0.007605
0.004391
0.000000
-0.000000
0.008782
0.000000
0.000000
-0.000000
0.011748
0.00000
0.00000
0.00000
Liu, X.C.
Gan, J.H.
Chen, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
131.490
131.490
85.118
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
N
Y
288
N
C
Y
289
N
C
Y
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
S
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
N
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
S
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
R
C
N
450
N
O
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
N
473
N
O
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
N
C
N
491
N
C
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
116
20398
20403
10.1073/pnas.1908610116
31548408
Selective cadmium regulation mediated by a cooperative binding mechanism in CadR.
2019
10.2210/pdb6jgx/pdb
pdb_00006jgx
100
1
N
CCD
2014-10-16
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL17U
SSRF
1.0
SYNCHROTRON
SSRF BEAMLINE BL17U
16671.707
CadR
2
man
polymer
6752.366
DNA (5'-D(*CP*AP*CP*CP*CP*TP*AP*TP*AP*GP*TP*GP*GP*CP*TP*AP*CP*AP*GP*GP*GP*T)-3')
1
syn
polymer
6752.367
DNA (5'-D(*GP*AP*CP*CP*CP*TP*GP*TP*AP*GP*CP*CP*AP*CP*TP*AP*TP*AP*GP*GP*GP*T)-3')
1
syn
polymer
112.411
CADMIUM ION
4
syn
non-polymer
Cd(II)/Pb(II)-responsive transcriptional regulator
no
no
MKIGELAKATDCAVETIRYYEREQLLPEPARSDGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPDDSCGSV
NALIDEHIEHVQARIDGLVALQEQLVELRRRCNAQGAECAILQQLETNGAVSVPETEHSHVGRSHGH
MKIGELAKATDCAVETIRYYEREQLLPEPARSDGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPDDSCGSV
NALIDEHIEHVQARIDGLVALQEQLVELRRRCNAQGAECAILQQLETNGAVSVPETEHSHVGRSHGH
A,B
polypeptide(L)
no
no
(DC)(DA)(DC)(DC)(DC)(DT)(DA)(DT)(DA)(DG)(DT)(DG)(DG)(DC)(DT)(DA)(DC)(DA)(DG)(DG)
(DG)(DT)
CACCCTATAGTGGCTACAGGGT
C
polydeoxyribonucleotide
no
no
(DG)(DA)(DC)(DC)(DC)(DT)(DG)(DT)(DA)(DG)(DC)(DC)(DA)(DC)(DT)(DA)(DT)(DA)(DG)(DG)
(DG)(DT)
GACCCTGTAGCCACTATAGGGT
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Arthrobacter siderocapsulatus
sample
1
147
47054
cadR, BIW19_10095, BL240_26950
303
Pseudomonas putida
469008
Escherichia coli BL21(DE3)
Biological sequence
1
4.77
74.23
VAPOR DIFFUSION, SITTING DROP
7.3
PEG 3350, potassium chloride, magnesium chloride, sodium cacodylate
289
7.661
1
20
C
2
D
22
-6.688
C_DA2:DT22_D
1
-6.484
0.115
0.158
-0.219
12.388
1
19
C
3
D
21
0.389
C_DC3:DG21_D
2
-9.006
0.027
0.240
-0.284
1.390
1
19
C
4
D
20
0.668
C_DC4:DG20_D
3
-12.979
-0.269
0.218
-0.105
-13.712
1
19
C
5
D
19
-0.551
C_DC5:DG19_D
4
-8.617
-0.134
0.350
-0.210
0.786
1
20
C
6
D
18
-3.582
C_DT6:DA18_D
5
-3.920
-0.272
-0.004
-0.235
5.932
1
20
C
7
D
17
-6.323
C_DA7:DT17_D
6
-14.304
0.452
0.204
-0.317
1.502
1
20
C
8
D
16
0.108
C_DT8:DA16_D
7
-6.438
-0.252
0.143
-0.140
2.736
1
20
C
9
D
15
5.351
C_DA9:DT15_D
8
-5.840
-0.452
0.125
-0.179
-4.219
1
19
C
10
D
14
1.739
C_DG10:DC14_D
9
-15.951
-0.257
0.329
-0.180
-1.515
1
20
C
11
D
13
-0.599
C_DT11:DA13_D
10
-1.316
0.161
0.189
-0.260
0.920
1
19
C
12
D
12
0.507
C_DG12:DC12_D
11
16.873
0.026
0.637
-0.216
3.520
1
19
C
13
D
11
3.449
C_DG13:DC11_D
12
-1.147
-0.381
0.195
-0.162
3.243
1
19
C
14
D
10
2.011
C_DC14:DG10_D
13
-14.890
0.213
0.296
-0.141
-3.620
1
20
C
15
D
9
2.669
C_DT15:DA9_D
14
-6.338
0.356
0.145
-0.205
-1.536
1
20
C
16
D
8
0.891
C_DA16:DT8_D
