0.016501
0.000000
0.000000
-0.000000
0.009852
0.000000
0.000000
-0.000000
0.021416
0.00000
0.00000
0.00000
0000-0002-2158-7459
Naretto, A.
Fanuel, M.
0000-0003-4767-6940
Ropartz, D.
0000-0001-6083-2034
Rogniaux, H.
Larocque, R.
0000-0002-7483-2841
Czjzek, M.
Tellier, C.
0000-0002-3009-6205
Michel, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
60.604
101.498
46.693
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
294
6923
6939
10.1074/jbc.RA118.006609
30846563
The agar-specific hydrolaseZgAgaC from the marine bacteriumZobellia galactanivoransdefines a new GH16 protein subfamily.
2019
100
1
N
PIXEL
2016-12-03
DECTRIS PILATUS3 S 6M
SINGLE WAVELENGTH
M
x-ray
1
0.97
1.0
ID29
ESRF
0.97
SYNCHROTRON
ESRF BEAMLINE ID29
31391.588
Beta-agarase C
3.2.1.81
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
285
nat
water
no
no
MGSSHHHHHHGSTYDFTGNTPPPAPQGMKWVKISQLSDEFNNGFNTDKWTKSLWNYGVPVQMKAENSGVSDGKLWIKATL
GNDPERWFETSRVMSKAQVNYPMYTVSRIKGAHISAYNTFWLNNGNISNRNEIDVIENNSNPSCNCQPDFPWQMNSQYFH
VVNDDTKRNKGNFDNRELSDANPLKGVAWNEEYHTFGVWWKDATHIQFYLDGEPAGSVVSARDFTRELNIIWDLWTVDAD
WLGGLAKKEHLSNNNINTMKIDWIHTYQLVEE
MGSSHHHHHHGSTYDFTGNTPPPAPQGMKWVKISQLSDEFNNGFNTDKWTKSLWNYGVPVQMKAENSGVSDGKLWIKATL
GNDPERWFETSRVMSKAQVNYPMYTVSRIKGAHISAYNTFWLNNGNISNRNEIDVIENNSNPSCNCQPDFPWQMNSQYFH
VVNDDTKRNKGNFDNRELSDANPLKGVAWNEEYHTFGVWWKDATHIQFYLDGEPAGSVVSARDFTRELNIIWDLWTVDAD
WLGGLAKKEHLSNNNINTMKIDWIHTYQLVEE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
272
agaC, zobellia_4267
63186
Zobellia galactanivorans
562
Escherichia coli
Biological sequence
1
2.29
46.23
VAPOR DIFFUSION, HANGING DROP
2.1 M sodium malonate and 1% glycerol
293
citation
citation_author
pdbx_database_proc
citation
citation_author
pdbx_database_proc
repository
Initial release
Data collection
Database references
Data collection
Database references
1
0
2019-03-13
1
1
2019-03-20
1
2
2019-05-08
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation_author.identifier_ORCID
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation_author.identifier_ORCID
N
PDBE
Y
PDBE
2018-10-19
REL
REL
1
A
O
HOH
785
6.83
MG
MAGNESIUM ION
GOL
GLYCEROL
EDO
1,2-ETHANEDIOL
HOH
water
MG
1
2
MG
MG
401
A
GOL
1
3
GOL
GOL
402
A
GOL
2
3
GOL
GOL
403
A
EDO
1
4
EDO
EDO
404
A
EDO
2
4
EDO
EDO
405
A
HOH
136
5
HOH
HOH
501
A
HOH
294
5
HOH
HOH
502
A
HOH
262
5
HOH
HOH
503
A
HOH
190
5
HOH
HOH
504
A
HOH
287
5
HOH
HOH
505
A
HOH
254
5
HOH
HOH
506
A
HOH
314
5
HOH
HOH
507
A
HOH
143
5
HOH
HOH
508
A
HOH
184
5
HOH
HOH
509
A
HOH
318
5
HOH
HOH
510
A
HOH
216
5
HOH
HOH
511
A
HOH
157
5
HOH
HOH
512
A
HOH
48
5
HOH
HOH
513
A
HOH
113
5
HOH
HOH
514
A
HOH
221
5
HOH
HOH
515
A
HOH
63
5
HOH
HOH
516
A
HOH
195
5
HOH
HOH
517
A
HOH
189
5
HOH
HOH
518
A
HOH
174
5
HOH
HOH
519
A
HOH
98
5
HOH
HOH
520
A
HOH
169
5
HOH
HOH
521
A
HOH
81
5
HOH
HOH
522
A
HOH
78
5
HOH
HOH
523
A
HOH
160
5
HOH
HOH
524
A
HOH
10
5
HOH
HOH
525
A
HOH
41
5
HOH
HOH
526
A
HOH
199
5
HOH
HOH
527
A
HOH
