0.022487
0.012983
0.000000
0.000000
0.025966
0.000000
0.000000
0.000000
0.011409
0.00000
0.00000
0.00000
Yamanishi, K.
Shibata, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
44.470
44.470
87.650
150112.484
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Acta Crystallogr F Struct Biol Commun
ACSFEN
2053-230X
75
116
122
10.1107/S2053230X18018290
30713163
High-resolution structure of a Y27W mutant of the Dishevelled2 DIX domain.
2019
0000-0002-2859-0589
10.2210/pdb6iw3/pdb
pdb_00006iw3
100
1
N
CCD
2010-05-18
RAYONIX MX225HE
SINGLE WAVELENGTH
M
x-ray
1
0.9000
1.0
BL44XU
SPring-8
0.9000
SYNCHROTRON
SPRING-8 BEAMLINE BL44XU
9311.475
Segment polarity protein dishevelled homolog DVL-2
DIX-domain
Y27W, C80S
1
man
polymer
18.015
water
59
nat
water
Dishevelled-2,DSH homolog 2
no
no
GETKVIYHLDEEETPWLVKIPVPAERITLGDFKSVLQRPAGAKYFFKSMDQDFGVVKEEISDDNARLPSFNGRVVSWLVS
SD
GETKVIYHLDEEETPWLVKIPVPAERITLGDFKSVLQRPAGAKYFFKSMDQDFGVVKEEISDDNARLPSFNGRVVSWLVS
SD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
82
DVL2
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.72
54.79
VAPOR DIFFUSION, SITTING DROP
8.0
20% (w/v) PEG 6000, Tris-HCl pH 8.0, 200 mM lithium chloride
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2019-02-20
1
1
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Japan
23121526
Japan
25121731
N
PDBJ
Y
PDBJ
2018-12-04
REL
REL
HOH
water
4WIP
PDB
experimental model
HOH
59
2
HOH
HOH
101
A
HOH
52
2
HOH
HOH
102
A
HOH
49
2
HOH
HOH
103
A
HOH
35
2
HOH
HOH
104
A
HOH
36
2
HOH
HOH
105
A
HOH
37
2
HOH
HOH
106
A
HOH
26
2
HOH
HOH
107
A
HOH
13
2
HOH
HOH
108
A
HOH
18
2
HOH
HOH
109
A
HOH
47
2
HOH
HOH
110
A
HOH
31
2
HOH
HOH
111
A
HOH
20
2
HOH
HOH
112
A
HOH
25
2
HOH
HOH
113
A
HOH
21
2
HOH
HOH
114
A
HOH
43
2
HOH
HOH
115
A
HOH
19
2
HOH
HOH
116
A
HOH
38
2
HOH
HOH
117
A
HOH
42
2
HOH
HOH
118
A
HOH
11
2
HOH
HOH
119
A
HOH
1
2
HOH
HOH
120
A
HOH
3
2
HOH
HOH
121
A
HOH
2
2
HOH
HOH
122
A
HOH
7
2
HOH
HOH
123
A
HOH
27
2
HOH
HOH
124
A
HOH
12
2
HOH
HOH
125
A
HOH
4
2
HOH
HOH
126
A
HOH
9
2
HOH
HOH
127
A
HOH
28
2
HOH
HOH
128
A
HOH
22
2
HOH
HOH
129
A
HOH
8
2
HOH
HOH
130
A
HOH
44
2
HOH
HOH
131
A
HOH
6
2
HOH
HOH
132
A
HOH
33
2
HOH
HOH
133
A
HOH
30
2
HOH
HOH
134
A
HOH
41
2
HOH
HOH
135
A
HOH
17
2
HOH
HOH
136
A
HOH
40
2
HOH
HOH
137
A
HOH
56
2
HOH
HOH
138
A
HOH
10
2
HOH
HOH
139
A
HOH
29
2
HOH
HOH
140
A
HOH
15
2
HOH
HOH
141
A
HOH
55
2
HOH
HOH
142
A
HOH
5
2
HOH
HOH
143
A
HOH
34
2
HOH
HOH
144
A
HOH
45
2
HOH
HOH
145
A
HOH
16
2
HOH
HOH
146
A
HOH
14
2
HOH
HOH
147
A
HOH
46
2
HOH
HOH
148
A
HOH
23
2
HOH
HOH
149
A
HOH
53
2
HOH
HOH
150
A
HOH
48
2
HOH
HOH
151
A
HOH
57
2
HOH
HOH
152
A
HOH
32
2
HOH
HOH
153
A
HOH
58
2