15
-5.168
0.175
0.079
-0.008
-7.789
1
19
C
17
D
7
0.266
C_DC17:DG7_D
16
-12.891
-0.202
0.352
-0.153
-1.203
1
20
C
18
D
6
-2.772
C_DA18:DT6_D
17
-4.100
0.156
0.006
-0.304
12.927
1
19
C
19
D
5
0.127
C_DG19:DC5_D
18
-8.426
0.128
0.258
-0.208
-1.946
1
19
C
20
D
4
5.984
C_DG20:DC4_D
19
-11.061
0.451
0.151
0.035
-13.936
1
19
C
21
D
3
0.458
C_DG21:DC3_D
20
-10.031
-0.093
0.110
-0.261
-8.976
1
20
C
22
D
2
-5.437
C_DT22:DA2_D
21
-8.072
-0.295
0.158
-0.243
3.045
31.807
C
C
2
3
1.999
D
D
22
21
3.207
1.093
1.070
-1.076
CC_DA2DC3:DG21DT22_DD
1
-3.281
5.998
31.623
-2.155
-2.527
3.381
33.012
C
C
3
4
3.537
D
D
21
20
3.489
2.006
-0.130
-1.717
CC_DC3DC4:DG20DG21_DD
2
-2.651
4.674
32.849
-3.379
-0.244
3.635
33.964
C
C
4
5
-1.546
D
D
20
19
3.620
-0.903
-0.430
-1.112
CC_DC4DC5:DG19DG20_DD
3
0.951
-1.628
33.940
-1.744
0.904
2.709
28.754
C
C
5
6
16.706
D
D
19
18
3.055
8.165
-0.449
-0.529
CC_DC5DT6:DA18DG19_DD
4
3.562
-7.287
27.367
-2.720
1.626
3.174
36.648
C
C
6
7
6.165
D
D
18
17
3.233
3.870
0.201
-0.404
CC_DT6DA7:DT17DA18_DD
5
-0.065
0.103
36.450
-1.164
-0.328
3.554
29.009
C
C
7
8
-2.327
D
D
17
16
3.436
-1.163
1.003
-0.901
CC_DA7DT8:DA16DT17_DD
6
3.036
-6.074
28.830
-1.524
-1.286
3.220
33.867
C
C
8
9
5.221
D
D
16
15
3.258
3.038
-0.215
-0.343
CC_DT8DA9:DT15DA16_DD
7
-0.702
1.207
33.727
-1.074
0.256
3.323
38.685
C
C
9
10
4.245
D
D
15
14
3.391
2.803
-0.174
-0.793
CC_DA9DG10:DC14DT15_DD
8
-4.878
7.388
38.289
-1.552
-0.355
3.104
26.446
C
C
10
11
6.565
D
D
14
13
3.219
2.997
-1.429
-0.872
CC_DG10DT11:DA13DC14_DD
9
-0.036
0.079
26.278
-2.677
3.113
3.521
32.082
C
C
11
12
54.918
D
D
13
12
3.880
26.116
-0.294
1.515
CC_DT11DG12:DC12DA13_DD
10
-1.916
4.029
18.699
-4.062
0.033
3.054
28.963
C
C
12
13
53.554
D
D
12
11
3.830
23.197
0.316
0.908
CC_DG12DG13:DC11DC12_DD
11
1.371
-3.165
17.408
-4.999
-0.229
3.232
26.382
C
C
13
14
5.258
D
D
11
10
3.305
2.396
1.140
-0.784
CC_DG13DC14:DG10DC11_DD
12
0.224
-0.491
26.273
-2.357
-2.438
3.292
39.180
C
C
14
15
5.511
D
D
10
9
3.394
3.684
0.105
-0.888
CC_DC14DT15:DA9DG10_DD
13
4.354
-6.514
38.779
-1.777
0.379
3.228
32.967
C
C
15
16
3.498
D
D
9
8
3.246
1.983
0.323
-0.403
CC_DT15DA16:DT8DA9_DD
14
1.366
-2.410
32.881
-1.045
-0.340
3.487
32.127
C
C
16
17
-0.602
D
D
8
7
3.452
-0.332
-0.456
-0.593
CC_DA16DC17:DG7DT8_DD
15
-3.994
7.236
31.883
-1.009
0.062
3.061
34.004
C
C
17
18
7.415
D
D
7
6
3.155
4.325
-0.703
-0.541
CC_DC17DA18:DT6DG7_DD
16
0.160
-0.274
33.736
-1.584
1.227
2.860
29.517
C
C
18
19
15.613
D
D
6
5
3.100
7.848
0.401
-0.289
CC_DA18DG19:DC5DT6_DD
17
-3.092
6.152
28.311
-2.122
-1.399
3.669
35.153
C
C
19
20
-1.578
D
D
5
4
3.663
-0.953
0.520
-1.050
CC_DG19DG20:DC4DC5_DD
18
-1.264
2.093
35.119
-1.578
-1.072
3.355
31.152
C
C
20
21
5.276
D
D
4
3
3.529
2.826
-0.001
-1.663
CC_DG20DG21:DC3DC4_DD
19
2.675
-4.993
30.913
-3.665
0.542
3.007
31.254
C
C
21
22
2.585
D
D
3
2
3.160
1.390
-1.100
-1.036
CC_DG21DT22:DA2DC3_DD
20
2.715
-5.046
31.109
-2.171
2.528
citation
citation_author
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ncs_dom_lim
repository
Initial release
Data collection
Database references
Data collection
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2019-09-25
1
1
2019-10-09
1
2
2019-10-23
1
3
2023-11-22
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
China
National Natural Science Foundation of China