82
5
HOH
HOH
528
A
HOH
320
5
HOH
HOH
529
A
HOH
227
5
HOH
HOH
530
A
HOH
156
5
HOH
HOH
531
A
HOH
167
5
HOH
HOH
532
A
HOH
282
5
HOH
HOH
533
A
HOH
234
5
HOH
HOH
534
A
HOH
140
5
HOH
HOH
535
A
HOH
29
5
HOH
HOH
536
A
HOH
27
5
HOH
HOH
537
A
HOH
99
5
HOH
HOH
538
A
HOH
206
5
HOH
HOH
539
A
HOH
233
5
HOH
HOH
540
A
HOH
77
5
HOH
HOH
541
A
HOH
213
5
HOH
HOH
542
A
HOH
68
5
HOH
HOH
543
A
HOH
158
5
HOH
HOH
544
A
HOH
6
5
HOH
HOH
545
A
HOH
87
5
HOH
HOH
546
A
HOH
56
5
HOH
HOH
547
A
HOH
94
5
HOH
HOH
548
A
HOH
226
5
HOH
HOH
549
A
HOH
11
5
HOH
HOH
550
A
HOH
121
5
HOH
HOH
551
A
HOH
115
5
HOH
HOH
552
A
HOH
111
5
HOH
HOH
553
A
HOH
242
5
HOH
HOH
554
A
HOH
202
5
HOH
HOH
555
A
HOH
72
5
HOH
HOH
556
A
HOH
47
5
HOH
HOH
557
A
HOH
337
5
HOH
HOH
558
A
HOH
138
5
HOH
HOH
559
A
HOH
207
5
HOH
HOH
560
A
HOH
79
5
HOH
HOH
561
A
HOH
336
5
HOH
HOH
562
A
HOH
239
5
HOH
HOH
563
A
HOH
120
5
HOH
HOH
564
A
HOH
150
5
HOH
HOH
565
A
HOH
33
5
HOH
HOH
566
A
HOH
249
5
HOH
HOH
567
A
HOH
25
5
HOH
HOH
568
A
HOH
151
5
HOH
HOH
569
A
HOH
66
5
HOH
HOH
570
A
HOH
107
5
HOH
HOH
571
A
HOH
39
5
HOH
HOH
572
A
HOH
15
5
HOH
HOH
573
A
HOH
31
5
HOH
HOH
574
A
HOH
332
5
HOH
HOH
575
A
HOH
134
5
HOH
HOH
576
A
HOH
37
5
HOH
HOH
577
A
HOH
14
5
HOH
HOH
578
A
HOH
325
5
HOH
HOH
579
A
HOH
51
5
HOH
HOH
580
A
HOH
18
5
HOH
HOH
581
A
HOH
17
5
HOH
HOH
582
A
HOH
38
5
HOH
HOH
583
A
HOH
70
5
HOH
HOH
584
A
HOH
109
5
HOH
HOH
585
A
HOH
50
5
HOH
HOH
586
A
HOH
5
5
HOH
HOH
587
A
HOH
49
5
HOH
HOH
588
A
HOH
291
5
HOH
HOH
589
A
HOH
59
5
HOH
HOH
590
A
HOH
23
5
HOH
HOH
591
A
HOH
96
5
HOH
HOH
592
A
HOH
255
5
HOH
HOH
593
A
HOH
4
5
HOH
HOH
594
A
HOH
170
5
HOH
HOH
595
A
HOH
127
5
HOH
HOH
596
A
HOH
30
5
HOH
HOH
597
A
HOH
159
5
HOH
HOH
598
A
HOH
3
5
HOH
HOH
599
A
HOH
240
5
HOH
HOH
600
A
HOH
80
5
HOH
HOH
601
A
HOH
95
5
HOH
HOH
602
A
HOH
131
5
HOH
HOH
603
A
HOH
295
5
HOH
HOH
604
A
HOH
133
5
HOH
HOH
605
A
HOH
153
5
HOH
HOH
606
A
HOH
75
5
HOH
HOH
607
A
HOH
203
5
HOH
HOH
608
A
HOH
178
5
HOH
HOH
609
A
HOH
272
5
HOH
HOH
610
A
HOH
46
5
HOH
HOH
611
A
HOH
9
5
HOH
HOH
612
A
HOH
200
5
HOH
HOH
613
A
HOH
108
5
HOH
HOH
614
A
HOH
1
5
HOH
HOH
615
A
HOH
26
5
HOH
HOH
616
A
HOH
12
5
HOH
HOH
617
A
HOH
57
5
HOH
HOH
618
A
HOH
130
5
HOH
HOH
619
A
HOH
135
5
HOH
HOH
620
A
HOH
42
5
HOH
HOH
621
A
HOH
54
5
HOH
HOH
622
A
HOH
310
5
HOH
HOH
623
A
HOH
40
5
HOH
HOH
624
A
HOH
53
5
HOH
HOH
625
A
HOH
247
5
HOH
HOH
626
A
HOH
333
5
HOH
HOH
627
A
HOH
97
5
HOH
HOH
628
A
HOH
124
5
HOH
HOH
629
A
HOH
67
5
HOH
HOH
630
A
HOH
44
5
HOH
HOH
631
A
HOH
341
5
HOH
HOH
632
A
HOH
293
5
HOH
HOH
633
A
HOH
129
5
HOH
HOH
634
A
HOH
65
5
HOH
HOH
635
A
HOH
258
5
HOH
HOH
636
A
HOH
330
5
HOH
HOH
637
A
HOH
161
5
HOH
HOH
638
A
HOH
329
5
HOH
HOH
639
A
HOH
165
5
HOH
HOH
640
A
HOH
338
5
HOH
HOH
641
A
HOH
7
5
HOH
HOH
642
A
HOH
218
5
HOH
HOH
643
A
HOH
16
5
HOH
HOH
644
A
HOH
32
5
HOH
HOH
645
A
HOH
60
5
HOH
HOH
646
A
HOH
20
5
HOH
HOH
647
A
HOH
141
5
HOH
HOH
648
A
HOH
145
5
HOH
HOH
649
A
HOH
217
5
HOH
HOH
650
A
HOH