HOH
HOH
154
A
HOH
51
2
HOH
HOH
155
A
HOH
39
2
HOH
HOH
156
A
HOH
54
2
HOH
HOH
157
A
HOH
24
2
HOH
HOH
158
A
HOH
50
2
HOH
HOH
159
A
GLY
12
n
1
GLY
12
A
GLU
13
n
2
GLU
13
A
THR
14
n
3
THR
14
A
LYS
15
n
4
LYS
15
A
VAL
16
n
5
VAL
16
A
ILE
17
n
6
ILE
17
A
TYR
18
n
7
TYR
18
A
HIS
19
n
8
HIS
19
A
LEU
20
n
9
LEU
20
A
ASP
21
n
10
ASP
21
A
GLU
22
n
11
GLU
22
A
GLU
23
n
12
GLU
23
A
GLU
24
n
13
GLU
24
A
THR
25
n
14
THR
25
A
PRO
26
n
15
PRO
26
A
TRP
27
n
16
TRP
27
A
LEU
28
n
17
LEU
28
A
VAL
29
n
18
VAL
29
A
LYS
30
n
19
LYS
30
A
ILE
31
n
20
ILE
31
A
PRO
32
n
21
PRO
32
A
VAL
33
n
22
VAL
33
A
PRO
34
n
23
PRO
34
A
ALA
35
n
24
ALA
35
A
GLU
36
n
25
GLU
36
A
ARG
37
n
26
ARG
37
A
ILE
38
n
27
ILE
38
A
THR
39
n
28
THR
39
A
LEU
40
n
29
LEU
40
A
GLY
41
n
30
GLY
41
A
ASP
42
n
31
ASP
42
A
PHE
43
n
32
PHE
43
A
LYS
44
n
33
LYS
44
A
SER
45
n
34
SER
45
A
VAL
46
n
35
VAL
46
A
LEU
47
n
36
LEU
47
A
GLN
48
n
37
GLN
48
A
ARG
49
n
38
ARG
49
A
PRO
50
n
39
PRO
50
A
ALA
51
n
40
ALA
51
A
GLY
52
n
41
GLY
52
A
ALA
53
n
42
ALA
53
A
LYS
54
n
43
LYS
54
A
TYR
55
n
44
TYR
55
A
PHE
56
n
45
PHE
56
A
PHE
57
n
46
PHE
57
A
LYS
58
n
47
LYS
58
A
SER
59
n
48
SER
59
A
MET
60
n
49
MET
60
A
ASP
61
n
50
ASP
61
A
GLN
62
n
51
GLN
62
A
ASP
63
n
52
ASP
63
A
PHE
64
n
53
PHE
64
A
GLY
65
n
54
GLY
65
A
VAL
66
n
55
VAL
66
A
VAL
67
n
56
VAL
67
A
LYS
68
n
57
LYS
68
A
GLU
69
n
58
GLU
69
A
GLU
70
n
59
GLU
70
A
ILE
71
n
60
ILE
71
A
SER
72
n
61
SER
72
A
ASP
73
n
62
ASP
73
A
ASP
74
n
63
ASP
74
A
ASN
75
n
64
ASN
75
A
ALA
76
n
65
ALA
76
A
ARG
77
n
66
ARG
77
A
LEU
78
n
67
LEU
78
A
PRO
79
n
68
PRO
79
A
SER
80
n
69
SER
80
A
PHE
81
n
70
PHE
81
A
ASN
82
n
71
ASN
82
A
GLY
83
n
72
GLY
83
A
ARG
84
n
73
ARG
84
A
VAL
85
n
74
VAL
85
A
VAL
86
n
75
VAL
86
A
SER
87
n
76
SER
87
A
TRP
88
n
77
TRP
88
A
LEU
89
n
78
LEU
89
A
VAL
90
n
79
VAL
90
A
SER
91
n
80
SER
91
A
SER
92
n
81
SER
92
A
n
82
93
A
2.84264895506
-3.20503597624
-3.983446944
7.68302405556
1.98232857476
8.2144762248
-0.595981172019
-0.163996168757
-0.0846871715018
0.157500084818
0.27216118599
0.104673916033
0.528628646407
0.263661033632
0.254247184477
0.249825695288
-0.0171944583839
-0.0419763646493
0.185124006109
-0.0174849265316
0.296868766857
refined
17.3530849236
-7.94466434839
-8.36713959816
X-RAY DIFFRACTION
1.75866822969
-2.21594372353
0.210214807775
3.71597544147
0.968294577646
3.50409113727
-0.328632961394
0.214769115777
0.169261870786
1.08367068993
-0.393392737728
1.96450988538
-0.354128857836
-1.40304088952
0.697695728258
0.40366572842
-0.0543107776199
0.0578601657956
0.420672038531
-0.121396973341
0.555099345953
refined
4.33478631966
-4.6848182001
-6.41530266024
X-RAY DIFFRACTION
2.17289427318