N
PDBJ
Y
PDBJ
2019-02-15
REL
REL
CD
CADMIUM ION
303
Pseudomonas putida
sample
1
22
303
Pseudomonas putida
sample
1
22
6JGV
PDB
experimental model
CD
1001
4
CD
CD
1001
A
CD
1002
4
CD
CD
1002
A
CD
1003
4
CD
CD
201
B
CD
1004
4
CD
CD
202
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
ILE
3
n
3
ILE
3
A
GLY
4
n
4
GLY
4
A
GLU
5
n
5
GLU
5
A
LEU
6
n
6
LEU
6
A
ALA
7
n
7
ALA
7
A
LYS
8
n
8
LYS
8
A
ALA
9
n
9
ALA
9
A
THR
10
n
10
THR
10
A
ASP
11
n
11
ASP
11
A
CYS
12
n
12
CYS
12
A
ALA
13
n
13
ALA
13
A
VAL
14
n
14
VAL
14
A
GLU
15
n
15
GLU
15
A
THR
16
n
16
THR
16
A
ILE
17
n
17
ILE
17
A
ARG
18
n
18
ARG
18
A
TYR
19
n
19
TYR
19
A
TYR
20
n
20
TYR
20
A
GLU
21
n
21
GLU
21
A
ARG
22
n
22
ARG
22
A
GLU
23
n
23
GLU
23
A
GLN
24
n
24
GLN
24
A
LEU
25
n
25
LEU
25
A
LEU
26
n
26
LEU
26
A
PRO
27
n
27
PRO
27
A
GLU
28
n
28
GLU
28
A
PRO
29
n
29
PRO
29
A
ALA
30
n
30
ALA
30
A
ARG
31
n
31
ARG
31
A
SER
32
n
32
SER
32
A
ASP
33
n
33
ASP
33
A
GLY
34
n
34
GLY
34
A
ASN
35
n
35
ASN
35
A
TYR
36
n
36
TYR
36
A
ARG
37
n
37
ARG
37
A
LEU
38
n
38
LEU
38
A
TYR
39
n
39
TYR
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
HIS
43
n
43
HIS
43
A
VAL
44
n
44
VAL
44
A
GLU
45
n
45
GLU
45
A
ARG
46
n
46
ARG
46
A
LEU
47
n
47
LEU
47
A
THR
48
n
48
THR
48
A
PHE
49
n
49
PHE
49
A
ILE
50
n
50
ILE
50
A
ARG
51
n
51
ARG
51
A
ASN
52
n
52
ASN
52
A
CYS
53
n
53
CYS
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
MET
58
n
58
MET
58
A
THR
59
n
59
THR
59
A
LEU
60
n
60
LEU
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ILE
63
n
63
ILE
63
A
ARG
64
n
64
ARG
64
A
SER
65
n
65
SER
65
A
LEU
66
n
66
LEU
66
A
LEU
67
n
67
LEU
67
A
ARG
68
n
68
ARG
68
A
LEU
69
n
69
LEU
69
A
ARG
70
n
70
ARG
70
A
ASP
71
n
71
ASP
71
A
SER
72
n
72
SER
72
A
PRO
73
n
73
PRO
73
A
ASP
74
n
74
ASP
74
A
ASP
75
n
75
ASP
75
A
SER
76
n
76
SER
76
A
CYS
77
n
77
CYS
77
A
GLY
78
n
78
GLY
78
A
SER
79
n
79
SER
79
A
VAL
80
n
80
VAL
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
ILE
84
n
84
ILE
84
A
ASP
85
n
85
ASP
85
A
GLU
86
n
86
GLU
86
A
HIS
87
n
87
HIS
87
A
ILE
88
n
88
ILE
88
A
GLU
89
n
89
GLU
89
A
HIS
90
n
90
HIS
90
A
VAL
91
n
91
VAL
91
A
GLN
92
n
92
GLN
92
A
ALA
93
n
93
ALA
93
A
ARG
94
n
94
ARG
94
A
ILE
95
n
95
ILE
95
A
ASP
96
n
96
ASP
96
A
GLY
97
n
97
GLY
97
A
LEU
98
n
98
LEU
98
A
VAL
99
n
99
VAL
99
A
ALA
100
n
100
ALA
100
A
LEU
101
n
101
LEU
101
A
GLN
102
n
102
GLN
102
A
GLU
103
n
103
GLU
103
A
GLN
104
n
104
GLN
104
A
LEU
105
n
105
LEU
105
A
VAL
106
n
106
VAL
106
A
GLU
107
n
107
GLU
107
A
LEU
108
n
108
LEU
108
A
ARG
109
n
109
ARG
109
A
ARG
110
n
110
ARG
110
A
ARG
111
n
111
ARG
111
A
CYS
112
n
112
CYS
112
A
ASN
113
n
113
ASN
113
A
ALA
114
n
114
ALA
114
A
GLN
115
n
115
GLN
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
GLU
118
n
118
GLU
118
A
CYS
119
n
119
CYS
119
A
ALA
120
n
120
ALA
120
A
ILE
121
n
121
ILE
121
A
LEU
122
n
122
LEU
122
A
GLN
123
n
123
GLN
123
A
GLN
124
n
124
GLN
124
A
LEU
125
n
125
LEU
125
A
GLU
126
n
126
GLU
126
A
THR
127
n
127
THR
127
A
ASN
128
n
128
ASN
128
A
GLY
129
n
129
GLY
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
SER
132
n
132
SER
132
A
VAL
133
n
133
VAL
133
A
PRO
134
n
134
PRO
134
A
GLU
135
n
135
GLU
135
A
THR
136
n
136
THR
136
A
n
137
137
A
n
138
138
A
SER
139
n
139
SER
139
A
HIS
140
n
140
HIS
140
A
VAL
141
n
141
VAL
141
A
GLY
142
n
142
GLY
142
A
ARG
143
n
143
ARG
143
A
SER
