0.029415
0.000000
0.000000
-0.000000
0.015043
0.000000
0.000000
-0.000000
0.013091
0.00000
0.00000
0.00000
0000-0001-7178-5966
Viswanathan, V.
Sharma, P.
Chaudhary, A.
0000-0001-6627-0669
Sharma, S.
0000-0002-2886-7963
Singh, T.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
33.996
66.474
76.387
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H8 O
60.095
N-PROPANOL
1-PROPONOL
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
R
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
N
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
To Be Published
0353
Crystal structure of the complex of peptidyl-tRNA hydrolase with N-propanol at 1.43 A resolution
10.2210/pdb6ix6/pdb
pdb_00006ix6
100
1
N
PIXEL
2018-11-08
DECTRIS PILATUS3 2M
SINGLE WAVELENGTH
M
x-ray
1
0.96600
1.0
MASSIF-1
ESRF
0.96600
SYNCHROTRON
ESRF BEAMLINE MASSIF-1
21222.219
Peptidyl-tRNA hydrolase
3.1.1.29
R71K
1
man
polymer
60.095
N-PROPANOL
1
syn
non-polymer
18.015
water
249
nat
water
PTH
no
no
GSHMSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNKSGQSVV
PFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNE
QSLMDGAIDHALSKVKLLVQGQVPQAMNQINAYKPA
GSHMSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNKSGQSVV
PFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNE
QSLMDGAIDHALSKVKLLVQGQVPQAMNQINAYKPA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81
sample
1
196
pth, HMPREF0010_01329
575584
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
562
Escherichia coli
Biological sequence
1
2.03
39.51
VAPOR DIFFUSION, HANGING DROP
7.5
12% PEG 1500, 0.1M HEPES PH 7.5
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2018-12-26
1
1
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBJ
Y
PDBJ
2018-12-09
REL
REL
1
A
O
HOH
549
6.07
POL
N-PROPANOL
HOH
water
5Y9A
PDB
experimental model
POL
194
2
POL
POL
201
A
HOH
127
3
HOH
HOH
301
A
HOH
304
3
HOH
HOH
302
A
HOH
308
3
HOH
HOH
303
A
HOH
364
3
HOH
HOH
304
A
HOH
324
3
HOH
HOH
305
A
HOH
56
3
HOH
HOH
306
A
HOH
151
3
HOH
HOH
307
A
HOH
422
3
HOH
HOH
308
A
HOH
89
3
HOH
HOH
309
A
HOH
3
3
HOH
HOH
310
A
HOH
302
3
HOH
HOH
311
A
HOH
321
3
HOH
HOH
312
A
HOH
349
3
HOH
HOH
313
A
HOH
470
3
HOH
HOH
314
A