181
5
HOH
HOH
651
A
HOH
148
5
HOH
HOH
652
A
HOH
137
5
HOH
HOH
653
A
HOH
163
5
HOH
HOH
654
A
HOH
311
5
HOH
HOH
655
A
HOH
193
5
HOH
HOH
656
A
HOH
297
5
HOH
HOH
657
A
HOH
251
5
HOH
HOH
658
A
HOH
35
5
HOH
HOH
659
A
HOH
122
5
HOH
HOH
660
A
HOH
126
5
HOH
HOH
661
A
HOH
183
5
HOH
HOH
662
A
HOH
76
5
HOH
HOH
663
A
HOH
284
5
HOH
HOH
664
A
HOH
83
5
HOH
HOH
665
A
HOH
92
5
HOH
HOH
666
A
HOH
168
5
HOH
HOH
667
A
HOH
290
5
HOH
HOH
668
A
HOH
298
5
HOH
HOH
669
A
HOH
220
5
HOH
HOH
670
A
HOH
231
5
HOH
HOH
671
A
HOH
89
5
HOH
HOH
672
A
HOH
139
5
HOH
HOH
673
A
HOH
24
5
HOH
HOH
674
A
HOH
146
5
HOH
HOH
675
A
HOH
104
5
HOH
HOH
676
A
HOH
58
5
HOH
HOH
677
A
HOH
88
5
HOH
HOH
678
A
HOH
252
5
HOH
HOH
679
A
HOH
155
5
HOH
HOH
680
A
HOH
93
5
HOH
HOH
681
A
HOH
71
5
HOH
HOH
682
A
HOH
13
5
HOH
HOH
683
A
HOH
335
5
HOH
HOH
684
A
HOH
162
5
HOH
HOH
685
A
HOH
105
5
HOH
HOH
686
A
HOH
253
5
HOH
HOH
687
A
HOH
228
5
HOH
HOH
688
A
HOH
201
5
HOH
HOH
689
A
HOH
61
5
HOH
HOH
690
A
HOH
84
5
HOH
HOH
691
A
HOH
166
5
HOH
HOH
692
A
HOH
64
5
HOH
HOH
693
A
HOH
128
5
HOH
HOH
694
A
HOH
205
5
HOH
HOH
695
A
HOH
36
5
HOH
HOH
696
A
HOH
215
5
HOH
HOH
697
A
HOH
116
5
HOH
HOH
698
A
HOH
2
5
HOH
HOH
699
A
HOH
102
5
HOH
HOH
700
A
HOH
45
5
HOH
HOH
701
A
HOH
34
5
HOH
HOH
702
A
HOH
69
5
HOH
HOH
703
A
HOH
229
5
HOH
HOH
704
A
HOH
62
5
HOH
HOH
705
A
HOH
212
5
HOH
HOH
706
A
HOH
260
5
HOH
HOH
707
A
HOH
236
5
HOH
HOH
708
A
HOH
256
5
HOH
HOH
709
A
HOH
327
5
HOH
HOH
710
A
HOH
52
5
HOH
HOH
711
A
HOH
172
5
HOH
HOH
712
A
HOH
123
5
HOH
HOH
713
A
HOH
173
5
HOH
HOH
714
A
HOH
209
5
HOH
HOH
715
A
HOH
100
5
HOH
HOH
716
A
HOH
132
5
HOH
HOH
717
A
HOH
192
5
HOH
HOH
718
A
HOH
232
5
HOH
HOH
719
A
HOH
154
5
HOH
HOH
720
A
HOH
243
5
HOH
HOH
721
A
HOH
196
5
HOH
HOH
722
A
HOH
250
5
HOH
HOH
723
A
HOH
110
5
HOH
HOH
724
A
HOH
125
5
HOH
HOH
725
A
HOH
43
5
HOH
HOH
726
A
HOH
246
5
HOH
HOH
727
A
HOH
8
5
HOH
HOH
728
A
HOH
275
5
HOH
HOH
729
A
HOH
197
5
HOH
HOH
730
A
HOH
222
5
HOH
HOH
731
A
HOH
142
5
HOH
HOH
732
A
HOH
304
5
HOH
HOH
733
A
HOH
317
5
HOH
HOH
734
A
HOH
241
5
HOH
HOH
735
A
HOH
204
5
HOH
HOH
736
A
HOH
119
5
HOH
HOH
737
A
HOH
292
5
HOH
HOH
738
A
HOH
223
5
HOH
HOH
739
A
HOH
267
5
HOH
HOH
740
A
HOH
259
5
HOH
HOH
741
A
HOH
152
5
HOH
HOH
742
A
HOH
339
5
HOH
HOH
743
A
HOH
112
5
HOH
HOH
744
A
HOH
278
5
HOH
HOH
745
A
HOH
334
5
HOH
HOH
746
A
HOH
225
5
HOH
HOH
747
A
HOH
171
5
HOH
HOH
748
A
HOH
274
5
HOH
HOH
749
A
HOH
182
5
HOH
HOH
750
A
HOH
343
5
HOH
HOH
751
A
HOH
331
5
HOH
HOH
752
A
HOH
280
5
HOH
HOH
753
A
HOH
283
5
HOH
HOH
754
A
HOH
90
5
HOH
HOH
755
A
HOH
198
5
HOH
HOH
756
A
HOH
180
5
HOH
HOH
757
A
HOH
179
5
HOH
HOH
758
A
HOH
235
5
HOH
HOH
759
A
HOH
230
5
HOH
HOH
760
A
HOH
185
5
HOH
HOH
761
A
HOH
187
5
HOH
HOH
762
A
HOH
244
5
HOH
HOH
763
A
HOH
342
5
HOH
HOH
764
A
HOH
307
5
HOH
HOH
765
A
HOH
308
5
HOH
HOH
766
A
HOH
175
5
HOH
HOH
767
A
HOH
279
5
HOH
HOH
768
A
HOH
323
5
HOH
HOH
769
A
HOH
277
5
HOH
HOH
770
A
HOH
328
5
HOH
HOH
771
A
HOH
270
5
HOH