144
n
144
SER
144
A
HIS
145
n
145
HIS
145
A
n
146
146
A
n
147
147
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
ILE
3
n
3
ILE
3
B
GLY
4
n
4
GLY
4
B
GLU
5
n
5
GLU
5
B
LEU
6
n
6
LEU
6
B
ALA
7
n
7
ALA
7
B
LYS
8
n
8
LYS
8
B
ALA
9
n
9
ALA
9
B
THR
10
n
10
THR
10
B
ASP
11
n
11
ASP
11
B
CYS
12
n
12
CYS
12
B
ALA
13
n
13
ALA
13
B
VAL
14
n
14
VAL
14
B
GLU
15
n
15
GLU
15
B
THR
16
n
16
THR
16
B
ILE
17
n
17
ILE
17
B
ARG
18
n
18
ARG
18
B
TYR
19
n
19
TYR
19
B
TYR
20
n
20
TYR
20
B
GLU
21
n
21
GLU
21
B
ARG
22
n
22
ARG
22
B
GLU
23
n
23
GLU
23
B
GLN
24
n
24
GLN
24
B
LEU
25
n
25
LEU
25
B
LEU
26
n
26
LEU
26
B
PRO
27
n
27
PRO
27
B
GLU
28
n
28
GLU
28
B
PRO
29
n
29
PRO
29
B
ALA
30
n
30
ALA
30
B
ARG
31
n
31
ARG
31
B
SER
32
n
32
SER
32
B
ASP
33
n
33
ASP
33
B
GLY
34
n
34
GLY
34
B
ASN
35
n
35
ASN
35
B
TYR
36
n
36
TYR
36
B
ARG
37
n
37
ARG
37
B
LEU
38
n
38
LEU
38
B
TYR
39
n
39
TYR
39
B
THR
40
n
40
THR
40
B
GLN
41
n
41
GLN
41
B
ALA
42
n
42
ALA
42
B
HIS
43
n
43
HIS
43
B
VAL
44
n
44
VAL
44
B
GLU
45
n
45
GLU
45
B
ARG
46
n
46
ARG
46
B
LEU
47
n
47
LEU
47
B
THR
48
n
48
THR
48
B
PHE
49
n
49
PHE
49
B
ILE
50
n
50
ILE
50
B
ARG
51
n
51
ARG
51
B
ASN
52
n
52
ASN
52
B
CYS
53
n
53
CYS
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
ASP
57
n
57
ASP
57
B
MET
58
n
58
MET
58
B
THR
59
n
59
THR
59
B
LEU
60
n
60
LEU
60
B
ASP
61
n
61
ASP
61
B
GLU
62
n
62
GLU
62
B
ILE
63
n
63
ILE
63
B
ARG
64
n
64
ARG
64
B
SER
65
n
65
SER
65
B
LEU
66
n
66
LEU
66
B
LEU
67
n
67
LEU
67
B
ARG
68
n
68
ARG
68
B
LEU
69
n
69
LEU
69
B
ARG
70
n
70
ARG
70
B
ASP
71
n
71
ASP
71
B
SER
72
n
72
SER
72
B
PRO
73
n
73
PRO
73
B
ASP
74
n
74
ASP
74
B
ASP
75
n
75
ASP
75
B
SER
76
n
76
SER
76
B
CYS
77
n
77
CYS
77
B
GLY
78
n
78
GLY
78
B
SER
79
n
79
SER
79
B
VAL
80
n
80
VAL
80
B
ASN
81
n
81
ASN
81
B
ALA
82
n
82
ALA
82
B
LEU
83
n
83
LEU
83
B
ILE
84
n
84
ILE
84
B
ASP
85
n
85
ASP
85
B
GLU
86
n
86
GLU
86
B
HIS
87
n
87
HIS
87
B
ILE
88
n
88
ILE
88
B
GLU
89
n
89
GLU
89
B
HIS
90
n
90
HIS
90
B
VAL
91
n
91
VAL
91
B
GLN
92
n
92
GLN
92
B
ALA
93
n
93
ALA
93
B
ARG
94
n
94
ARG
94
B
ILE
95
n
95
ILE
95
B
ASP
96
n
96
ASP
96
B
GLY
97
n
97
GLY
97
B
LEU
98
n
98
LEU
98
B
VAL
99
n
99
VAL
99
B
ALA
100
n
100
ALA
100
B
LEU
101
n
101
LEU
101
B
GLN
102
n
102
GLN
102
B
GLU
103
n
103
GLU
103
B
GLN
104
n
104
GLN
104
B
LEU
105
n
105
LEU
105
B
VAL
106
n
106
VAL
106
B
GLU
107
n
107
GLU
107
B
LEU
108
n
108
LEU
108
B
ARG
109
n
109
ARG
109
B
ARG
110
n
110
ARG
110
B
ARG
111
n
111
ARG
111
B
CYS
112
n
112
CYS
112
B
ASN
113
n
113
ASN
113
B
ALA
114
n
114
ALA
114
B
GLN
115
n
115
GLN
115
B
GLY
116
n
116
GLY
116
B
ALA
117
n
117
ALA
117
B
GLU
118
n
118
GLU
118
B
CYS
119
n
119
CYS
119
B
ALA
120
n
120
ALA
120
B
ILE
121
n
121
ILE
121
B
LEU
122
n
122
LEU
122
B
GLN
123
n
123
GLN
123
B
GLN
124
n
124
GLN
124
B
LEU
125
n
125
LEU
125
B
GLU
126
n
126
GLU
126
B
THR
127
n
127
THR
127
B
ASN
128
n
128
ASN
128
B
GLY
129
n
129
GLY
129
B
ALA
130
n
130
ALA
130
B
VAL
131
n
131
VAL
131
B
SER
132
n
132
SER
132
B
VAL
133
n
133
VAL
133
B
PRO
134
n
134
PRO
134
B
GLU
135
n
135
GLU
135
B
THR
136
n
136
THR
136
B
n
137
137
B
n
138
138
B
n
139
139
B
n
140
140
B
n
141
141
B
n
142
142
B
n
143
143
B
n
144
144
B
n
145
145
B
n
146
146
B
n
147
147
B
DC
1
n
1
DC
1
C
DA
2
n
2
DA
2
C
DC
3
n
3
DC
3
C
DC
4
n
4
DC
4
C
DC
5
n
5
DC
5
C
DT
6
n
6
DT
6
C
DA
7
n
7
DA
7
C
DT
8
n
8
DT
8
C
DA
9
n
9
DA
