0.019238 0.000000 0.000000 0.000000 0.009145 0.000000 0.000000 0.000000 0.009266 0.000000 0.000000 0.000000 Shihoya, W. Yamashita, K. Nureki, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 51.980 109.350 107.920 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C21 H40 O4 356.540 (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate 1-Oleoyl-R-glycerol non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C20 H28 O 284.436 RETINAL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N C N 252 N C N 253 N C N 254 N C N 255 N C N 256 N C N 257 N C N 258 N C N 259 N C N 260 N C N 261 N C N 262 N C N 263 N C N 264 N C N 265 N C N 266 N C N 267 N C N 268 N C N 269 N C N 270 R C N 271 N O N 272 N O N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N C N 356 N C N 357 N C N 358 N C N 359 N C N 360 N C N 361 N C N 362 N C N 363 N C N 364 N C N 365 N C N 366 N C N 367 N C N 368 N C N 369 N C N 370 N O N 371 N C N 372 N C N 373 N C N 374 N C N 375 N C N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 R C N 423 N O N 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N N Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C N 473 N O N 474 N O N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 N C N 491 N C N 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 Z sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N doub N 317 N sing Y 318 N doub N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 E doub N 358 N sing N 359 N sing N 360 N sing N 361 E doub N 362 N sing N 363 N sing N 364 N sing N 365 E doub N 366 N sing N 367 N sing N 368 N sing N 369 E doub N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub Y 435 N sing Y 436 N sing N 437 N sing Y 438 N sing Y 439 N doub N 440 N sing Y 441 N doub N 442 N sing Y 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing Y 458 N doub Y 459 N sing Y 460 N sing N 461 N sing Y 462 N doub N 463 N sing Y 464 N doub N 465 N sing Y 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N doub N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing UK Nature NATUAS 0006 1476-4687 574 132 136 10.1038/s41586-019-1604-6 31554965 Crystal structure of heliorhodopsin. 