HOH
772
A
HOH
340
5
HOH
HOH
773
A
HOH
208
5
HOH
HOH
774
A
HOH
177
5
HOH
HOH
775
A
HOH
257
5
HOH
HOH
776
A
HOH
147
5
HOH
HOH
777
A
HOH
219
5
HOH
HOH
778
A
HOH
188
5
HOH
HOH
779
A
HOH
224
5
HOH
HOH
780
A
HOH
263
5
HOH
HOH
781
A
HOH
191
5
HOH
HOH
782
A
HOH
306
5
HOH
HOH
783
A
HOH
276
5
HOH
HOH
784
A
HOH
265
5
HOH
HOH
785
A
n
1
57
A
n
2
58
A
n
3
59
A
SER
60
n
4
SER
60
A
HIS
61
n
5
HIS
61
A
HIS
62
n
6
HIS
62
A
HIS
63
n
7
HIS
63
A
HIS
64
n
8
HIS
64
A
HIS
65
n
9
HIS
65
A
HIS
66
n
10
HIS
66
A
GLY
67
n
11
GLY
67
A
SER
68
n
12
SER
68
A
THR
69
n
13
THR
69
A
TYR
70
n
14
TYR
70
A
ASP
71
n
15
ASP
71
A
PHE
72
n
16
PHE
72
A
THR
73
n
17
THR
73
A
GLY
74
n
18
GLY
74
A
ASN
75
n
19
ASN
75
A
THR
76
n
20
THR
76
A
PRO
77
n
21
PRO
77
A
PRO
78
n
22
PRO
78
A
PRO
79
n
23
PRO
79
A
ALA
80
n
24
ALA
80
A
PRO
81
n
25
PRO
81
A
GLN
82
n
26
GLN
82
A
GLY
83
n
27
GLY
83
A
MET
84
n
28
MET
84
A
LYS
85
n
29
LYS
85
A
TRP
86
n
30
TRP
86
A
VAL
87
n
31
VAL
87
A
LYS
88
n
32
LYS
88
A
ILE
89
n
33
ILE
89
A
SER
90
n
34
SER
90
A
GLN
91
n
35
GLN
91
A
LEU
92
n
36
LEU
92
A
SER
93
n
37
SER
93
A
ASP
94
n
38
ASP
94
A
GLU
95
n
39
GLU
95
A
PHE
96
n
40
PHE
96
A
ASN
97
n
41
ASN
97
A
ASN
98
n
42
ASN
98
A
GLY
99
n
43
GLY
99
A
PHE
100
n
44
PHE
100
A
ASN
101
n
45
ASN
101
A
THR
102
n
46
THR
102
A
ASP
103
n
47
ASP
103
A
LYS
104
n
48
LYS
104
A
TRP
105
n
49
TRP
105
A
THR
106
n
50
THR
106
A
LYS
107
n
51
LYS
107
A
SER
108
n
52
SER
108
A
LEU
109
n
53
LEU
109
A
TRP
110
n
54
TRP
110
A
ASN
111
n
55
ASN
111
A
TYR
112
n
56
TYR
112
A
GLY
113
n
57
GLY
113
A
VAL
114
n
58
VAL
114
A
PRO
115
n
59
PRO
115
A
VAL
116
n
60
VAL
116
A
GLN
117
n
61
GLN
117
A
MET
118
n
62
MET
118
A
LYS
119
n
63
LYS
119
A
ALA
120
n
64
ALA
120
A
GLU
121
n
65
GLU
121
A
ASN
122
n
66
ASN
122
A
SER
123
n
67
SER
123
A
GLY
124
n
68
GLY
124
A
VAL
125
n
69
VAL
125
A
SER
126
n
70
SER
126
A
ASP
127
n
71
ASP
127
A
GLY
128
n
72
GLY
128
A
LYS
129
n
73
LYS
129
A
LEU
130
n
74
LEU
130
A
TRP
131
n
75
TRP
131
A
ILE
132
n
76
ILE
132
A
LYS
133
n
77
LYS
133
A
ALA
134
n
78
ALA
134
A
THR
135
n
79
THR
135
A
LEU
136
n
80
LEU
136
A
GLY
137
n
81
GLY
137
A
ASN
138
n
82
ASN
138
A
ASP
139
n
83
ASP
139
A
PRO
140
n
84
PRO
140
A
GLU
141
n
85
GLU
141
A
ARG
142
n
86
ARG
142
A
TRP
143
n
87
TRP
143
A
PHE
144
n
88
PHE
144
A
GLU
145
n
89
GLU
145
A
THR
146
n
90
THR
146
A
SER
147
n
91
SER
147
A
ARG
148
n
92
ARG
148
A
VAL
149
n
93
VAL
149
A
MET
150
n
94
MET
150
A
SER
151
n
95
SER
151
A
LYS
152
n
96
LYS
152
A
ALA
153
n
97
ALA
153
A
GLN
154
n
98
GLN
154
A
VAL
155
n
99
VAL
155
A
ASN
156
n
100
ASN
156
A
TYR
157
n
101
TYR
157
A
PRO
158
n
102
PRO
158
A
MET
159
n
103
MET
159
A
TYR
160
n
104
TYR
160
A
THR
161
n
105
THR
161
A
VAL
162
n
106
VAL
162
A
SER
163
n
107
SER
163
A
ARG
164
n
108
ARG
164
A
ILE
165
n
109
ILE
165
A
LYS
166
n
110
LYS
166
A
GLY
167
n
111
GLY
167
A
ALA
168
n
112
ALA
168
A
HIS
169
n
113
HIS
169
A
ILE
170
n
114
ILE
170
A
SER
171
n
115
SER
171
A
ALA
172
n
116
ALA
172
A
TYR
173