HOH
88
3
HOH
HOH
315
A
HOH
374
3
HOH
HOH
316
A
HOH
316
3
HOH
HOH
317
A
HOH
334
3
HOH
HOH
318
A
HOH
372
3
HOH
HOH
319
A
HOH
117
3
HOH
HOH
320
A
HOH
419
3
HOH
HOH
321
A
HOH
307
3
HOH
HOH
322
A
HOH
322
3
HOH
HOH
323
A
HOH
5
3
HOH
HOH
324
A
HOH
111
3
HOH
HOH
325
A
HOH
404
3
HOH
HOH
326
A
HOH
305
3
HOH
HOH
327
A
HOH
309
3
HOH
HOH
328
A
HOH
144
3
HOH
HOH
329
A
HOH
343
3
HOH
HOH
330
A
HOH
463
3
HOH
HOH
331
A
HOH
312
3
HOH
HOH
332
A
HOH
335
3
HOH
HOH
333
A
HOH
323
3
HOH
HOH
334
A
HOH
423
3
HOH
HOH
335
A
HOH
46
3
HOH
HOH
336
A
HOH
478
3
HOH
HOH
337
A
HOH
110
3
HOH
HOH
338
A
HOH
342
3
HOH
HOH
339
A
HOH
415
3
HOH
HOH
340
A
HOH
337
3
HOH
HOH
341
A
HOH
357
3
HOH
HOH
342
A
HOH
395
3
HOH
HOH
343
A
HOH
465
3
HOH
HOH
344
A
HOH
339
3
HOH
HOH
345
A
HOH
331
3
HOH
HOH
346
A
HOH
350
3
HOH
HOH
347
A
HOH
313
3
HOH
HOH
348
A
HOH
318
3
HOH
HOH
349
A
HOH
21
3
HOH
HOH
350
A
HOH
344
3
HOH
HOH
351
A
HOH
341
3
HOH
HOH
352
A
HOH
317
3
HOH
HOH
353
A
HOH
48
3
HOH
HOH
354
A
HOH
311
3
HOH
HOH
355
A
HOH
325
3
HOH
HOH
356
A
HOH
340
3
HOH
HOH
357
A
HOH
320
3
HOH
HOH
358
A
HOH
303
3
HOH
HOH
359
A
HOH
326
3
HOH
HOH
360
A
HOH
329
3
HOH
HOH
361
A
HOH
141
3
HOH
HOH
362
A
HOH
359
3
HOH
HOH
363
A
HOH
400
3
HOH
HOH
364
A
HOH
113
3
HOH
HOH
365
A
HOH
360
3
HOH
HOH
366
A
HOH
362
3
HOH
HOH
367
A
HOH
356
3
HOH
HOH
368
A
HOH
30
3
HOH
HOH
369
A
HOH
327
3
HOH
HOH
370
A
HOH
352
3
HOH
HOH
371
A
HOH
103
3
HOH
HOH
372
A
HOH
366
3
HOH
HOH
373
A
HOH
390
3
HOH
HOH
374
A
HOH
104
3
HOH
HOH
375
A
HOH
107
3
HOH
HOH
376
A
HOH
355
3
HOH
HOH
377
A
HOH
4
3
HOH
HOH
378
A
HOH
367
3
HOH
HOH
379
A
HOH
125
3
HOH
HOH
380
A
HOH
386
3
HOH
HOH
381
A
HOH
358
3
HOH
HOH
382
A
HOH
314
3
HOH
HOH
383
A
HOH
399
3
HOH
HOH
384
A
HOH
336
3
HOH
HOH
385
A
HOH
351
3
HOH
HOH
386
A
HOH
119
3
HOH
HOH
387
A
HOH
354
3
HOH
HOH
388
A
HOH
347
3
HOH
HOH
389
A
HOH
333
3
HOH
HOH
390
A
HOH
138
3
HOH
HOH
391
A
HOH
353
3
HOH
HOH
392
A
HOH
391
3
HOH
HOH
393
A
HOH
363
3
HOH
HOH
394
A
HOH
370
3
HOH
HOH
395
A
HOH
105
3
HOH
HOH
396
A
HOH
378
3
HOH
HOH
397
A
HOH
451
3
HOH
HOH
398
A
HOH
443
3
HOH
HOH
399
A
HOH
306
3
HOH
HOH
400
A
HOH
108
3
HOH
HOH
401
A
HOH
430
3
HOH
HOH
402
A
HOH
387
3
HOH
HOH
403
A
HOH
436
3
HOH
HOH
404
A
HOH
328
