0.016501 0.000000 0.000000 -0.000000 0.009852 0.000000 0.000000 -0.000000 0.021416 0.00000 0.00000 0.00000 0000-0002-2158-7459 Naretto, A. Fanuel, M. 0000-0003-4767-6940 Ropartz, D. 0000-0001-6083-2034 Rogniaux, H. Larocque, R. 0000-0002-7483-2841 Czjzek, M. Tellier, C. 0000-0002-3009-6205 Michel, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 60.604 101.498 46.693 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 1083-351X 294 6923 6939 10.1074/jbc.RA118.006609 30846563 The agar-specific hydrolaseZgAgaC from the marine bacteriumZobellia galactanivoransdefines a new GH16 protein subfamily. 2019 100 1 N PIXEL 2016-12-03 DECTRIS PILATUS3 S 6M SINGLE WAVELENGTH M x-ray 1 0.97 1.0 ID29 ESRF 0.97 SYNCHROTRON ESRF BEAMLINE ID29 31391.588 Beta-agarase C 3.2.1.81 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 18.015 water 285 nat water no no MGSSHHHHHHGSTYDFTGNTPPPAPQGMKWVKISQLSDEFNNGFNTDKWTKSLWNYGVPVQMKAENSGVSDGKLWIKATL GNDPERWFETSRVMSKAQVNYPMYTVSRIKGAHISAYNTFWLNNGNISNRNEIDVIENNSNPSCNCQPDFPWQMNSQYFH VVNDDTKRNKGNFDNRELSDANPLKGVAWNEEYHTFGVWWKDATHIQFYLDGEPAGSVVSARDFTRELNIIWDLWTVDAD WLGGLAKKEHLSNNNINTMKIDWIHTYQLVEE MGSSHHHHHHGSTYDFTGNTPPPAPQGMKWVKISQLSDEFNNGFNTDKWTKSLWNYGVPVQMKAENSGVSDGKLWIKATL GNDPERWFETSRVMSKAQVNYPMYTVSRIKGAHISAYNTFWLNNGNISNRNEIDVIENNSNPSCNCQPDFPWQMNSQYFH VVNDDTKRNKGNFDNRELSDANPLKGVAWNEEYHTFGVWWKDATHIQFYLDGEPAGSVVSARDFTRELNIIWDLWTVDAD WLGGLAKKEHLSNNNINTMKIDWIHTYQLVEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 272 agaC, zobellia_4267 63186 Zobellia galactanivorans 562 Escherichia coli Biological sequence 1 2.29 46.23 VAPOR DIFFUSION, HANGING DROP 2.1 M sodium malonate and 1% glycerol 293 citation citation_author pdbx_database_proc citation citation_author pdbx_database_proc repository Initial release Data collection Database references Data collection Database references 1 0 2019-03-13 1 1 2019-03-20 1 2 2019-05-08 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation_author.identifier_ORCID _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID N PDBE Y PDBE 2018-10-19 REL REL 1 A O HOH 785 6.83 MG MAGNESIUM ION GOL GLYCEROL EDO 1,2-ETHANEDIOL HOH water MG 1 2 MG MG 401 A GOL 1 3 GOL GOL 402 A GOL 2 3 GOL GOL 403 A EDO 1 4 EDO EDO 404 A EDO 2 4 EDO EDO 405 A HOH 136 5 HOH HOH 501 A HOH 294 5 HOH HOH 502 A HOH 262 5 HOH HOH 503 A HOH 190 5 HOH HOH 504 A HOH 287 5 HOH HOH 505 A HOH 254 5 HOH HOH 506 A HOH 314 5 HOH HOH 507 A HOH 143 5 HOH HOH 508 A HOH 184 5 HOH HOH 509 A HOH 318 5 HOH HOH 510 A HOH 216 5 HOH HOH 511 A HOH 157 5 HOH HOH 512 A HOH 48 5 HOH HOH 513 A HOH 113 5 HOH HOH 514 A HOH 221 5 HOH HOH 515 A HOH 63 5 HOH HOH 516 A HOH 195 5 HOH HOH 517 A HOH 189 5 HOH HOH 518 A HOH 174 5 HOH HOH 519 A HOH 98 5 HOH HOH 520 A HOH 169 5 HOH HOH 521 A HOH 81 5 HOH HOH 522 A HOH 78 5 HOH HOH 523 A HOH 160 5 HOH HOH 524 A HOH 10 5 HOH HOH 525 A HOH 41 5 HOH HOH 