n
117
TYR
173
A
ASN
174
n
118
ASN
174
A
THR
175
n
119
THR
175
A
PHE
176
n
120
PHE
176
A
TRP
177
n
121
TRP
177
A
LEU
178
n
122
LEU
178
A
ASN
179
n
123
ASN
179
A
ASN
180
n
124
ASN
180
A
GLY
181
n
125
GLY
181
A
ASN
182
n
126
ASN
182
A
ILE
183
n
127
ILE
183
A
SER
184
n
128
SER
184
A
ASN
185
n
129
ASN
185
A
ARG
186
n
130
ARG
186
A
ASN
187
n
131
ASN
187
A
GLU
188
n
132
GLU
188
A
ILE
189
n
133
ILE
189
A
ASP
190
n
134
ASP
190
A
VAL
191
n
135
VAL
191
A
ILE
192
n
136
ILE
192
A
GLU
193
n
137
GLU
193
A
ASN
194
n
138
ASN
194
A
ASN
195
n
139
ASN
195
A
SER
196
n
140
SER
196
A
ASN
197
n
141
ASN
197
A
PRO
198
n
142
PRO
198
A
SER
199
n
143
SER
199
A
CYS
200
n
144
CYS
200
A
ASN
201
n
145
ASN
201
A
CYS
202
n
146
CYS
202
A
GLN
203
n
147
GLN
203
A
PRO
204
n
148
PRO
204
A
ASP
205
n
149
ASP
205
A
PHE
206
n
150
PHE
206
A
PRO
207
n
151
PRO
207
A
TRP
208
n
152
TRP
208
A
GLN
209
n
153
GLN
209
A
MET
210
n
154
MET
210
A
ASN
211
n
155
ASN
211
A
SER
212
n
156
SER
212
A
GLN
213
n
157
GLN
213
A
TYR
214
n
158
TYR
214
A
PHE
215
n
159
PHE
215
A
HIS
216
n
160
HIS
216
A
VAL
217
n
161
VAL
217
A
VAL
218
n
162
VAL
218
A
ASN
219
n
163
ASN
219
A
ASP
220
n
164
ASP
220
A
ASP
221
n
165
ASP
221
A
THR
222
n
166
THR
222
A
LYS
223
n
167
LYS
223
A
ARG
224
n
168
ARG
224
A
ASN
225
n
169
ASN
225
A
LYS
226
n
170
LYS
226
A
GLY
227
n
171
GLY
227
A
ASN
228
n
172
ASN
228
A
PHE
229
n
173
PHE
229
A
ASP
230
n
174
ASP
230
A
ASN
231
n
175
ASN
231
A
ARG
232
n
176
ARG
232
A
GLU
233
n
177
GLU
233
A
LEU
234
n
178
LEU
234
A
SER
235
n
179
SER
235
A
ASP
236
n
180
ASP
236
A
ALA
237
n
181
ALA
237
A
ASN
238
n
182
ASN
238
A
PRO
239
n
183
PRO
239
A
LEU
240
n
184
LEU
240
A
LYS
241
n
185
LYS
241
A
GLY
242
n
186
GLY
242
A
VAL
243
n
187
VAL
243
A
ALA
244
n
188
ALA
244
A
TRP
245
n
189
TRP
245
A
ASN
246
n
190
ASN
246
A
GLU
247
n
191
GLU
247
A
GLU
248
n
192
GLU
248
A
TYR
249
n
193
TYR
249
A
HIS
250
n
194
HIS
250
A
THR
251
n
195
THR
251
A
PHE
252
n
196
PHE
252
A
GLY
253
n
197
GLY
253
A
VAL
254
n
198
VAL
254
A
TRP
255
n
199
TRP
255
A
TRP
256
n
200
TRP
256
A
LYS
257
n
201
LYS
257
A
ASP
258
n
202
ASP
258
A
ALA
259
n
203
ALA
259
A
THR
260
n
204
THR
260
A
HIS
261
n
205
HIS
261
A
ILE
262
n
206
ILE
262
A
GLN
263
n
207
GLN
263
A
PHE
264
n
208
PHE
264
A
TYR
265
n
209
TYR
265
A
LEU
266
n
210
LEU
266
A
ASP
267
n
211
ASP
267
A
GLY
268
n
212
GLY
268
A
GLU
269
n
213
GLU
269
A
PRO
270
n
214
PRO
270
A
ALA
271
n
215
ALA
271
A
GLY
272
n
216
GLY
272
A
SER
273
n
217
SER
273
A
VAL
274
n
218
VAL
274
A
VAL
275
n
219
VAL
275
A
SER
276
n
220
SER
276
A
ALA
277
n
221
ALA
277
A
ARG
278
n
222
ARG
278
A
ASP
279
n
223
ASP
279
A
PHE
280
n
224
PHE
280
A
THR
281
n
225
THR
281
A
ARG
282
n
226
ARG
282
A
GLU
283
n
227
GLU
283
A
LEU
284
n
228
LEU
284
A
ASN
285
n
229
ASN
285
A
ILE
286
n
230
ILE
286
A
ILE
287
n
231
ILE
287
A
TRP
288
n
232
TRP
288
A
ASP
289
n
233
ASP
289
A
LEU
290
n
234
LEU
290
A
TRP
291
n
235
TRP
291
A
THR
292
n
236
THR
292
A
VAL
293
n
237