2019 10.2210/pdb6is6/pdb pdb_00006is6 100 1 N PIXEL 2018-04-18 DECTRIS EIGER X 9M Si(111) SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL32XU SPring-8 1.0000 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 29886.301 heliorhodopsin 1 man polymer 356.540 (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate 14 syn non-polymer 284.436 RETINAL 1 nat non-polymer 18.015 water 31 nat water no no MHHHHHHTENEEINFRKFRIFNGIMGVIHLIQVFLVLYLSNNFSLPITVNKPVYNEITNSISPVAETLFSIEIGPLVAMF LFISATAHILIATVLYYRYVQNLKNHMNPYRWFEYSISASFMIVIIAMLTTIYDLGTLLALFTLTAVMNLMGLMMELHNQ TTQNTNWTSYIIGCIAGFVPWIVIFIPLISAESVPDFVIYIFISIAIFFNCFAINMYLQYKKIGKWKNYLHGEKVYIILS LVAKSALAWQVFAGTLRPM MHHHHHHTENEEINFRKFRIFNGIMGVIHLIQVFLVLYLSNNFSLPITVNKPVYNEITNSISPVAETLFSIEIGPLVAMF LFISATAHILIATVLYYRYVQNLKNHMNPYRWFEYSISASFMIVIIAMLTTIYDLGTLLALFTLTAVMNLMGLMMELHNQ TTQNTNWTSYIIGCIAGFVPWIVIFIPLISAESVPDFVIYIFISIAIFFNCFAINMYLQYKKIGKWKNYLHGEKVYIILS LVAKSALAWQVFAGTLRPM A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 259 1803816 Thermoplasmatales archaeon SG8-52-1 562 Escherichia coli C41(Rosetta) plasmid Biological sequence pET21a(+) 1 2.57 52.06 LIPIDIC CUBIC PHASE 8.0 30% PEG 350MME, 100mM Tris-HCl, pH 8.0, 100mM potassium citrate 293 citation citation entity_src_gen pdbx_entry_details chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Data collection Database references Source and taxonomy Structure summary Data collection Database references Refinement description 1 0 2019-09-25 1 1 2019-10-09 1 2 2019-10-16 1 3 2019-11-20 1 4 2023-11-22 _citation.pdbx_database_id_PubMed _citation.title _citation.journal_volume _citation.page_first _citation.page_last _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_scientific_name _pdbx_entry_details.sequence_details _database_2.pdbx_DOI _database_2.pdbx_database_accession N PDBJ Y PDBJ 2018-11-15 REL REL RET RET SUBJECT OF INVESTIGATION OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate RET RETINAL HOH water Y 5AX0 PDB experimental model OLC 301 2 OLC OLC 301 A OLC 401 2 OLC OLC 302 A OLC 501 2 OLC OLC 303 A OLC 601 2 OLC OLC 304 A OLC 701 2 OLC OLC 305 A OLC 801 2 OLC OLC 306 A OLC 901 2 OLC OLC 307 A OLC 1001 2 OLC OLC 308 A OLC 1101 2 OLC OLC 309 A OLC 1201 2 OLC OLC 310 A OLC 1301 2 OLC OLC 311 A OLC 1401 2 OLC OLC 312 A RET 1501 3 RET RET 313 A OLC 101 2 OLC OLC 314 A OLC 102 2 OLC OLC 315 A HOH 8 4 HOH HOH 401 A HOH 40 4 HOH HOH 402 A HOH 11 4 HOH HOH 403 A HOH 14 4 HOH HOH 404 A HOH 7 4 HOH HOH 405 A HOH 9 4 HOH HOH 406 A HOH 10 4 HOH HOH 407 A HOH 5 4 HOH HOH 408 A HOH 12 4 HOH HOH 409 A HOH 22 4 HOH HOH 410 A HOH 