
A
MET
107
n
66
MET
107
A
GLY
108
n
67
GLY
108
A
THR
109
n
68
THR
109
A
ILE
110
n
69
ILE
110
A
LYS
111
n
70
LYS
111
A
LYS
112
n
71
LYS
112
A
ARG
113
n
72
ARG
113
A
LEU
114
n
73
LEU
114
A
GLU
115
n
74
GLU
115
A
ASN
116
n
75
ASN
116
A
ASN
117
n
76
ASN
117
A
TYR
118
n
77
TYR
118
A
TYR
119
n
78
TYR
119
A
TRP
120
n
79
TRP
120
A
ASN
121
n
80
ASN
121
A
ALA
122
n
81
ALA
122
A
GLN
123
n
82
GLN
123
A
GLU
124
n
83
GLU
124
A
CYS
125
n
84
CYS
125
A
ILE
126
n
85
ILE
126
A
GLN
127
n
86
GLN
127
A
ASP
128
n
87
ASP
128
A
PHE
129
n
88
PHE
129
A
ASN
130
n
89
ASN
130
A
THR
131
n
90
THR
131
A
MET
132
n
91
MET
132
A
PHE
133
n
92
PHE
133
A
THR
134
n
93
THR
134
A
ASN
135
n
94
ASN
135
A
CYS
136
n
95
CYS
136
A
TYR
137
n
96
TYR
137
A
ILE
138
n
97
ILE
138
A
TYR
139
n
98
TYR
139
A
ASN
140
n
99
ASN
140
A
LYS
141
n
100
LYS
141
A
PRO
142
n
101
PRO
142
A
GLY
143
n
102
GLY
143
A
ASP
144
n
103
ASP
144
A
ASP
145
n
104
ASP
145
A
ILE
146
n
105
ILE
146
A
VAL
147
n
106
VAL
147
A
LEU
148
n
107
LEU
148
A
MET
149
n
108
MET
149
A
ALA
150
n
109
ALA
150
A
GLU
151
n
110
GLU
151
A
ALA
152
n
111
ALA
152
A
LEU
153
n
112
LEU
153
A
GLU
154
n
113
GLU
154
A
LYS
155
n
114
LYS
155
A
LEU
156
n
115
LEU
156
A
PHE
157
n
116
PHE
157
A
LEU
158
n
117
LEU
158
A
GLN
159
n
118
GLN
159
A
LYS
160
n
119
LYS
160
A
ILE
161
n
120
ILE
161
A
ASN
162
n
121
ASN
162
A
GLU
163
n
122
GLU
163
A
LEU
164
n
123
LEU
164
A
PRO
165
n
124
PRO
165
A
THR
166
n
125
THR
166
A
GLU
167
n
126
GLU
167
A
n
127
168
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
880
9
7320
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLU
168
A
GLU
127
1
Y
1
A
VAL
69
-105.08
-60.90
63.710
22.1224
9.710
0.2160
0.1874
0.1889
1.8500
28.9170
540
11031
4.9000
99.3400
0.2600
1
FREE R-VALUE
1.340
MOLECULAR REPLACEMENT
24.0300
0.9000
1.1100
4IOO
1.8500
28.9170
165
1239
30.32
31.40
22
0
1052
126
0.007
1132
0.887
1537
0.045
162
0.006
198
4.162
1252
0.3196
0.0000
0.2351
2.0362
136
2548
2684
4
99.0000
0.2305
0.0000
0.1880
2.3307
135
2567
2702
4
100.0000
0.2355
0.0000
0.1992
2.9360
124
2636
2760
4
100.0000
0.1871
0.0000
0.1713
28.9207
145
2740
2885
4
99.0000
1.850
43.800
6HOV
11081
0.996
0.129
0.052
0.139
1
10.000
6.800
99.700
0.958
1.850
1.890
659
0.918
0.380
1.032
1
7.100
99.600
0.074
9.060
43.800
123
0.995
0.029
0.079
1
6.000
98.300
refinement
PHENIX
data reduction
Wolfgang Kabsch
Wolfgang.Kabsch@mpimf-heidelberg.mpg.de
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/
XDS
package
data scaling
Phil Evans
29/03/17
http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
Aimless
program
0.5.32
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
data extraction
PDB
deposit@deposit.rcsb.org
Sep. 1, 2017
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.24
N
Crystal Structure of BRD4 first bromodomain in complex with ferulic acid
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
THR
60
A
THR
19
HELX_P
A
VAL
69
A
VAL
28
1
AA1
10
A
VAL
69
A
VAL
28
HELX_P
A
LYS
76
A
LYS
35
1
AA2
8
A
ALA
80
A
ALA
39
HELX_P
A
GLN
84
A
GLN
43
5
AA3
5
A
ASP
96
A
ASP
55
HELX_P
A
ILE
101
A
ILE
60
1
AA4
6
A
ASP
106
A
ASP
65
HELX_P
A
ASN
116
A
ASN
75
1
AA5
11
A
ASN
121
A
ASN
80
HELX_P
A
ASN
140
A
ASN
99
1
AA6
20
A
ASP
144
A
ASP
103
HELX_P
A
ASN
162
A
ASN
121
1
AA7
19
TRANSCRIPTION
four helical bundle, transcription
BRD4_HUMAN
UNP
1
44
O60885
O60885-3
NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ
ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
44
168
6HOV
44
168
O60885
A
1
3
127
1
expression tag
SER
42
6HOV
A
O60885
UNP
1
1
expression tag
MET
43
6HOV
A
O60885
UNP
2
binding site for residue EDO A 201
A
EDO
201
Software
5
binding site for residue EDO A 202
A
EDO
202
Software
2
binding site for residue FER A 203
A
FER
203
Software
10
A
ILE
100
A
ILE
59
5
1_555
A
ILE
101
A
ILE
60
5
1_555
A
LYS
102
A
LYS
61
5
1_555
A
THR
103
A
THR
62
5
1_555
A
ASN
135
A
ASN
94
5
1_555
A
TYR
137
A
TYR
96
2
4_445
A
LYS
160
A
LYS
119
2
1_555
A
TRP
81
A
TRP
40
10
1_555
A
PRO
82
A
PRO
41
10
1_555
A
VAL
87
A
VAL
46
10
1_555
A
LEU
92
A
LEU
51
10
1_555
A
ASP
96
A
ASP
55
10
4_455
A
ASN
140
A
ASN
99
10
1_555
A
HOH
314
E
HOH
10
1_555
A
HOH
342
E
HOH
10
4_455
A
HOH
344
E
HOH
10
1_555
A
HOH
394
E
HOH
10
1_555
19
P 21 21 21