1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-5368-706X Lam, S.L. 0000-0001-7760-5786 Guo, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking Na 1 22.990 SODIUM ION non-polymer US J.Biomol.Struct.Dyn. JBSDD6 0646 1538-0254 38 1946 1953 10.1080/07391102.2019.1621211 31107180 Unprecedented hydrophobic stabilizations from a reverse wobble T·T mispair in DNA minidumbbell. 2020 2408.589 DNA (5'-D(*CP*TP*TP*GP*CP*TP*TP*G)-3') 1 syn polymer 22.990 SODIUM ION 7 syn non-polymer no no (DC)(DT)(DT)(DG)(DC)(DT)(DT)(DG) CTTGCTTG A polydeoxyribonucleotide n n n n n n n n -5.374 1 19 A 1 A 4 1.575 A_DC1:DG4_A 1 11.030 -0.876 -0.165 -0.195 18.672 1 19 A 8 A 5 0.670 A_DG8:DC5_A 2 4.933 -0.147 0.265 0.079 -23.289 2 12 A 2 A 6 167.383 A_DT2:DT6_A 3 13.257 2.095 -1.444 -0.704 2.623 13.342 A A 1 8 -18.581 A A 4 5 2.799 -4.134 -0.107 -0.440 AA_DC1DG8:DC5DG4_AA 1 -5.019 22.557 11.656 1.951 -4.208 citation citation_author citation citation pdbx_nmr_spectrometer repository Initial release Data collection Database references Data collection Database references Data collection Database references 1 0 2019-05-29 1 1 2019-06-05 1 2 2019-06-12 1 3 2020-04-22 _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _citation_author.identifier_ORCID _citation.page_last _citation.title _citation.journal_volume _citation.page_first _citation.page_last _citation.year _pdbx_nmr_spectrometer.model DNA minidumbbell structure of two CTTG repeats N PDBJ Y PDBJ 2019-01-04 REL REL REL NA SODIUM ION 9606 Homo sapiens sample 1 8 structures with the least restraint violations 1000 20 isotropic 2 2D 1H-1H NOESY isotropic 2 2D 1H-1H TOCSY isotropic 1 2D DQF-COSY 1 mM No labeling 10 mM No labeling 0.02 mM No labeling 10 0.1 mM condition_1 7.0 0.1 pH 1 0.01 bar 273 0.1 K not applicable 1 least restraint violation 1 mM No labeling DNA, 10 mM No labeling sodium phosphate, 0.02 mM No labeling DSS, 99.96% D2O No labeling 99.96% D2O solution Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman structure calculation Amber Bruker Biospin chemical shift assignment TopSpin 500 Bruker AVANCE 700 Bruker AVANCE NA 9 2 NA NA 101 A NA 10 2 NA NA 102 A NA 11 2 NA NA 103 A NA 12 2 NA NA 104 A NA 13 2 NA NA 105 A NA 14 2 NA NA 106 A NA 15 2 NA NA 107 A DC 1 n 1 DC 1 A DT 2 n 2 DT 2 A DT 3 n 3 DT 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DG 8 n 8 DG 8 A author_defined_assembly 1 monomeric none 790 -60 1590 A DT 2 A OP1 DT 2 1_555 A NA 107 H NA NA 1_555 