4 4 HOH HOH 411 A HOH 25 4 HOH HOH 412 A HOH 2 4 HOH HOH 413 A HOH 39 4 HOH HOH 414 A HOH 13 4 HOH HOH 415 A HOH 1 4 HOH HOH 416 A HOH 16 4 HOH HOH 417 A HOH 34 4 HOH HOH 418 A HOH 3 4 HOH HOH 419 A HOH 21 4 HOH HOH 420 A HOH 15 4 HOH HOH 421 A HOH 19 4 HOH HOH 422 A HOH 20 4 HOH HOH 423 A HOH 6 4 HOH HOH 424 A HOH 30 4 HOH HOH 425 A HOH 18 4 HOH HOH 426 A HOH 26 4 HOH HOH 427 A HOH 23 4 HOH HOH 428 A HOH 24 4 HOH HOH 429 A HOH 41 4 HOH HOH 430 A HOH 27 4 HOH HOH 431 A n 1 -5 A n 2 -4 A n 3 -3 A n 4 -2 A n 5 -1 A n 6 0 A n 7 1 A n 8 2 A n 9 3 A ASN 4 n 10 ASN 4 A GLU 5 n 11 GLU 5 A GLU 6 n 12 GLU 6 A ILE 7 n 13 ILE 7 A ASN 8 n 14 ASN 8 A PHE 9 n 15 PHE 9 A ARG 10 n 16 ARG 10 A LYS 11 n 17 LYS 11 A PHE 12 n 18 PHE 12 A ARG 13 n 19 ARG 13 A ILE 14 n 20 ILE 14 A PHE 15 n 21 PHE 15 A ASN 16 n 22 ASN 16 A GLY 17 n 23 GLY 17 A ILE 18 n 24 ILE 18 A MET 19 n 25 MET 19 A GLY 20 n 26 GLY 20 A VAL 21 n 27 VAL 21 A ILE 22 n 28 ILE 22 A HIS 23 n 29 HIS 23 A LEU 24 n 30 LEU 24 A ILE 25 n 31 ILE 25 A GLN 26 n 32 GLN 26 A VAL 27 n 33 VAL 27 A PHE 28 n 34 PHE 28 A LEU 29 n 35 LEU 29 A VAL 30 n 36 VAL 30 A LEU 31 n 37 LEU 31 A TYR 32 n 38 TYR 32 A LEU 33 n 39 LEU 33 A SER 34 n 40 SER 34 A ASN 35 n 41 ASN 35 A ASN 36 n 42 ASN 36 A PHE 37 n 43 PHE 37 A SER 38 n 44 SER 38 A LEU 39 n 45 LEU 39 A PRO 40 n 46 PRO 40 A ILE 41 n 47 ILE 41 A THR 42 n 48 THR 42 A VAL 43 n 49 VAL 43 A ASN 44 n 50 ASN 44 A LYS 45 n 51 LYS 45 A PRO 46 n 52 PRO 46 A VAL 47 n 53 VAL 47 A TYR 48 n 54 TYR 48 A ASN 49 n 55 ASN 49 A GLU 50 n 56 GLU 50 A ILE 51 n 57 ILE 51 A THR 52 n 58 THR 52 A ASN 53 n 59 ASN 53 A SER 54 n 60 SER 54 A ILE 55 n 61 ILE 55 A SER 56 n 62 SER 56 A PRO 57 n 63 PRO 57 A VAL 58 n 64 VAL 58 A ALA 59 n 65 ALA 59 A GLU 60 n 66 GLU 60 A THR 61 n 67 THR 61 A LEU 62 n 68 LEU 62 A PHE 63 n 69 PHE 63 A SER 64 n 70 SER 64 A ILE 65 n 71 ILE 65 A GLU 66 n 72 GLU 66 A ILE 67 n 73 ILE 67 A GLY 68 n 74 GLY 68 A PRO 69 n 75 PRO 69 A LEU 70 n 76 LEU 70 A VAL 71 n 77 VAL 71 A ALA 72 n 78 ALA 72 A MET 73 n 79 MET 73 A PHE 74 n 80 PHE 74 A LEU 75 n 81 LEU 75 A PHE 76 n 82 PHE 76 A ILE 77 n 83 ILE 77 A SER 78 n 84 SER 78 A ALA 79 n 85 ALA 79 A THR 80 n 86 THR 80 A ALA 81 n 87 ALA 81 A HIS 82 n 88 HIS 82 A ILE 83 n 89 ILE 83 A LEU 84 n 90 LEU 84 A ILE 85 n 91 ILE 85 A ALA 86 n 92 ALA 86 A THR 87 n 93 THR 87 A VAL 88 n 94 VAL 88 A LEU 89 n 95 LEU 89 A TYR 90 n 96 TYR 90 A TYR 91 n 