9
C
DG
10
n
10
DG
10
C
DT
11
n
11
DT
11
C
DG
12
n
12
DG
12
C
DG
13
n
13
DG
13
C
DC
14
n
14
DC
14
C
DT
15
n
15
DT
15
C
DA
16
n
16
DA
16
C
DC
17
n
17
DC
17
C
DA
18
n
18
DA
18
C
DG
19
n
19
DG
19
C
DG
20
n
20
DG
20
C
DG
21
n
21
DG
21
C
DT
22
n
22
DT
22
C
DG
1
n
1
DG
1
D
DA
2
n
2
DA
2
D
DC
3
n
3
DC
3
D
DC
4
n
4
DC
4
D
DC
5
n
5
DC
5
D
DT
6
n
6
DT
6
D
DG
7
n
7
DG
7
D
DT
8
n
8
DT
8
D
DA
9
n
9
DA
9
D
DG
10
n
10
DG
10
D
DC
11
n
11
DC
11
D
DC
12
n
12
DC
12
D
DA
13
n
13
DA
13
D
DC
14
n
14
DC
14
D
DT
15
n
15
DT
15
D
DA
16
n
16
DA
16
D
DT
17
n
17
DT
17
D
DA
18
n
18
DA
18
D
DG
19
n
19
DG
19
D
DG
20
n
20
DG
20
D
DG
21
n
21
DG
21
D
DT
22
n
22
DT
22
D
author_and_software_defined_assembly
PISA
4
tetrameric
gel filtration
9910
-94
20710
A
GLU
62
A
OE1
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
GLU
62
A
OE2
GLU
62
1_555
55.9
A
GLU
62
A
OE1
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
87
A
ND1
HIS
87
1_555
107.1
A
GLU
62
A
OE2
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
87
A
ND1
HIS
87
1_555
99.6
A
GLU
62
A
OE1
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
90
A
ND1
HIS
90
1_555
78.8
A
GLU
62
A
OE2
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
90
A
ND1
HIS
90
1_555
130.7
A
HIS
87
A
ND1
HIS
87
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
90
A
ND1
HIS
90
1_555
112.7
A
GLU
62
A
OE1
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
140
A
NE2
HIS
140
1_555
139.5
A
GLU
62
A
OE2
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
140
A
NE2
HIS
140
1_555
100.4
A
HIS
87
A
ND1
HIS
87
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
140
A
NE2
HIS
140
1_555
109.1
A
HIS
90
A
ND1
HIS
90
1_555
A
CD
1002
F
CD
CD
1_555
A
HIS
140
A
NE2
HIS
140
1_555
102.8
A
CYS
77
A
SG
CYS
77
1_555
A
CD
1001
E
CD
CD
1_555
A
ASN
81
A
OD1
ASN
81
1_555
113.7
A
CYS
77
A
SG
CYS
77
1_555
A
CD
1001
E
CD
CD
1_555
B
CYS
112
B
SG
CYS
112
1_555
109.5
A
ASN
81
A
OD1
ASN
81
1_555
A
CD
1001
E
CD
CD
1_555
B
CYS
112
B
SG
CYS
112
1_555
91.9
A
CYS
77
A
SG
CYS
77
1_555
A
CD
1001
E
CD
CD
1_555
B
CYS
119
B
SG
CYS
119
1_555
107.6
A
ASN
81
A
OD1
ASN
81
1_555
A
CD
1001
E
CD
CD
1_555
B
CYS
119
B
SG
CYS
119
1_555
110.5
B
CYS
112
B
SG
CYS
112
1_555
A
CD
1001
E
CD
CD
1_555
B
CYS
119
B
SG
CYS
119
1_555
123.1
A
CYS
112
A
SG
CYS
112
1_555
B
CD
201
G
CD
CD
1_555
A
CYS
119
A
SG
CYS
119
1_555
125.1
A
CYS
112
A
SG
CYS
112
1_555
B
CD
201
G
CD
CD
1_555
B
CYS
77
B
SG
CYS
77
1_555
108.7
A
CYS
119
A
SG
CYS
119
1_555
B
CD
201
G
CD
CD
1_555
B
CYS
77
B
SG
CYS
77
1_555
107.2
A
CYS
112
A
SG
CYS
112
1_555
B
CD
201
G
CD
CD
1_555
B
ASN
81
B
OD1
ASN
81
1_555
94.0
A
CYS
119
A
SG
CYS
119
1_555
B
CD
201
G
CD
CD
1_555
B
ASN
81
B
OD1
ASN
81
1_555
110.5
B
CYS
77
B
SG
CYS
77
1_555
B
CD
201
G
CD
CD
1_555
B
ASN
81
B
OD1
ASN
81
1_555
110.5
A
HIS
145
A
NE2
HIS
145
1_555
B
CD
202
H
CD
CD
1_555
B
GLU
62
B
OE1
GLU
62
1_555
135.2
A
HIS
145
A
NE2
HIS
145
1_555
B
CD
202
H
CD
CD
1_555
B
GLU
62
B
OE2
GLU
62
1_555
98.6
B
GLU
62
B
OE1
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
B
GLU
62
B
OE2
GLU
62
1_555
55.8
A
HIS
145
A
NE2
HIS
145
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
87
B
ND1
HIS
87
1_555
112.9
B
GLU
62
B
OE1
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
87
B
ND1
HIS
87
1_555
107.4
B
GLU
62
B
OE2
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