3
HOH
HOH
405
A
HOH
346
3
HOH
HOH
406
A
HOH
361
3
HOH
HOH
407
A
HOH
315
3
HOH
HOH
408
A
HOH
380
3
HOH
HOH
409
A
HOH
383
3
HOH
HOH
410
A
HOH
348
3
HOH
HOH
411
A
HOH
371
3
HOH
HOH
412
A
HOH
373
3
HOH
HOH
413
A
HOH
388
3
HOH
HOH
414
A
HOH
453
3
HOH
HOH
415
A
HOH
365
3
HOH
HOH
416
A
HOH
376
3
HOH
HOH
417
A
HOH
368
3
HOH
HOH
418
A
HOH
426
3
HOH
HOH
419
A
HOH
377
3
HOH
HOH
420
A
HOH
424
3
HOH
HOH
421
A
HOH
397
3
HOH
HOH
422
A
HOH
475
3
HOH
HOH
423
A
HOH
369
3
HOH
HOH
424
A
HOH
437
3
HOH
HOH
425
A
HOH
418
3
HOH
HOH
426
A
HOH
439
3
HOH
HOH
427
A
HOH
375
3
HOH
HOH
428
A
HOH
65
3
HOH
HOH
429
A
HOH
382
3
HOH
HOH
430
A
HOH
381
3
HOH
HOH
431
A
HOH
473
3
HOH
HOH
432
A
HOH
392
3
HOH
HOH
433
A
HOH
401
3
HOH
HOH
434
A
HOH
379
3
HOH
HOH
435
A
HOH
431
3
HOH
HOH
436
A
HOH
60
3
HOH
HOH
437
A
HOH
385
3
HOH
HOH
438
A
HOH
408
3
HOH
HOH
439
A
HOH
402
3
HOH
HOH
440
A
HOH
407
3
HOH
HOH
441
A
HOH
403
3
HOH
HOH
442
A
HOH
24
3
HOH
HOH
443
A
HOH
345
3
HOH
HOH
444
A
HOH
409
3
HOH
HOH
445
A
HOH
384
3
HOH
HOH
446
A
HOH
411
3
HOH
HOH
447
A
HOH
398
3
HOH
HOH
448
A
HOH
447
3
HOH
HOH
449
A
HOH
393
3
HOH
HOH
450
A
HOH
421
3
HOH
HOH
451
A
HOH
394
3
HOH
HOH
452
A
HOH
389
3
HOH
HOH
453
A
HOH
101
3
HOH
HOH
454
A
HOH
319
3
HOH
HOH
455
A
HOH
413
3
HOH
HOH
456
A
HOH
414
3
HOH
HOH
457
A
HOH
93
3
HOH
HOH
458
A
HOH
115
3
HOH
HOH
459
A
HOH
140
3
HOH
HOH
460
A
HOH
11
3
HOH
HOH
461
A
HOH
396
3
HOH
HOH
462
A
HOH
330
3
HOH
HOH
463
A
HOH
448
3
HOH
HOH
464
A
HOH
412
3
HOH
HOH
465
A
HOH
410
3
HOH
HOH
466
A
HOH
417
3
HOH
HOH
467
A
HOH
444
3
HOH
HOH
468
A
HOH
405
3
HOH
HOH
469
A
HOH
433
3
HOH
HOH
470
A
HOH
416
3
HOH
HOH
471
A
HOH
440
3
HOH
HOH
472
A
HOH
406
3
HOH
HOH
473
A
HOH
438
3
HOH
HOH
474
A
HOH
428
3
HOH
HOH
475
A
HOH
425
3
HOH
HOH
476
A
HOH
126
3
HOH
HOH
477
A
HOH
54
3
HOH
HOH
478
A
HOH
435
3
HOH
HOH
479
A
HOH
338
3
HOH
HOH
480
A
HOH
152
3
HOH
HOH
481
A
HOH
71
3
HOH
HOH
482
A
HOH
332
3
HOH
HOH
483
A
HOH
131
3
HOH
HOH
484
A
HOH
457
3
HOH
HOH
485
A
HOH
429
3
HOH
HOH
486
A
HOH
47
3
HOH
HOH
487
A
HOH
32
3
HOH
HOH
488
A
HOH
432
3
HOH
HOH
489
A
HOH
461
3
HOH
HOH
490
A
HOH
64
3
HOH
HOH
491
A
HOH
86
3
HOH
HOH
492
A
HOH
442
3
HOH
HOH
493
A
HOH
310
3
HOH
HOH
494
A
HOH
123
3
HOH
HOH