526 A HOH 199 5 HOH HOH 527 A HOH 82 5 HOH HOH 528 A HOH 320 5 HOH HOH 529 A HOH 227 5 HOH HOH 530 A HOH 156 5 HOH HOH 531 A HOH 167 5 HOH HOH 532 A HOH 282 5 HOH HOH 533 A HOH 234 5 HOH HOH 534 A HOH 140 5 HOH HOH 535 A HOH 29 5 HOH HOH 536 A HOH 27 5 HOH HOH 537 A HOH 99 5 HOH HOH 538 A HOH 206 5 HOH HOH 539 A HOH 233 5 HOH HOH 540 A HOH 77 5 HOH HOH 541 A HOH 213 5 HOH HOH 542 A HOH 68 5 HOH HOH 543 A HOH 158 5 HOH HOH 544 A HOH 6 5 HOH HOH 545 A HOH 87 5 HOH HOH 546 A HOH 56 5 HOH HOH 547 A HOH 94 5 HOH HOH 548 A HOH 226 5 HOH HOH 549 A HOH 11 5 HOH HOH 550 A HOH 121 5 HOH HOH 551 A HOH 115 5 HOH HOH 552 A HOH 111 5 HOH HOH 553 A HOH 242 5 HOH HOH 554 A HOH 202 5 HOH HOH 555 A HOH 72 5 HOH HOH 556 A HOH 47 5 HOH HOH 557 A HOH 337 5 HOH HOH 558 A HOH 138 5 HOH HOH 559 A HOH 207 5 HOH HOH 560 A HOH 79 5 HOH HOH 561 A HOH 336 5 HOH HOH 562 A HOH 239 5 HOH HOH 563 A HOH 120 5 HOH HOH 564 A HOH 150 5 HOH HOH 565 A HOH 33 5 HOH HOH 566 A HOH 249 5 HOH HOH 567 A HOH 25 5 HOH HOH 568 A HOH 151 5 HOH HOH 569 A HOH 66 5 HOH HOH 570 A HOH 107 5 HOH HOH 571 A HOH 39 5 HOH HOH 572 A HOH 15 5 HOH HOH 573 A HOH 31 5 HOH HOH 574 A HOH 332 5 HOH HOH 575 A HOH 134 5 HOH HOH 576 A HOH 37 5 HOH HOH 577 A HOH 14 5 HOH HOH 578 A HOH 325 5 HOH HOH 579 A HOH 51 5 HOH HOH 580 A HOH 18 5 HOH HOH 581 A HOH 17 5 HOH HOH 582 A HOH 38 5 HOH HOH 583 A HOH 70 5 HOH HOH 584 A HOH 109 5 HOH HOH 585 A HOH 50 5 HOH HOH 586 A HOH 5 5 HOH HOH 587 A HOH 49 5 HOH HOH 588 A HOH 291 5 HOH HOH 589 A HOH 59 5 HOH HOH 590 A HOH 23 5 HOH HOH 591 A HOH 96 5 HOH HOH 592 A HOH 255 5 HOH HOH 593 A HOH 4 5 HOH HOH 594 A HOH 170 5 HOH HOH 595 A HOH 127 5 HOH HOH 596 A HOH 30 5 HOH HOH 597 A HOH 159 5 HOH HOH 598 A HOH 3 5 HOH HOH 599 A HOH 240 5 HOH HOH 600 A HOH 80 5 HOH HOH 601 A HOH 95 5 HOH HOH 602 A HOH 131 5 HOH HOH 603 A HOH 295 5 HOH HOH 604 A HOH 133 5 HOH HOH 605 A HOH 153 5 HOH HOH 606 A HOH 75 5 HOH HOH 607 A HOH 203 5 HOH HOH 608 A HOH 178 5 HOH HOH 609 A HOH 272 5 HOH HOH 610 A HOH 46 5 HOH HOH 611 A HOH 9 5 HOH HOH 612 A HOH 200 5 HOH HOH 613 A HOH 108 5 HOH HOH 614 A HOH 1 5 HOH HOH 615 A HOH 26 5 HOH HOH 616 A HOH 12 5 HOH HOH 617 A HOH 57 5 HOH HOH 618 A HOH 130 5 HOH HOH 619 A HOH 135 5 HOH HOH 620 A HOH 42 5 HOH HOH 621 A HOH 54 5 HOH HOH 622 A HOH 310 5 HOH HOH 623 A HOH 40 5 HOH HOH 624 A HOH 53 5 HOH HOH 625 A HOH 247 5 HOH HOH 626 A HOH 333 5 HOH HOH 627 A HOH 97 5 HOH HOH 628 A HOH 124 5 HOH HOH 629 A HOH 67 5 HOH HOH 630 A HOH 44 5 HOH HOH 631 A HOH 341 5 HOH HOH 632 A HOH 293 5 HOH HOH 633 A HOH 129 5 HOH HOH 634 A HOH 65 5 HOH HOH 635 A HOH 258 5 HOH HOH 636 A HOH 330 5 HOH HOH 637 A HOH 161 5 HOH HOH 638 A HOH 329 5 HOH HOH 639 A HOH 165 5 HOH HOH 640 A HOH 338 5 HOH HOH 641 A HOH 7 5 HOH HOH 642 A HOH 218 5 HOH HOH 643 A HOH 16 5 HOH HOH 644 A HOH 32 5 HOH HOH 645 A HOH 60 5 HOH HOH 646 A HOH 20 5 HOH HOH 647 A HOH 