0.018579
0.000000
0.000000
0.000000
0.012232
0.000000
0.000000
0.000000
0.009378
0.00000
0.00000
0.00000
Yamamoto, Y.
Morita, D.
Sugita, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
53.823
81.756
106.635
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
B H3 O3
61.833
BORIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C14 H28 O2
228.371
MYRISTIC ACID
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
B
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
Y
163
N
N
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
S
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
S
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
C
N
268
N
O
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
NA
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
US
J Immunol.
1550-6606
202
3349
3358
10.4049/jimmunol.1900087
31043477
Identification and Structure of an MHC Class I-Encoded Protein with the Potential to PresentN-Myristoylated 4-mer Peptides to T Cells.
2019
0000-0002-7011-0745
0000-0002-5176-2561
0000-0002-5024-0614
10.2210/pdb6iwg/pdb
pdb_00006iwg
100
1
N
CCD
2016-04-15
RAYONIX MX225HE
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL26B1
SPring-8
1.0
SYNCHROTRON
SPRING-8 BEAMLINE BL26B1
31919.098
MHC class I antigen
R128E,K177E,D223E,K264E
1
man
polymer
11731.157
Beta-2-microglobulin
1
man
polymer
526.710
N-myristoylated 4-mer lipopeptide
1
syn
polymer
22.990
SODIUM ION
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
18
syn
non-polymer
61.833
BORIC ACID
3
syn
non-polymer
18.015
water
304
nat
water
Major histocompatibility complex class I,MHC-class I protein
no
no
GSHSLRYFGTAVSRPGRGEPRFIYVGYVDDTQFVRFDSDAASPRTEPRAPWVEQEGPEYWEEETRRAKARAQTDRADLRT
LRGYYNQSEAGSHTLQWMAGCDLGPNGRLLRGYHQSAYDGKDYIALNEDLRSWIAADMAAQNTQRKWEATRYAERFRAYL
EGPCLEWLRRYLENGKETLQHADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEEQTQDIEFVETRPAGDGT
FQKWGAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
GSHSLRYFGTAVSRPGRGEPRFIYVGYVDDTQFVRFDSDAASPRTEPRAPWVEQEGPEYWEEETRRAKARAQTDRADLRT
LRGYYNQSEAGSHTLQWMAGCDLGPNGRLLRGYHQSAYDGKDYIALNEDLRSWIAADMAAQNTQRKWEATRYAERFRAYL
EGPCLEWLRRYLENGKETLQHADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEEQTQDIEFVETRPAGDGT
FQKWGAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
A
polypeptide(L)
no
no
AIQRTPKIQVYSRHPPENGKPNFLNCYVSGFHPSDIEVDLLKNGEKMGKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYA
CRVNHVTLSGPRTVKWDRDM
AIQRTPKIQVYSRHPPENGKPNFLNCYVSGFHPSDIEVDLLKNGEKMGKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYA
CRVNHVTLSGPRTVKWDRDM
B
polypeptide(L)
no
yes
(MYR)GGAI
XGGAI
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhesus macaque
sample
1
276
Mamu-B*05104
9544
Macaca mulatta
469008
Escherichia coli BL21(DE3)
Rosetta2
Biological sequence
Rhesus macaque
sample
1
100
B2M
9544
Macaca mulatta
469008
Escherichia coli BL21(DE3)
Rosetta2
Biological sequence
1
2.66
53.68
VAPOR DIFFUSION, SITTING DROP
7.0
100mM MIB, 25% PEG 1500
277.1500
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2019-08-14
1
1
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
Japan
Japan Society for the Promotion of Science
16K19151
Japan
Japan Society for the Promotion of Science
15J04072
Japan
Japan Agency for Medical Research and Development (AMED)
16K15517
Japan
Japan Society for the Promotion of Science
17H05791
N
PDBJ
Y
PDBJ
2018-12-05
REL
REL
MYR
MYR
SUBJECT OF INVESTIGATION
NA
SODIUM ION
EDO
1,2-ETHANEDIOL
BO3
BORIC ACID
HOH
water
11723
Simian immunodeficiency virus
sample
1
5
4ZFZ
PDB
experimental model
NA
301
4
NA
NA
301
A
NA
302
4
NA
NA
302
A
NA
303
4
NA
NA
303
A
EDO
304
5
EDO
EDO
304
A
EDO
305
5
EDO
EDO
305
A
EDO
306
5
EDO
EDO
306
A
EDO
307
5
EDO
EDO
307
A
EDO
308
5
EDO
EDO
308
A
EDO
309
5
EDO
EDO
309
A
EDO
310
5
EDO
EDO
310
A
EDO
311
5
EDO
EDO
311
A
EDO
312
5
EDO
EDO
312
A
EDO
313
5
EDO
EDO
313
A
BO3
314
6
BO3
BO3
314
A
NA
101
4
NA
NA
101
B
EDO
102
5
EDO
EDO
102
B
EDO
103
5
EDO
EDO
103
B
EDO
104
5
EDO
EDO
104
B
EDO
105
5
EDO
EDO
105
B
EDO
106
5
EDO
EDO
106
B
EDO
107
5
EDO
EDO
107
B
EDO
108
5
EDO
EDO
108
B
EDO
109
5
EDO
EDO
109
B
BO3
110
6
BO3
BO3
110
B
BO3
111
6
BO3
BO3
111
B
HOH
401
7
HOH
HOH
401
A
HOH
402
7
HOH
HOH
402
A
HOH
403
7
HOH
HOH
403
A
HOH
404
7
HOH
HOH
404
A
HOH
405
7
HOH
HOH
405
A
HOH
406
7
HOH
HOH
406
A
HOH
407
7
HOH
HOH
407
A
HOH
408
7
HOH
HOH
408
A
HOH
409
7
HOH
HOH
409
A
HOH
410
7
HOH
HOH