97 TYR 91 A ARG 92 n 98 ARG 92 A TYR 93 n 99 TYR 93 A VAL 94 n 100 VAL 94 A GLN 95 n 101 GLN 95 A ASN 96 n 102 ASN 96 A LEU 97 n 103 LEU 97 A LYS 98 n 104 LYS 98 A ASN 99 n 105 ASN 99 A HIS 100 n 106 HIS 100 A MET 101 n 107 MET 101 A ASN 102 n 108 ASN 102 A PRO 103 n 109 PRO 103 A TYR 104 n 110 TYR 104 A ARG 105 n 111 ARG 105 A TRP 106 n 112 TRP 106 A PHE 107 n 113 PHE 107 A GLU 108 n 114 GLU 108 A TYR 109 n 115 TYR 109 A SER 110 n 116 SER 110 A ILE 111 n 117 ILE 111 A SER 112 n 118 SER 112 A ALA 113 n 119 ALA 113 A SER 114 n 120 SER 114 A PHE 115 n 121 PHE 115 A MET 116 n 122 MET 116 A ILE 117 n 123 ILE 117 A VAL 118 n 124 VAL 118 A ILE 119 n 125 ILE 119 A ILE 120 n 126 ILE 120 A ALA 121 n 127 ALA 121 A MET 122 n 128 MET 122 A LEU 123 n 129 LEU 123 A THR 124 n 130 THR 124 A THR 125 n 131 THR 125 A ILE 126 n 132 ILE 126 A TYR 127 n 133 TYR 127 A ASP 128 n 134 ASP 128 A LEU 129 n 135 LEU 129 A GLY 130 n 136 GLY 130 A THR 131 n 137 THR 131 A LEU 132 n 138 LEU 132 A LEU 133 n 139 LEU 133 A ALA 134 n 140 ALA 134 A LEU 135 n 141 LEU 135 A PHE 136 n 142 PHE 136 A THR 137 n 143 THR 137 A LEU 138 n 144 LEU 138 A THR 139 n 145 THR 139 A ALA 140 n 146 ALA 140 A VAL 141 n 147 VAL 141 A MET 142 n 148 MET 142 A ASN 143 n 149 ASN 143 A LEU 144 n 150 LEU 144 A MET 145 n 151 MET 145 A GLY 146 n 152 GLY 146 A LEU 147 n 153 LEU 147 A MET 148 n 154 MET 148 A MET 149 n 155 MET 149 A GLU 150 n 156 GLU 150 A LEU 151 n 157 LEU 151 A HIS 152 n 158 HIS 152 A ASN 153 n 159 ASN 153 A GLN 154 n 160 GLN 154 A THR 155 n 161 THR 155 A THR 156 n 162 THR 156 A GLN 157 n 163 GLN 157 A ASN 158 n 164 ASN 158 A THR 159 n 165 THR 159 A ASN 160 n 166 ASN 160 A TRP 161 n 167 TRP 161 A THR 162 n 168 THR 162 A SER 163 n 169 SER 163 A TYR 164 n 170 TYR 164 A ILE 165 n 171 ILE 165 A ILE 166 n 172 ILE 166 A GLY 167 n 173 GLY 167 A CYS 168 n 174 CYS 168 A ILE 169 n 175 ILE 169 A ALA 170 n 176 ALA 170 A GLY 171 n 177 GLY 171 A PHE 172 n 178 PHE 172 A VAL 173 n 179 VAL 173 A PRO 174 n 180 PRO 174 A TRP 175 n 181 TRP 175 A ILE 176 n 182 ILE 176 A VAL 177 n 183 VAL 177 A ILE 178 n 184 ILE 178 A PHE 179 n 185 PHE 179 A ILE 180 n 186 ILE 180 A PRO 181 n 187 PRO 181 A LEU 182 n 188 LEU 182 A ILE 183 n 189 ILE 183 A SER 184 n 190 SER 184 A ALA 185 n 191 ALA 185 A GLU 186 n 192 GLU 186 A SER 187 n 193 SER 187 A VAL 188 n 194 VAL 188 A PRO 189 n 195 PRO 189 A ASP 190 n 196 ASP 190 A PHE 191 