A DT 2 A OP2 DT 2 1_555 58.7 A DC 5 A OP1 DC 5 1_555 A NA 101 B NA NA 1_555 A DC 5 A O3' DC 5 1_555 122.1 A DT 7 A OP1 DT 7 1_555 A NA 105 F NA NA 1_555 A DG 8 A OP1 DG 8 1_555 97.2 A DT 7 A O5' DT 7 1_555 A NA 102 C NA NA 1_555 A DG 8 A OP1 DG 8 1_555 73.6 A DT 7 A O5' DT 7 1_555 A NA 102 C NA NA 1_555 A DG 8 A O5' DG 8 1_555 95.6 A DG 8 A OP1 DG 8 1_555 A NA 102 C NA NA 1_555 A DG 8 A O5' DG 8 1_555 56.1 A DT 7 A O2 DT 7 1_555 A NA 106 G NA NA 1_555 A DG 8 A O6 DG 8 1_555 77.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 1 0.096 SIDE CHAIN 1 A DG 4 0.200 SIDE CHAIN 1 A DT 6 0.064 SIDE CHAIN 1 A DT 7 0.075 SIDE CHAIN 2 A DC 1 0.106 SIDE CHAIN 2 A DT 2 0.063 SIDE CHAIN 2 A DT 3 0.060 SIDE CHAIN 2 A DG 4 0.205 SIDE CHAIN 3 A DC 1 0.108 SIDE CHAIN 3 A DT 2 0.062 SIDE CHAIN 3 A DG 4 0.206 SIDE CHAIN 4 A DC 1 0.086 SIDE CHAIN 4 A DT 2 0.068 SIDE CHAIN 4 A DG 4 0.208 SIDE CHAIN 4 A DT 7 0.059 SIDE CHAIN 5 A DC 1 0.062 SIDE CHAIN 5 A DT 2 0.066 SIDE CHAIN 5 A DG 4 0.197 SIDE CHAIN 5 A DT 7 0.081 SIDE CHAIN 6 A DC 1 0.077 SIDE CHAIN 6 A DT 2 0.068 SIDE CHAIN 6 A DG 4 0.212 SIDE CHAIN 7 A DC 1 0.120 SIDE CHAIN 7 A DG 4 0.209 SIDE CHAIN 7 A DG 8 0.059 SIDE CHAIN 8 A DC 1 0.074 SIDE CHAIN 8 A DT 2 0.066 SIDE CHAIN 8 A DG 4 0.210 SIDE CHAIN 8 A DT 7 0.060 SIDE CHAIN 9 A DC 1 0.132 SIDE CHAIN 9 A DT 3 0.063 SIDE CHAIN 9 A DG 4 0.207 SIDE CHAIN 9 A DG 8 0.066 SIDE CHAIN 10 A DC 1 0.075 SIDE CHAIN 10 A DG 4 0.216 SIDE CHAIN 11 A DC 1 0.066 SIDE CHAIN 11 A DT 2 0.062 SIDE CHAIN 11 A DG 4 0.215 SIDE CHAIN 11 A DT 7 0.061 SIDE CHAIN 12 A DC 1 0.061 SIDE CHAIN 12 A DG 4 0.210 SIDE CHAIN 12 A DT 6 0.074 SIDE CHAIN 13 A DC 1 0.120 SIDE CHAIN 13 A DG 4 0.213 SIDE CHAIN 13 A DG 8 0.061 SIDE CHAIN 14 A DC 1 0.101 SIDE CHAIN 14 A DG 4 0.206 SIDE CHAIN 14 A DT 7 0.062 SIDE CHAIN 15 A DC 1 0.066 SIDE CHAIN 15 A DT 2 0.060 SIDE CHAIN 15 A DG 4 0.198 SIDE CHAIN 15 A DT 7 0.080 SIDE CHAIN 16 A DC 1 0.110 SIDE CHAIN 16 A DG 4 0.209 SIDE CHAIN 16 A DT 7 0.057 SIDE CHAIN 17 A DC 1 0.072 SIDE CHAIN 17 A DT 2 0.073 SIDE CHAIN 17 A DG 4 0.213 SIDE CHAIN 18 A DC 1 0.068 SIDE CHAIN 18 A DT 2 0.071 SIDE CHAIN 18 A DG 4 0.213 SIDE CHAIN 19 A DC 1 0.071 SIDE CHAIN 19 A DT 2 0.075 SIDE CHAIN 19 A DG 4 0.198 SIDE CHAIN 19 A DT 7 0.071 SIDE CHAIN 20 A DC 1 0.066 SIDE CHAIN 20 A DG 4 0.216 SIDE CHAIN 20 A DT 7 0.062 SIDE CHAIN 1 3.11 0.30 108.30 111.41 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 2.96 0.30 108.30 111.26 A A A O4' C1' N1 