141 5 HOH HOH 648 A HOH 145 5 HOH HOH 649 A HOH 217 5 HOH HOH 650 A HOH 181 5 HOH HOH 651 A HOH 148 5 HOH HOH 652 A HOH 137 5 HOH HOH 653 A HOH 163 5 HOH HOH 654 A HOH 311 5 HOH HOH 655 A HOH 193 5 HOH HOH 656 A HOH 297 5 HOH HOH 657 A HOH 251 5 HOH HOH 658 A HOH 35 5 HOH HOH 659 A HOH 122 5 HOH HOH 660 A HOH 126 5 HOH HOH 661 A HOH 183 5 HOH HOH 662 A HOH 76 5 HOH HOH 663 A HOH 284 5 HOH HOH 664 A HOH 83 5 HOH HOH 665 A HOH 92 5 HOH HOH 666 A HOH 168 5 HOH HOH 667 A HOH 290 5 HOH HOH 668 A HOH 298 5 HOH HOH 669 A HOH 220 5 HOH HOH 670 A HOH 231 5 HOH HOH 671 A HOH 89 5 HOH HOH 672 A HOH 139 5 HOH HOH 673 A HOH 24 5 HOH HOH 674 A HOH 146 5 HOH HOH 675 A HOH 104 5 HOH HOH 676 A HOH 58 5 HOH HOH 677 A HOH 88 5 HOH HOH 678 A HOH 252 5 HOH HOH 679 A HOH 155 5 HOH HOH 680 A HOH 93 5 HOH HOH 681 A HOH 71 5 HOH HOH 682 A HOH 13 5 HOH HOH 683 A HOH 335 5 HOH HOH 684 A HOH 162 5 HOH HOH 685 A HOH 105 5 HOH HOH 686 A HOH 253 5 HOH HOH 687 A HOH 228 5 HOH HOH 688 A HOH 201 5 HOH HOH 689 A HOH 61 5 HOH HOH 690 A HOH 84 5 HOH HOH 691 A HOH 166 5 HOH HOH 692 A HOH 64 5 HOH HOH 693 A HOH 128 5 HOH HOH 694 A HOH 205 5 HOH HOH 695 A HOH 36 5 HOH HOH 696 A HOH 215 5 HOH HOH 697 A HOH 116 5 HOH HOH 698 A HOH 2 5 HOH HOH 699 A HOH 102 5 HOH HOH 700 A HOH 45 5 HOH HOH 701 A HOH 34 5 HOH HOH 702 A HOH 69 5 HOH HOH 703 A HOH 229 5 HOH HOH 704 A HOH 62 5 HOH HOH 705 A HOH 212 5 HOH HOH 706 A HOH 260 5 HOH HOH 707 A HOH 236 5 HOH HOH 708 A HOH 256 5 HOH HOH 709 A HOH 327 5 HOH HOH 710 A HOH 52 5 HOH HOH 711 A HOH 172 5 HOH HOH 712 A HOH 123 5 HOH HOH 713 A HOH 173 5 HOH HOH 714 A HOH 209 5 HOH HOH 715 A HOH 100 5 HOH HOH 716 A HOH 132 5 HOH HOH 717 A HOH 192 5 HOH HOH 718 A HOH 232 5 HOH HOH 719 A HOH 154 5 HOH HOH 720 A HOH 243 5 HOH HOH 721 A HOH 196 5 HOH HOH 722 A HOH 250 5 HOH HOH 723 A HOH 110 5 HOH HOH 724 A HOH 125 5 HOH HOH 725 A HOH 43 5 HOH HOH 726 A HOH 246 5 HOH HOH 727 A HOH 8 5 HOH HOH 728 A HOH 275 5 HOH HOH 729 A HOH 197 5 HOH HOH 730 A HOH 222 5 HOH HOH 731 A HOH 142 5 HOH HOH 732 A HOH 304 5 HOH HOH 733 A HOH 317 5 HOH HOH 734 A HOH 241 5 HOH HOH 735 A HOH 204 5 HOH HOH 736 A HOH 119 5 HOH HOH 737 A HOH 292 5 HOH HOH 738 A HOH 223 5 HOH HOH 739 A HOH 267 5 HOH HOH 740 A HOH 259 5 HOH HOH 741 A HOH 152 5 HOH HOH 742 A HOH 339 5 HOH HOH 743 A HOH 112 5 HOH HOH 744 A HOH 278 5 HOH HOH 745 A HOH 334 5 HOH HOH 746 A HOH 225 5 HOH HOH 747 A HOH 171 5 HOH HOH 748 A HOH 274 5 HOH HOH 749 A HOH 182 5 HOH HOH 750 A HOH 343 5 HOH HOH 751 A HOH 331 5 HOH HOH 752 A HOH 280 5 HOH HOH 753 A HOH 283 5 HOH HOH 754 A HOH 90 5 HOH HOH 755 A HOH 198 5 HOH HOH 756 A HOH 180 5 HOH HOH 757 A HOH 179 5 HOH HOH 758 A HOH 235 5 HOH HOH 759 A HOH 230 5 HOH HOH 760 A HOH 185 5 HOH HOH 761 A HOH 187 5 HOH HOH 762 A HOH 244 5 HOH HOH 763 A HOH 342 5 HOH HOH 764 A HOH 307 5 HOH HOH 765 A HOH 308 5 HOH HOH 766 A HOH 175 5 HOH HOH 767 A