n 197 PHE 191 A VAL 192 n 198 VAL 192 A ILE 193 n 199 ILE 193 A TYR 194 n 200 TYR 194 A ILE 195 n 201 ILE 195 A PHE 196 n 202 PHE 196 A ILE 197 n 203 ILE 197 A SER 198 n 204 SER 198 A ILE 199 n 205 ILE 199 A ALA 200 n 206 ALA 200 A ILE 201 n 207 ILE 201 A PHE 202 n 208 PHE 202 A PHE 203 n 209 PHE 203 A ASN 204 n 210 ASN 204 A CYS 205 n 211 CYS 205 A PHE 206 n 212 PHE 206 A ALA 207 n 213 ALA 207 A ILE 208 n 214 ILE 208 A ASN 209 n 215 ASN 209 A MET 210 n 216 MET 210 A TYR 211 n 217 TYR 211 A LEU 212 n 218 LEU 212 A GLN 213 n 219 GLN 213 A TYR 214 n 220 TYR 214 A LYS 215 n 221 LYS 215 A LYS 216 n 222 LYS 216 A ILE 217 n 223 ILE 217 A GLY 218 n 224 GLY 218 A LYS 219 n 225 LYS 219 A TRP 220 n 226 TRP 220 A LYS 221 n 227 LYS 221 A ASN 222 n 228 ASN 222 A TYR 223 n 229 TYR 223 A LEU 224 n 230 LEU 224 A HIS 225 n 231 HIS 225 A GLY 226 n 232 GLY 226 A GLU 227 n 233 GLU 227 A LYS 228 n 234 LYS 228 A VAL 229 n 235 VAL 229 A TYR 230 n 236 TYR 230 A ILE 231 n 237 ILE 231 A ILE 232 n 238 ILE 232 A LEU 233 n 239 LEU 233 A SER 234 n 240 SER 234 A LEU 235 n 241 LEU 235 A VAL 236 n 242 VAL 236 A ALA 237 n 243 ALA 237 A LYS 238 n 244 LYS 238 A SER 239 n 245 SER 239 A ALA 240 n 246 ALA 240 A LEU 241 n 247 LEU 241 A ALA 242 n 248 ALA 242 A TRP 243 n 249 TRP 243 A GLN 244 n 250 GLN 244 A VAL 245 n 251 VAL 245 A PHE 246 n 252 PHE 246 A ALA 247 n 253 ALA 247 A GLY 248 n 254 GLY 248 A THR 249 n 255 THR 249 A LEU 250 n 256 LEU 250 A ARG 251 n 257 ARG 251 A PRO 252 n 258 PRO 252 A MET 253 n 259 MET 253 A 10.5281/zenodo.3333323 diffraction image data 10.5281/zenodo.3333323 author_and_software_defined_assembly PISA 2 dimeric gel filtration 6270 -46 22460 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 53.9600000000 A N ILE 41 A N ILE 47 A O LEU 62 A O LEU 68 A N VAL 47 A N VAL 53 A O SER 56 A O SER 62 1 A CG ASN 4 A CG ASN 10 1 Y 1 A OD1 ASN 4 A OD1 ASN 10 1 Y 1 A ND2 ASN 4 A ND2 ASN 10 1 Y 1 A CG GLU 5 A CG GLU 11 1 Y 1 A CD GLU 5 A CD GLU 11 1 Y 1 A OE1 GLU 5 A OE1 GLU 11 1 Y 1 A OE2 GLU 5 A OE2 GLU 11 1 Y 1 A CG GLU 6 A CG GLU 12 1 Y 1 A CD GLU 6 A CD GLU 12 1 Y 1 A OE1 GLU 6 A OE1 GLU 12 1 Y 1 A OE2 GLU 6 A OE2 GLU 12 1 Y 1 A C18 OLC 301 B C18 OLC 1 1 N 1 A C17 OLC 301 B C17 OLC 1 1 N 1 A C16 OLC 301 B C16 OLC 1 1 N 1 A C15 OLC 301 B C15 OLC 1 1 N 1 A C13 OLC 301 B C13 OLC 1 1 N 1 A C14 OLC 301 B C14 OLC 1 1 N 1 A C18 OLC 302 C C18 OLC 1 1 N 1 A C17 