DT DT DT 2 2 2 N 1 -3.99 0.60 122.90 118.91 A A A C6 C5 C7 DT DT DT 2 2 2 N 1 8.07 1.20 119.70 127.77 A A A C3' O3' P DT DT DT 2 2 3 Y 1 2.82 0.30 108.30 111.12 A A A O4' C1' N1 DT DT DT 3 3 3 N 1 -3.81 0.60 122.90 119.09 A A A C6 C5 C7 DT DT DT 3 3 3 N 1 6.21 0.30 108.30 114.51 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 6.07 0.30 108.30 114.37 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 -4.79 0.60 122.90 118.11 A A A C6 C5 C7 DT DT DT 7 7 7 N 1 1.98 0.30 108.30 110.28 A A A O4' C1' N9 DG DG DG 8 8 8 N 2 3.03 0.30 108.30 111.33 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 7.55 1.20 119.70 127.25 A A A C3' O3' P DC DC DT 1 1 2 Y 2 3.85 0.30 108.30 112.15 A A A O4' C1' N1 DT DT DT 2 2 2 N 2 -3.88 0.60 122.90 119.02 A A A C6 C5 C7 DT DT DT 2 2 2 N 2 7.96 1.20 119.70 127.66 A A A C3' O3' P DT DT DT 2 2 3 Y 2 2.48 0.30 108.30 110.78 A A A O4' C1' N1 DT DT DT 3 3 3 N 2 -3.95 0.60 122.90 118.95 A A A C6 C5 C7 DT DT DT 3 3 3 N 2 6.24 0.30 108.30 114.54 A A A O4' C1' N9 DG DG DG 4 4 4 N 2 4.19 0.30 108.30 112.49 A A A O4' C1' N1 DT DT DT 6 6 6 N 2 -4.17 0.60 122.90 118.73 A A A C6 C5 C7 DT DT DT 6 6 6 N 2 -4.89 0.60 122.90 118.01 A A A C6 C5 C7 DT DT DT 7 7 7 N 2 1.93 0.30 108.30 110.23 A A A O4' C1' N9 DG DG DG 8 8 8 N 3 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 7.60 1.20 119.70 127.30 A A A C3' O3' P DC DC DT 1 1 2 Y 3 4.12 0.30 108.30 112.42 A A A O4' C1' N1 DT DT DT 2 2 2 N 3 -3.62 0.60 122.90 119.28 A A A C6 C5 C7 DT DT DT 2 2 2 N 3 7.83 1.20 119.70 127.53 A A A C3' O3' P DT DT DT 2 2 3 Y 3 2.67 0.30 108.30 110.97 A A A O4' C1' N1 DT DT DT 3 3 3 N 3 -4.03 0.60 122.90 118.87 A A A C6 C5 C7 DT DT DT 3 3 3 N 3 6.42 0.30 108.30 114.72 A A A O4' C1' N9 DG DG DG 4 4 4 N 3 3.95 0.30 108.30 112.25 A A A O4' C1' N1 DT DT DT 6 6 6 N 3 -4.14 0.60 122.90 118.76 A A A C6 C5 C7 DT DT DT 6 6 6 N 3 -5.28 0.60 122.90 117.62 A A A C6 C5 C7 DT DT DT 7 7 7 N 3 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DG DG DG 8 8 8 N 4 2.11 0.30 108.30 110.41 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 3.84 0.30 108.30 112.14 A A A O4' C1' N1 DT DT DT 2 2 2 N 4 -3.76 0.60 122.90 119.14 A A A C6 C5 C7 DT DT DT 2 2 2 N 4 7.60 1.20 119.70 127.30 A A A C3' O3' P DT DT DT 2 2 3 Y 4 2.86 0.30 108.30 111.16 A A A O4' C1' N1 DT DT DT 3 3 3 N 4 -4.21 0.60 122.90 118.69 A A A C6 C5 C7 DT DT DT 3 3 3 N 4 6.08 0.30 108.30 114.38 A A A O4' C1' N9 DG DG DG 4 4 4 N 4 4.58 0.30 108.30 112.88 A A A