87
B
ND1
HIS
87
1_555
98.9
A
HIS
145
A
NE2
HIS
145
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
90
B
ND1
HIS
90
1_555
102.3
B
GLU
62
B
OE1
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
90
B
ND1
HIS
90
1_555
78.3
B
GLU
62
B
OE2
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
90
B
ND1
HIS
90
1_555
130.4
B
HIS
87
B
ND1
HIS
87
1_555
B
CD
202
H
CD
CD
1_555
B
HIS
90
B
ND1
HIS
90
1_555
113.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
30
A
N
ALA
30
A
O
LEU
38
A
O
LEU
38
B
N
ALA
30
B
N
ALA
30
B
O
LEU
38
B
O
LEU
38
1
A
CG
GLU
135
A
CG
GLU
135
1
Y
1
A
CD
GLU
135
A
CD
GLU
135
1
Y
1
A
OE1
GLU
135
A
OE1
GLU
135
1
Y
1
A
OE2
GLU
135
A
OE2
GLU
135
1
Y
1
B
CG
GLU
135
B
CG
GLU
135
1
Y
1
B
CD
GLU
135
B
CD
GLU
135
1
Y
1
B
OE1
GLU
135
B
OE1
GLU
135
1
Y
1
B
OE2
GLU
135
B
OE2
GLU
135
1
Y
1
A
GLU
137
A
GLU
137
1
Y
1
A
HIS
138
A
HIS
138
1
Y
1
A
GLY
146
A
GLY
146
1
Y
1
A
HIS
147
A
HIS
147
1
Y
1
B
GLU
137
B
GLU
137
1
Y
1
B
HIS
138
B
HIS
138
1
Y
1
B
SER
139
B
SER
139
1
Y
1
B
HIS
140
B
HIS
140
1
Y
1
B
VAL
141
B
VAL
141
1
Y
1
B
GLY
142
B
GLY
142
1
Y
1
B
ARG
143
B
ARG
143
1
Y
1
B
SER
144
B
SER
144
1
Y
1
B
HIS
145
B
HIS
145
1
Y
1
B
GLY
146
B
GLY
146
1
Y
1
B
HIS
147
B
HIS
147
1
Y
1
-6.56
1.00
110.10
103.54
C
C
C
C1'
O4'
C4'
DC
DC
DC
3
3
3
N
1
-6.67
1.00
110.10
103.43
D
D
D
C1'
O4'
C4'
DC
DC
DC
3
3
3
N
1
A
ASP
57
76.54
34.11
1
A
ARG
111
-89.04
42.22
1
A
ARG
143
-96.11
-153.38
1
A
SER
144
-58.49
174.78
1
B
ASP
57
76.38
34.20
1
B
ARG
111
-90.14
42.27
85.244
-2.08
-1.04
-0.00
-2.08
0.00
6.74
0.957
0.947
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23347
0.20927
0.21051
2.71
30.00
1128
21613
5.0
98.79
11.518
0.221
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.335
0.244
0.80
0.80
1.20
6JGV
2.71
30.00
0
3100
4
896
2200
0.008
0.017
3227
0.003
0.020
2643
1.359
1.700
4550
1.172
3.000
6084
5.924
5.000
276
41.475
23.504
117
18.026
15.000
402
16.620
15.000
29
0.076
0.200
481
0.007
0.020
3069
0.002
0.020
730
6.042
8.762
1113
6.030
8.759
1112
9.484
13.124
1386
9.484
13.128
1387
6.574
8.528
2114
6.570
8.529
2113
10.202
12.703
3165
13.664
69.132
3903
13.662
69.129
3902
1
A
1
15860
X-RAY DIFFRACTION
interatomic distance
0.04
0.05
2
B
1
15860
X-RAY DIFFRACTION
interatomic distance
0.04
0.05
0.389
0.399
2.775
92
1491
20
96.06
2.70
30.00
6JGX
22742
0.06
1
26.2
6.2
98.9
0.56
2.70
2.80
2.2
2213
1
4.8
96.9
refinement
REFMAC
5.8.0103
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
N
Crystal structure of the transcriptional regulator CadR from P. putida in complex with Cadmium(II) and DNA
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
LYS
2
A
LYS
2
HELX_P
A
ASP
11
A
ASP
11
1
AA1
10
A
ALA
13
A
ALA
13
HELX_P
A
GLU
23
A
GLU
23
1
AA2
11
A
THR
40
A
THR
40
HELX_P
A
LEU
56
A
LEU
56
1
AA3
17
A
THR
59
A
THR
59
HELX_P
A
ASP
71
A
ASP
71
1
AA4
13
A
SER
76
A
SER
76
HELX_P
A
ARG
110
A
ARG
110
1
AA5
35
A
CYS
119
A
CYS
119
HELX_P
A
THR
127
A
THR
127
1
AA6
9
B
LYS
2
B
LYS
2
HELX_P
B
ASP
11
B
ASP
11
1
AA7
10
B
ALA
13
B
ALA
13
HELX_P
B
GLU
23
B
GLU
23
1
AA8
11
B
THR
40
B
THR
40
HELX_P
B
LEU
56
B
LEU
56
1
AA9
17
B
THR
59
B
THR
59
HELX_P
B
ASP
71
B
ASP
71
1
AB1
13
B
SER
76
B
SER
76
HELX_P
B
ARG
110
B
ARG
110
1
AB2
35
B
CYS
119
B
CYS
119
HELX_P
B
THR
127
B
THR
127
1
AB3
9
metalc
2.234
A
GLU
62
A
OE1
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