OLC 302 C C17 OLC 1 1 N 1 A C11 OLC 302 C C11 OLC 1 1 N 1 A C16 OLC 302 C C16 OLC 1 1 N 1 A C12 OLC 302 C C12 OLC 1 1 N 1 A C15 OLC 302 C C15 OLC 1 1 N 1 A C13 OLC 302 C C13 OLC 1 1 N 1 A C14 OLC 302 C C14 OLC 1 1 N 1 A C18 OLC 307 H C18 OLC 1 1 N 1 A C17 OLC 307 H C17 OLC 1 1 N 1 A C16 OLC 307 H C16 OLC 1 1 N 1 A C15 OLC 307 H C15 OLC 1 1 N 1 A MET -5 A MET 1 1 Y 1 A HIS -4 A HIS 2 1 Y 1 A HIS -3 A HIS 3 1 Y 1 A HIS -2 A HIS 4 1 Y 1 A HIS -1 A HIS 5 1 Y 1 A HIS 0 A HIS 6 1 Y 1 A HIS 1 A HIS 7 1 Y 1 A THR 2 A THR 8 1 Y 1 A GLU 3 A GLU 9 1 Y 1 A ASN 35 -71.41 -166.67 1 A ASN 53 71.79 -10.14 1 A THR 87 -108.39 -83.27 1 A THR 125 75.63 31.54 102.230 39.1079 18.450 0.2254 0.1890 0.1908 2.4000 48.7730 618 12361 5.0000 99.7200 0.2500 1 THROUGHOUT 1.330 MOLECULAR REPLACEMENT 24.0900 0.9000 1.1100 5AX0 2.4000 48.7730 31 2397 53.51 36.38 352 0 2014 250 0.2844 0.0000 0.1949 2.6417 153 2887 100.0000 0.2673 0.0000 0.1858 3.0240 154 2894 100.0000 0.2132 0.0000 0.1890 3.8096 152 2922 100.0000 0.2066 0.0000 0.1884 48.773 159 3040 99.0000 32.630 2.400 48.773 6IS6 12404 0.995 0.324 0.328 1.218 1 13.680 437886 35.302 318 99.900 2.472 2.400 2.550 2.160 2010 0.508 2.506 1 35.575 100.000 1.387 2.550 2.720 3.500 1802 0.708 1.406 1 36.308 100.000 0.852 2.720 2.940 5.570 1743 0.927 0.863 1 36.373 99.900 0.567 2.940 3.220 7.930 1597 0.968 0.574 1 35.820 100.000 0.339 3.220 3.600 13.140 1459 0.982 0.344 1 34.967 100.000 0.204 3.600 4.160 21.570 1300 0.993 0.207 1 32.496 100.000 0.142 4.160 5.090 32.260 1097 0.994 0.144 1 33.536 99.300 0.105 5.090 7.200 32.310 876 0.998 0.106 1 36.982 99.900 0.062 7.200 48.773 49.670 520 1.000 0.063 1 34.427 99.000 refinement PHENIX 1.14_3260 data scaling XSCALE data extraction PDB_EXTRACT 3.24 data reduction XDS phasing PHASER N Crystal structure of Thermoplasmatales archaeon heliorhodopsin 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 2 N N 2 N N 4 N N A ASN 4 A ASN 10 HELX_P A SER 34 A SER 40 1 AA1 31 A ILE 67 A ILE 73 HELX_P A THR 87 A THR 93 1 AA2 21 A LEU 89 A LEU 95 HELX_P A ASN 99 A ASN 105 1 AA3 11 A ASN 102 A ASN 108 HELX_P A LEU 123 A LEU 129 1 AA4 22 A ASP 128 A ASP 134 HELX_P A ASN 153 A ASN 159 1 AA5 26 A TRP 161 A TRP 167 HELX_P A ALA 185 A ALA 191 1 AA6 25 A PRO 189 A PRO 195 HELX_P A LYS 216 A LYS 222 1 AA7 28 A GLY 218 A GLY 224 HELX_P A LYS 221 A LYS 227 5 AA8 4 A ASN 222 A ASN 228 HELX_P A LEU 250 A