HOH 279 5 HOH HOH 768 A HOH 323 5 HOH HOH 769 A HOH 277 5 HOH HOH 770 A HOH 328 5 HOH HOH 771 A HOH 270 5 HOH HOH 772 A HOH 340 5 HOH HOH 773 A HOH 208 5 HOH HOH 774 A HOH 177 5 HOH HOH 775 A HOH 257 5 HOH HOH 776 A HOH 147 5 HOH HOH 777 A HOH 219 5 HOH HOH 778 A HOH 188 5 HOH HOH 779 A HOH 224 5 HOH HOH 780 A HOH 263 5 HOH HOH 781 A HOH 191 5 HOH HOH 782 A HOH 306 5 HOH HOH 783 A HOH 276 5 HOH HOH 784 A HOH 265 5 HOH HOH 785 A n 1 57 A n 2 58 A n 3 59 A SER 60 n 4 SER 60 A HIS 61 n 5 HIS 61 A HIS 62 n 6 HIS 62 A HIS 63 n 7 HIS 63 A HIS 64 n 8 HIS 64 A HIS 65 n 9 HIS 65 A HIS 66 n 10 HIS 66 A GLY 67 n 11 GLY 67 A SER 68 n 12 SER 68 A THR 69 n 13 THR 69 A TYR 70 n 14 TYR 70 A ASP 71 n 15 ASP 71 A PHE 72 n 16 PHE 72 A THR 73 n 17 THR 73 A GLY 74 n 18 GLY 74 A ASN 75 n 19 ASN 75 A THR 76 n 20 THR 76 A PRO 77 n 21 PRO 77 A PRO 78 n 22 PRO 78 A PRO 79 n 23 PRO 79 A ALA 80 n 24 ALA 80 A PRO 81 n 25 PRO 81 A GLN 82 n 26 GLN 82 A GLY 83 n 27 GLY 83 A MET 84 n 28 MET 84 A LYS 85 n 29 LYS 85 A TRP 86 n 30 TRP 86 A VAL 87 n 31 VAL 87 A LYS 88 n 32 LYS 88 A ILE 89 n 33 ILE 89 A SER 90 n 34 SER 90 A GLN 91 n 35 GLN 91 A LEU 92 n 36 LEU 92 A SER 93 n 37 SER 93 A ASP 94 n 38 ASP 94 A GLU 95 n 39 GLU 95 A PHE 96 n 40 PHE 96 A ASN 97 n 41 ASN 97 A ASN 98 n 42 ASN 98 A GLY 99 n 43 GLY 99 A PHE 100 n 44 PHE 100 A ASN 101 n 45 ASN 101 A THR 102 n 46 THR 102 A ASP 103 n 47 ASP 103 A LYS 104 n 48 LYS 104 A TRP 105 n 49 TRP 105 A THR 106 n 50 THR 106 A LYS 107 n 51 LYS 107 A SER 108 n 52 SER 108 A LEU 109 n 53 LEU 109 A TRP 110 n 54 TRP 110 A ASN 111 n 55 ASN 111 A TYR 112 n 56 TYR 112 A GLY 113 n 57 GLY 113 A VAL 114 n 58 VAL 114 A PRO 115 n 59 PRO 115 A VAL 116 n 60 VAL 116 A GLN 117 n 61 GLN 117 A MET 118 n 62 MET 118 A LYS 119 n 63 LYS 119 A ALA 120 n 64 ALA 120 A GLU 121 n 65 GLU 121 A ASN 122 n 66 ASN 122 A SER 123 n 67 SER 123 A GLY 124 n 68 GLY 124 A VAL 125 n 69 VAL 125 A SER 126 n 70 SER 126 A ASP 127 n 71 ASP 127 A GLY 128 n 72 GLY 128 A LYS 129 n 73 LYS 129 A LEU 130 n 74 LEU 130 A TRP 131 n 75 TRP 131 A ILE 132 n 76 ILE 132 A LYS 133 n 77 LYS 133 A ALA 134 n 78 ALA 134 A THR 135 n 79 THR 135 A LEU 136 n 80 LEU 136 A GLY 137 n 81 GLY 137 A ASN 138 n 82 ASN 138 A ASP 139 n 83 ASP 139 A PRO 140 n 84 PRO 140 A GLU 141 n 85 GLU 141 A ARG 142 n 86 ARG 142 A TRP 143 n 87 TRP 143 A PHE 144 n 88 PHE 144 A GLU 145 n 89 GLU 145 A THR 146 n 90 THR 146 A SER 147 n 91 SER 147 A ARG 148 n 92 ARG 148 A VAL 149 n 93 VAL 149 A MET 150 n 94 MET 150 A SER 151 n 95 SER 151 A LYS 152 n 96 LYS 152 A ALA 153 n 97 ALA 153 A GLN 154 n 98 GLN 154 A VAL 155 n 99 VAL 155 A ASN 156 n 100 ASN 156 A TYR 157 n 101 TYR 157 A PRO 158 n 102 PRO 158 A MET 159 n 103 MET 159 A TYR 160 n 104 TYR 160 A THR 161 n 105 THR 161 A VAL 162 n 106 VAL 162 A SER 163 n 107 SER 163 A ARG 164 n 108 ARG 164 A ILE 165 n 109 ILE 165 A LYS 166 n 110 LYS 166 A GLY 