-0.829334333123
-3.00263621829
7.04126980239
-0.464707127235
8.16582452834
0.0602908075024
0.277717523177
-0.506647996477
-0.315927551969
-0.0405384184662
0.364375438716
0.456182881725
0.480771329963
-0.0432394890877
0.253103391425
0.0223144426462
-0.0514306460867
0.208255170669
-0.0420764323048
0.247634019266
refined
16.2914834334
-9.80716839682
-11.800368423
X-RAY DIFFRACTION
1.12417576904
-1.16218428296
1.90107066564
6.54096317695
0.57731715409
4.43707972687
-0.3989036771
0.944607393321
0.0512013017117
0.302658889475
0.406111411467
-1.36425119605
0.3384850564
1.29039610712
-0.176287020382
0.229420904225
0.0247937274759
0.0296160031054
0.530244324935
-0.0159155097624
0.335402464151
refined
29.4557855589
-5.65733753363
-8.98947289237
X-RAY DIFFRACTION
2.47726180567
2.83046258679
1.29598898033
8.82137792501
1.88155627978
1.67093928677
-0.500312361582
1.02838471001
-0.172121761381
-0.947787309333
0.422023934169
-0.11912274144
0.00518829979237
0.710402761798
0.0921066131933
0.373356174342
-0.0469217547509
0.00495711446921
0.311535787743
0.017254499002
0.242871959961
refined
21.4664949269
-0.241089228526
-13.6622328525
X-RAY DIFFRACTION
8.34319228295
1.98681070334
3.13402068746
2.18934937485
2.75689672746
4.8616082654
-0.526412146376
1.22785299168
0.271976185815
-1.45736729423
1.19403900376
0.896318290886
-1.44505388664
-1.5287776367
-0.525837620978
0.690580004371
-0.155812492314
-0.0584947148141
0.668142076107
0.126250526303
0.550462591132
refined
13.3928108889
2.75578847039
-16.9997601974
X-RAY DIFFRACTION
5.06568458977
-2.39562927098
-2.20095096857
3.60078157223
0.857370627422
2.17356270148
-0.308452544619
-0.581160724669
0.214287705701
0.849075740128
0.296072945473
-0.115141232877
-1.14331034974
0.429611356621
0.0550053285887
0.465271291993
0.0107772618767
-0.0391563705317
0.22688218533
0.0131416087674
0.24781305737
refined
17.9205354187
2.42315850891
3.64471572346
X-RAY DIFFRACTION
4.55632043468
-0.249960055783
0.820697090963
2.61266942498
-0.731555305344
5.08792839049
-0.207881619253
0.0912481776845
0.277434308135
-0.271958982161
0.133853521817
-0.56105812008
-0.281295545125
0.452374886971
0.0779083302598
0.232956317406
-0.0341952179406
-0.0403496666894
0.226339439553
0.00324386767114
0.228928050475
refined
24.9714091957
-0.24107426705
-4.4972726085
X-RAY DIFFRACTION
4.26216757506
-2.76677305867
1.69691614855
2.10254255239
-1.22618733982
7.12136697534
0.0106159236901
0.55675823327
-0.233142751502
-0.465726713347
-0.155088184548
0.433585746272
-0.156698767545
-0.0151911855403
-0.00937166862004
0.224668143785
-0.000118980167237
-0.0466387844877
0.154792013921
-0.0070750816695