LEU 256 1 AA9 29 covale 1.248 one A LYS 238 A NZ LYS 244 1_555 A RET 313 N C15 RET 1_555 MEMBRANE PROTEIN alpha-helical, MEMBRANE PROTEIN A0A151EDA9_9EURY UNP 1 2 A0A151EDA9 TENEEINFRKFRIFNGIMGVIHLIQVFLVLYLSNNFSLPITVNKPVYNEITNSISPVAETLFSIEIGPLVAMFLFISATA HILIATVLYYRYVQNLKNHMNPYRWFEYSISASFMIVIIAMLTTIYDLGTLLALFTLTAVMNLMGLMMELHNQTTQNTNW TSYIIGCIAGFVPWIVIFIPLISAESVPDFVIYIFISIAIFFNCFAINMYLQYKKIGKWKNYLHGEKVYIILSLVAKSAL AWQVFAGTLRPM 2 253 6IS6 2 253 A0A151EDA9 A 1 8 259 1 expression tag MET -5 6IS6 A A0A151EDA9 UNP 1 1 expression tag HIS -4 6IS6 A A0A151EDA9 UNP 2 1 expression tag HIS -3 6IS6 A A0A151EDA9 UNP 3 1 expression tag HIS -2 6IS6 A A0A151EDA9 UNP 4 1 expression tag HIS -1 6IS6 A A0A151EDA9 UNP 5 1 expression tag HIS 0 6IS6 A A0A151EDA9 UNP 6 1 expression tag HIS 1 6IS6 A A0A151EDA9 UNP 7 2 2 anti-parallel anti-parallel A SER 38 A SER 44 A ASN 44 A ASN 50 A ALA 59 A ALA 65 A GLU 66 A GLU 72 A VAL 47 A VAL 53 A TYR 48 A TYR 54 A ILE 55 A ILE 61 A SER 56 A SER 62 binding site for residue OLC A 301 A OLC 301 Software 4 binding site for residue OLC A 302 A OLC 302 Software 4 binding site for residue OLC A 303 A OLC 303 Software 12 binding site for residue OLC A 304 A OLC 304 Software 7 binding site for residue OLC A 305 A OLC 305 Software 7 binding site for residue OLC A 306 A OLC 306 Software 7 binding site for residue OLC A 307 A OLC 307 Software 5 binding site for residue OLC A 308 A OLC 308 Software 10 binding site for residue OLC A 309 A OLC 309 Software 11 binding site for residue OLC A 310 A OLC 310 Software 4 binding site for residue OLC A 311 A OLC 311 Software 9 binding site for residue OLC A 312 A OLC 312 Software 4 binding site for residue RET A 313 A RET 313 Software 13 binding site for residue OLC A 314 A OLC 314 Software 6 binding site for residue OLC A 315 A OLC 315 Software 4 A LEU 31 A LEU 37 4 1_555 A SER 64 A SER 70 4 1_555 A PRO 69 A PRO 75 4 1_555 A PHE 76 A PHE 82 4 1_555 A SER 239 A SER 245 4 1_555 A ARG 251 A ARG 257 4 1_555 A OLC 314 O OLC 4 1_555 A OLC 315 P OLC 4 1_555 A TYR 164 A TYR 170 12 1_555 A GLY 171 A GLY 177 12 1_555 A PHE 172 A PHE 178 12 1_555 A TRP 175 A TRP 181 12 1_555 A PHE 179 A PHE 185 12 1_555 A ALA 200 A ALA 206 12 1_555 A PHE 203 A PHE 209 12 1_555 A ASN 204 A ASN 210 12 1_555 A ILE 208 A ILE 214 12 1_555 A OLC 308 I OLC 12 1_555 A OLC 311 L OLC 12 1_555 A RET 313 N RET 12 1_555 A MET 73 A