495
A
HOH
420
3
HOH
HOH
496
A
HOH
59
3
HOH
HOH
497
A
HOH
445
3
HOH
HOH
498
A
HOH
427
3
HOH
HOH
499
A
HOH
460
3
HOH
HOH
500
A
HOH
434
3
HOH
HOH
501
A
HOH
452
3
HOH
HOH
502
A
HOH
112
3
HOH
HOH
503
A
HOH
472
3
HOH
HOH
504
A
HOH
122
3
HOH
HOH
505
A
HOH
49
3
HOH
HOH
506
A
HOH
449
3
HOH
HOH
507
A
HOH
28
3
HOH
HOH
508
A
HOH
82
3
HOH
HOH
509
A
HOH
29
3
HOH
HOH
510
A
HOH
450
3
HOH
HOH
511
A
HOH
454
3
HOH
HOH
512
A
HOH
35
3
HOH
HOH
513
A
HOH
149
3
HOH
HOH
514
A
HOH
468
3
HOH
HOH
515
A
HOH
458
3
HOH
HOH
516
A
HOH
462
3
HOH
HOH
517
A
HOH
124
3
HOH
HOH
518
A
HOH
81
3
HOH
HOH
519
A
HOH
459
3
HOH
HOH
520
A
HOH
135
3
HOH
HOH
521
A
HOH
31
3
HOH
HOH
522
A
HOH
467
3
HOH
HOH
523
A
HOH
464
3
HOH
HOH
524
A
HOH
37
3
HOH
HOH
525
A
HOH
41
3
HOH
HOH
526
A
HOH
466
3
HOH
HOH
527
A
HOH
57
3
HOH
HOH
528
A
HOH
97
3
HOH
HOH
529
A
HOH
441
3
HOH
HOH
530
A
HOH
446
3
HOH
HOH
531
A
HOH
95
3
HOH
HOH
532
A
HOH
70
3
HOH
HOH
533
A
HOH
53
3
HOH
HOH
534
A
HOH
43
3
HOH
HOH
535
A
HOH
116
3
HOH
HOH
536
A
HOH
474
3
HOH
HOH
537
A
HOH
20
3
HOH
HOH
538
A
HOH
99
3
HOH
HOH
539
A
HOH
91
3
HOH
HOH
540
A
HOH
469
3
HOH
HOH
541
A
HOH
455
3
HOH
HOH
542
A
HOH
456
3
HOH
HOH
543
A
HOH
471
3
HOH
HOH
544
A
HOH
477
3
HOH
HOH
545
A
HOH
150
3
HOH
HOH
546
A
HOH
92
3
HOH
HOH
547
A
HOH
476
3
HOH
HOH
548
A
HOH
26
3
HOH
HOH
549
A
GLY
-2
n
1
GLY
-2
A
SER
-1
n
2
SER
-1
A
HIS
0
n
3
HIS
0
A
MET
1
n
4
MET
1
A
SER
2
n
5
SER
2
A
ASN
3
n
6
ASN
3
A
ILE
4
n
7
ILE
4
A
SER
5
n
8
SER
5
A
LEU
6
n
9
LEU
6
A
ILE
7
n
10
ILE
7
A
VAL
8
n
11
VAL
8
A
GLY
9
n
12
GLY
9
A
LEU
10
n
13
LEU
10
A
GLY
11
n
14
GLY
11
A
ASN
12
n
15
ASN
12
A
PRO
13
n
16
PRO
13
A
GLY
14
n
17
GLY
14
A
SER
15
n
18
SER
15
A
GLU
16
n
19
GLU
16
A
TYR
17
n
20
TYR
17
A
ALA
18
n
21
ALA
18
A
GLN
19
n
22
GLN
19
A
THR
20
n
23
THR
20
A
ARG
21
n
24
ARG
21
A
HIS
22
n
25
HIS
22
A
ASN
23
n
26
ASN
23
A
ALA
24
n
27
ALA
24
A
GLY
25
n
28
GLY
25
A
PHE
26
n
29
PHE
26
A
TRP
27
n
30
TRP
27
A
PHE
28
n
31
PHE
28
A
VAL
29
n
32
VAL
29
A
GLU
30
n
33
GLU
30
A
GLN
31
n
34
GLN
31
A
LEU
32
n
35
LEU
32
A
ALA
33
n
36
ALA
33
A
ASP
34
n
37
ASP
34
A
LYS
35
n
38
LYS
35
A
TYR
36
n
39
TYR
36
A
GLY
37
n
40
GLY
37
A
ILE
38
n
41
ILE
38
A
THR
39
n
42
THR
39
A
LEU
40
n
43
LEU
40
A
LYS