167 n 111 GLY 167 A ALA 168 n 112 ALA 168 A HIS 169 n 113 HIS 169 A ILE 170 n 114 ILE 170 A SER 171 n 115 SER 171 A ALA 172 n 116 ALA 172 A TYR 173 n 117 TYR 173 A ASN 174 n 118 ASN 174 A THR 175 n 119 THR 175 A PHE 176 n 120 PHE 176 A TRP 177 n 121 TRP 177 A LEU 178 n 122 LEU 178 A ASN 179 n 123 ASN 179 A ASN 180 n 124 ASN 180 A GLY 181 n 125 GLY 181 A ASN 182 n 126 ASN 182 A ILE 183 n 127 ILE 183 A SER 184 n 128 SER 184 A ASN 185 n 129 ASN 185 A ARG 186 n 130 ARG 186 A ASN 187 n 131 ASN 187 A GLU 188 n 132 GLU 188 A ILE 189 n 133 ILE 189 A ASP 190 n 134 ASP 190 A VAL 191 n 135 VAL 191 A ILE 192 n 136 ILE 192 A GLU 193 n 137 GLU 193 A ASN 194 n 138 ASN 194 A ASN 195 n 139 ASN 195 A SER 196 n 140 SER 196 A ASN 197 n 141 ASN 197 A PRO 198 n 142 PRO 198 A SER 199 n 143 SER 199 A CYS 200 n 144 CYS 200 A ASN 201 n 145 ASN 201 A CYS 202 n 146 CYS 202 A GLN 203 n 147 GLN 203 A PRO 204 n 148 PRO 204 A ASP 205 n 149 ASP 205 A PHE 206 n 150 PHE 206 A PRO 207 n 151 PRO 207 A TRP 208 n 152 TRP 208 A GLN 209 n 153 GLN 209 A MET 210 n 154 MET 210 A ASN 211 n 155 ASN 211 A SER 212 n 156 SER 212 A GLN 213 n 157 GLN 213 A TYR 214 n 158 TYR 214 A PHE 215 n 159 PHE 215 A HIS 216 n 160 HIS 216 A VAL 217 n 161 VAL 217 A VAL 218 n 162 VAL 218 A ASN 219 n 163 ASN 219 A ASP 220 n 164 ASP 220 A ASP 221 n 165 ASP 221 A THR 222 n 166 THR 222 A LYS 223 n 167 LYS 223 A ARG 224 n 168 ARG 224 A ASN 225 n 169 ASN 225 A LYS 226 n 170 LYS 226 A GLY 227 n 171 GLY 227 A ASN 228 n 172 ASN 228 A PHE 229 n 173 PHE 229 A ASP 230 n 174 ASP 230 A ASN 231 n 175 ASN 231 A ARG 232 n 176 ARG 232 A GLU 233 n 177 GLU 233 A LEU 234 n 178 LEU 234 A SER 235 n 179 SER 235 A ASP 236 n 180 ASP 236 A ALA 237 n 181 ALA 237 A ASN 238 n 182 ASN 238 A PRO 239 n 183 PRO 239 A LEU 240 n 184 LEU 240 A LYS 241 n 185 LYS 241 A GLY 242 n 186 GLY 242 A VAL 243 n 187 VAL 243 A ALA 244 n 188 ALA 244 A TRP 245 n 189 TRP 245 A ASN 246 n 190 ASN 246 A GLU 247 n 191 GLU 247 A GLU 248 n 192 GLU 248 A TYR 249 n 193 TYR 249 A HIS 250 n 194 HIS 250 A THR 251 n 195 THR 251 A PHE 252 n 196 PHE 252 A GLY 253 n 197 GLY 253 A VAL 254 n 198 VAL 254 A TRP 255 n 199 TRP 255 A TRP 256 n 200 TRP 256 A LYS 257 n 201 LYS 257 A ASP 258 n 202 ASP 258 A ALA 259 n 203 ALA 259 A THR 260 n 204 THR 260 A HIS 261 n 205 HIS 261 A ILE 262 n 206 ILE 262 A GLN 263 n 207 GLN 263 A PHE 264 n 208 PHE 264 A TYR 265 n 209 TYR 265 A LEU 266 n 210 LEU 266 A ASP 267 n 211 ASP 267 A GLY 268 n 212 GLY 268 A GLU 269 n 213 GLU 269 A PRO 270 n 214 PRO 270 A ALA 271 n 215 ALA 271 A GLY 272 n 216 GLY 272 A SER 273 n 217 SER 273 A VAL 274 n 218 VAL 274 A VAL 275 n 219 VAL 275 A SER 276 n 220 SER 276 A ALA 277 n 221 ALA 277 A ARG 278 n 222 ARG 278 A ASP 279 n 223 ASP 279 A PHE 280 n 224 PHE 280 A THR 281 n 225 THR 281 A ARG 282 n 226 ARG 282 A GLU 283 n 227 GLU 283 A LEU 284 n 228 LEU 284 A ASN 285 n 229 ASN 285 