0.025030
0.000000
0.000000
-0.000000
0.009748
0.000000
0.000000
-0.000000
0.007261
0.00000
0.00000
0.00000
0000-0003-3481-8671
Liu, J.X.
Wang, G.Q.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
39.952
102.590
137.723
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
R
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
N
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
UK
Sci Rep
2045-2322
9
17830
17830
10.1038/s41598-019-54231-w
31780710
Study of the interactions of a novel monoclonal antibody, mAb059c, with the hPD-1 receptor.
2019
10.2210/pdb6k0y/pdb
pdb_00006k0y
100
1
N
Q315r
PIXEL
2019-05-06
DECTRIS PILATUS3 R CdTe 300K
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
BL17U
SSRF
0.97918
SYNCHROTRON
SSRF BEAMLINE BL17U
23275.980
Antibody Heavy Chain
1
man
polymer
23447.072
Antibody Light Chain
1
man
polymer
15954.713
Programmed cell death protein 1
C93S
1
man
polymer
62.068
1,2-ETHANEDIOL
4
syn
non-polymer
18.015
water
492
nat
water
hPD-1
no
no
QVQLQESGPGLVKPSETLSLTCAVSGHSIRGSYFWGWIRQPPGRGLEWIGSIYHSGSTYTNPSLKSRATISVDTSKNQFS
LKLNSVTAADTAVYYCARDLDIATTRDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVE
QVQLQESGPGLVKPSETLSLTCAVSGHSIRGSYFWGWIRQPPGRGLEWIGSIYHSGSTYTNPSLKSRATISVDTSKNQFS
LKLNSVTAADTAVYYCARDLDIATTRDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVE
A
polypeptide(L)
no
no
DIQLTQSPSFLSASVGDRVTIICRASQGINNYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP
EDFATYYCQQLDSYPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
DIQLTQSPSFLSASVGDRVTIICRASQGINNYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQP
EDFATYYCQQLDSYPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
B
polypeptide(L)
no
no
LDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGR
DFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQ
LDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGR
DFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQ
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
Human
sample
1
218
9606
Homo sapiens
HEK293
9606
Homo sapiens
Biological sequence
Human
Human
sample
1
214
9606
Homo sapiens
HEK293
9606
Homo sapiens
Biological sequence
Human
sample
1
143
PDCD1, PD1
9606
Homo sapiens
1182032
Escherichia coli-Pichia pastoris shuttle vector pPpARG4
BL21
Biological sequence
1
2.35
47.78
single long shape
VAPOR DIFFUSION, HANGING DROP
8
0.2M NaCl , 0.1M Tris pH 8, 14% PEG 4K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2019-12-11
1
1
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBJ
Y
PDBJ
2019-05-08
REL
REL
1
B
O
HOH
629
5.90
1
B
O
HOH
630
5.91
1
B
O
HOH
631
7.09
EDO
1,2-ETHANEDIOL
HOH
water
5GGS
PDB
experimental model
EDO
501
4
EDO
EDO
501
A
EDO
601
4
EDO
EDO
502
A
EDO
301
4
EDO
EDO
301
B
EDO
201
4
EDO
EDO
201
C
HOH
438
5
HOH
HOH
601
A
HOH
408
5
HOH
HOH
602
A
HOH
341
5
HOH
HOH
603
A
HOH
219
5
HOH
HOH
604
A
HOH
150
5
HOH
HOH
605
A
HOH
149
5
HOH
HOH
606
A
HOH
394
5
HOH
HOH
607
A
HOH
491
5
HOH
HOH
608
A
HOH
317
5
HOH
HOH
609
A
HOH
282
5
HOH
HOH
610
A
HOH
377
5
HOH
HOH
611
A
HOH
80
5
HOH
HOH
612
A
HOH
288
5
HOH
HOH
613
A
HOH
138
5
HOH
HOH
614
A
HOH
471
5
HOH
HOH
615
A
HOH
451
5
HOH
HOH
616
A
HOH
166
5
HOH
HOH
617
A
HOH
361
5
HOH
HOH
618
A
HOH
165
5
HOH
HOH
619
A
HOH
420
5
HOH
HOH
620
A
HOH
35
5
HOH
HOH
621
A
HOH
236
5
HOH
HOH
622
A
HOH
103
5
HOH
HOH
623
A
HOH
379
5
HOH
HOH
624
A
HOH
16
5
HOH
HOH
625
A
HOH
210
5
HOH
HOH
626
A
HOH
117
5
HOH
HOH
627
A
HOH
214
5
HOH
HOH
628
A
HOH
115
5
HOH
HOH
629
A
HOH
427
5
HOH
HOH
630
A
HOH
443
5