O4' C1' N1 DT DT DT 6 6 6 N 4 -3.92 0.60 122.90 118.98 A A A C6 C5 C7 DT DT DT 6 6 6 N 4 -4.87 0.60 122.90 118.03 A A A C6 C5 C7 DT DT DT 7 7 7 N 5 3.17 0.30 108.30 111.47 A A A O4' C1' N1 DT DT DT 2 2 2 N 5 -4.05 0.60 122.90 118.85 A A A C6 C5 C7 DT DT DT 2 2 2 N 5 7.80 1.20 119.70 127.50 A A A C3' O3' P DT DT DT 2 2 3 Y 5 2.95 0.30 108.30 111.25 A A A O4' C1' N1 DT DT DT 3 3 3 N 5 -4.09 0.60 122.90 118.81 A A A C6 C5 C7 DT DT DT 3 3 3 N 5 6.08 0.30 108.30 114.38 A A A O4' C1' N9 DG DG DG 4 4 4 N 5 5.27 0.30 108.30 113.57 A A A O4' C1' N1 DT DT DT 6 6 6 N 5 -5.27 0.60 122.90 117.63 A A A C6 C5 C7 DT DT DT 7 7 7 N 6 2.20 0.30 108.30 110.50 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 3.03 0.30 108.30 111.33 A A A O4' C1' N1 DT DT DT 2 2 2 N 6 -4.14 0.60 122.90 118.76 A A A C6 C5 C7 DT DT DT 2 2 2 N 6 7.60 1.20 119.70 127.30 A A A C3' O3' P DT DT DT 2 2 3 Y 6 3.10 0.30 108.30 111.40 A A A O4' C1' N1 DT DT DT 3 3 3 N 6 -4.21 0.60 122.90 118.69 A A A C6 C5 C7 DT DT DT 3 3 3 N 6 6.16 0.30 108.30 114.46 A A A O4' C1' N9 DG DG DG 4 4 4 N 6 4.88 0.30 108.30 113.18 A A A O4' C1' N1 DT DT DT 6 6 6 N 6 -3.74 0.60 122.90 119.16 A A A C6 C5 C7 DT DT DT 6 6 6 N 6 -4.91 0.60 122.90 117.99 A A A C6 C5 C7 DT DT DT 7 7 7 N 6 1.85 0.30 108.30 110.15 A A A O4' C1' N9 DG DG DG 8 8 8 N 7 2.39 0.30 108.30 110.69 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 3.08 0.30 108.30 111.38 A A A O4' C1' N1 DT DT DT 2 2 2 N 7 -4.00 0.60 122.90 118.90 A A A C6 C5 C7 DT DT DT 2 2 2 N 7 7.97 1.20 119.70 127.67 A A A C3' O3' P DT DT DT 2 2 3 Y 7 3.04 0.30 108.30 111.34 A A A O4' C1' N1 DT DT DT 3 3 3 N 7 -3.90 0.60 122.90 119.00 A A A C6 C5 C7 DT DT DT 3 3 3 N 7 3.70 0.60 106.00 109.70 A A A O4' C4' C3' DG DG DG 4 4 4 N 7 6.46 0.30 108.30 114.76 A A A O4' C1' N9 DG DG DG 4 4 4 N 7 4.26 0.30 108.30 112.56 A A A O4' C1' N1 DT DT DT 6 6 6 N 7 -3.84 0.60 122.90 119.06 A A A C6 C5 C7 DT DT DT 6 6 6 N 7 -4.96 0.60 122.90 117.94 A A A C6 C5 C7 DT DT DT 7 7 7 N 7 1.82 0.30 108.30 110.12 A A A O4' C1' N9 DG DG DG 8 8 8 N 8 3.56 0.30 108.30 111.86 A A A O4' C1' N1 DT DT DT 2 2 2 N 8 -3.72 0.60 122.90 119.18 A A A C6 C5 C7 DT DT DT 2 2 2 N 8 7.43 1.20 119.70 127.13 A A A C3' O3' P DT DT DT 2 2 3 Y 8 3.00 0.30 108.30 111.30 A A A O4' C1' N1 DT DT DT 3 3 3 N 8 -4.30 0.60 122.90 118.60 A A A C6 C5 C7 DT DT DT 3 3 3 N 8 6.09 0.30 108.30 114.39 A A A O4' C1' N9 DG DG DG 4 4 4 N 8 4.30 0.30 108.30 112.60 A A A O4' C1' N1 DT DT DT 6 6 6 N 8 -3.92 0.60 