A ILE 286 n 230 ILE 286 A ILE 287 n 231 ILE 287 A TRP 288 n 232 TRP 288 A ASP 289 n 233 ASP 289 A LEU 290 n 234 LEU 290 A TRP 291 n 235 TRP 291 A THR 292 n 236 THR 292 A VAL 293 n 237 VAL 293 A ASP 294 n 238 ASP 294 A ALA 295 n 239 ALA 295 A ASP 296 n 240 ASP 296 A TRP 297 n 241 TRP 297 A LEU 298 n 242 LEU 298 A GLY 299 n 243 GLY 299 A GLY 300 n 244 GLY 300 A LEU 301 n 245 LEU 301 A ALA 302 n 246 ALA 302 A LYS 303 n 247 LYS 303 A LYS 304 n 248 LYS 304 A GLU 305 n 249 GLU 305 A HIS 306 n 250 HIS 306 A LEU 307 n 251 LEU 307 A SER 308 n 252 SER 308 A ASN 309 n 253 ASN 309 A ASN 310 n 254 ASN 310 A ASN 311 n 255 ASN 311 A ILE 312 n 256 ILE 312 A ASN 313 n 257 ASN 313 A THR 314 n 258 THR 314 A MET 315 n 259 MET 315 A LYS 316 n 260 LYS 316 A ILE 317 n 261 ILE 317 A ASP 318 n 262 ASP 318 A TRP 319 n 263 TRP 319 A ILE 320 n 264 ILE 320 A HIS 321 n 265 HIS 321 A THR 322 n 266 THR 322 A TYR 323 n 267 TYR 323 A GLN 324 n 268 GLN 324 A LEU 325 n 269 LEU 325 A VAL 326 n 270 VAL 326 A GLU 327 n 271 GLU 327 A GLU 328 n 272 GLU 328 A author_and_software_defined_assembly PISA 1 monomeric gel filtration 960 -4 12040 A GLU 95 A O GLU 39 1_555 A MG 401 B MG MG 1_555 A GLY 128 A O GLY 72 1_555 100.4 A GLU 95 A O GLU 39 1_555 A MG 401 B MG MG 1_555 A ASP 318 A O ASP 262 1_555 84.5 A GLY 128 A O GLY 72 1_555 A MG 401 B MG MG 1_555 A ASP 318 A O ASP 262 1_555 102.5 A GLU 95 A O GLU 39 1_555 A MG 401 B MG MG 1_555 A ASP 318 A OD1 ASP 262 1_555 165.2 A GLY 128 A O GLY 72 1_555 A MG 401 B MG MG 1_555 A ASP 318 A OD1 ASP 262 1_555 89.0 A ASP 318 A O ASP 262 1_555 A MG 401 B MG MG 1_555 A ASP 318 A OD1 ASP 262 1_555 82.3 A GLU 95 A O GLU 39 1_555 A MG 401 B MG MG 1_555 A HOH 520 G O HOH 1_555 92.1 A GLY 128 A O GLY 72 1_555 A MG 401 B MG MG 1_555 A HOH 520 G O HOH 1_555 98.0 A ASP 318 A O ASP 262 1_555 A MG 401 B MG MG 1_555 A HOH 520 G O HOH 1_555 159.5 A ASP 318 A OD1 ASP 262 1_555 A MG 401 B MG MG 1_555 A HOH 520 G O HOH 1_555 97.9 A GLU 95 A O GLU 39 1_555 A MG 401 B MG MG 1_555 A HOH 630 G O HOH 1_555 90.0 A GLY 128 A O GLY 72 1_555 A MG 401 B MG MG 1_555 A HOH 630 G O HOH 1_555 160.3 A ASP 318 A O ASP 262 1_555 A MG 401 B MG MG 1_555 A HOH 630 G O HOH 1_555 95.1 A ASP 318 A OD1 ASP 262 1_555 A MG 401 B MG MG 1_555 A HOH 630 G O HOH 1_555 84.5 A HOH 520 G O HOH 1_555 A MG 401 B MG MG 1_555 A HOH 630 G O HOH 1_555 64.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 85 A N LYS 29 A O VAL 326 A O VAL 270 A O ILE 317 A O ILE 261 A N LEU 130 A N LEU 74 A O TRP 131 A O TRP 75 A N GLY 124 A N GLY 68 A N LYS 85 A N LYS 29 A O VAL 326 A O VAL 270 A O TYR 323 A O TYR 267 A N TYR 160 A N TYR 104 A N ILE 165 A N ILE 109 A O HIS 250 A O HIS 194 A N TRP 255 A N TRP 199 A O GLN 263 A O GLN 207 A N PHE 264 A N PHE 208 A O ALA 271 A O ALA 215 A N THR 106 A N THR 50 A O MET 150 A O MET 94 A N SER 151 A N SER 95 A O ILE 286 A O ILE 230 