VAL
293
A
ASP
294
n
238
ASP
294
A
ALA
295
n
239
ALA
295
A
ASP
296
n
240
ASP
296
A
TRP
297
n
241
TRP
297
A
LEU
298
n
242
LEU
298
A
GLY
299
n
243
GLY
299
A
GLY
300
n
244
GLY
300
A
LEU
301
n
245
LEU
301
A
ALA
302
n
246
ALA
302
A
LYS
303
n
247
LYS
303
A
LYS
304
n
248
LYS
304
A
GLU
305
n
249
GLU
305
A
HIS
306
n
250
HIS
306
A
LEU
307
n
251
LEU
307
A
SER
308
n
252
SER
308
A
ASN
309
n
253
ASN
309
A
ASN
310
n
254
ASN
310
A
ASN
311
n
255
ASN
311
A
ILE
312
n
256
ILE
312
A
ASN
313
n
257
ASN
313
A
THR
314
n
258
THR
314
A
MET
315
n
259
MET
315
A
LYS
316
n
260
LYS
316
A
ILE
317
n
261
ILE
317
A
ASP
318
n
262
ASP
318
A
TRP
319
n
263
TRP
319
A
ILE
320
n
264
ILE
320
A
HIS
321
n
265
HIS
321
A
THR
322
n
266
THR
322
A
TYR
323
n
267
TYR
323
A
GLN
324
n
268
GLN
324
A
LEU
325
n
269
LEU
325
A
VAL
326
n
270
VAL
326
A
GLU
327
n
271
GLU
327
A
GLU
328
n
272
GLU
328
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
960
-4
12040
A
GLU
95
A
O
GLU
39
1_555
A
MG
401
B
MG
MG
1_555
A
GLY
128
A
O
GLY
72
1_555
100.4
A
GLU
95
A
O
GLU
39
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
318
A
O
ASP
262
1_555
84.5
A
GLY
128
A
O
GLY
72
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
318
A
O
ASP
262
1_555
102.5
A
GLU
95
A
O
GLU
39
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
318
A
OD1
ASP
262
1_555
165.2
A
GLY
128
A
O
GLY
72
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
318
A
OD1
ASP
262
1_555
89.0
A
ASP
318
A
O
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
318
A
OD1
ASP
262
1_555
82.3
A
GLU
95
A
O
GLU
39
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
520
G
O
HOH
1_555
92.1
A
GLY
128
A
O
GLY
72
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
520
G
O
HOH
1_555
98.0
A
ASP
318
A
O
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
520
G
O
HOH
1_555
159.5
A
ASP
318
A
OD1
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
520
G
O
HOH
1_555
97.9
A
GLU
95
A
O
GLU
39
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
630
G
O
HOH
1_555
90.0
A
GLY
128
A
O
GLY
72
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
630
G
O
HOH
1_555
160.3
A
ASP
318
A
O
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
630
G
O
HOH
1_555
95.1
A
ASP
318
A
OD1
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
630
G
O
HOH
1_555
84.5
A
HOH
520
G
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
630
G
O
HOH
1_555
64.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
85
A
N
LYS
29
A
O
VAL
326
A
O
VAL
270
A
O
ILE
317
A
O
ILE
261
A
N
LEU
130
A
N
LEU
74
A
O
TRP
131
A
O
TRP
75
A
N
GLY
124
A
N
GLY
68
A
N
LYS
85
A
N
LYS
29
A
O
VAL
326
A
O
VAL
270
A
O
TYR
323
A
O
TYR
267
A
N
TYR
160
A
N
TYR
104
A
N
ILE
165
A
N
ILE
109
A
O
HIS
250
A
O
HIS
194
A
N
TRP
255
A
N
TRP
199
A
O
GLN
263
A
O
GLN
207
A
N
PHE
264
A
N
PHE
208
A
O
ALA
271
A
O
ALA
215
A
N
THR
106
A
N
THR
50
A
O
MET
150
A
O
MET
94
A
N
SER
151
A
N
SER
95
A
O
ILE
286
A
O
ILE
230
A
O
ILE
287
A
O
ILE