HOH
HOH
631
A
HOH
467
5
HOH
HOH
632
A
HOH
267
5
HOH
HOH
633
A
HOH
121
5
HOH
HOH
634
A
HOH
247
5
HOH
HOH
635
A
HOH
397
5
HOH
HOH
636
A
HOH
169
5
HOH
HOH
637
A
HOH
256
5
HOH
HOH
638
A
HOH
43
5
HOH
HOH
639
A
HOH
235
5
HOH
HOH
640
A
HOH
309
5
HOH
HOH
641
A
HOH
220
5
HOH
HOH
642
A
HOH
11
5
HOH
HOH
643
A
HOH
199
5
HOH
HOH
644
A
HOH
60
5
HOH
HOH
645
A
HOH
349
5
HOH
HOH
646
A
HOH
206
5
HOH
HOH
647
A
HOH
148
5
HOH
HOH
648
A
HOH
208
5
HOH
HOH
649
A
HOH
237
5
HOH
HOH
650
A
HOH
116
5
HOH
HOH
651
A
HOH
140
5
HOH
HOH
652
A
HOH
88
5
HOH
HOH
653
A
HOH
98
5
HOH
HOH
654
A
HOH
322
5
HOH
HOH
655
A
HOH
417
5
HOH
HOH
656
A
HOH
249
5
HOH
HOH
657
A
HOH
320
5
HOH
HOH
658
A
HOH
160
5
HOH
HOH
659
A
HOH
137
5
HOH
HOH
660
A
HOH
239
5
HOH
HOH
661
A
HOH
480
5
HOH
HOH
662
A
HOH
86
5
HOH
HOH
663
A
HOH
187
5
HOH
HOH
664
A
HOH
34
5
HOH
HOH
665
A
HOH
338
5
HOH
HOH
666
A
HOH
25
5
HOH
HOH
667
A
HOH
181
5
HOH
HOH
668
A
HOH
176
5
HOH
HOH
669
A
HOH
33
5
HOH
HOH
670
A
HOH
7
5
HOH
HOH
671
A
HOH
430
5
HOH
HOH
672
A
HOH
454
5
HOH
HOH
673
A
HOH
110
5
HOH
HOH
674
A
HOH
126
5
HOH
HOH
675
A
HOH
192
5
HOH
HOH
676
A
HOH
364
5
HOH
HOH
677
A
HOH
259
5
HOH
HOH
678
A
HOH
14
5
HOH
HOH
679
A
HOH
231
5
HOH
HOH
680
A
HOH
271
5
HOH
HOH
681
A
HOH
132
5
HOH
HOH
682
A
HOH
56
5
HOH
HOH
683
A
HOH
78
5
HOH
HOH
684
A
HOH
445
5
HOH
HOH
685
A
HOH
242
5
HOH
HOH
686
A
HOH
104
5
HOH
HOH
687
A
HOH
269
5
HOH
HOH
688
A
HOH
264
5
HOH
HOH
689
A
HOH
147
5
HOH
HOH
690
A
HOH
162
5
HOH
HOH
691
A
HOH
49
5
HOH
HOH
692
A
HOH
83
5
HOH
HOH
693
A
HOH
472
5
HOH
HOH
694
A
HOH
152
5
HOH
HOH
695
A
HOH
81
5
HOH
HOH
696
A
HOH
93
5
HOH
HOH
697
A
HOH
302
5
HOH
HOH
698
A
HOH
229
5
HOH
HOH
699
A
HOH
223
5
HOH
HOH
700
A
HOH
244
5
HOH
HOH
701
A
HOH
174
5
HOH
HOH
702
A
HOH
428
5
HOH
HOH
703
A
HOH
308
5
HOH
HOH
704
A
HOH
31
5
HOH
HOH
705
A
HOH
156
5
HOH
HOH
706
A
HOH
73
5
HOH
HOH
707
A
HOH
89
5
HOH
HOH
708
A
HOH
246
5
HOH
HOH
709
A
HOH
365
5
HOH
HOH
710
A
HOH
410
5
HOH
HOH
711
A
HOH
8
5
HOH
HOH
712
A
HOH
179
5
HOH
HOH
713
A
HOH
23
5
HOH
HOH
714
A
HOH
284
5
HOH
HOH
715
A
HOH
418
5
HOH
HOH
716
A
HOH
191
5
HOH
HOH
717
A
HOH
213
5
HOH
HOH
718
A
HOH
4
5
HOH
HOH
719
A
HOH
143
5
HOH
HOH
720
A
HOH
177
5
HOH
HOH
721
A
HOH
27
5
HOH
HOH
722
A
HOH
119
5
HOH
HOH
723
A
HOH
409
5
HOH
HOH
724
A
HOH
413
5
HOH
HOH
725
A
HOH
215
5
HOH
HOH
726
A
HOH
129
5
HOH
HOH
727
A
HOH
54
5
HOH
HOH
728
A
HOH
10
5
HOH
HOH
729
A
HOH
127
5
HOH
HOH
730
A
HOH
243
5
HOH
HOH
731
A
HOH
251
5
HOH
HOH
732
A
HOH
280
5
HOH
HOH
733
A
HOH
331
5
HOH
HOH
734
A
HOH
227
5
HOH
HOH
735
A
HOH
45
5
HOH
HOH
736
A
HOH
180
5
HOH
HOH
737
A
HOH
252
5
HOH
HOH
738
A
HOH
66
5
HOH
HOH
739
A
HOH
131
5
HOH
HOH
740
A
HOH
51
5
HOH
HOH
741
A
HOH
1
5
HOH
HOH
742
A
HOH
38
5
HOH
HOH
743
A
HOH
447
5
HOH
HOH
744
A
HOH
47
5
HOH
HOH
745
A
HOH
32
5
HOH
HOH
746
A
HOH
432
5
HOH
HOH
747
A
HOH
68
5
HOH
HOH
748
A
HOH
217
5
HOH
HOH
749
A
HOH
96
5
HOH
HOH
750
A
HOH
200
5
HOH
HOH
751
A
HOH
476
5
HOH
HOH
752
A
HOH
342
5
HOH
HOH
753
A
HOH
316
5
HOH
HOH
754
A
HOH
212
5
HOH
HOH
755
A
HOH
99
5
HOH
HOH
756
A
HOH
294
5
HOH
HOH
757
A
HOH
348
5
HOH
HOH
758
A
HOH
205
5
HOH
HOH
759
A
HOH
266
5
HOH
HOH
760
A
HOH
406
5
HOH
HOH
761
A
HOH
333
5
HOH
HOH
762
A
HOH
465
5
HOH
HOH
763
A
HOH
395
5
HOH
HOH
764
A
HOH
401
5
HOH
HOH
765
A
HOH
484
5
HOH
HOH
766
A
HOH
109
5
HOH
HOH
767
A
HOH
412
5
HOH
HOH
768
A
HOH
482
5
HOH
HOH
769
A
HOH
326
5
HOH
HOH
770
A
HOH
113
5
HOH
HOH
771
A
HOH
424
5
HOH
HOH
772
A
HOH
490
5
HOH
HOH
773
A
HOH
304
5
HOH
HOH
774
A
HOH
437
5
HOH
HOH
775
A
HOH
429
5
HOH
HOH
776
A