A O ILE 287 A O ILE 231 A N TRP 177 A N TRP 121 A N LEU 178 A N LEU 122 A O ILE 189 A O ILE 133 A N ASP 190 A N ASP 134 A O GLN 213 A O GLN 157 A N HIS 216 A N HIS 160 A O LYS 223 A O LYS 167 A N GLN 117 A N GLN 61 A O PHE 144 A O PHE 88 A O GLU 145 A O GLU 89 A N THR 135 A N THR 79 A N MET 210 A N MET 154 A O PHE 229 A O PHE 173 1 A MET 57 A MET 1 1 Y 1 A GLY 58 A GLY 2 1 Y 1 A SER 59 A SER 3 1 Y 1 A SER 126 10.53 A 1 4.90 0.50 120.30 125.20 A A A NE CZ NH1 ARG ARG ARG 278 278 278 N 1 -3.42 0.50 120.30 116.88 A A A NE CZ NH2 ARG ARG ARG 278 278 278 N 1 5.41 0.90 118.30 123.71 A A A CB CG OD1 ASP ASP ASP 279 279 279 N 1 A A CD OE2 GLU GLU 141 141 -0.067 0.011 1.252 1.185 N 1 A A CD OE2 GLU GLU 188 188 -0.066 0.011 1.252 1.186 N 1 A A CD OE1 GLU GLU 248 248 -0.066 0.011 1.252 1.186 N 1 A TYR 112 -79.19 -169.21 1 A HIS 169 -93.27 59.05 1 A ASP 258 -162.42 -160.34 1 A ALA 271 -105.85 -128.18 12.244 -0.65 0.00 -0.00 0.02 0.00 0.63 0.977 0.968 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.16892 0.14933 0.15030 1.30 42.42 3536 67137 5.0 98.70 0.742 0.031 RANDOM 1 THROUGHOUT 0.042 0.044 0.80 0.80 1.20 1.30 42.42 285 2505 21 0 2199 0.016 0.013 2323 0.001 0.017 1963 1.944 1.633 3165 1.551 1.579 4588 7.950 5.000 278 38.021 24.135 133 11.076 15.000 364 20.076 15.000 8 0.102 0.200 286 0.013 0.020 2637 0.001 0.020 503 1.052 1.096 1094 1.049 1.094 1093 1.481 1.645 1372 1.482 1.647 1373 2.533 1.329 1229 2.532 1.330 1230 3.602 1.905 1792 4.521 13.927 2658 4.520 13.939 2659 0.263 0.257 1.334 227 4303 20 87.43 1.3 42.42 6HY3 70662 1 11.66 3.74 98.71 1.3 1.346 1 refinement REFMAC 5.8.0232 data reduction XDS data scaling XDS phasing MoRDa N Beta-agarase C (E.C.3.2.1.81) Three-dimensional structure of AgaC from Zobellia galactanivorans 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 5 N N A HIS 63 A HIS 7 HELX_P A SER 68 A SER 12 5 AA1 6 A SER 90 A SER 34 HELX_P A SER 93 A SER 37 5 AA2 4 A ARG 232 A ARG 176 HELX_P A LEU 234 A LEU 178 5 AA3 3 A LYS 303 A LYS 247 HELX_P A ASN 309 A ASN 253 5 AA4 7 disulf 2.174 A CYS 200 A SG CYS 144 1_555 A CYS 202 A SG CYS 146 1_555 metalc 2.319 A GLU 95 A O GLU 39 1_555 A MG 401 B MG MG 1_555 metalc 2.237 A GLY 128 A O GLY 72 1_555 A MG 401 B MG MG 1_555 metalc 2.258 A ASP 318 A O ASP 262 1_555 A MG 401 B MG MG 1_555 metalc 2.399 A ASP 318 A OD1 ASP 262 1_555 A MG 401 B MG MG 1_555 metalc 2.378 A MG 401 B MG MG 1_555 A HOH 520 G O HOH 1_555 metalc 2.612 A MG 401 B MG MG 1_555 A HOH 630 G O HOH 1_555 HYDROLASE Glycoside hydrolase, Zobellia galactanivorans, Agar, marine bacteria, red algae, HYDROLASE A VAL 114 A VAL 58 1 A PRO 115 A PRO 59 11.44 A TYR 157 A TYR 101 1 A PRO 158 A PRO 102 -7.90 AGAC_ZOBGA UNP 1 69 D7GXG5 TYDFTGNTPPPAPQGMKWVKISQLSDEFNNGFNTDKWTKSLWNYGVPVQMKAENSGVSDGKLWIKATLGNDPERWFETSR VMSKAQVNYPMYTVSRIKGAHISAYNTFWLNNGNISNRNEIDVIENNSNPSCNCQPDFPWQMNSQYFHVVNDDTKRNKGN