41
n
44
LYS
41
A
ASN
42
n
45
ASN
42
A
ASP
43
n
46
ASP
43
A
PRO
44
n
47
PRO
44
A
LYS
45
n
48
LYS
45
A
PHE
46
n
49
PHE
46
A
HIS
47
n
50
HIS
47
A
GLY
48
n
51
GLY
48
A
ILE
49
n
52
ILE
49
A
SER
50
n
53
SER
50
A
GLY
51
n
54
GLY
51
A
ARG
52
n
55
ARG
52
A
GLY
53
n
56
GLY
53
A
ASN
54
n
57
ASN
54
A
ILE
55
n
58
ILE
55
A
GLU
56
n
59
GLU
56
A
GLY
57
n
60
GLY
57
A
HIS
58
n
61
HIS
58
A
ASP
59
n
62
ASP
59
A
VAL
60
n
63
VAL
60
A
ARG
61
n
64
ARG
61
A
LEU
62
n
65
LEU
62
A
LEU
63
n
66
LEU
63
A
LEU
64
n
67
LEU
64
A
PRO
65
n
68
PRO
65
A
MET
66
n
69
MET
66
A
THR
67
n
70
THR
67
A
TYR
68
n
71
TYR
68
A
MET
69
n
72
MET
69
A
ASN
70
n
73
ASN
70
A
LYS
71
n
74
LYS
71
A
SER
72
n
75
SER
72
A
GLY
73
n
76
GLY
73
A
GLN
74
n
77
GLN
74
A
SER
75
n
78
SER
75
A
VAL
76
n
79
VAL
76
A
VAL
77
n
80
VAL
77
A
PRO
78
n
81
PRO
78
A
PHE
79
n
82
PHE
79
A
SER
80
n
83
SER
80
A
LYS
81
n
84
LYS
81
A
PHE
82
n
85
PHE
82
A
TYR
83
n
86
TYR
83
A
GLN
84
n
87
GLN
84
A
ILE
85
n
88
ILE
85
A
ALA
86
n
89
ALA
86
A
PRO
87
n
90
PRO
87
A
GLU
88
n
91
GLU
88
A
ALA
89
n
92
ALA
89
A
ILE
90
n
93
ILE
90
A
LEU
91
n
94
LEU
91
A
ILE
92
n
95
ILE
92
A
ALA
93
n
96
ALA
93
A
HIS
94
n
97
HIS
94
A
ASP
95
n
98
ASP
95
A
GLU
96
n
99
GLU
96
A
LEU
97
n
100
LEU
97
A
ASP
98
n
101
ASP
98
A
MET
99
n
102
MET
99
A
ASN
100
n
103
ASN
100
A
PRO
101
n
104
PRO
101
A
GLY
102
n
105
GLY
102
A
VAL
103
n
106
VAL
103
A
ILE
104
n
107
ILE
104
A
ARG
105
n
108
ARG
105
A
LEU
106
n
109
LEU
106
A
LYS
107
n
110
LYS
107
A
THR
108
n
111
THR
108
A
GLY
109
n
112
GLY
109
A
GLY
110
n
113
GLY
110
A
GLY
111
n
114
GLY
111
A
HIS
112
n
115
HIS
112
A
GLY
113
n
116
GLY
113
A
GLY
114
n
117
GLY
114
A
HIS
115
n
118
HIS
115
A
ASN
116
n
119
ASN
116
A
GLY
117
n
120
GLY
117
A
LEU
118
n
121
LEU
118
A
ARG
119
n
122
ARG
119
A
ASP
120
n
123
ASP
120
A
ILE
121
n
124
ILE
121
A
VAL
122
n
125
VAL
122
A
PRO
123
n
126
PRO
123
A
HIS
124
n
127
HIS
124
A
ILE
125
n
128
ILE
125
A
GLY
126
n
129
GLY
126
A
PRO
127
n
130
PRO
127
A
ASN
128
n
131
ASN
128
A
PHE
129
n
132
PHE
129
A
HIS
130
n
133
HIS
130
A
ARG
131
n
134
ARG
131
A
LEU
132
n
135
LEU
132
A
ARG
133
n
136
ARG
133
A
ILE
134
n
137
ILE
134
A
GLY
135
n
138
GLY
135
A
ILE
136
n
139
ILE
136
A
GLY
137
n
140
GLY
137
A
HIS
138