HOH
277
5
HOH
HOH
777
A
HOH
485
5
HOH
HOH
778
A
HOH
281
5
HOH
HOH
779
A
HOH
398
5
HOH
HOH
780
A
HOH
346
5
HOH
HOH
781
A
HOH
339
5
HOH
HOH
782
A
HOH
492
5
HOH
HOH
783
A
HOH
470
5
HOH
HOH
784
A
HOH
440
5
HOH
HOH
785
A
HOH
292
5
HOH
HOH
786
A
HOH
315
5
HOH
HOH
787
A
HOH
473
5
HOH
HOH
788
A
HOH
396
5
HOH
HOH
789
A
HOH
298
5
HOH
HOH
790
A
HOH
296
5
HOH
HOH
791
A
HOH
79
5
HOH
HOH
792
A
HOH
463
5
HOH
HOH
401
B
HOH
29
5
HOH
HOH
402
B
HOH
340
5
HOH
HOH
403
B
HOH
59
5
HOH
HOH
404
B
HOH
426
5
HOH
HOH
405
B
HOH
328
5
HOH
HOH
406
B
HOH
201
5
HOH
HOH
407
B
HOH
122
5
HOH
HOH
408
B
HOH
314
5
HOH
HOH
409
B
HOH
135
5
HOH
HOH
410
B
HOH
112
5
HOH
HOH
411
B
HOH
245
5
HOH
HOH
412
B
HOH
22
5
HOH
HOH
413
B
HOH
28
5
HOH
HOH
414
B
HOH
318
5
HOH
HOH
415
B
HOH
278
5
HOH
HOH
416
B
HOH
20
5
HOH
HOH
417
B
HOH
343
5
HOH
HOH
418
B
HOH
183
5
HOH
HOH
419
B
HOH
321
5
HOH
HOH
420
B
HOH
69
5
HOH
HOH
421
B
HOH
146
5
HOH
HOH
422
B
HOH
189
5
HOH
HOH
423
B
HOH
325
5
HOH
HOH
424
B
HOH
261
5
HOH
HOH
425
B
HOH
196
5
HOH
HOH
426
B
HOH
209
5
HOH
HOH
427
B
HOH
383
5
HOH
HOH
428
B
HOH
111
5
HOH
HOH
429
B
HOH
185
5
HOH
HOH
430
B
HOH
52
5
HOH
HOH
431
B
HOH
248
5
HOH
HOH
432
B
HOH
87
5
HOH
HOH
433
B
HOH
260
5
HOH
HOH
434
B
HOH
72
5
HOH
HOH
435
B
HOH
70
5
HOH
HOH
436
B
HOH
77
5
HOH
HOH
437
B
HOH
226
5
HOH
HOH
438
B
HOH
254
5
HOH
HOH
439
B
HOH
153
5
HOH
HOH
440
B
HOH
92
5
HOH
HOH
441
B
HOH
240
5
HOH
HOH
442
B
HOH
74
5
HOH
HOH
443
B
HOH
295
5
HOH
HOH
444
B
HOH
37
5
HOH
HOH
445
B
HOH
265
5
HOH
HOH
446
B
HOH
329
5
HOH
HOH
447
B
HOH
273
5
HOH
HOH
448
B
HOH
300
5
HOH
HOH
449
B
HOH
175
5
HOH
HOH
450
B
HOH
221
5
HOH
HOH
451
B
HOH
449
5
HOH
HOH
452
B
HOH
355
5
HOH
HOH
453
B
HOH
125
5
HOH
HOH
454
B
HOH
157
5
HOH
HOH
455
B
HOH
250
5
HOH
HOH
456
B
HOH
53
5
HOH
HOH
457
B
HOH
233
5
HOH
HOH
458
B
HOH
108
5
HOH
HOH
459
B
HOH
168
5
HOH
HOH
460
B
HOH
142
5
HOH
HOH
461
B
HOH
158
5
HOH
HOH
462
B
HOH
151
5
HOH
HOH
463
B
HOH
48
5
HOH
HOH
464
B
HOH
258
5
HOH
HOH
465
B
HOH
402
5
HOH
HOH
466
B
HOH
446
5
HOH
HOH
467
B
HOH
289
5
HOH
HOH
468
B
HOH
71
5
HOH
HOH
469
B
HOH
469
5
HOH
HOH
470
B
HOH
178
5
HOH
HOH
471
B
HOH
17
5
HOH
HOH
472
B
HOH
13
5
HOH
HOH
473
B
HOH
345
5
HOH
HOH
474
B
HOH
50
5
HOH
HOH
475
B
HOH
42
5
HOH
HOH
476
B
HOH
194
5
HOH
HOH
477
B
HOH
415
5
HOH
HOH
478
B
HOH
450
5
HOH
HOH
479
B
HOH
24
5
HOH
HOH
480
B
HOH
230
5
HOH
HOH
481
B
HOH
46
5
HOH
HOH
482
B
HOH
85
5
HOH
HOH
483
B
HOH
198
5
HOH
HOH
484
B
HOH
40
5
HOH
HOH
485
B
HOH
190
5
HOH
HOH
486
B
HOH
255
5
HOH
HOH
487
B
HOH
57
5
HOH
HOH
488
B
HOH
461
5
HOH
HOH
489
B
HOH
58
5
HOH
HOH
490
B
HOH
106
5
HOH
HOH
491
B
HOH
459
5
HOH
HOH
492
B
HOH
75
5
HOH
HOH
493
B
HOH
18
5
HOH
HOH
494
B
HOH
36
5
HOH
HOH
495
B
HOH
39
5
HOH
HOH
496
B
HOH
95
5
HOH
HOH
497
B
HOH
64
5
HOH
HOH
498
B
HOH
279
5
HOH
HOH
499
B
HOH
141
5
HOH
HOH
500
B
HOH
222
5
HOH
HOH
501
B
HOH
336
5
HOH
HOH
502
B
HOH
493
5
HOH
HOH
503
B
HOH
275
5
HOH
HOH
504
B
HOH
272
5
HOH
HOH
505
B
HOH
173
5
HOH
HOH
506
B
HOH
82
5
HOH
HOH
507
B
HOH
65
5
HOH
HOH
508
B
HOH
5
5
HOH
HOH
509
B
HOH
26
5
HOH
HOH
510
B
HOH
202
5
HOH
HOH
511
B
HOH
6
5
HOH
HOH
512
B
HOH
123
5
HOH
HOH
513
B
HOH
100
5
HOH
HOH
514
B
HOH
120
5
HOH
HOH
515
B
HOH
224
5
HOH
HOH
516
B
HOH
21
5
HOH
HOH
517
B
HOH
303
5
HOH
HOH
518
B
HOH
458
5
HOH
HOH
519
B
HOH
291
5
HOH
HOH
520
B
HOH
313
5
HOH
HOH
521
B
HOH
257
5
HOH
HOH
522
B
HOH
287
5
HOH
HOH
523
B
HOH
462
5
HOH
HOH
524
B
HOH
15
5
HOH
HOH
525
B
HOH
170
5
HOH
HOH
526
B
HOH
211
5
HOH
HOH
527
B
HOH
488
5
HOH
HOH
528
B
HOH
124
5
HOH
HOH
529
B
HOH
172
5
HOH