410
A
HOH
411
7
HOH
HOH
411
A
HOH
412
7
HOH
HOH
412
A
HOH
413
7
HOH
HOH
413
A
HOH
414
7
HOH
HOH
414
A
HOH
415
7
HOH
HOH
415
A
HOH
416
7
HOH
HOH
416
A
HOH
417
7
HOH
HOH
417
A
HOH
418
7
HOH
HOH
418
A
HOH
419
7
HOH
HOH
419
A
HOH
420
7
HOH
HOH
420
A
HOH
421
7
HOH
HOH
421
A
HOH
422
7
HOH
HOH
422
A
HOH
423
7
HOH
HOH
423
A
HOH
424
7
HOH
HOH
424
A
HOH
425
7
HOH
HOH
425
A
HOH
426
7
HOH
HOH
426
A
HOH
427
7
HOH
HOH
427
A
HOH
428
7
HOH
HOH
428
A
HOH
429
7
HOH
HOH
429
A
HOH
430
7
HOH
HOH
430
A
HOH
431
7
HOH
HOH
431
A
HOH
432
7
HOH
HOH
432
A
HOH
433
7
HOH
HOH
433
A
HOH
434
7
HOH
HOH
434
A
HOH
435
7
HOH
HOH
435
A
HOH
436
7
HOH
HOH
436
A
HOH
437
7
HOH
HOH
437
A
HOH
438
7
HOH
HOH
438
A
HOH
439
7
HOH
HOH
439
A
HOH
440
7
HOH
HOH
440
A
HOH
441
7
HOH
HOH
441
A
HOH
442
7
HOH
HOH
442
A
HOH
443
7
HOH
HOH
443
A
HOH
444
7
HOH
HOH
444
A
HOH
445
7
HOH
HOH
445
A
HOH
446
7
HOH
HOH
446
A
HOH
447
7
HOH
HOH
447
A
HOH
448
7
HOH
HOH
448
A
HOH
449
7
HOH
HOH
449
A
HOH
450
7
HOH
HOH
450
A
HOH
451
7
HOH
HOH
451
A
HOH
452
7
HOH
HOH
452
A
HOH
453
7
HOH
HOH
453
A
HOH
454
7
HOH
HOH
454
A
HOH
455
7
HOH
HOH
455
A
HOH
456
7
HOH
HOH
456
A
HOH
457
7
HOH
HOH
457
A
HOH
458
7
HOH
HOH
458
A
HOH
459
7
HOH
HOH
459
A
HOH
460
7
HOH
HOH
460
A
HOH
461
7
HOH
HOH
461
A
HOH
462
7
HOH
HOH
462
A
HOH
463
7
HOH
HOH
463
A
HOH
464
7
HOH
HOH
464
A
HOH
465
7
HOH
HOH
465
A
HOH
466
7
HOH
HOH
466
A
HOH
467
7
HOH
HOH
467
A
HOH
468
7
HOH
HOH
468
A
HOH
469
7
HOH
HOH
469
A
HOH
470
7
HOH
HOH
470
A
HOH
471
7
HOH
HOH
471
A
HOH
472
7
HOH
HOH
472
A
HOH
473
7
HOH
HOH
473
A
HOH
474
7
HOH
HOH
474
A
HOH
475
7
HOH
HOH
475
A
HOH
476
7
HOH
HOH
476
A
HOH
477
7
HOH
HOH
477
A
HOH
478
7
HOH
HOH
478
A
HOH
479
7
HOH
HOH
479
A
HOH
480
7
HOH
HOH
480
A
HOH
481
7
HOH
HOH
481
A
HOH
482
7
HOH
HOH
482
A
HOH
483
7
HOH
HOH
483
A
HOH
484
7
HOH
HOH
484
A
HOH
485
7
HOH
HOH
485
A
HOH
486
7
HOH
HOH
486
A
HOH
487
7
HOH
HOH
487
A
HOH
488
7
HOH
HOH
488
A
HOH
489
7
HOH
HOH
489
A
HOH
490
7
HOH
HOH
490
A
HOH
491
7
HOH
HOH
491
A
HOH
492
7
HOH
HOH
492
A
HOH
493
7
HOH
HOH
493
A
HOH
494
7
HOH
HOH
494
A
HOH
495
7
HOH
HOH
495
A
HOH
496
7
HOH
HOH
496
A
HOH
497
7
HOH
HOH
497
A
HOH
498
7
HOH
HOH
498
A
HOH
499
7
HOH
HOH
499
A
HOH
500
7
HOH
HOH
500
A
HOH
501
7
HOH
HOH
501
A
HOH
502
7
HOH
HOH
502
A
HOH
503
7
HOH
HOH
503
A
HOH
504
7
HOH
HOH
504
A
HOH
505
7
HOH
HOH
505
A
HOH
506
7
HOH
HOH
506
A
HOH
507
7
HOH
HOH
507
A
HOH
508
7
HOH
HOH
508
A
HOH
509
7
HOH
HOH
509
A
HOH
510
7
HOH
HOH
510
A
HOH
511
7
HOH
HOH
511
A
HOH
512
7
HOH
HOH
512
A
HOH
513
7
HOH
HOH
513
A
HOH
514
7
HOH
HOH
514
A
HOH
515
7
HOH
HOH
515
A
HOH
516
7
HOH
HOH
516
A
HOH
517
7
HOH
HOH
517
A
HOH
518
7
HOH
HOH
518
A
HOH
519
7
HOH
HOH
519
A
HOH
520
7
HOH
HOH
520
A
HOH
521
7
HOH
HOH
521
A
HOH
522
7
HOH
HOH
522
A
HOH
523
7
HOH
HOH
523
A
HOH
524
7
HOH
HOH
524
A
HOH
525
7
HOH
HOH
525
A
HOH
526
7
HOH
HOH
526
A
HOH
527
7
HOH
HOH
527
A
HOH
528
7
HOH
HOH
528
A
HOH
529
7
HOH
HOH
529
A
HOH
530
7
HOH
HOH
530
A
HOH
531
7
HOH
HOH
531
A
HOH
532
7
HOH
HOH
532
A
HOH
533
7
HOH
HOH
533
A
HOH
534
7
HOH
HOH
534
A
HOH
535
7
HOH
HOH
535
A
HOH
536
7
HOH
HOH
536
A
HOH
537
7
HOH
HOH
537
A
HOH
538
7
HOH
HOH
538
A
HOH
539
7
HOH
HOH
539
A
HOH
540
7
HOH
HOH
540
A
HOH
541
7
HOH
HOH
541
A
HOH
542
7
HOH
HOH
542
A
HOH
543
7
HOH
HOH
543
A
HOH
544
7
HOH
HOH
544
A
HOH
545
7
HOH
HOH
545
A
HOH
546
7
HOH
HOH
546
A
HOH
547
7
HOH
HOH
547
A
HOH
548
7
HOH
HOH
548
A
HOH
549
7
HOH
HOH
549
A
HOH
550
7
HOH
HOH
550
A
HOH
551
7
HOH
HOH
551
A
HOH
552
7
HOH
HOH
552
A
HOH
553
7
HOH
HOH
553
A
HOH
554
7
HOH
HOH
554
A
HOH
555
7
HOH
HOH
555
A
HOH
556
7
HOH
HOH
556
A
HOH
557
7
HOH
HOH
557
A
HOH
558
7
HOH
HOH
558
A
HOH
559
7
HOH
HOH
559
A
HOH
560
7
HOH
HOH
560
A
HOH
561
7
HOH
HOH
561
A
HOH
562
7
HOH
HOH
562
A
HOH
563
7
HOH
HOH
563
A
HOH
564
7
HOH
HOH
564
A
HOH
565
7
HOH
HOH
565
A
HOH
566
7
HOH
HOH
566
A
HOH
567
7
HOH
HOH
567
A
HOH
568
7
HOH
HOH
568
A
HOH
569
7
HOH
HOH
569
A
HOH
570
7
HOH
HOH
570
A
HOH
571
7
HOH
HOH
571
A
HOH
572
7
HOH
HOH
572
A
HOH
573
7
HOH
HOH
573
A
HOH
574
7
HOH
HOH
574
A
HOH
575
7
HOH
HOH
575
A
HOH
576
7
HOH
HOH
576
A
HOH
577
7
HOH
HOH
577
A
HOH
578
7
HOH
HOH
578
A
HOH
579
7
HOH
HOH
579
A
HOH
580
7
HOH
HOH
580
A
HOH
581
7
HOH
HOH
581
A
HOH
582
7
HOH
HOH
582
A
HOH
583
7
HOH
HOH
583
A
HOH
584
7
HOH
HOH
584
A
HOH
585
7
HOH
HOH
585
A
HOH
586
7
HOH
HOH
586
A
HOH
587
7
HOH
HOH
587
A
HOH
588
7
HOH
HOH
588
A
HOH
589
7
HOH
HOH
589
A
HOH
590
7
HOH
HOH
590
A
HOH
591