MET 79 7 1_555 A THR 80 A THR 86 7 1_555 A ALA 81 A ALA 87 7 1_555 A LEU 89 A LEU 95 7 1_555 A TYR 104 A TYR 110 7 1_555 A GLU 108 A GLU 114 7 1_555 A OLC 307 H OLC 7 1_555 A TYR 32 A TYR 38 7 8_545 A PHE 202 A PHE 208 7 1_555 A CYS 205 A CYS 211 7 1_555 A LYS 219 A LYS 225 7 1_555 A HIS 225 A HIS 231 7 1_555 A LYS 228 A LYS 234 7 1_555 A ILE 232 A ILE 238 7 1_555 A ARG 92 A ARG 98 7 1_555 A ASN 96 A ASN 102 7 1_555 A ASN 99 A ASN 105 7 1_555 A PHE 107 A PHE 113 7 1_555 A ASN 160 A ASN 166 7 3_555 A TRP 161 A TRP 167 7 3_555 A THR 162 A THR 168 7 3_555 A ILE 65 A ILE 71 5 1_555 A LEU 132 A LEU 138 5 1_555 A LEU 133 A LEU 139 5 1_555 A PHE 136 A PHE 142 5 1_555 A OLC 304 E OLC 5 1_555 A TRP 161 A TRP 167 10 1_555 A TYR 164 A TYR 170 10 1_555 A CYS 168 A CYS 174 10 1_555 A ILE 169 A ILE 175 10 1_555 A PHE 172 A PHE 178 10 1_555 A VAL 173 A VAL 179 10 1_555 A TYR 211 A TYR 217 10 1_555 A LYS 215 A LYS 221 10 1_555 A OLC 303 D OLC 10 1_555 A OLC 312 M OLC 10 3_555 A ARG 13 A ARG 19 11 8_545 A ILE 14 A ILE 20 11 8_545 A GLY 17 A GLY 23 11 8_545 A VAL 21 A VAL 27 11 8_545 A ALA 86 A ALA 92 11 8_545 A PHE 191 A PHE 197 11 1_555 A TYR 194 A TYR 200 11 1_555 A SER 198 A SER 204 11 1_555 A GLN 244 A GLN 250 11 1_555 A ALA 247 A ALA 253 11 1_555 A GLY 248 A GLY 254 11 1_555 A ARG 10 A ARG 16 4 1_555 A LYS 11 A LYS 17 4 1_555 A ILE 18 A ILE 24 4 1_555 A OLC 311 L OLC 4 8_445 A ARG 10 A ARG 16 9 8_545 A LEU 182 A LEU 188 9 1_555 A ALA 185 A ALA 191 9 1_555 A VAL 188 A VAL 194 9 1_555 A ILE 193 A ILE 199 9 1_555 A PHE 196 A PHE 202 9 1_555 A ASN 204 A ASN 210 9 1_555 A OLC 303 D OLC 9 1_555 A OLC 310 K OLC 9 8_545 A LYS 45 A LYS 51 4 1_555 A GLU 60 A GLU 66 4 1_555 A SER 184 A SER 190 4 3_555 A OLC 308 I OLC 4 3_555 A TRP 106 A TRP 112 13 1_555 A TYR 109 A TYR 115 13 1_555 A SER 112 A SER 118 13 1_555 A ALA 113 A ALA 119 13 1_555 A MET 142 A MET 148 13 1_555 A ASN 143 A ASN 149 13 1_555 A TYR 164 A TYR 170 13 1_555 A GLY 167 A GLY 173 13 1_555 A PHE 203 A PHE 209 13 1_555 A PHE 206 A PHE 212 13 1_555 A ALA 207 A ALA 213 13 1_555 A LYS 238 A LYS 244 13 1_555 A OLC 303 D OLC 13 1_555 A ILE 22 A ILE 28 6 1_555 A ILE 25 A ILE 31 6 1_555 A TYR 211 A TYR 217 6 8_445 A ILE 217 A ILE 223 6 8_445 A OLC 302 C OLC 6 1_555 A OLC 315 P OLC 6 1_555 A TRP 243 A TRP 249 4 1_555 A ARG 251 A ARG 257 4 1_555 A OLC 302 C OLC 4 1_555 A OLC 314 O OLC 4 1_555 20 C 2 2 21