122.90 118.98 A A A C6 C5 C7 DT DT DT 6 6 6 N 8 -5.48 0.60 122.90 117.42 A A A C6 C5 C7 DT DT DT 7 7 7 N 9 3.23 0.30 108.30 111.53 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 3.71 0.30 108.30 112.01 A A A O4' C1' N1 DT DT DT 2 2 2 N 9 -3.66 0.60 122.90 119.24 A A A C6 C5 C7 DT DT DT 2 2 2 N 9 7.82 1.20 119.70 127.52 A A A C3' O3' P DT DT DT 2 2 3 Y 9 2.70 0.30 108.30 111.00 A A A O4' C1' N1 DT DT DT 3 3 3 N 9 -4.09 0.60 122.90 118.81 A A A C6 C5 C7 DT DT DT 3 3 3 N 9 3.67 0.60 106.00 109.67 A A A O4' C4' C3' DG DG DG 4 4 4 N 9 6.40 0.30 108.30 114.70 A A A O4' C1' N9 DG DG DG 4 4 4 N 9 3.78 0.30 108.30 112.08 A A A O4' C1' N1 DT DT DT 6 6 6 N 9 -4.06 0.60 122.90 118.84 A A A C6 C5 C7 DT DT DT 6 6 6 N 9 -5.54 0.60 122.90 117.36 A A A C6 C5 C7 DT DT DT 7 7 7 N 10 2.06 0.30 108.30 110.36 A A A O4' C1' N1 DC DC DC 1 1 1 N 10 3.14 0.30 108.30 111.44 A A A O4' C1' N1 DT DT DT 2 2 2 N 10 -3.97 0.60 122.90 118.93 A A A C6 C5 C7 DT DT DT 2 2 2 N 10 7.63 1.20 119.70 127.33 A A A C3' O3' P DT DT DT 2 2 3 Y 10 2.78 0.30 108.30 111.08 A A A O4' C1' N1 DT DT DT 3 3 3 N 10 -4.33 0.60 122.90 118.57 A A A C6 C5 C7 DT DT DT 3 3 3 N 10 6.38 0.30 108.30 114.68 A A A O4' C1' N9 DG DG DG 4 4 4 N 10 5.29 0.30 108.30 113.59 A A A O4' C1' N1 DT DT DT 6 6 6 N 10 -3.79 0.60 122.90 119.11 A A A C6 C5 C7 DT DT DT 6 6 6 N 10 -4.84 0.60 122.90 118.06 A A A C6 C5 C7 DT DT DT 7 7 7 N 10 1.97 0.30 108.30 110.27 A A A O4' C1' N9 DG DG DG 8 8 8 N 11 3.39 0.30 108.30 111.69 A A A O4' C1' N1 DT DT DT 2 2 2 N 11 -4.01 0.60 122.90 118.89 A A A C6 C5 C7 DT DT DT 2 2 2 N 11 7.58 1.20 119.70 127.28 A A A C3' O3' P DT DT DT 2 2 3 Y 11 2.71 0.30 108.30 111.01 A A A O4' C1' N1 DT DT DT 3 3 3 N 11 -4.30 0.60 122.90 118.60 A A A C6 C5 C7 DT DT DT 3 3 3 N 11 6.15 0.30 108.30 114.45 A A A O4' C1' N9 DG DG DG 4 4 4 N 11 4.66 0.30 108.30 112.96 A A A O4' C1' N1 DT DT DT 6 6 6 N 11 -3.85 0.60 122.90 119.05 A A A C6 C5 C7 DT DT DT 6 6 6 N 11 -5.04 0.60 122.90 117.86 A A A C6 C5 C7 DT DT DT 7 7 7 N 11 1.84 0.30 108.30 110.14 A A A O4' C1' N9 DG DG DG 8 8 8 N 12 2.16 0.30 108.30 110.46 A A A O4' C1' N1 DC DC DC 1 1 1 N 12 3.04 0.30 108.30 111.34 A A A O4' C1' N1 DT DT DT 2 2 2 N 12 -4.14 0.60 122.90 118.76 A A A C6 C5 C7 DT DT DT 2 2 2 N 12 7.56 1.20 119.70 127.26 A A A C3' O3' P DT DT DT 2 2 3 Y 12 3.14 0.30 108.30 111.44 A A A O4' C1' N1 DT DT DT 3 3 3 N 12 -3.91 0.60 122.90 118.99 A A A C6 C5 C7 DT DT DT 3 3 3 N 12 6.67 0.30 108.30 114.97 A A A O4' C1' N9 