n
141
HIS
138
A
PRO
139
n
142
PRO
139
A
GLY
140
n
143
GLY
140
A
SER
141
n
144
SER
141
A
LYS
142
n
145
LYS
142
A
GLU
143
n
146
GLU
143
A
ARG
144
n
147
ARG
144
A
VAL
145
n
148
VAL
145
A
SER
146
n
149
SER
146
A
GLY
147
n
150
GLY
147
A
HIS
148
n
151
HIS
148
A
VAL
149
n
152
VAL
149
A
LEU
150
n
153
LEU
150
A
GLY
151
n
154
GLY
151
A
LYS
152
n
155
LYS
152
A
ALA
153
n
156
ALA
153
A
PRO
154
n
157
PRO
154
A
SER
155
n
158
SER
155
A
ASN
156
n
159
ASN
156
A
GLU
157
n
160
GLU
157
A
GLN
158
n
161
GLN
158
A
SER
159
n
162
SER
159
A
LEU
160
n
163
LEU
160
A
MET
161
n
164
MET
161
A
ASP
162
n
165
ASP
162
A
GLY
163
n
166
GLY
163
A
ALA
164
n
167
ALA
164
A
ILE
165
n
168
ILE
165
A
ASP
166
n
169
ASP
166
A
HIS
167
n
170
HIS
167
A
ALA
168
n
171
ALA
168
A
LEU
169
n
172
LEU
169
A
SER
170
n
173
SER
170
A
LYS
171
n
174
LYS
171
A
VAL
172
n
175
VAL
172
A
LYS
173
n
176
LYS
173
A
LEU
174
n
177
LEU
174
A
LEU
175
n
178
LEU
175
A
VAL
176
n
179
VAL
176
A
GLN
177
n
180
GLN
177
A
GLY
178
n
181
GLY
178
A
GLN
179
n
182
GLN
179
A
VAL
180
n
183
VAL
180
A
PRO
181
n
184
PRO
181
A
GLN
182
n
185
GLN
182
A
ALA
183
n
186
ALA
183
A
MET
184
n
187
MET
184
A
ASN
185
n
188
ASN
185
A
GLN
186
n
189
GLN
186
A
ILE
187
n
190
ILE
187
A
ASN
188
n
191
ASN
188
A
ALA
189
n
192
ALA
189
A
TYR
190
n
193
TYR
190
A
LYS
191
n
194
LYS
191
A
PRO
192
n
195
PRO
192
A
ALA
193
n
196
ALA
193
A
author_defined_assembly
1
monomeric
none
220
4
8900
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
41
A
N
LYS
44
A
O
SER
50
A
O
SER
53
A
N
ILE
49
A
N
ILE
52
A
O
LEU
64
A
O
LEU
67
A
O
ARG
61
A
O
ARG
64
A
N
ILE
7
A
N
ILE
10
A
N
VAL
8
A
N
VAL
11
A
O
ALA
93
A
O
ALA
96
A
N
HIS
94
A
N
HIS
97
A
O
ILE
134
A
O
ILE
137
A
O
ARG
133
A
O
ARG
136
A
N
ARG
105
A
N
ARG
108
1
A
ASN
42
0.078
SIDE CHAIN
1
A
MET
1
59.04
-138.96
1
A
TYR
68
78.48
150.14
1
A
ASN
128
-84.90
35.08
13.367
0.00
-0.00
-0.00
-0.27
0.00
0.27
0.971
0.955
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19464
0.15447
0.15634
1.43
38.19
1564
29927
5.0
96.02
1.022
0.039
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.063
0.069
0.80
0.80
1.20
5Y9A
1.43
38.19
249
1747
4
0
1494
0.014
0.013
1540
0.001
0.017
1420
1.828
1.632
2078
1.773
1.575
3313