7
HOH
HOH
591
A
HOH
592
7
HOH
HOH
592
A
HOH
593
7
HOH
HOH
593
A
HOH
594
7
HOH
HOH
594
A
HOH
595
7
HOH
HOH
595
A
HOH
596
7
HOH
HOH
596
A
HOH
597
7
HOH
HOH
597
A
HOH
598
7
HOH
HOH
598
A
HOH
599
7
HOH
HOH
599
A
HOH
600
7
HOH
HOH
600
A
HOH
601
7
HOH
HOH
601
A
HOH
602
7
HOH
HOH
602
A
HOH
603
7
HOH
HOH
603
A
HOH
201
7
HOH
HOH
201
B
HOH
202
7
HOH
HOH
202
B
HOH
203
7
HOH
HOH
203
B
HOH
204
7
HOH
HOH
204
B
HOH
205
7
HOH
HOH
205
B
HOH
206
7
HOH
HOH
206
B
HOH
207
7
HOH
HOH
207
B
HOH
208
7
HOH
HOH
208
B
HOH
209
7
HOH
HOH
209
B
HOH
210
7
HOH
HOH
210
B
HOH
211
7
HOH
HOH
211
B
HOH
212
7
HOH
HOH
212
B
HOH
213
7
HOH
HOH
213
B
HOH
214
7
HOH
HOH
214
B
HOH
215
7
HOH
HOH
215
B
HOH
216
7
HOH
HOH
216
B
HOH
217
7
HOH
HOH
217
B
HOH
218
7
HOH
HOH
218
B
HOH
219
7
HOH
HOH
219
B
HOH
220
7
HOH
HOH
220
B
HOH
221
7
HOH
HOH
221
B
HOH
222
7
HOH
HOH
222
B
HOH
223
7
HOH
HOH
223
B
HOH
224
7
HOH
HOH
224
B
HOH
225
7
HOH
HOH
225
B
HOH
226
7
HOH
HOH
226
B
HOH
227
7
HOH
HOH
227
B
HOH
228
7
HOH
HOH
228
B
HOH
229
7
HOH
HOH
229
B
HOH
230
7
HOH
HOH
230
B
HOH
231
7
HOH
HOH
231
B
HOH
232
7
HOH
HOH
232
B
HOH
233
7
HOH
HOH
233
B
HOH
234
7
HOH
HOH
234
B
HOH
235
7
HOH
HOH
235
B
HOH
236
7
HOH
HOH
236
B
HOH
237
7
HOH
HOH
237
B
HOH
238
7
HOH
HOH
238
B
HOH
239
7
HOH
HOH
239
B
HOH
240
7
HOH
HOH
240
B
HOH
241
7
HOH
HOH
241
B
HOH
242
7
HOH
HOH
242
B
HOH
243
7
HOH
HOH
243
B
HOH
244
7
HOH
HOH
244
B
HOH
245
7
HOH
HOH
245
B
HOH
246
7
HOH
HOH
246
B
HOH
247
7
HOH
HOH
247
B
HOH
248
7
HOH
HOH
248
B
HOH
249
7
HOH
HOH
249
B
HOH
250
7
HOH
HOH
250
B
HOH
251
7
HOH
HOH
251
B
HOH
252
7
HOH
HOH
252
B
HOH
253
7
HOH
HOH
253
B
HOH
254
7
HOH
HOH
254
B
HOH
255
7
HOH
HOH
255
B
HOH
256
7
HOH
HOH
256
B
HOH
257
7
HOH
HOH
257
B
HOH
258
7
HOH
HOH
258
B
HOH
259
7
HOH
HOH
259
B
HOH
260
7
HOH
HOH
260
B
HOH
261
7
HOH
HOH
261
B
HOH
262
7
HOH
HOH
262
B
HOH
263
7
HOH
HOH
263
B
HOH
264
7
HOH
HOH
264
B
HOH
265
7
HOH
HOH
265
B
HOH
266
7
HOH
HOH
266
B
HOH
267
7
HOH
HOH
267
B
HOH
268
7
HOH
HOH
268
B
HOH
269
7
HOH
HOH
269
B
HOH
270
7
HOH
HOH
270
B
HOH
271
7
HOH
HOH
271
B
HOH
272
7
HOH
HOH
272
B
HOH
273
7
HOH
HOH
273
B
HOH
274
7
HOH
HOH
274
B
HOH
275
7
HOH
HOH
275
B
HOH
276
7
HOH
HOH
276
B
HOH
277
7
HOH
HOH
277
B
HOH
278
7
HOH
HOH
278
B
HOH
279
7
HOH
HOH
279
B
HOH
280
7
HOH
HOH
280
B
HOH
281
7
HOH
HOH
281
B
HOH
282
7
HOH
HOH
282
B
HOH
283
7
HOH
HOH
283
B
HOH
284
7
HOH
HOH
284
B
HOH
285
7
HOH
HOH
285
B
HOH
286
7
HOH
HOH
286
B
HOH
287
7
HOH
HOH
287
B
HOH
288
7
HOH
HOH
288
B
HOH
289
7
HOH
HOH
289
B
HOH
290
7
HOH
HOH
290
B
HOH
291
7
HOH
HOH
291
B
HOH
292
7
HOH
HOH
292
B
HOH
293
7
HOH
HOH
293
B
HOH
294
7
HOH
HOH
294
B
HOH
295
7
HOH
HOH
295
B
HOH
296
7
HOH
HOH
296
B
HOH
297
7
HOH
HOH
297
B
HOH
298
7
HOH
HOH
298
B
HOH
299
7
HOH
HOH
299
B
HOH
101
7
HOH
HOH
101
C
HOH
102
7
HOH
HOH
102
C
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
LEU
5
n
5
LEU
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
GLY
9
n
9
GLY
9
A
THR
10
n
10
THR
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
ARG
17
n
17
ARG
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
PHE
22
n
22
PHE
22
A
ILE
23
n
23
ILE
23
A
TYR
24
n
24
TYR
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
GLN
32
n
32
GLN
32
A
PHE
33
n
33
PHE
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
SER
42
n
42
SER
42
A
PRO
43
n
43
PRO
43
A
ARG
44
n
44
ARG
44
A
THR
45
n
45
THR
45
A
GLU
46
n
46
GLU
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
ALA
49
n
49
ALA
49
A
PRO
50
n
50
PRO
50
A
TRP
51
n
51
TRP
51
A
VAL
52
n
52
VAL
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
TYR
59
n
59
TYR
59
A
TRP
60
n
60
TRP
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
THR
64
n
64
THR
64
A
ARG
65
n
65
ARG
65
A
ARG
66
n
66
ARG
66
A
ALA
67
n
67
ALA
67
A
LYS
68
n
68
LYS
68
A
ALA
69
n
69
ALA
69
A
ARG
70
n
70
ARG
70
A
ALA
71
n
71
ALA
71
A
GLN
72
n
72
GLN
72
A
THR
73
n
73
THR
73
A
ASP
74
n
74
ASP
74
A
ARG
75
n
75
ARG
75
A
ALA
76
n
76
ALA
76
A
ASP
77
n
77
ASP
77
A
LEU
78
n
78
LEU
78
A
ARG
79
n
79
ARG
79
A
THR
80
n
80
THR
80
A
LEU
81
n
81
LEU
81
A
ARG
82
n
82
ARG
82
A
GLY
83
n
83
GLY
83
A
TYR
84
n
84
TYR
84
A
TYR
85
n
85
TYR
85
A
ASN
86
n
86
ASN
86
A
GLN
87
n
87
GLN
87
A
SER
88
n
88
SER
88
A
GLU
89
n
89
GLU
89
A
ALA
90
n
90
ALA
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
GLN
96
n
96
GLN
96
A
TRP
97
n
97
TRP
97
A
MET
98
n
98
MET
98
A
ALA
99
n
99
ALA
99
A
GLY
100
n
100
GLY