HOH
530
B
HOH
195
5
HOH
HOH
531
B
HOH
107
5
HOH
HOH
532
B
HOH
324
5
HOH
HOH
533
B
HOH
203
5
HOH
HOH
534
B
HOH
19
5
HOH
HOH
535
B
HOH
155
5
HOH
HOH
536
B
HOH
228
5
HOH
HOH
537
B
HOH
12
5
HOH
HOH
538
B
HOH
97
5
HOH
HOH
539
B
HOH
182
5
HOH
HOH
540
B
HOH
204
5
HOH
HOH
541
B
HOH
3
5
HOH
HOH
542
B
HOH
216
5
HOH
HOH
543
B
HOH
41
5
HOH
HOH
544
B
HOH
154
5
HOH
HOH
545
B
HOH
102
5
HOH
HOH
546
B
HOH
61
5
HOH
HOH
547
B
HOH
262
5
HOH
HOH
548
B
HOH
188
5
HOH
HOH
549
B
HOH
55
5
HOH
HOH
550
B
HOH
94
5
HOH
HOH
551
B
HOH
139
5
HOH
HOH
552
B
HOH
232
5
HOH
HOH
553
B
HOH
9
5
HOH
HOH
554
B
HOH
105
5
HOH
HOH
555
B
HOH
297
5
HOH
HOH
556
B
HOH
330
5
HOH
HOH
557
B
HOH
62
5
HOH
HOH
558
B
HOH
193
5
HOH
HOH
559
B
HOH
306
5
HOH
HOH
560
B
HOH
425
5
HOH
HOH
561
B
HOH
84
5
HOH
HOH
562
B
HOH
323
5
HOH
HOH
563
B
HOH
114
5
HOH
HOH
564
B
HOH
225
5
HOH
HOH
565
B
HOH
234
5
HOH
HOH
566
B
HOH
91
5
HOH
HOH
567
B
HOH
128
5
HOH
HOH
568
B
HOH
414
5
HOH
HOH
569
B
HOH
67
5
HOH
HOH
570
B
HOH
433
5
HOH
HOH
571
B
HOH
30
5
HOH
HOH
572
B
HOH
344
5
HOH
HOH
573
B
HOH
197
5
HOH
HOH
574
B
HOH
2
5
HOH
HOH
575
B
HOH
270
5
HOH
HOH
576
B
HOH
163
5
HOH
HOH
577
B
HOH
167
5
HOH
HOH
578
B
HOH
268
5
HOH
HOH
579
B
HOH
455
5
HOH
HOH
580
B
HOH
133
5
HOH
HOH
581
B
HOH
332
5
HOH
HOH
582
B
HOH
171
5
HOH
HOH
583
B
HOH
238
5
HOH
HOH
584
B
HOH
144
5
HOH
HOH
585
B
HOH
274
5
HOH
HOH
586
B
HOH
293
5
HOH
HOH
587
B
HOH
286
5
HOH
HOH
588
B
HOH
474
5
HOH
HOH
589
B
HOH
299
5
HOH
HOH
590
B
HOH
327
5
HOH
HOH
591
B
HOH
90
5
HOH
HOH
592
B
HOH
307
5
HOH
HOH
593
B
HOH
319
5
HOH
HOH
594
B
HOH
301
5
HOH
HOH
595
B
HOH
285
5
HOH
HOH
596
B
HOH
283
5
HOH
HOH
597
B
HOH
161
5
HOH
HOH
598
B
HOH
145
5
HOH
HOH
599
B
HOH
460
5
HOH
HOH
600
B
HOH
466
5
HOH
HOH
601
B
HOH
76
5
HOH
HOH
602
B
HOH
263
5
HOH
HOH
603
B
HOH
101
5
HOH
HOH
604
B
HOH
218
5
HOH
HOH
605
B
HOH
310
5
HOH
HOH
606
B
HOH
305
5
HOH
HOH
607
B
HOH
421
5
HOH
HOH
608
B
HOH
44
5
HOH
HOH
609
B
HOH
290
5
HOH
HOH
610
B
HOH
184
5
HOH
HOH
611
B
HOH
118
5
HOH
HOH
612
B
HOH
241
5
HOH
HOH
613
B
HOH
63
5
HOH
HOH
614
B
HOH
334
5
HOH
HOH
615
B
HOH
347
5
HOH
HOH
616
B
HOH
453
5
HOH
HOH
617
B
HOH
400
5
HOH
HOH
618
B
HOH
335
5
HOH
HOH
619
B
HOH
416
5
HOH
HOH
620
B
HOH
276
5
HOH
HOH
621
B
HOH
431
5
HOH
HOH
622
B
HOH
441
5
HOH
HOH
623
B
HOH
312
5
HOH
HOH
624
B
HOH
311
5
HOH
HOH
625
B
HOH
337
5
HOH
HOH
626
B
HOH
159
5
HOH
HOH
627
B
HOH
186
5
HOH
HOH
628
B
HOH
134
5
HOH
HOH
629
B
HOH
405
5
HOH
HOH
630
B
HOH
136
5
HOH
HOH
631
B
HOH
362
5
HOH
HOH
301
C
HOH
448
5
HOH
HOH
302
C
HOH
369
5
HOH
HOH
303
C
HOH
386
5
HOH
HOH
304
C
HOH
353
5
HOH
HOH
305
C
HOH
442
5
HOH
HOH
306
C
HOH
356
5
HOH
HOH
307
C
HOH
468
5
HOH
HOH
308
C
HOH
360
5
HOH
HOH
309
C
HOH
389
5
HOH
HOH
310
C
HOH
390
5
HOH
HOH
311
C
HOH
499
5
HOH
HOH
312
C
HOH
481
5
HOH
HOH
313
C
HOH
393
5
HOH
HOH
314
C
HOH
358
5
HOH
HOH
315
C
HOH
478
5
HOH
HOH
316
C
HOH
444
5
HOH
HOH
317
C
HOH
351
5
HOH
HOH
318
C
HOH
363
5
HOH
HOH
319
C
HOH
366
5
HOH
HOH
320
C
HOH
479
5
HOH
HOH
321
C
HOH
380
5
HOH
HOH
322
C
HOH
350
5
HOH
HOH
323
C
HOH
419
5
HOH
HOH
324
C
HOH
392
5
HOH
HOH
325
C
HOH
411
5
HOH
HOH
326
C
HOH
483
5
HOH
HOH
327
C
HOH
404
5
HOH
HOH
328
C
HOH
403
5
HOH
HOH
329
C
HOH
495
5
HOH
HOH
330
C
HOH
370
5
HOH
HOH
331
C
HOH
376
5
HOH
HOH
332
C
HOH
384
5
HOH
HOH
333
C
HOH
407
5
HOH
HOH
334
C
HOH
253
5
HOH
HOH
335
C
HOH
422
5
HOH
HOH
336
C
HOH
434
5
HOH
HOH
337
C
HOH
359
5
HOH
HOH
338
C
HOH
354
5
HOH
HOH
339
C
HOH
357
5
HOH
HOH
340
C
HOH
367
5
HOH
HOH
341
C
HOH
372
5
HOH
HOH
342
C
HOH
399
5
HOH
HOH
343
C
HOH
368
5