0.275740490672
refined
13.5274489199
-1.38133905726
-5.24727908033
X-RAY DIFFRACTION
A
12
A
20
X-RAY DIFFRACTION
1
chain 'A' and (resid 12 through 20 )
A
21
A
26
X-RAY DIFFRACTION
2
chain 'A' and (resid 21 through 26 )
A
27
A
31
X-RAY DIFFRACTION
3
chain 'A' and (resid 27 through 31 )
A
32
A
39
X-RAY DIFFRACTION
4
chain 'A' and (resid 32 through 39 )
A
40
A
46
X-RAY DIFFRACTION
5
chain 'A' and (resid 40 through 46 )
A
47
A
53
X-RAY DIFFRACTION
6
chain 'A' and (resid 47 through 53 )
A
54
A
70
X-RAY DIFFRACTION
7
chain 'A' and (resid 54 through 70 )
A
71
A
83
X-RAY DIFFRACTION
8
chain 'A' and (resid 71 through 83 )
A
84
A
92
X-RAY DIFFRACTION
9
chain 'A' and (resid 84 through 92 )
author_defined_assembly
6
hexameric
none
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
29.2166666667
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
58.4333333333
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
-x,-y,z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
43.8250000000
0.5000000000
0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
5_555
y,-x+y,z+5/6
crystal symmetry operation
0.0000000000
0.0000000000
73.0416666667
0.5000000000
-0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_555
x-y,x,z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
14.6083333333
A
O
TRP
27
A
O
TRP
16
A
N
TYR
18
A
N
TYR
7
A
N
LYS
15
A
N
LYS
4
A
O
VAL
85
A
O
VAL
74
A
O
VAL
86
A
O
VAL
75
A
N
LYS
58
A
N
LYS
47
A
N
SER
59
A
N
SER
48
A
O
VAL
67
A
O
VAL
56
1
A
ASP
93
A
ASP
82
1
Y
1
A
ASP
21
46.07
-126.28
0.2292
0.1998
0.2026
1.64
38.5
1216
12118
10.03
99.88
0.116
1
FREE R-VALUE
MOLECULAR REPLACEMENT
4WIP
1.64
38.5
59
708
0
0
649
0.3308
0.3174
1.702
135
1204
100
36.0
1.64
50
6IW3
12127
0.999
0.133
0.136
1
20.3
19.7
100
2.30
1.64
1.68
873
0.511
2.37
1
13.9
100
refinement
PHENIX
1.8.2_1309
data reduction
XDS
data scaling
XDS
phasing
PHASER
169
hexagonal
P 61
P 61
x,y,z
x-y,x,z+1/6
y,-x+y,z+5/6
-y,x-y,z+1/3
-x+y,-x,z+2/3
-x,-y,z+1/2
N
High resolution structure of Dvl2-DIX Y27W/C80S mutant
1
N
N
2
N
N
A
THR
39
A
THR
28
HELX_P
A
SER
45
A
SER
34
1
AA1
7
SIGNALING PROTEIN
Wnt signalling, SIGNALING PROTEIN
DVL2_HUMAN
UNP
1
12
O14641
GETKVIYHLDEEETPYLVKIPVPAERITLGDFKSVLQRPAGAKYFFKSMDQDFGVVKEEISDDNARLPCFNGRVVSWLVS
SD
12
93
6IW3
12
93
O14641
A
1
1
82
1
TYR
engineered mutation
TRP
27
6IW3
A
O14641
UNP
27
16
1
CYS
engineered mutation
SER
80
6IW3
A
O14641
UNP
80
69
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
TRP
27
A
TRP
16
A
ILE
31
A
ILE
20
A
THR
14
A
THR
3
A
LEU
20
A
LEU
9
A
ARG
84
A
ARG
73
A
VAL
90
A
VAL
79
A
LYS
54
A
LYS
43
A
ASP
61
A
ASP
50
A
GLY
65
A
GLY
54
A
GLU
70
A
GLU
59
169
P 61
P 61