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
PRO
105
n
105
PRO
105
A
ASN
106
n
106
ASN
106
A
GLY
107
n
107
GLY
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
TYR
113
n
113
TYR
113
A
HIS
114
n
114
HIS
114
A
GLN
115
n
115
GLN
115
A
SER
116
n
116
SER
116
A
ALA
117
n
117
ALA
117
A
TYR
118
n
118
TYR
118
A
ASP
119
n
119
ASP
119
A
GLY
120
n
120
GLY
120
A
LYS
121
n
121
LYS
121
A
ASP
122
n
122
ASP
122
A
TYR
123
n
123
TYR
123
A
ILE
124
n
124
ILE
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
ASN
127
n
127
ASN
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
ARG
131
n
131
ARG
131
A
SER
132
n
132
SER
132
A
TRP
133
n
133
TRP
133
A
ILE
134
n
134
ILE
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ASP
137
n
137
ASP
137
A
MET
138
n
138
MET
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
ASN
142
n
142
ASN
142
A
THR
143
n
143
THR
143
A
GLN
144
n
144
GLN
144
A
ARG
145
n
145
ARG
145
A
LYS
146
n
146
LYS
146
A
TRP
147
n
147
TRP
147
A
GLU
148
n
148
GLU
148
A
ALA
149
n
149
ALA
149
A
THR
150
n
150
THR
150
A
ARG
151
n
151
ARG
151
A
TYR
152
n
152
TYR
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
ARG
155
n
155
ARG
155
A
PHE
156
n
156
PHE
156
A
ARG
157
n
157
ARG
157
A
ALA
158
n
158
ALA
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
GLY
162
n
162
GLY
162
A
PRO
163
n
163
PRO
163
A
CYS
164
n
164
CYS
164
A
LEU
165
n
165
LEU
165
A
GLU
166
n
166
GLU
166
A
TRP
167
n
167
TRP
167
A
LEU
168
n
168
LEU
168
A
ARG
169
n
169
ARG
169
A
ARG
170
n
170
ARG
170
A
TYR
171
n
171
TYR
171
A
LEU
172
n
172
LEU
172
A
GLU
173
n
173
GLU
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
LYS
176
n
176
LYS
176
A
GLU
177
n
177
GLU
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
GLN
180
n
180
GLN
180
A
HIS
181
n
181
HIS
181
A
ALA
182
n
182
ALA
182
A
ASP
183
n
183
ASP
183
A
PRO
184
n
184
PRO
184
A
PRO
185
n
185
PRO
185
A
LYS
186
n
186
LYS
186
A
THR
187
n
187
THR
187
A
HIS
188
n
188
HIS
188
A
VAL
189
n
189
VAL
189
A
THR
190
n
190
THR
190
A
HIS
191
n
191
HIS
191
A
HIS
192
n
192
HIS
192
A
PRO
193
n
193
PRO
193
A
VAL
194
n
194
VAL
194
A
SER
195
n
195
SER
195
A
ASP
196
n
196
ASP
196
A
HIS
197
n
197
HIS
197
A
GLU
198
n
198
GLU
198
A
ALA
199
n
199
ALA
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ARG
202
n
202
ARG
202
A
CYS
203
n
203
CYS
203
A
TRP
204
n
204
TRP
204
A
ALA
205
n
205
ALA
205
A
LEU
206
n
206
LEU
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
TYR
209
n
209
TYR
209
A
PRO
210
n
210
PRO
210
A
ALA
211
n
211
ALA
211
A
GLU
212
n
212
GLU
212
A
ILE
213
n
213
ILE
213
A
THR
214
n
214
THR
214
A
LEU
215
n
215
LEU
215
A
THR
216
n
216
THR
216
A
TRP
217
n
217
TRP
217
A
GLN
218
n
218
GLN
218
A
ARG
219
n
219
ARG
219
A
ASP
220
n
220
ASP
220
A
GLY
221
n
221
GLY
221
A
GLU
222
n
222
GLU
222
A
GLU
223
n
223
GLU
223
A
GLN
224
n
224
GLN
224
A
THR
225
n
225
THR
225
A
GLN
226
n
226
GLN
226
A
ASP
227
n
227
ASP
227
A
ILE
228
n
228
ILE
228
A
GLU
229
n
229
GLU
229
A
PHE
230
n
230
PHE
230
A
VAL
231
n
231
VAL
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
GLY
239
n
239
GLY
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
GLN
242
n
242
GLN
242
A
LYS
243
n
243
LYS
243
A
TRP
244
n
244
TRP
244
A
GLY
245
n
245
GLY
245
A
ALA
246
n
246
ALA
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
PRO
250
n
250
PRO
250
A
SER
251
n
251
SER
251
A
GLY
252
n
252
GLY
252
A
GLU
253
n
253
GLU
253
A
GLU
254
n
254
GLU
254
A
GLN
255
n
255
GLN
255
A
ARG
256
n
256
ARG
256
A
TYR
257
n
257
TYR
257
A
THR
258
n
258
THR
258
A
CYS
259
n
259
CYS
259
A
HIS
260
n
260
HIS
260
A
VAL
261
n
261
VAL
261
A
GLN
262
n
262
GLN
262
A
HIS
263
n
263
HIS
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
GLU
268
n
268
GLU
268
A
PRO
269
n
269
PRO
269
A
LEU
270
n
270
LEU
270
A
THR
271
n
271
THR
271
A
LEU
272
n
272
LEU
272
A
ARG
273
n
273
ARG
273
A
TRP
274
n
274
TRP
274
A
GLU
275
n
275
GLU
275
A
PRO
276
n
276
PRO
276
A
ALA
0
n
1
ALA
0
B
ILE
1
n
2
ILE
1
B
GLN
2
n
3
GLN
2
B
ARG
3
n
4
ARG
3
B
THR
4
n
5
THR
4
B
PRO
5
n
6
PRO
5
B
LYS
6
n
7
LYS
6
B
ILE
7
n
8
ILE
7
B
GLN
8
n
9
GLN
8
B
VAL
9
n
10
VAL
9
B
TYR
10
n
11
TYR
10
B
SER
11
n
12
SER
11
B
ARG
12
n
13
ARG
12
B
HIS
13
n
14
HIS
13
B
PRO
14
n
15
PRO
14
B
PRO
15
n
16
PRO
15
B
GLU
16
n
17
GLU
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
LYS
19
n
20
LYS
19
B
PRO
20
n
21
PRO
20
B
ASN
21
n
22
ASN
21
B
PHE
22
n
23
PHE
22
B
LEU
23
n
24
LEU
23
B
ASN
24
n
25
ASN
24
B
CYS
25
n