HOH
HOH
344
C
HOH
387
5
HOH
HOH
345
C
HOH
477
5
HOH
HOH
346
C
HOH
452
5
HOH
HOH
347
C
HOH
435
5
HOH
HOH
348
C
HOH
352
5
HOH
HOH
349
C
HOH
373
5
HOH
HOH
350
C
HOH
475
5
HOH
HOH
351
C
HOH
391
5
HOH
HOH
352
C
HOH
498
5
HOH
HOH
353
C
HOH
423
5
HOH
HOH
354
C
HOH
378
5
HOH
HOH
355
C
HOH
374
5
HOH
HOH
356
C
HOH
436
5
HOH
HOH
357
C
HOH
486
5
HOH
HOH
358
C
HOH
164
5
HOH
HOH
359
C
HOH
388
5
HOH
HOH
360
C
HOH
489
5
HOH
HOH
361
C
HOH
494
5
HOH
HOH
362
C
HOH
382
5
HOH
HOH
363
C
HOH
497
5
HOH
HOH
364
C
HOH
381
5
HOH
HOH
365
C
HOH
496
5
HOH
HOH
366
C
HOH
385
5
HOH
HOH
367
C
HOH
371
5
HOH
HOH
368
C
HOH
487
5
HOH
HOH
369
C
GLN
1
n
1
GLN
1
A
VAL
2
n
2
VAL
2
A
GLN
3
n
3
GLN
3
A
LEU
4
n
4
LEU
4
A
GLN
5
n
5
GLN
5
A
GLU
6
n
6
GLU
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
PRO
9
n
9
PRO
9
A
GLY
10
n
10
GLY
10
A
LEU
11
n
11
LEU
11
A
VAL
12
n
12
VAL
12
A
LYS
13
n
13
LYS
13
A
PRO
14
n
14
PRO
14
A
SER
15
n
15
SER
15
A
GLU
16
n
16
GLU
16
A
THR
17
n
17
THR
17
A
LEU
18
n
18
LEU
18
A
SER
19
n
19
SER
19
A
LEU
20
n
20
LEU
20
A
THR
21
n
21
THR
21
A
CYS
22
n
22
CYS
22
A
ALA
23
n
23
ALA
23
A
VAL
24
n
24
VAL
24
A
SER
25
n
25
SER
25
A
GLY
26
n
26
GLY
26
A
HIS
27
n
27
HIS
27
A
SER
28
n
28
SER
28
A
ILE
29
n
29
ILE
29
A
ARG
30
n
30
ARG
30
A
GLY
31
n
31
GLY
31
A
SER
32
n
32
SER
32
A
TYR
33
n
33
TYR
33
A
PHE
34
n
34
PHE
34
A
TRP
35
n
35
TRP
35
A
GLY
36
n
36
GLY
36
A
TRP
37
n
37
TRP
37
A
ILE
38
n
38
ILE
38
A
ARG
39
n
39
ARG
39
A
GLN
40
n
40
GLN
40
A
PRO
41
n
41
PRO
41
A
PRO
42
n
42
PRO
42
A
GLY
43
n
43
GLY
43
A
ARG
44
n
44
ARG
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
GLU
47
n
47
GLU
47
A
TRP
48
n
48
TRP
48
A
ILE
49
n
49
ILE
49
A
GLY
50
n
50
GLY
50
A
SER
51
n
51
SER
51
A
ILE
52
n
52
ILE
52
A
TYR
53
n
53
TYR
53
A
HIS
54
n
54
HIS
54
A
SER
55
n
55
SER
55
A
GLY
56
n
56
GLY
56
A
SER
57
n
57
SER
57
A
THR
58
n
58
THR
58
A
TYR
59
n
59
TYR
59
A
THR
60
n
60
THR
60
A
ASN
61
n
61
ASN
61
A
PRO
62
n
62
PRO
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
LYS
65
n
65
LYS
65
A
SER
66
n
66
SER
66
A
ARG
67
n
67
ARG
67
A
ALA
68
n
68
ALA
68
A
THR
69
n
69
THR
69
A
ILE
70
n
70
ILE
70
A
SER
71
n
71
SER
71
A
VAL
72
n
72
VAL
72
A
ASP
73
n
73
ASP
73
A
THR
74
n
74
THR
74
A
SER
75
n
75
SER
75
A
LYS
76
n
76
LYS
76
A
ASN
77
n
77
ASN
77
A
GLN
78
n
78
GLN
78
A
PHE
79
n
79
PHE
79
A
SER
80
n
80
SER
80
A
LEU
81
n
81
LEU
81
A
LYS
82
n
82
LYS
82
A
LEU
83
n
83
LEU
83
A
ASN
84
n
84
ASN
84
A
SER
85
n
85
SER
85
A
VAL
86
n
86
VAL
86
A
THR
87
n
87
THR
87
A
ALA
88
n
88
ALA
88
A
ALA
89
n
89
ALA
89
A
ASP
90
n
90
ASP
90
A
THR
91
n
91
THR
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
TYR
94
n
94
TYR
94
A
TYR
95
n
95
TYR
95
A
CYS
96
n
96
CYS
96
A
ALA
97
n
97
ALA
97
A
ARG
98
n
98
ARG
98
A
ASP
99
n
99
ASP
99
A
LEU
100
n
100
LEU
100
A
ASP
101
n
101
ASP
101
A
ILE
102
n
102
ILE
102
A
ALA
103
n
103
ALA
103
A
THR
104
n
104
THR
104
A
THR
105
n
105
THR
105
A
ARG
106
n
106
ARG
106
A
ASP
107
n
107
ASP
107
A
TYR
108
n
108
TYR
108
A
TRP
109
n
109
TRP
109
A
GLY
110
n
110
GLY
110
A
GLN
111
n
111
GLN
111
A
GLY
112
n
112
GLY
112
A
THR
113
n
113
THR
113
A
LEU
114
n
114
LEU
114
A
VAL
115
n
115
VAL
115
A
THR
116
n
116
THR
116
A
VAL
117
n
117
VAL
117
A
SER
118
n
118
SER
118
A
SER
119
n
119
SER
119
A
ALA
120
n
120
ALA
120
A
SER
121
n
121
SER
121
A
THR
122
n
122
THR
122
A
LYS
123
n
123
LYS
123
A
GLY
124
n
124
GLY
124
A
PRO
125
n
125
PRO
125
A
SER
126
n
126
SER
126
A
VAL
127
n
127
VAL
127
A
PHE
128
n
128
PHE
128
A
PRO
129
n
129
PRO
129
A
LEU
130
n
130
LEU
130
A
ALA
131