231
A
N
TRP
177
A
N
TRP
121
A
N
LEU
178
A
N
LEU
122
A
O
ILE
189
A
O
ILE
133
A
N
ASP
190
A
N
ASP
134
A
O
GLN
213
A
O
GLN
157
A
N
HIS
216
A
N
HIS
160
A
O
LYS
223
A
O
LYS
167
A
N
GLN
117
A
N
GLN
61
A
O
PHE
144
A
O
PHE
88
A
O
GLU
145
A
O
GLU
89
A
N
THR
135
A
N
THR
79
A
N
MET
210
A
N
MET
154
A
O
PHE
229
A
O
PHE
173
1
A
MET
57
A
MET
1
1
Y
1
A
GLY
58
A
GLY
2
1
Y
1
A
SER
59
A
SER
3
1
Y
1
A
SER
126
10.53
A
1
4.90
0.50
120.30
125.20
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
278
278
278
N
1
-3.42
0.50
120.30
116.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
278
278
278
N
1
5.41
0.90
118.30
123.71
A
A
A
CB
CG
OD1
ASP
ASP
ASP
279
279
279
N
1
A
A
CD
OE2
GLU
GLU
141
141
-0.067
0.011
1.252
1.185
N
1
A
A
CD
OE2
GLU
GLU
188
188
-0.066
0.011
1.252
1.186
N
1
A
A
CD
OE1
GLU
GLU
248
248
-0.066
0.011
1.252
1.186
N
1
A
TYR
112
-79.19
-169.21
1
A
HIS
169
-93.27
59.05
1
A
ASP
258
-162.42
-160.34
1
A
ALA
271
-105.85
-128.18
12.244
-0.65
0.00
-0.00
0.02
0.00
0.63
0.977
0.968
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.16892
0.14933
0.15030
1.30
42.42
3536
67137
5.0
98.70
0.742
0.031
RANDOM
1
THROUGHOUT
0.042
0.044
0.80
0.80
1.20
1.30
42.42
285
2505
21
0
2199
0.016
0.013
2323
0.001
0.017
1963
1.944
1.633
3165
1.551
1.579
4588
7.950
5.000
278
38.021
24.135
133
11.076
15.000
364
20.076
15.000
8
0.102
0.200
286
0.013
0.020
2637
0.001
0.020
503
1.052
1.096
1094
1.049
1.094
1093
1.481
1.645
1372
1.482
1.647
1373
2.533
1.329
1229
2.532
1.330
1230
3.602
1.905
1792
4.521
13.927
2658
4.520
13.939
2659
0.263
0.257
1.334
227
4303
20
87.43
1.3
42.42
6HY3
70662
1
11.66
3.74
98.71
1.3
1.346
1
refinement
REFMAC
5.8.0232
data reduction
XDS
data scaling
XDS
phasing
MoRDa
N
Beta-agarase C (E.C.3.2.1.81)
Three-dimensional structure of AgaC from Zobellia galactanivorans
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
HIS
63
A
HIS
7
HELX_P
A
SER
68
A
SER
12
5
AA1
6
A
SER
90
A
SER
34
HELX_P
A
SER
93
A
SER
37
5
AA2
4
A
ARG
232
A
ARG
176
HELX_P
A
LEU
234
A
LEU
178
5
AA3
3
A
LYS
303
A
LYS
247
HELX_P
A
ASN
309
A
ASN
253
5
AA4
7
disulf
2.174
A
CYS
200
A
SG
CYS
144
1_555
A
CYS
202
A
SG
CYS
146
1_555
metalc
2.319
A
GLU
95
A
O
GLU
39
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.237
A
GLY
128
A
O
GLY
72
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.258
A
ASP
318
A
O
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.399
A
ASP
318
A
OD1
ASP
262
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.378
A
MG
401
B
MG
MG
1_555
A
HOH
520
G
O
HOH
1_555
metalc
2.612
A
MG
401
B
MG
MG
1_555
A
HOH
630
G
O
HOH
1_555
HYDROLASE
Glycoside hydrolase, Zobellia galactanivorans, Agar, marine bacteria, red algae, HYDROLASE
A
VAL
114
A
VAL
58
1
A
PRO
115
A
PRO
59
11.44
A
TYR
157
A
TYR
101
1
A
PRO
158
A
PRO
102
-7.90
AGAC_ZOBGA
UNP
1
69
D7GXG5
TYDFTGNTPPPAPQGMKWVKISQLSDEFNNGFNTDKWTKSLWNYGVPVQMKAENSGVSDGKLWIKATLGNDPERWFETSR