26
CYS
25
B
TYR
26
n
27
TYR
26
B
VAL
27
n
28
VAL
27
B
SER
28
n
29
SER
28
B
GLY
29
n
30
GLY
29
B
PHE
30
n
31
PHE
30
B
HIS
31
n
32
HIS
31
B
PRO
32
n
33
PRO
32
B
SER
33
n
34
SER
33
B
ASP
34
n
35
ASP
34
B
ILE
35
n
36
ILE
35
B
GLU
36
n
37
GLU
36
B
VAL
37
n
38
VAL
37
B
ASP
38
n
39
ASP
38
B
LEU
39
n
40
LEU
39
B
LEU
40
n
41
LEU
40
B
LYS
41
n
42
LYS
41
B
ASN
42
n
43
ASN
42
B
GLY
43
n
44
GLY
43
B
GLU
44
n
45
GLU
44
B
LYS
45
n
46
LYS
45
B
MET
46
n
47
MET
46
B
GLY
47
n
48
GLY
47
B
LYS
48
n
49
LYS
48
B
VAL
49
n
50
VAL
49
B
GLU
50
n
51
GLU
50
B
HIS
51
n
52
HIS
51
B
SER
52
n
53
SER
52
B
ASP
53
n
54
ASP
53
B
LEU
54
n
55
LEU
54
B
SER
55
n
56
SER
55
B
PHE
56
n
57
PHE
56
B
SER
57
n
58
SER
57
B
LYS
58
n
59
LYS
58
B
ASP
59
n
60
ASP
59
B
TRP
60
n
61
TRP
60
B
SER
61
n
62
SER
61
B
PHE
62
n
63
PHE
62
B
TYR
63
n
64
TYR
63
B
LEU
64
n
65
LEU
64
B
LEU
65
n
66
LEU
65
B
TYR
66
n
67
TYR
66
B
TYR
67
n
68
TYR
67
B
THR
68
n
69
THR
68
B
GLU
69
n
70
GLU
69
B
PHE
70
n
71
PHE
70
B
THR
71
n
72
THR
71
B
PRO
72
n
73
PRO
72
B
ASN
73
n
74
ASN
73
B
GLU
74
n
75
GLU
74
B
LYS
75
n
76
LYS
75
B
ASP
76
n
77
ASP
76
B
GLU
77
n
78
GLU
77
B
TYR
78
n
79
TYR
78
B
ALA
79
n
80
ALA
79
B
CYS
80
n
81
CYS
80
B
ARG
81
n
82
ARG
81
B
VAL
82
n
83
VAL
82
B
ASN
83
n
84
ASN
83
B
HIS
84
n
85
HIS
84
B
VAL
85
n
86
VAL
85
B
THR
86
n
87
THR
86
B
LEU
87
n
88
LEU
87
B
SER
88
n
89
SER
88
B
GLY
89
n
90
GLY
89
B
PRO
90
n
91
PRO
90
B
ARG
91
n
92
ARG
91
B
THR
92
n
93
THR
92
B
VAL
93
n
94
VAL
93
B
LYS
94
n
95
LYS
94
B
TRP
95
n
96
TRP
95
B
ASP
96
n
97
ASP
96
B
ARG
97
n
98
ARG
97
B
ASP
98
n
99
ASP
98
B
MET
99
n
100
MET
99
B
MYR
1
n
1
MYR
1
C
GLY
2
n
2
GLY
2
C
GLY
3
n
3
GLY
3
C
ALA
4
n
4
ALA
4
C
ILE
5
n
5
ILE
5
C
author_and_software_defined_assembly
PISA
3
trimeric
gel filtration
4540
-41
19450
A
ASP
183
A
OD1
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
A
ASP
183
A
OD2
ASP
183
1_555
47.0
A
ASP
183
A
OD1
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O1
EDO
1_555
131.1
A
ASP
183
A
OD2
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O1
EDO
1_555
97.4
A
ASP
183
A
OD1
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O2
EDO
1_555
132.3
A
ASP
183
A
OD2
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O2
EDO
1_555
85.3
A
EDO
313
P
O1
EDO
1_555
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O2
EDO
1_555
42.2
A
GLN
262
A
OE1
GLN
262
1_555
A
NA
301
D
NA
NA
1_555
A
HIS
263
A
O
HIS
263
1_555
81.3
A
GLN
262
A
OE1
GLN
262
1_555
A
NA
301
D
NA
NA
1_555
A
LEU
266
A
O
LEU
266
1_555
100.4
A
HIS
263
A
O
HIS
263
1_555
A
NA
301
D
NA
NA
1_555
A
LEU
266
A
O
LEU
266
1_555
89.7
A
GLN
262
A
OE1
GLN
262
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
472
CA
O
HOH
1_555
89.7
A
HIS
263
A
O
HIS
263
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
472
CA
O
HOH
1_555
170.9
A
LEU
266
A
O
LEU
266
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
472
CA
O
HOH
1_555
90.5
A
GLN
262
A
OE1
GLN
262
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
563
CA
O
HOH
1_555
88.1
A
HIS
263
A
O
HIS
263
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
563
CA
O
HOH
1_555
83.3
A
LEU
266
A
O
LEU
266
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
563
CA
O
HOH
1_555
168.1
A
HOH
472
CA
O
HOH
1_555
A
NA
301
D
NA
NA
1_555
A
HOH
563
CA
O
HOH
1_555
98.0
A
GLN
262
A
OE1
GLN
262
1_555
A
NA
301
D
NA
NA
1_555
B
HOH
294
DA
O
HOH
4_455
175.0
A
HIS
263
A
O
HIS
263
1_555
A
NA
301
D
NA
NA
1_555
B
HOH
294
DA
O
HOH
4_455
96.2
A
LEU
266
A
O
LEU
266
1_555
A
NA
301
D
NA
NA
1_555
B
HOH
294
DA
O
HOH
4_455
84.0
A
HOH
472
CA
O
HOH
1_555
A
NA
301
D
NA
NA
1_555
B
HOH
294
DA
O
HOH
4_455
92.9
A
HOH
563
CA
O
HOH
1_555
A
NA
301
D
NA
NA
1_555
B
HOH
294
DA
O
HOH
4_455
87.2
A
GLU
264
A
OE1
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
GLU
264
A
OE2
GLU
264
1_555
49.3
A
GLU
264
A
OE1
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O1
EDO
1_555
97.2
A
GLU
264
A
OE2
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O1
EDO
1_555
101.8
A
GLU
264
A
OE1
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O2
EDO
1_555
63.4
A
GLU
264
A
OE2
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O2
EDO
1_555
105.6
A
EDO
310
M
O1
EDO
1_555
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O2
EDO
1_555
56.4
A
GLU
264
A
OE1
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
HOH
564
CA
O
HOH
1_555
72.1
A
GLU
264
A
OE2
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