n
131
ALA
131
A
PRO
132
n
132
PRO
132
A
CYS
133
n
133
CYS
133
A
SER
134
n
134
SER
134
A
ARG
135
n
135
ARG
135
A
SER
136
n
136
SER
136
A
THR
137
n
137
THR
137
A
SER
138
n
138
SER
138
A
GLU
139
n
139
GLU
139
A
SER
140
n
140
SER
140
A
THR
141
n
141
THR
141
A
ALA
142
n
142
ALA
142
A
ALA
143
n
143
ALA
143
A
LEU
144
n
144
LEU
144
A
GLY
145
n
145
GLY
145
A
CYS
146
n
146
CYS
146
A
LEU
147
n
147
LEU
147
A
VAL
148
n
148
VAL
148
A
LYS
149
n
149
LYS
149
A
ASP
150
n
150
ASP
150
A
TYR
151
n
151
TYR
151
A
PHE
152
n
152
PHE
152
A
PRO
153
n
153
PRO
153
A
GLU
154
n
154
GLU
154
A
PRO
155
n
155
PRO
155
A
VAL
156
n
156
VAL
156
A
THR
157
n
157
THR
157
A
VAL
158
n
158
VAL
158
A
SER
159
n
159
SER
159
A
TRP
160
n
160
TRP
160
A
ASN
161
n
161
ASN
161
A
SER
162
n
162
SER
162
A
GLY
163
n
163
GLY
163
A
ALA
164
n
164
ALA
164
A
LEU
165
n
165
LEU
165
A
THR
166
n
166
THR
166
A
SER
167
n
167
SER
167
A
GLY
168
n
168
GLY
168
A
VAL
169
n
169
VAL
169
A
HIS
170
n
170
HIS
170
A
THR
171
n
171
THR
171
A
PHE
172
n
172
PHE
172
A
PRO
173
n
173
PRO
173
A
ALA
174
n
174
ALA
174
A
VAL
175
n
175
VAL
175
A
LEU
176
n
176
LEU
176
A
GLN
177
n
177
GLN
177
A
SER
178
n
178
SER
178
A
SER
179
n
179
SER
179
A
GLY
180
n
180
GLY
180
A
LEU
181
n
181
LEU
181
A
TYR
182
n
182
TYR
182
A
SER
183
n
183
SER
183
A
LEU
184
n
184
LEU
184
A
SER
185
n
185
SER
185
A
SER
186
n
186
SER
186
A
VAL
187
n
187
VAL
187
A
VAL
188
n
188
VAL
188
A
THR
189
n
189
THR
189
A
VAL
190
n
190
VAL
190
A
PRO
191
n
191
PRO
191
A
SER
192
n
192
SER
192
A
SER
193
n
193
SER
193
A
SER
194
n
194
SER
194
A
LEU
195
n
195
LEU
195
A
GLY
196
n
196
GLY
196
A
THR
197
n
197
THR
197
A
LYS
198
n
198
LYS
198
A
THR
199
n
199
THR
199
A
TYR
200
n
200
TYR
200
A
THR
201
n
201
THR
201
A
CYS
202
n
202
CYS
202
A
ASN
203
n
203
ASN
203
A
VAL
204
n
204
VAL
204
A
ASP
205
n
205
ASP
205
A
HIS
206
n
206
HIS
206
A
LYS
207
n
207
LYS
207
A
PRO
208
n
208
PRO
208
A
SER
209
n
209
SER
209
A
ASN
210
n
210
ASN
210
A
THR
211
n
211
THR
211
A
LYS
212
n
212
LYS
212
A
VAL
213
n
213
VAL
213
A
ASP
214
n
214
ASP
214
A
LYS
215
n
215
LYS
215
A
ARG
216
n
216
ARG
216
A
VAL
217
n
217
VAL
217
A
GLU
218
n
218
GLU
218
A
ASP
1
n
1
ASP
1
B
ILE
2
n
2
ILE
2
B
GLN
3
n
3
GLN
3
B
LEU
4
n
4
LEU
4
B
THR
5
n
5
THR
5
B
GLN
6
n
6
GLN
6
B
SER
7
n
7
SER
7
B
PRO
8
n
8
PRO
8
B
SER
9
n
9
SER
9
B
PHE
10
n
10
PHE
10
B
LEU
11
n
11
LEU
11
B
SER
12
n
12
SER
12
B
ALA
13
n
13
ALA
13
B
SER
14
n
14
SER
14
B
VAL
15
n
15
VAL
15
B
GLY
16
n
16
GLY
16
B
ASP
17
n
17
ASP
17
B
ARG
18
n
18
ARG
18
B
VAL
19
n
19
VAL
19
B
THR
20
n
20
THR
20
B
ILE
21
n
21
ILE
21
B
ILE
22
n
22
ILE
22
B
CYS
23
n
23
CYS
23
B
ARG
24
n
24
ARG
24
B
ALA
25
n
25
ALA
25
B
SER
26
n
26
SER
26
B
GLN
27
n
27
GLN
27
B
GLY
28
n
28
GLY
28
B
ILE
29
n
29
ILE
29
B
ASN
30
n
30
ASN
30
B
ASN
31
n
31
ASN
31
B
TYR
32
n
32
TYR
32
B
LEU
33
n
33
LEU
33
B
ALA
34
n
34
ALA
34
B
TRP
35
n
35
TRP
35
B
TYR
36
n
36
TYR
36
B
GLN
37
n
37
GLN
37
B
GLN
38
n
38
GLN
38
B
LYS
39
n
39
LYS
39
B
PRO
40
n
40
PRO
40
B
GLY
41
n
41
GLY
41
B
LYS
42
n
42
LYS
42
B
ALA
43
n
43
ALA
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
LEU
46
n
46
LEU
46
B
LEU
47
n
47
LEU
47
B
ILE
48
n
48
ILE
48
B
TYR
49
n
49
TYR
49
B
ALA
50
n
50
ALA
50
B
ALA
51
n
51
ALA
51
B
SER
52
n
52
SER
52
B
THR
53
n
53
THR
53
B
LEU
54
n
54
LEU
54
B
GLN
55
n
55
GLN
55
B
SER
56
n
56
SER
56
B
GLY
57
n
57
GLY
57
B
VAL
58
n
58
VAL
58
B
PRO
59
n
59
PRO
59
B
SER
60
n
60
SER
60
B
ARG
61
n
61
ARG
61
B
PHE
62
n
62
PHE
62
B
SER
63
n
63
SER
63
B
GLY
64
n
64
GLY
64
B
SER
65
n
65
SER
65
B
GLY