DG DG DG 4 4 4 N 12 5.82 0.30 108.30 114.12 A A A O4' C1' N1 DT DT DT 6 6 6 N 12 9.15 1.20 119.70 128.85 A A A C3' O3' P DT DT DT 6 6 7 Y 12 2.48 0.30 108.30 110.78 A A A O4' C1' N1 DT DT DT 7 7 7 N 12 2.09 0.30 108.30 110.39 A A A O4' C1' N9 DG DG DG 8 8 8 N 13 3.39 0.30 108.30 111.69 A A A O4' C1' N1 DC DC DC 1 1 1 N 13 3.13 0.30 108.30 111.43 A A A O4' C1' N1 DT DT DT 2 2 2 N 13 -3.95 0.60 122.90 118.95 A A A C6 C5 C7 DT DT DT 2 2 2 N 13 8.02 1.20 119.70 127.72 A A A C3' O3' P DT DT DT 2 2 3 Y 13 3.03 0.30 108.30 111.33 A A A O4' C1' N1 DT DT DT 3 3 3 N 13 -3.78 0.60 122.90 119.12 A A A C6 C5 C7 DT DT DT 3 3 3 N 13 3.63 0.60 106.00 109.63 A A A O4' C4' C3' DG DG DG 4 4 4 N 13 6.43 0.30 108.30 114.73 A A A O4' C1' N9 DG DG DG 4 4 4 N 13 4.25 0.30 108.30 112.55 A A A O4' C1' N1 DT DT DT 6 6 6 N 13 -3.83 0.60 122.90 119.07 A A A C6 C5 C7 DT DT DT 6 6 6 N 13 -4.84 0.60 122.90 118.06 A A A C6 C5 C7 DT DT DT 7 7 7 N 13 1.99 0.30 108.30 110.29 A A A O4' C1' N9 DG DG DG 8 8 8 N 14 2.31 0.30 108.30 110.61 A A A O4' C1' N1 DC DC DC 1 1 1 N 14 7.55 1.20 119.70 127.25 A A A C3' O3' P DC DC DT 1 1 2 Y 14 3.44 0.30 108.30 111.74 A A A O4' C1' N1 DT DT DT 2 2 2 N 14 -3.87 0.60 122.90 119.03 A A A C6 C5 C7 DT DT DT 2 2 2 N 14 7.80 1.20 119.70 127.50 A A A C3' O3' P DT DT DT 2 2 3 Y 14 2.91 0.30 108.30 111.21 A A A O4' C1' N1 DT DT DT 3 3 3 N 14 -3.84 0.60 122.90 119.06 A A A C6 C5 C7 DT DT DT 3 3 3 N 14 6.15 0.30 108.30 114.45 A A A O4' C1' N9 DG DG DG 4 4 4 N 14 3.93 0.30 108.30 112.23 A A A O4' C1' N1 DT DT DT 6 6 6 N 14 -3.87 0.60 122.90 119.03 A A A C6 C5 C7 DT DT DT 6 6 6 N 14 -5.38 0.60 122.90 117.52 A A A C6 C5 C7 DT DT DT 7 7 7 N 15 3.21 0.30 108.30 111.51 A A A O4' C1' N1 DT DT DT 2 2 2 N 15 -3.87 0.60 122.90 119.03 A A A C6 C5 C7 DT DT DT 2 2 2 N 15 7.35 1.20 119.70 127.05 A A A C3' O3' P DT DT DT 2 2 3 Y 15 3.18 0.30 108.30 111.48 A A A O4' C1' N1 DT DT DT 3 3 3 N 15 -4.13 0.60 122.90 118.77 A A A C6 C5 C7 DT DT DT 3 3 3 N 15 6.13 0.30 108.30 114.43 A A A O4' C1' N9 DG DG DG 4 4 4 N 15 5.32 0.30 108.30 113.62 A A A O4' C1' N1 DT DT DT 6 6 6 N 15 -5.26 0.60 122.90 117.64 A A A C6 C5 C7 DT DT DT 7 7 7 N 15 1.83 0.30 108.30 110.13 A A A O4' C1' N9 DG DG DG 8 8 8 N 16 2.51 0.30 108.30 110.81 A A A O4' C1' N1 DC DC DC 1 1 1 N 16 7.44 1.20 119.70 127.14 A A A C3' O3' P DC DC DT 1 1 2 Y 16 3.18 0.30 108.30 111.48 A A A O4' C1' N1 DT DT DT 2 2 2 N 16 -4.00 0.60 122.90 118.90 A A A C6 C5 C7 DT DT DT 2 2 2 N 16 7.93 