A
HOH
564
CA
O
HOH
1_555
98.3
A
EDO
310
M
O1
EDO
1_555
A
NA
302
E
NA
NA
1_555
A
HOH
564
CA
O
HOH
1_555
141.3
A
EDO
310
M
O2
EDO
1_555
A
NA
302
E
NA
NA
1_555
A
HOH
564
CA
O
HOH
1_555
86.5
A
GLU
264
A
OE1
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
B
GLU
16
B
OE2
GLU
17
1_555
50.5
A
GLU
264
A
OE2
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
B
GLU
16
B
OE2
GLU
17
1_555
59.9
A
EDO
310
M
O1
EDO
1_555
A
NA
302
E
NA
NA
1_555
B
GLU
16
B
OE2
GLU
17
1_555
49.6
A
EDO
310
M
O2
EDO
1_555
A
NA
302
E
NA
NA
1_555
B
GLU
16
B
OE2
GLU
17
1_555
54.5
A
HOH
564
CA
O
HOH
1_555
A
NA
302
E
NA
NA
1_555
B
GLU
16
B
OE2
GLU
17
1_555
119.6
B
HIS
84
B
O
HIS
85
1_555
B
NA
101
R
NA
NA
1_555
B
LEU
87
B
O
LEU
88
1_555
90.8
B
HIS
84
B
O
HIS
85
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
209
DA
O
HOH
1_555
87.2
B
LEU
87
B
O
LEU
88
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
209
DA
O
HOH
1_555
93.8
B
HIS
84
B
O
HIS
85
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
255
DA
O
HOH
1_555
95.0
B
LEU
87
B
O
LEU
88
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
255
DA
O
HOH
1_555
82.1
B
HOH
209
DA
O
HOH
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
255
DA
O
HOH
1_555
175.3
B
HIS
84
B
O
HIS
85
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
278
DA
O
HOH
1_555
177.4
B
LEU
87
B
O
LEU
88
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
278
DA
O
HOH
1_555
89.3
B
HOH
209
DA
O
HOH
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
278
DA
O
HOH
1_555
90.2
B
HOH
255
DA
O
HOH
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
278
DA
O
HOH
1_555
87.6
B
HIS
84
B
O
HIS
85
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
287
DA
O
HOH
1_555
86.9
B
LEU
87
B
O
LEU
88
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
287
DA
O
HOH
1_555
173.2
B
HOH
209
DA
O
HOH
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
287
DA
O
HOH
1_555
92.5
B
HOH
255
DA
O
HOH
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
287
DA
O
HOH
1_555
91.7
B
HOH
278
DA
O
HOH
1_555
B
NA
101
R
NA
NA
1_555
B
HOH
287
DA
O
HOH
1_555
93.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
46
A
O
GLU
46
A
N
ARG
35
A
N
ARG
35
A
O
PHE
36
A
O
PHE
36
A
N
TYR
24
A
N
TYR
24
A
O
TYR
27
A
O
TYR
27
A
N
ARG
6
A
N
ARG
6
A
N
HIS
3
A
N
HIS
3
A
O
LEU
103
A
O
LEU
103
A
N
ASP
102
A
N
ASP
102
A
O
LEU
110
A
O
LEU
110
A
N
HIS
114
A
N
HIS
114
A
O
LEU
126
A
O
LEU
126
A
N
ALA
125
A
N
ALA
125
A
O
ILE
134
A
O
ILE
134
A
N
HIS
188
A
N
HIS
188
A
O
TRP
204
A
O
TRP
204
A
N
ALA
199
A
N
ALA
199
A
O
VAL
249
A
O
VAL
249
A
O
ALA
246
A
O
ALA
246
A
N
GLU
229
A
N
GLU
229
A
N
HIS
188
A
N
HIS
188
A
O
TRP
204
A
O
TRP
204
A
N
ALA
199
A
N
ALA
199
A
O
VAL
249
A
O
VAL
249
A
O
GLN
242
A
O
GLN
242
A
N
ARG
234
A
N
ARG
234
A
O
GLU
222
A
O
GLU
222
A
N
ARG
219
A
N
ARG
219
A
N
THR
216
A
N
THR
216
A
O
HIS
260
A
O
HIS
260
A
N
CYS
259
A
N
CYS
259
A
O
LEU
272
A
O
LEU
272
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
CYS
25
B
N
CYS
26
B
O
TYR
66
B
O
TYR
67
B
O
TYR
67
B
O
TYR
68
B
N
GLU
50
B
N
GLU
51
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
CYS
25
B
N
CYS
26
B
O
TYR
66
B
O
TYR
67
B
O
TYR
63
B
O
TYR
64
B
N
SER
55
B
N
SER
56
B
O
GLU
44
B
O
GLU
45
B
N
LYS
41
B
N
LYS
42
B
N
LEU
40
B
N
LEU
41
B
O
ALA
79
B
O
ALA
80
B
N
VAL
82
B
N
VAL
83
B
O
ARG
91
B
O
ARG
92
1
A
ASP
39
13.13
B
1
A
ASP
29
50.98
-125.47
1
A
HIS
114
-160.15
102.69
1
C
ALA
4
135.01
130.09
0.215
0.179
1.80
44.7
2256
44052
99.9
1
FREE R-VALUE
MOLECULAR REPLACEMENT
4ZFZ
1.80
44.7
304
3512
88
0
3120
1.80
50
6IWG
44246
1
43.9
7.1
99.9
1.80
1.84
1
data scaling
HKL-2000
data collection
HKL-2000
data reduction
HKL-2000
refinement
PHENIX
phasing
MOLREP
N
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*05104 complexed with N-myristoylated 4-mer lipopeptide derived from SIV nef protein
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
A
ALA
49
A
ALA
49
HELX_P
A
GLU
53
A
GLU
53
5
AA1
5
A
GLY
56
A
GLY
56
HELX_P
A
TYR
85
A
TYR
85
1
AA2
30
A
ASP
137
A
ASP
137
HELX_P
A
THR
150
A
THR
150
1
AA3
14
A
ARG
151
A
ARG
151
HELX_P
A
GLY
162
A
GLY
162
1
AA4
12
A
GLY
162
A
GLY
162
HELX_P
A
GLY
175
A
GLY
175
1
AA5
14
A
GLY
175
A
GLY
175
HELX_P
A
GLN
180
A
GLN
180
1
AA6
6
A
GLU
253
A
GLU
253
HELX_P
A
GLN
255
A
GLN
255
5
AA7
3
disulf
2.045
A
CYS
101
A
SG
CYS
101
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
2.028
A
CYS
203
A
SG
CYS
203