6.249
5.000
195
33.423
22.821
78
13.028
15.000
258
13.205
15.000
8
0.101
0.200
189
0.012
0.020
1749
0.002
0.020
303
1.246
1.144
783
1.197
1.141
782
1.836
1.712
977
1.844
1.714
978
2.446
1.421
757
2.445
1.422
758
3.682
2.012
1102
5.540
16.233
1765
5.354
15.175
1710
0.362
0.347
1.467
126
2168
20
95.27
1.43
38.19
6IX6
32796
0.84
0.075
1
9.11
3.6
93.7
1.43
1.55
1
refinement
REFMAC
5.8.0238
data reduction
XDS
data scaling
XSCALE
phasing
MOLREP
N
Crystal structure of the complex of peptidyl-tRNA hydrolase with N-propanol at 1.43 A resolution
1
N
N
2
N
N
3
N
N
A
THR
20
A
THR
23
HELX_P
A
HIS
22
A
HIS
25
5
AA1
3
A
ASN
23
A
ASN
26
HELX_P
A
GLY
37
A
GLY
40
1
AA2
15
A
PRO
44
A
PRO
47
HELX_P
A
PHE
46
A
PHE
49
5
AA3
3
A
TYR
68
A
TYR
71
HELX_P
A
LYS
71
A
LYS
74
5
AA4
4
A
SER
72
A
SER
75
HELX_P
A
TYR
83
A
TYR
86
1
AA5
12
A
ALA
86
A
ALA
89
HELX_P
A
GLU
88
A
GLU
91
5
AA6
3
A
HIS
115
A
HIS
118
HELX_P
A
ASP
120
A
ASP
123
1
AA7
6
A
ILE
121
A
ILE
124
HELX_P
A
GLY
126
A
GLY
129
1
AA8
6
A
SER
141
A
SER
144
HELX_P
A
GLU
143
A
GLU
146
5
AA9
3
A
ARG
144
A
ARG
147
HELX_P
A
LEU
150
A
LEU
153
1
AB1
7
A
PRO
154
A
PRO
157
HELX_P
A
SER
170
A
SER
173
1
AB2
17
A
LYS
171
A
LYS
174
HELX_P
A
GLN
177
A
GLN
180
1
AB3
7
A
GLN
179
A
GLN
182
HELX_P
A
ALA
189
A
ALA
192
1
AB4
11
HYDROLASE
HYDROLASE
D0C9L6_ACIB2
UNP
1
1
D0C9L6
MSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFS
KFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL
MDGAIDHALSKVKLLVQGQVPQAMNQINAYKPA
1
193
6IX6
1
193
D0C9L6
A
1
4
196
1
expression tag
GLY
-2
6IX6
A
D0C9L6
UNP
1
1
expression tag
SER
-1
6IX6
A
D0C9L6
UNP
2
1
expression tag
HIS
0
6IX6
A
D0C9L6
UNP
3
1
ARG
engineered mutation
LYS
71
6IX6
A
D0C9L6
UNP
71
74
7
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
A
LYS
41
A
LYS
44
A
ASP
43
A
ASP
46
A
GLY
48
A
GLY
51
A
ILE
55
A
ILE
58
A
HIS
58
A
HIS
61
A
PRO
65
A
PRO
68
A
LEU
6
A
LEU
9
A
GLY
9
A
GLY
12
A
ILE
90
A
ILE
93
A
GLU
96
A
GLU
99
A
HIS
130
A
HIS
133
A
GLY
135
A
GLY
138
A
ILE
104
A
ILE
107
A
THR
108
A
THR
111
binding site for residue POL A 201
A
POL
201
Software
4
A
ASN
12
A
ASN
15
4
1_555
A
HIS
22
A
HIS
25
4
1_555
A
MET
69
A
MET
72
4
1_555
A
ASN
70
A
ASN
73
4
1_555
19
P 21 21 21