1.20 119.70 127.63 A A A C3' O3' P DT DT DT 2 2 3 Y 16 3.21 0.30 108.30 111.51 A A A O4' C1' N1 DT DT DT 3 3 3 N 16 -4.03 0.60 122.90 118.87 A A A C6 C5 C7 DT DT DT 3 3 3 N 16 6.24 0.30 108.30 114.54 A A A O4' C1' N9 DG DG DG 4 4 4 N 16 4.43 0.30 108.30 112.73 A A A O4' C1' N1 DT DT DT 6 6 6 N 16 -3.67 0.60 122.90 119.23 A A A C6 C5 C7 DT DT DT 6 6 6 N 16 -5.30 0.60 122.90 117.60 A A A C6 C5 C7 DT DT DT 7 7 7 N 16 1.95 0.30 108.30 110.25 A A A O4' C1' N9 DG DG DG 8 8 8 N 17 3.47 0.30 108.30 111.77 A A A O4' C1' N1 DT DT DT 2 2 2 N 17 -3.95 0.60 122.90 118.95 A A A C6 C5 C7 DT DT DT 2 2 2 N 17 7.55 1.20 119.70 127.25 A A A C3' O3' P DT DT DT 2 2 3 Y 17 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DT DT DT 3 3 3 N 17 -4.22 0.60 122.90 118.68 A A A C6 C5 C7 DT DT DT 3 3 3 N 17 6.08 0.30 108.30 114.38 A A A O4' C1' N9 DG DG DG 4 4 4 N 17 4.83 0.30 108.30 113.13 A A A O4' C1' N1 DT DT DT 6 6 6 N 17 -3.74 0.60 122.90 119.16 A A A C6 C5 C7 DT DT DT 6 6 6 N 17 -4.78 0.60 122.90 118.12 A A A C6 C5 C7 DT DT DT 7 7 7 N 17 2.00 0.30 108.30 110.30 A A A O4' C1' N9 DG DG DG 8 8 8 N 18 3.44 0.30 108.30 111.74 A A A O4' C1' N1 DT DT DT 2 2 2 N 18 -3.96 0.60 122.90 118.94 A A A C6 C5 C7 DT DT DT 2 2 2 N 18 7.45 1.20 119.70 127.15 A A A C3' O3' P DT DT DT 2 2 3 Y 18 3.04 0.30 108.30 111.34 A A A O4' C1' N1 DT DT DT 3 3 3 N 18 -4.15 0.60 122.90 118.75 A A A C6 C5 C7 DT DT DT 3 3 3 N 18 5.94 0.30 108.30 114.24 A A A O4' C1' N9 DG DG DG 4 4 4 N 18 4.77 0.30 108.30 113.07 A A A O4' C1' N1 DT DT DT 6 6 6 N 18 -3.82 0.60 122.90 119.08 A A A C6 C5 C7 DT DT DT 6 6 6 N 18 -4.85 0.60 122.90 118.05 A A A C6 C5 C7 DT DT DT 7 7 7 N 19 2.22 0.30 108.30 110.52 A A A O4' C1' N1 DC DC DC 1 1 1 N 19 3.97 0.30 108.30 112.27 A A A O4' C1' N1 DT DT DT 2 2 2 N 19 7.49 1.20 119.70 127.19 A A A C3' O3' P DT DT DT 2 2 3 Y 19 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DT DT DT 3 3 3 N 19 -4.07 0.60 122.90 118.83 A A A C6 C5 C7 DT DT DT 3 3 3 N 19 6.02 0.30 108.30 114.32 A A A O4' C1' N9 DG DG DG 4 4 4 N 19 4.74 0.30 108.30 113.04 A A A O4' C1' N1 DT DT DT 6 6 6 N 19 -4.79 0.60 122.90 118.11 A A A C6 C5 C7 DT DT DT 7 7 7 N 20 3.06 0.30 108.30 111.36 A A A O4' C1' N1 DT DT DT 2 2 2 N 20 -3.80 0.60 122.90 119.10 A A A C6 C5 C7 DT DT DT 2 2 2 N 20 7.63 1.20 119.70 127.33 A A A C3' O3' P DT DT DT 2 2 3 Y 20 2.75 0.30 108.30 111.05 A A A O4' C1' N1 DT DT DT 3 3 3 N 20 -4.30 0.60 122.90 118.60 A A A C6 C5 C7 DT DT DT 3 3 3 N 20 6.13 0.30 108.30 