1_555
A
CYS
259
A
SG
CYS
259
1_555
disulf
2.020
B
CYS
25
B
SG
CYS
26
1_555
B
CYS
80
B
SG
CYS
81
1_555
covale
1.441
both
C
MYR
1
C
C1
MYR
1
1_555
C
GLY
2
C
N
GLY
2
1_555
metalc
2.999
A
ASP
183
A
OD1
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
metalc
2.029
A
ASP
183
A
OD2
ASP
183
1_555
A
NA
303
F
NA
NA
1_555
metalc
2.357
A
GLN
262
A
OE1
GLN
262
1_555
A
NA
301
D
NA
NA
1_555
metalc
2.512
A
HIS
263
A
O
HIS
263
1_555
A
NA
301
D
NA
NA
1_555
metalc
2.908
A
GLU
264
A
OE1
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
metalc
2.016
A
GLU
264
A
OE2
GLU
264
1_555
A
NA
302
E
NA
NA
1_555
metalc
2.225
A
LEU
266
A
O
LEU
266
1_555
A
NA
301
D
NA
NA
1_555
metalc
2.540
A
NA
301
D
NA
NA
1_555
A
HOH
472
CA
O
HOH
1_555
metalc
2.518
A
NA
301
D
NA
NA
1_555
A
HOH
563
CA
O
HOH
1_555
metalc
2.370
A
NA
301
D
NA
NA
1_555
B
HOH
294
DA
O
HOH
4_455
metalc
2.807
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O1
EDO
1_555
metalc
3.019
A
NA
302
E
NA
NA
1_555
A
EDO
310
M
O2
EDO
1_555
metalc
2.809
A
NA
302
E
NA
NA
1_555
A
HOH
564
CA
O
HOH
1_555
metalc
2.760
A
NA
302
E
NA
NA
4_555
B
GLU
16
B
OE2
GLU
17
1_555
metalc
2.001
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O1
EDO
1_555
metalc
2.921
A
NA
303
F
NA
NA
1_555
A
EDO
313
P
O2
EDO
1_555
metalc
2.468
B
HIS
84
B
O
HIS
85
1_555
B
NA
101
R
NA
NA
1_555
metalc
2.273
B
LEU
87
B
O
LEU
88
1_555
B
NA
101
R
NA
NA
1_555
metalc
2.401
B
NA
101
R
NA
NA
1_555
B
HOH
209
DA
O
HOH
1_555
metalc
2.533
B
NA
101
R
NA
NA
1_555
B
HOH
255
DA
O
HOH
1_555
metalc
2.552
B
NA
101
R
NA
NA
1_555
B
HOH
278
DA
O
HOH
1_555
metalc
2.435
B
NA
101
R
NA
NA
1_555
B
HOH
287
DA
O
HOH
1_555
IMMUNE SYSTEM
Antigen presentation, Major histocompatibility complex, N-myristoylation, AIDS, nef, IMMUNE SYSTEM
A
TYR
209
A
TYR
209
1
A
PRO
210
A
PRO
210
3.52
B
HIS
31
B
HIS
32
1
B
PRO
32
B
PRO
33
3.37
B2ZHY7_MACMU
UNP
1
22
B2ZHY7
GSHSLRYFGTAVSRPGRGEPRFIYVGYVDDTQFVRFDSDAASPRTEPRAPWVEQEGPEYWEEETRRAKARAQTDRADLRT
LRGYYNQSEAGSHTLQWMAGCDLGPNGRLLRGYHQSAYDGKDYIALNRDLRSWIAADMAAQNTQRKWEATRYAERFRAYL
EGPCLEWLRRYLENGKKTLQHADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDIEFVETRPAGDGT
FQKWGAVVVPSGEEQRYTCHVQHKGLPEPLTLRWEP
B2MG_MACMU
UNP
2
20
Q6V7J5
AIQRTPKIQVYSRHPPENGKPNFLNCYVSGFHPSDIEVDLLKNGEKMGKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYA
CRVNHVTLSGPRTVKWDRDM
6IWG
PDB
3
1
6IWG
22
297
6IWG
1
276
B2ZHY7
A
1
1
276
20
119
6IWG
0
99
Q6V7J5
B
2
1
100
1
5
6IWG
1
5
6IWG
C
3
1
5
1
ARG
engineered mutation
GLU
128
6IWG
A
B2ZHY7
UNP
149
128
1
LYS
engineered mutation
GLU
177
6IWG
A
B2ZHY7
UNP
198
177
1
ASP
engineered mutation
GLU
223
6IWG
A
B2ZHY7
UNP
244
223
1
LYS
engineered mutation
GLU
264
6IWG
A
B2ZHY7
UNP
285
264
8
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
46
A
PRO
47
A
PRO
47
A
THR
31
A
THR
31
A
ASP
37
A
ASP
37
A
ARG
21
A
ARG
21
A
VAL
28
A
VAL
28
A
HIS
3
A
HIS
3
A
VAL
12
A
VAL
12
A
THR
94
A
THR
94
A
LEU
103
A
LEU
103
A
LEU
109
A
LEU
109
A
TYR
118
A
TYR
118
A
LYS
121
A
LYS
121
A
LEU
126
A
LEU
126
A
TRP
133
A
TRP
133
A
ALA
135
A
ALA
135
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
GLU
198
A
GLU
198
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
PRO
250
A
PRO
250
A
ILE
228
A
ILE
228
A
PHE
230
A
PHE
230
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
GLU
198
A
GLU
198
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
PRO
250
A
PRO
250
A
ARG
234
A
ARG
234
A
PRO
235
A
PRO
235
A
GLU
222
A
GLU
222
A
GLU
223
A
GLU
223
A
THR
214
A
THR
214
A
ARG
219
A
ARG
219
A
TYR
257
A
TYR
257
A
GLN
262
A
GLN
262
A
LEU
270
A
LEU
270
A
LEU
272
A
LEU
272
B
LYS
6
B
LYS
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
GLU
50
B
GLU
51
B
HIS
51
B
HIS
52
B
LYS
6
B
LYS
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
SER
55
B
SER
56
B
PHE
56
B
PHE
57
B
GLU
44
B
GLU
45
B
LYS
45
B
LYS
46
B
GLU
36
B
GLU
37
B
LYS
41
B
LYS
42
B
TYR
78
B
TYR
79
B
ASN
83
B
ASN
84
B
ARG
91
B
ARG
92
B
LYS
94
B
LYS
95
binding site for residue NA A 301
A
NA
301
Software
6
binding site for residue NA A 302
A
NA
302
Software
4
binding site for residue NA A 303
A
NA
303
Software
2
binding site for residue EDO A 304
A
EDO
304
Software
5
binding site for residue EDO A 305
A
EDO
305
Software
6
binding site for residue EDO A 306
A
EDO
306
Software
9
binding site for residue EDO A 307
A
EDO
307
Software
4
binding site for residue EDO A 308
A
EDO
308
Software
3
binding site for residue EDO A 309