metalc
2.347
A
GLU
62
A
OE2
GLU
62
1_555
A
CD
1002
F
CD
CD
1_555
metalc
2.530
A
CYS
77
A
SG
CYS
77
1_555
A
CD
1001
E
CD
CD
1_555
metalc
2.333
A
ASN
81
A
OD1
ASN
81
1_555
A
CD
1001
E
CD
CD
1_555
metalc
2.280
A
HIS
87
A
ND1
HIS
87
1_555
A
CD
1002
F
CD
CD
1_555
metalc
2.473
A
HIS
90
A
ND1
HIS
90
1_555
A
CD
1002
F
CD
CD
1_555
metalc
2.396
A
CYS
112
A
SG
CYS
112
1_555
B
CD
201
G
CD
CD
1_555
metalc
2.486
A
CYS
119
A
SG
CYS
119
1_555
B
CD
201
G
CD
CD
1_555
metalc
2.223
A
HIS
140
A
NE2
HIS
140
1_555
A
CD
1002
F
CD
CD
1_555
metalc
2.322
A
HIS
145
A
NE2
HIS
145
1_555
B
CD
202
H
CD
CD
1_555
metalc
2.424
A
CD
1001
E
CD
CD
1_555
B
CYS
112
B
SG
CYS
112
1_555
metalc
2.510
A
CD
1001
E
CD
CD
1_555
B
CYS
119
B
SG
CYS
119
1_555
metalc
2.235
B
GLU
62
B
OE1
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
metalc
2.361
B
GLU
62
B
OE2
GLU
62
1_555
B
CD
202
H
CD
CD
1_555
metalc
2.561
B
CYS
77
B
SG
CYS
77
1_555
B
CD
201
G
CD
CD
1_555
metalc
2.349
B
ASN
81
B
OD1
ASN
81
1_555
B
CD
201
G
CD
CD
1_555
metalc
2.269
B
HIS
87
B
ND1
HIS
87
1_555
B
CD
202
H
CD
CD
1_555
metalc
2.483
B
HIS
90
B
ND1
HIS
90
1_555
B
CD
202
H
CD
CD
1_555
hydrog
WATSON-CRICK
C
DA
2
C
N1
DA
2
1_555
D
DT
22
D
N3
DT
22
1_555
hydrog
WATSON-CRICK
C
DA
2
C
N6
DA
2
1_555
D
DT
22
D
O4
DT
22
1_555
hydrog
WATSON-CRICK
C
DC
3
C
N3
DC
3
1_555
D
DG
21
D
N1
DG
21
1_555
hydrog
WATSON-CRICK
C
DC
3
C
N4
DC
3
1_555
D
DG
21
D
O6
DG
21
1_555
hydrog
WATSON-CRICK
C
DC
3
C
O2
DC
3
1_555
D
DG
21
D
N2
DG
21
1_555
hydrog
WATSON-CRICK
C
DC
4
C
N3
DC
4
1_555
D
DG
20
D
N1
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
4
C
N4
DC
4
1_555
D
DG
20
D
O6
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
4
C
O2
DC
4
1_555
D
DG
20
D
N2
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
5
C
N3
DC
5
1_555
D
DG
19
D
N1
DG
19
1_555
hydrog
WATSON-CRICK
C
DC
5
C
N4
DC
5
1_555
D
DG
19
D
O6
DG
19
1_555
hydrog
WATSON-CRICK
C
DC
5
C
O2
DC
5
1_555
D
DG
19
D
N2
DG
19
1_555
hydrog
WATSON-CRICK
C
DT
6
C
N3
DT
6
1_555
D
DA
18
D
N1
DA
18
1_555
hydrog
WATSON-CRICK
C
DT
6
C
O4
DT
6
1_555
D
DA
18
D
N6
DA
18
1_555
hydrog
WATSON-CRICK
C
DA
7
C
N1
DA
7
1_555
D
DT
17
D
N3
DT
17
1_555
hydrog
WATSON-CRICK
C
DA
7
C
N6
DA
7
1_555
D
DT
17
D
O4
DT
17
1_555
hydrog
WATSON-CRICK
C
DT
8
C
N3
DT
8
1_555
D
DA
16
D
N1
DA
16
1_555
hydrog
WATSON-CRICK
C
DT
8
C
O4
DT
8
1_555
D
DA
16
D
N6
DA
16
1_555
hydrog
WATSON-CRICK
C
DA
9
C
N1
DA
9
1_555
D
DT
15
D
N3
DT
15
1_555
hydrog
WATSON-CRICK
C
DA
9
C
N6
DA
9
1_555
D
DT
15
D
O4
DT
15
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N1
DG
10
1_555
D
DC
14
D
N3
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N2
DG
10
1_555
D
DC
14
D
O2
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
10
C
O6
DG
10
1_555
D
DC
14
D
N4
DC
14
1_555
hydrog
WATSON-CRICK
C
DT
11
C
N3
DT
11
1_555
D
DA
13
D
N1
DA
13
1_555
hydrog
WATSON-CRICK
C
DT
11
C
O4
DT
11
1_555
D
DA
13
D
N6
DA
13
1_555
hydrog
WATSON-CRICK
C
DG
12
C
N1
DG
12
1_555
D
DC
12
D
N3
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
12
C
N2
DG
12
1_555
D
DC
12
D
O2
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
12
C
O6
DG
12
1_555
D
DC
12
D
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
13
1_555
D
DC
11
D
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
13
1_555
D
DC
11
D
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