114.43 A A A O4' C1' N9 DG DG DG 4 4 4 N 20 4.73 0.30 108.30 113.03 A A A O4' C1' N1 DT DT DT 6 6 6 N 20 -3.89 0.60 122.90 119.01 A A A C6 C5 C7 DT DT DT 6 6 6 N 20 -4.98 0.60 122.90 117.92 A A A C6 C5 C7 DT DT DT 7 7 7 N N DNA (5'-D(*CP*TP*TP*GP*CP*TP*TP*G)-3') DNA minidumbbell structure of two CTTG repeats 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N metalc 2.579 A DT 2 A OP1 DT 2 1_555 A NA 107 H NA NA 1_555 metalc 2.592 A DT 2 A OP2 DT 2 1_555 A NA 107 H NA NA 1_555 metalc 2.503 A DG 4 A OP1 DG 4 1_555 A NA 103 D NA NA 1_555 metalc 2.613 A DC 5 A OP1 DC 5 1_555 A NA 101 B NA NA 1_555 metalc 2.494 A DC 5 A OP2 DC 5 1_555 A NA 104 E NA NA 1_555 metalc 2.931 A DC 5 A O3' DC 5 1_555 A NA 101 B NA NA 1_555 metalc 2.486 A DT 7 A OP1 DT 7 1_555 A NA 105 F NA NA 1_555 metalc 2.655 A DT 7 A O5' DT 7 1_555 A NA 102 C NA NA 1_555 metalc 2.606 A DT 7 A O2 DT 7 1_555 A NA 106 G NA NA 1_555 metalc 2.517 A DG 8 A OP1 DG 8 1_555 A NA 102 C NA NA 1_555 metalc 2.502 A DG 8 A OP1 DG 8 1_555 A NA 105 F NA NA 1_555 metalc 2.779 A DG 8 A O5' DG 8 1_555 A NA 102 C NA NA 1_555 metalc 2.568 A DG 8 A O6 DG 8 1_555 A NA 106 G NA NA 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 4 A N1 DG 4 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 4 A O6 DG 4 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 4 A N2 DG 4 1_555 hydrog TYPE_12_PAIR A DT 2 A N3 DT 2 1_555 A DT 6 A O4 DT 6 1_555 hydrog TYPE_12_PAIR A DT 2 A O4 DT 2 1_555 A DT 6 A N3 DT 6 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 8 A N1 DG 8 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 8 A O6 DG 8 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 8 A N2 DG 8 1_555 DNA minidumbbell, reverse wobble TT mispair, hydrophobic interaction, DNA 6J37 PDB 1 1 6J37 1 8 6J37 1 8 6J37 A 1 1 8 binding site for residue NA A 101 A NA 101 Software 2 binding site for residue NA A 102 A NA 102 Software 2 binding site for residue NA A 103 A NA 103 Software 2 binding site for residue NA A 104 A NA 104 Software 2 binding site for residue NA A 105 A NA 105 Software 2 binding site for residue NA A 106 A NA 106 Software 2 binding site for residue NA A 107 A NA 107 Software 1 A DG 4 A DG 4 2 1_555 A DC 5 A DC 5 2 1_555 A DT 7 A DT 7 2 1_555 A DG 8 A DG 8 2 1_555 A DT 3 A DT 3 2 1_555 A DG 4 A DG 4 2 1_555 A DG 4 A DG 4 2 1_555 A DC 5 A DC 5 2 1_555 A DT 7 A DT 7 2 1_555 A DG 8 A DG 8 2 1_555 A DT 7 A DT 7 2 1_555 A DG 8 A DG 8 2 1_555 A DT 2 A DT 2 1 1_555