A
EDO
309
Software
8
binding site for residue EDO A 310
A
EDO
310
Software
7
binding site for residue EDO A 311
A
EDO
311
Software
5
binding site for residue EDO A 312
A
EDO
312
Software
3
binding site for residue EDO A 313
A
EDO
313
Software
6
binding site for residue BO3 A 314
A
BO3
314
Software
6
binding site for residue NA B 101
B
NA
101
Software
6
binding site for residue EDO B 102
B
EDO
102
Software
6
binding site for residue EDO B 103
B
EDO
103
Software
4
binding site for residue EDO B 104
B
EDO
104
Software
2
binding site for residue EDO B 105
B
EDO
105
Software
10
binding site for residue EDO B 106
B
EDO
106
Software
4
binding site for residue EDO B 107
B
EDO
107
Software
5
binding site for residue EDO B 108
B
EDO
108
Software
4
binding site for residue EDO B 109
B
EDO
109
Software
6
binding site for residue BO3 B 110
B
BO3
110
Software
4
binding site for residue BO3 B 111
B
BO3
111
Software
5
A
GLN
262
A
GLN
262
6
1_555
A
HIS
263
A
HIS
263
6
1_555
A
LEU
266
A
LEU
266
6
1_555
A
HOH
472
CA
HOH
6
1_555
A
HOH
563
CA
HOH
6
1_555
B
HOH
294
DA
HOH
6
4_455
A
GLU
264
A
GLU
264
4
1_555
A
EDO
310
M
EDO
4
1_555
A
HOH
564
CA
HOH
4
1_555
B
GLU
16
B
GLU
17
4
4_455
A
ASP
183
A
ASP
183
2
1_555
A
EDO
313
P
EDO
2
1_555
A
TYR
7
A
TYR
7
5
1_555
A
TYR
159
A
TYR
159
5
1_555
A
TRP
167
A
TRP
167
5
1_555
A
TYR
171
A
TYR
171
5
1_555
A
EDO
307
J
EDO
5
1_555
A
GLU
161
A
GLU
161
6
1_555
A
BO3
314
Q
BO3
6
1_555
B
THR
86
B
THR
87
6
3_555
B
LEU
87
B
LEU
88
6
3_555
B
SER
88
B
SER
89
6
3_555
B
HOH
226
DA
HOH
6
3_555
A
ASP
122
A
ASP
122
9
1_555
A
TYR
123
A
TYR
123
9
1_555
A
ILE
124
A
ILE
124
9
1_555
A
ALA
125
A
ALA
125
9
1_555
A
ILE
134
A
ILE
134
9
1_555
A
ALA
135
A
ALA
135
9
1_555
A
ALA
136
A
ALA
136
9
1_555
A
HOH
409
CA
HOH
9
1_555
A
HOH
518
CA
HOH
9
1_555
A
TYR
7
A
TYR
7
4
1_555
A
GLU
63
A
GLU
63
4
1_555
A
ARG
66
A
ARG
66
4
1_555
A
EDO
304
G
EDO
4
1_555
A
SER
88
A
SER
88
3
1_555
A
GLU
89
A
GLU
89
3
1_555
A
PRO
193
A
PRO
193
3
2_555
A
ASP
30
A
ASP
30
8
1_555
A
PRO
235
A
PRO
235
8
1_555
A
GLY
239
A
GLY
239
8
1_555
A
PHE
241
A
PHE
241
8
1_555
A
HOH
421
CA
HOH
8
1_555
A
HOH
429
CA
HOH
8
1_555
A
HOH
468
CA
HOH
8
1_555
A
HOH
523
CA
HOH
8
1_555
A
LEU
179
A
LEU
179
7
1_555
A
PRO
210
A
PRO
210
7
1_555
A
GLU
264
A
GLU
264
7
1_555
A
NA
302
E
NA
7
1_555
A
HOH
403
CA
HOH
7
1_555
B
GLU
16
B
GLU
17
7
4_455
B
HOH
219
DA
HOH
7
4_455
A
PHE
8
A
PHE
8
5
1_555
A
TYR
27
A
TYR
27
5
1_555
A
ASP
29
A
ASP
29
5
1_555
A
HOH
405
CA
HOH
5
1_555
B
HOH
213
DA
HOH
5
1_555
A
GLU
166
A
GLU
166
3
1_555
A
TRP
167
A
TRP
167
3
1_555
A
ARG
170
A
ARG
170
3
1_555
A
THR
178
A
THR
178
6
1_555
A
ASP
183
A
ASP
183
6
1_555
A
TYR
209
A
TYR
209
6
1_555
A
GLY
239
A
GLY
239
6
1_555
A
NA
303
F
NA
6
1_555
A
HOH
451
CA
HOH
6
1_555
A
EDO
305
H
EDO
6
1_555
A
HOH
527
CA
HOH
6
1_555
B
SER
88
B
SER
89
6
3_555
B
GLY
89
B
GLY
90
6
3_555
B
PRO
90
B
PRO
91
6
3_555
B
ARG
91
B
ARG
92
6
3_555
B
HIS
84
B
HIS
85
6
1_555
B
LEU
87
B
LEU
88
6
1_555
B
HOH
209
DA
HOH
6
1_555
B
HOH
255
DA
HOH
6
1_555
B
HOH
278
DA
HOH
6
1_555
B
HOH
287
DA
HOH
6
1_555
A
ARG
157
A
ARG
157
6
3_545
A
HOH
483
CA
HOH
6
3_545
B
LYS
6
B
LYS
7
6
1_555
B
ILE
7
B
ILE
8
6
1_555
B
HOH
203
DA
HOH
6
1_555
B
HOH
217
DA
HOH
6
1_555
B
THR
4
B
THR
5
4
1_555
B
GLY
29
B
GLY
30
4
1_555
B
HOH
210
DA
HOH
4
1_555
B
HOH
214
DA
HOH
4
1_555
B
SER
33
B
SER
34
2
1_555
B
ASP
34
B
ASP
35
2
1_555
A
TRP
204
A
TRP
204
10
1_555
B
TYR
10
B
TYR
11
10
1_555
B
SER
11
B
SER
12
10
1_555
B
PRO
15
B
PRO
16
10
1_555
B
TRP
95
B
TRP
96
10
1_555
B
ASP
96
B
ASP
97
10
1_555
B
ARG
97
B
ARG
98
10
1_555
B
MET
99
B
MET
100
10
1_555
B
HOH
205
DA
HOH
10
1_555
B
HOH
280
DA
HOH
10
1_555
A
GLY
237
A
GLY
237
4
1_555
A
HOH
484
CA
HOH
4
1_555
B
SER
52
B
SER
53
4
1_555
B
TYR
67
B
TYR
68
4
1_555
A
GLU
232
A
GLU
232
5
1_555
A
THR
233
A
THR
233
5
1_555
B
TYR
26
B
TYR
27
5
1_555
B
SER
28
B
SER
29
5
1_555
B
HOH
204
DA
HOH
5
1_555
A
PHE
8
A
PHE
8
4
1_555
B
PHE
56
B
PHE
57
4
1_555
B
SER
57
B
SER
58
4
1_555
B
LYS
58
B
LYS
59
4
1_555
B
LYS
41
B
LYS
42
6
1_555
B
MET
46
B
MET
47
6
1_555
B
GLU
69
B
GLU
70
6
1_555
B
PHE
70
B
PHE
71
6
1_555
B
THR
71
B
THR
72
6
1_555
B
TYR
78
B
TYR
79
6
1_555
B
LYS
58
B
LYS
59
4
1_555
B
ASP
59
B
ASP
60
4
1_555
B
HOH
257
DA
HOH
4
1_555
B
HOH
275
DA
HOH
4
1_555
A
ARG
131
A
ARG
131
5
3_545
A
ARG
157
A
ARG
157
5
3_545
A
HOH
533
CA
HOH
5
3_545
B
THR
92
B
THR
93
5
1_555
B
HOH
206
DA
HOH
5
1_555
19
P 21 21 21