VMSKAQVNYPMYTVSRIKGAHISAYNTFWLNNGNISNRNEIDVIENNSNPSCNCQPDFPWQMNSQYFHVVNDDTKRNKGN
FDNRELSDANPLKGVAWNEEYHTFGVWWKDATHIQFYLDGEPAGSVVSARDFTRELNIIWDLWTVDADWLGGLAKKEHLS
NNNINTMKIDWIHTYQLVEE
69
328
6HY3
69
328
D7GXG5
A
1
13
272
1
initiating methionine
MET
57
6HY3
A
D7GXG5
UNP
1
1
expression tag
GLY
58
6HY3
A
D7GXG5
UNP
2
1
expression tag
SER
59
6HY3
A
D7GXG5
UNP
3
1
expression tag
SER
60
6HY3
A
D7GXG5
UNP
4
1
expression tag
HIS
61
6HY3
A
D7GXG5
UNP
5
1
expression tag
HIS
62
6HY3
A
D7GXG5
UNP
6
1
expression tag
HIS
63
6HY3
A
D7GXG5
UNP
7
1
expression tag
HIS
64
6HY3
A
D7GXG5
UNP
8
1
expression tag
HIS
65
6HY3
A
D7GXG5
UNP
9
1
expression tag
HIS
66
6HY3
A
D7GXG5
UNP
10
1
expression tag
GLY
67
6HY3
A
D7GXG5
UNP
11
1
expression tag
SER
68
6HY3
A
D7GXG5
UNP
12
4
6
7
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
MET
84
A
MET
28
A
LYS
88
A
LYS
32
A
THR
314
A
THR
258
A
GLU
327
A
GLU
271
A
LYS
129
A
LYS
73
A
LYS
133
A
LYS
77
A
SER
123
A
SER
67
A
SER
126
A
SER
70
A
MET
84
A
MET
28
A
LYS
88
A
LYS
32
A
THR
314
A
THR
258
A
GLU
327
A
GLU
271
A
MET
159
A
MET
103
A
LYS
166
A
LYS
110
A
HIS
250
A
HIS
194
A
TRP
256
A
TRP
200
A
HIS
261
A
HIS
205
A
LEU
266
A
LEU
210
A
GLU
269
A
GLU
213
A
VAL
275
A
VAL
219
A
TRP
105
A
TRP
49
A
LYS
107
A
LYS
51
A
ARG
148
A
ARG
92
A
SER
151
A
SER
95
A
ASN
285
A
ASN
229
A
TRP
291
A
TRP
235
A
TYR
173
A
TYR
117
A
GLY
181
A
GLY
125
A
ARG
186
A
ARG
130
A
ASN
194
A
ASN
138
A
GLN
213
A
GLN
157
A
VAL
218
A
VAL
162
A
ASP
221
A
ASP
165
A
LYS
226
A
LYS
170
A
VAL
116
A
VAL
60
A
MET
118
A
MET
62
A
PHE
144
A
PHE
88
A
THR
146
A
THR
90
A
THR
135
A
THR
79
A
LEU
136
A
LEU
80
A
GLN
209
A
GLN
153
A
MET
210
A
MET
154
A
PHE
229
A
PHE
173
A
ASP
230
A
ASP
174
binding site for residue MG A 401
A
MG
401
Software
5
binding site for residue GOL A 402
A
GOL
402
Software
10
binding site for residue GOL A 403
A
GOL
403
Software
9
binding site for residue EDO A 404
A
EDO
404
Software
7
binding site for residue EDO A 405
A
EDO
405
Software
5
A
GLU
95
A
GLU
39
5
1_555
A
GLY
128
A
GLY
72
5
1_555
A
ASP
318
A
ASP
262
5
1_555
A
HOH
520
G
HOH
5
1_555
A
HOH
630
G
HOH
5
1_555
A
HIS
63
A
HIS
7
10
4_556
A
TYR
112
A
TYR
56
10
1_555
A
THR
175
A
THR
119
10
1_555
A
TRP
177
A
TRP
121
10
1_555
A
GLU
188
A
GLU
132
10
1_555
A
ASP
190
A
ASP
134
10
1_555
A
GLU
193
A
GLU
137
10
1_555
A
TRP
291
A
TRP
235
10
1_555
A
HOH
563
G
HOH
10
1_555
A
HOH
609
G
HOH
10
1_555
A
GLU
95
A
GLU
39
9
4_556
A
GLN
209
A
GLN
153
9
1_555
A
ASN
228
A
ASN
172
9
1_555
A
PHE
229
A
PHE
173
9
1_555
A
ASP
230
A
ASP
174
9
1_555
A
GLU
233
A
GLU
177
9
1_555
A
HOH
509
G
HOH
9
1_555
A
HOH
577
G
HOH
9
1_555
A
HOH
580
G
HOH
9
1_555
A
HIS
65
A
HIS
9
7
1_555
A
PHE
72
A
PHE
16
7
1_555
A
ARG
224
A
ARG
168
7
4_456
A
ALA
237
A
ALA
181
7
1_555
A
PRO
239
A
PRO
183
7
1_555
A
HOH
562
G
HOH
7
1_555
A
HOH
625
G
HOH
7
1_555
A
MET
150
A
MET
94
5
1_555
A
ASN
179
A
ASN
123
5
1_555
A
ASN
285
A
ASN
229
5
1_555
A
HOH
501
G
HOH
5
1_555
A
HOH
541
G
HOH
5
1_555
18
P 21 21 2