66
n
66
GLY
66
B
SER
67
n
67
SER
67
B
GLY
68
n
68
GLY
68
B
THR
69
n
69
THR
69
B
GLU
70
n
70
GLU
70
B
PHE
71
n
71
PHE
71
B
THR
72
n
72
THR
72
B
LEU
73
n
73
LEU
73
B
THR
74
n
74
THR
74
B
ILE
75
n
75
ILE
75
B
SER
76
n
76
SER
76
B
SER
77
n
77
SER
77
B
LEU
78
n
78
LEU
78
B
GLN
79
n
79
GLN
79
B
PRO
80
n
80
PRO
80
B
GLU
81
n
81
GLU
81
B
ASP
82
n
82
ASP
82
B
PHE
83
n
83
PHE
83
B
ALA
84
n
84
ALA
84
B
THR
85
n
85
THR
85
B
TYR
86
n
86
TYR
86
B
TYR
87
n
87
TYR
87
B
CYS
88
n
88
CYS
88
B
GLN
89
n
89
GLN
89
B
GLN
90
n
90
GLN
90
B
LEU
91
n
91
LEU
91
B
ASP
92
n
92
ASP
92
B
SER
93
n
93
SER
93
B
TYR
94
n
94
TYR
94
B
PRO
95
n
95
PRO
95
B
ARG
96
n
96
ARG
96
B
THR
97
n
97
THR
97
B
PHE
98
n
98
PHE
98
B
GLY
99
n
99
GLY
99
B
GLN
100
n
100
GLN
100
B
GLY
101
n
101
GLY
101
B
THR
102
n
102
THR
102
B
LYS
103
n
103
LYS
103
B
VAL
104
n
104
VAL
104
B
GLU
105
n
105
GLU
105
B
ILE
106
n
106
ILE
106
B
LYS
107
n
107
LYS
107
B
ARG
108
n
108
ARG
108
B
THR
109
n
109
THR
109
B
VAL
110
n
110
VAL
110
B
ALA
111
n
111
ALA
111
B
ALA
112
n
112
ALA
112
B
PRO
113
n
113
PRO
113
B
SER
114
n
114
SER
114
B
VAL
115
n
115
VAL
115
B
PHE
116
n
116
PHE
116
B
ILE
117
n
117
ILE
117
B
PHE
118
n
118
PHE
118
B
PRO
119
n
119
PRO
119
B
PRO
120
n
120
PRO
120
B
SER
121
n
121
SER
121
B
ASP
122
n
122
ASP
122
B
GLU
123
n
123
GLU
123
B
GLN
124
n
124
GLN
124
B
LEU
125
n
125
LEU
125
B
LYS
126
n
126
LYS
126
B
SER
127
n
127
SER
127
B
GLY
128
n
128
GLY
128
B
THR
129
n
129
THR
129
B
ALA
130
n
130
ALA
130
B
SER
131
n
131
SER
131
B
VAL
132
n
132
VAL
132
B
VAL
133
n
133
VAL
133
B
CYS
134
n
134
CYS
134
B
LEU
135
n
135
LEU
135
B
LEU
136
n
136
LEU
136
B
ASN
137
n
137
ASN
137
B
ASN
138
n
138
ASN
138
B
PHE
139
n
139
PHE
139
B
TYR
140
n
140
TYR
140
B
PRO
141
n
141
PRO
141
B
ARG
142
n
142
ARG
142
B
GLU
143
n
143
GLU
143
B
ALA
144
n
144
ALA
144
B
LYS
145
n
145
LYS
145
B
VAL
146
n
146
VAL
146
B
GLN
147
n
147
GLN
147
B
TRP
148
n
148
TRP
148
B
LYS
149
n
149
LYS
149
B
VAL
150
n
150
VAL
150
B
ASP
151
n
151
ASP
151
B
ASN
152
n
152
ASN
152
B
ALA
153
n
153
ALA
153
B
LEU
154
n
154
LEU
154
B
GLN
155
n
155
GLN
155
B
SER
156
n
156
SER
156
B
GLY
157
n
157
GLY
157
B
ASN
158
n
158
ASN
158
B
SER
159
n
159
SER
159
B
GLN
160
n
160
GLN
160
B
GLU
161
n
161
GLU
161
B
SER
162
n
162
SER
162
B
VAL
163
n
163
VAL
163
B
THR
164
n
164
THR
164
B
GLU
165
n
165
GLU
165
B
GLN
166
n
166
GLN
166
B
ASP
167
n
167
ASP
167
B
SER
168
n
168
SER
168
B
LYS
169
n
169
LYS
169
B
ASP
170
n
170
ASP
170
B
SER
171
n
171
SER
171
B
THR
172
n
172
THR
172
B
TYR
173
n
173
TYR
173
B
SER
174
n
174
SER
174
B
LEU
175
n
175
LEU
175
B
SER
176
n
176
SER
176
B
SER
177
n
177
SER
177
B
THR
178
n
178
THR
178
B
LEU
179
n
179
LEU
179
B
THR
180
n
180
THR
180
B
LEU
181
n
181
LEU
181
B
SER
182
n
182
SER
182
B
LYS
183
n
183
LYS
183
B
ALA
184
n
184
ALA
184
B
ASP
185
n
185
ASP
185
B
TYR
186
n
186
TYR
186
B
GLU
187
n
187
GLU
187
B
LYS
188
n
188
LYS
188
B
HIS
189
n
189
HIS
189
B
LYS
190
n
190
LYS
190
B
VAL
191
n
191
VAL
191
B
TYR
192
n
192
TYR
192
B
ALA
193
n
193
ALA
193
B
CYS
194
n
194
CYS
194
B
GLU
195
n
195
GLU
195
B
VAL
196
n
196
VAL
196
B
THR
197
n
197
THR
197
B
HIS
198
n
198
HIS
198
B
GLN
199
n
199
GLN
199
B
GLY
200
n
200
GLY
200
B
LEU
201
n
201
LEU
201
B
SER
202
n
202
SER
202
B
SER
203
n
203
SER
203
B
PRO
204
n
204
PRO
204
B
VAL
205
n
205
VAL
205
B
THR
206
n
206
THR
206
B
LYS
207
n
207
LYS
207
B
SER
208
n
208
SER
208
B
PHE
209
n
209
PHE
209
B
ASN
210
n
210
ASN
210
B
ARG
211
n
211
ARG
211
B
GLY
212
n
212
GLY
212
B
GLU
213
n
213
GLU
213
B
n
214