FDNRELSDANPLKGVAWNEEYHTFGVWWKDATHIQFYLDGEPAGSVVSARDFTRELNIIWDLWTVDADWLGGLAKKEHLS NNNINTMKIDWIHTYQLVEE 69 328 6HY3 69 328 D7GXG5 A 1 13 272 1 initiating methionine MET 57 6HY3 A D7GXG5 UNP 1 1 expression tag GLY 58 6HY3 A D7GXG5 UNP 2 1 expression tag SER 59 6HY3 A D7GXG5 UNP 3 1 expression tag SER 60 6HY3 A D7GXG5 UNP 4 1 expression tag HIS 61 6HY3 A D7GXG5 UNP 5 1 expression tag HIS 62 6HY3 A D7GXG5 UNP 6 1 expression tag HIS 63 6HY3 A D7GXG5 UNP 7 1 expression tag HIS 64 6HY3 A D7GXG5 UNP 8 1 expression tag HIS 65 6HY3 A D7GXG5 UNP 9 1 expression tag HIS 66 6HY3 A D7GXG5 UNP 10 1 expression tag GLY 67 6HY3 A D7GXG5 UNP 11 1 expression tag SER 68 6HY3 A D7GXG5 UNP 12 4 6 7 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A MET 84 A MET 28 A LYS 88 A LYS 32 A THR 314 A THR 258 A GLU 327 A GLU 271 A LYS 129 A LYS 73 A LYS 133 A LYS 77 A SER 123 A SER 67 A SER 126 A SER 70 A MET 84 A MET 28 A LYS 88 A LYS 32 A THR 314 A THR 258 A GLU 327 A GLU 271 A MET 159 A MET 103 A LYS 166 A LYS 110 A HIS 250 A HIS 194 A TRP 256 A TRP 200 A HIS 261 A HIS 205 A LEU 266 A LEU 210 A GLU 269 A GLU 213 A VAL 275 A VAL 219 A TRP 105 A TRP 49 A LYS 107 A LYS 51 A ARG 148 A ARG 92 A SER 151 A SER 95 A ASN 285 A ASN 229 A TRP 291 A TRP 235 A TYR 173 A TYR 117 A GLY 181 A GLY 125 A ARG 186 A ARG 130 A ASN 194 A ASN 138 A GLN 213 A GLN 157 A VAL 218 A VAL 162 A ASP 221 A ASP 165 A LYS 226 A LYS 170 A VAL 116 A VAL 60 A MET 118 A MET 62 A PHE 144 A PHE 88 A THR 146 A THR 90 A THR 135 A THR 79 A LEU 136 A LEU 80 A GLN 209 A GLN 153 A MET 210 A MET 154 A PHE 229 A PHE 173 A ASP 230 A ASP 174 binding site for residue MG A 401 A MG 401 Software 5 binding site for residue GOL A 402 A GOL 402 Software 10 binding site for residue GOL A 403 A GOL 403 Software 9 binding site for residue EDO A 404 A EDO 404 Software 7 binding site for residue EDO A 405 A EDO 405 Software 5 A GLU 95 A GLU 39 5 1_555 A GLY 128 A GLY 72 5 1_555 A ASP 318 A ASP 262 5 1_555 A HOH 520 G HOH 5 1_555 A HOH 630 G HOH 5 1_555 A HIS 63 A HIS 7 10 4_556 A TYR 112 A TYR 56 10 1_555 A THR 175 A THR 119 10 1_555 A TRP 177 A TRP 121 10 1_555 A GLU 188 A GLU 132 10 1_555 A ASP 190 A ASP 134 10 1_555 A GLU 193 A GLU 137 10 1_555 A TRP 291 A TRP 235 10 1_555 A HOH 563 G HOH 10 1_555 A HOH 609 G HOH 10 1_555 A GLU 95 A GLU 39 9 4_556 A GLN 209 A GLN 153 9 1_555 A ASN 228 A ASN 172 9 1_555 A PHE 229 A PHE 173 9 1_555 A ASP 230 A ASP 174 9 1_555 A GLU 233 A GLU 177 9 1_555 A HOH 509 G HOH 9 1_555 A HOH 577 G HOH 9 1_555 A HOH 580 G HOH 9 1_555 A HIS 65 A HIS 9 7 1_555 A PHE 72 A PHE 16 7 1_555 A ARG 224 A ARG 168 7 4_456 A ALA 237 A ALA 181 7 1_555 A PRO 239 A PRO 183 7 1_555 A HOH 562 G HOH 7 1_555 A HOH 625 G HOH 7 1_555 A MET 150 A MET 94 5 1_555 A ASN 179 A ASN 123 5 1_555 A ASN 285 A ASN 229 5 1_555 A HOH 501 G HOH 5 1_555 A HOH 541 G HOH 5 1_555 18 P 21 21 2