13
1_555
D
DC
11
D
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N3
DC
14
1_555
D
DG
10
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N4
DC
14
1_555
D
DG
10
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
14
C
O2
DC
14
1_555
D
DG
10
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DT
15
C
N3
DT
15
1_555
D
DA
9
D
N1
DA
9
1_555
hydrog
WATSON-CRICK
C
DT
15
C
O4
DT
15
1_555
D
DA
9
D
N6
DA
9
1_555
hydrog
WATSON-CRICK
C
DA
16
C
N1
DA
16
1_555
D
DT
8
D
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
16
C
N6
DA
16
1_555
D
DT
8
D
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DC
17
C
N3
DC
17
1_555
D
DG
7
D
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
17
C
N4
DC
17
1_555
D
DG
7
D
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
17
C
O2
DC
17
1_555
D
DG
7
D
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DA
18
C
N1
DA
18
1_555
D
DT
6
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
18
C
N6
DA
18
1_555
D
DT
6
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DG
19
C
N1
DG
19
1_555
D
DC
5
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
19
C
N2
DG
19
1_555
D
DC
5
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
19
C
O6
DG
19
1_555
D
DC
5
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
20
C
N1
DG
20
1_555
D
DC
4
D
N3
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
20
C
N2
DG
20
1_555
D
DC
4
D
O2
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
20
C
O6
DG
20
1_555
D
DC
4
D
N4
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
21
C
N1
DG
21
1_555
D
DC
3
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
21
C
N2
DG
21
1_555
D
DC
3
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
21
C
O6
DG
21
1_555
D
DC
3
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
C
DT
22
C
N3
DT
22
1_555
D
DA
2
D
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
22
C
O4
DT
22
1_555
D
DA
2
D
N6
DA
2
1_555
TRANSCRIPTION/DNA
CadR, MerR family, cadmium regulator, TRANSCRIPTION, TRANSCRIPTION-DNA complex
A
B
A
MET
1
A
MET
1
A
GLU
135
A
GLU
135
0
B
MET
1
B
MET
1
B
GLU
135
B
GLU
135
0
Q93TP7_PSEPU
UNP
1
1
Q93TP7
MKIGELAKATDCAVETIRYYEREQLLPEPARSDGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPDDSCGSV
NALIDEHIEHVQARIDGLVALQEQLVELRRRCNAQGAECAILQQLETNGAVSVPETEHSHVGRSHGH
6JGX
PDB
2
1
6JGX
6JGX
PDB
3
1
6JGX
1
147
6JGX
1
147
Q93TP7
A
1
1
147
1
147
6JGX
1
147
Q93TP7
B
1
1
147
1
22
6JGX
1
22
6JGX
C
2
1
22
1
22
6JGX
1
22
6JGX
D
3
1
22
2
2
anti-parallel
anti-parallel
A
ALA
30
A
ALA
30
A
ARG
31
A
ARG
31
A
ARG
37
A
ARG
37
A
LEU
38
A
LEU
38
B
ALA
30
B
ALA
30
B
ARG
31
B
ARG
31
B
ARG
37
B
ARG
37
B
LEU
38
B
LEU
38
binding site for residue CD A 1001
A
CD
1001
Software
4
binding site for residue CD A 1002
A
CD
1002
Software
4
binding site for residue CD B 201
B
CD
201
Software
4
binding site for residue CD B 202
B
CD
202
Software
4
A
CYS
77
A
CYS
77
4
1_555
A
ASN
81
A
ASN
81
4
1_555
B
CYS
112
B
CYS
112
4
1_555
B
CYS
119
B
CYS
119
4
1_555
A
GLU
62
A
GLU
62
4
1_555
A
HIS
87
A
HIS
87
4
1_555
A
HIS
90
A
HIS
90
4
1_555
A
HIS
140
A
HIS
140
4
1_555
A
CYS
112
A
CYS
112
4
1_555
A
CYS
119
A
CYS
119
4
1_555
B
CYS
77
B
CYS
77
4
1_555
B
ASN
81
B
ASN
81
4
1_555
A
HIS
145
A
HIS
145
4
1_555
B
GLU
62
B
GLU
62
4
1_555
B
HIS
87
B
HIS
87
4
1_555
B
HIS
90
B
HIS
90
4
1_555
173
P 63