214
B
n
1
25
C
n
2
26
C
n
3
27
C
n
4
28
C
n
5
29
C
n
6
30
C
n
7
31
C
n
8
32
C
ASN
33
n
9
ASN
33
C
PRO
34
n
10
PRO
34
C
PRO
35
n
11
PRO
35
C
THR
36
n
12
THR
36
C
PHE
37
n
13
PHE
37
C
SER
38
n
14
SER
38
C
PRO
39
n
15
PRO
39
C
ALA
40
n
16
ALA
40
C
LEU
41
n
17
LEU
41
C
LEU
42
n
18
LEU
42
C
VAL
43
n
19
VAL
43
C
VAL
44
n
20
VAL
44
C
THR
45
n
21
THR
45
C
GLU
46
n
22
GLU
46
C
GLY
47
n
23
GLY
47
C
ASP
48
n
24
ASP
48
C
ASN
49
n
25
ASN
49
C
ALA
50
n
26
ALA
50
C
THR
51
n
27
THR
51
C
PHE
52
n
28
PHE
52
C
THR
53
n
29
THR
53
C
CYS
54
n
30
CYS
54
C
SER
55
n
31
SER
55
C
PHE
56
n
32
PHE
56
C
SER
57
n
33
SER
57
C
ASN
58
n
34
ASN
58
C
THR
59
n
35
THR
59
C
SER
60
n
36
SER
60
C
GLU
61
n
37
GLU
61
C
SER
62
n
38
SER
62
C
PHE
63
n
39
PHE
63
C
VAL
64
n
40
VAL
64
C
LEU
65
n
41
LEU
65
C
ASN
66
n
42
ASN
66
C
TRP
67
n
43
TRP
67
C
TYR
68
n
44
TYR
68
C
ARG
69
n
45
ARG
69
C
MET
70
n
46
MET
70
C
SER
71
n
47
SER
71
C
PRO
72
n
48
PRO
72
C
SER
73
n
49
SER
73
C
ASN
74
n
50
ASN
74
C
GLN
75
n
51
GLN
75
C
THR
76
n
52
THR
76
C
ASP
77
n
53
ASP
77
C
LYS
78
n
54
LYS
78
C
LEU
79
n
55
LEU
79
C
ALA
80
n
56
ALA
80
C
ALA
81
n
57
ALA
81
C
PHE
82
n
58
PHE
82
C
PRO
83
n
59
PRO
83
C
GLU
84
n
60
GLU
84
C
ASP
85
n
61
ASP
85
C
ARG
86
n
62
ARG
86
C
SER
87
n
63
SER
87
C
GLN
88
n
64
GLN
88
C
PRO
89
n
65
PRO
89
C
GLY
90
n
66
GLY
90
C
GLN
91
n
67
GLN
91
C
ASP
92
n
68
ASP
92
C
SER
93
n
69
SER
93
C
ARG
94
n
70
ARG
94
C
PHE
95
n
71
PHE
95
C
ARG
96
n
72
ARG
96
C
VAL
97
n
73
VAL
97
C
THR
98
n
74
THR
98
C
GLN
99
n
75
GLN
99
C
LEU
100
n
76
LEU
100
C
PRO
101
n
77
PRO
101
C
ASN
102
n
78
ASN
102
C
GLY
103
n
79
GLY
103
C
ARG
104
n
80
ARG
104
C
ASP
105
n
81
ASP
105
C
PHE
106
n
82
PHE
106
C
HIS
107
n
83
HIS
107
C
MET
108
n
84
MET
108
C
SER
109
n
85
SER
109
C
VAL
110
n
86
VAL
110
C
VAL
111
n
87
VAL
111
C
ARG
112
n
88
ARG
112
C
ALA
113
n
89
ALA
113
C
ARG
114
n
90
ARG
114
C
ARG
115
n
91
ARG
115
C
ASN
116
n
92
ASN
116
C
ASP
117
n
93
ASP
117
C
SER
118
n
94
SER
118
C
GLY
119
n
95
GLY
119
C
THR
120
n
96
THR
120
C
TYR
121
n
97
TYR
121
C
LEU
122
n
98
LEU
122
C
CYS
123
n
99
CYS
123
C
GLY
124
n
100
GLY
124
C
ALA
125
n
101
ALA
125
C
ILE
126
n
102
ILE
126
C
SER
127
n
103
SER
127
C
LEU
128
n
104
LEU
128
C
ALA
129
n
105
ALA
129
C
PRO
130
n
106
PRO
130
C
LYS
131
n
107
LYS
131
C
ALA
132
n
108
ALA
132
C
GLN
133
n
109
GLN
133
C
ILE
134
n
110
ILE
134
C
LYS
135
n
111
LYS
135
C
GLU
136
n
112
GLU
136
C
SER
137
n
113
SER
137
C
LEU
138
n
114
LEU
138
C
ARG
139
n
115
ARG
139
C
ALA
140
n
116
ALA
140
C
GLU
141
n
117
GLU
141
C
LEU
142
n
118
LEU
142
C
ARG
143
n
119
ARG
143
C
VAL
144
n
120
VAL
144
C
THR
145
n
121
THR
145
C
GLU
146
n
122
GLU
146
C
ARG
147
n
123
ARG
147
C
ARG
148
n
124
ARG
148
C
n
125
149
C
n
126
150
C
n
127
151
C
n
128
152
C
n
129
153
C
n
130
154
C
n
131
155
C
n
132
156
C
n
133
157
C
n
134
158
C
n
135
159
C
n
136
160
C
n
137
161
C
n
138
162
C
n
139
163
C
n
140
164
C
n
141
165
C
n
142
166
C
n
143
167
C
author_and_software_defined_assembly
PISA
3
trimeric
surface plasmon resonance
Crystals are washed two times and then dissolved in well solution; running SDS-PAGE indicates two components (PD-1 and Fab).
none
5180
-31
24880
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
3
A
N
GLN
3
A
O
SER
25
A
O
SER
25
A
N
CYS
22
A
N
CYS
22
A
O
PHE
79
A
O
PHE
79
A
O
LYS
82
A
O
LYS
82
A
N
THR
69
A
N
THR
69
A
N
VAL
12
A
N
VAL
12
A
O
THR
116
A
O
THR
116
A
O
THR
113
A
O
THR
113
A
N
TYR
94
A
N
TYR
94
A
O
TYR
95
A
O
TYR
95
A
N
ILE
38
A
N
ILE
38
A
N
TRP
37
A
N
TRP
37
A
O
ILE
49
A
O
ILE
49
A
N
SER
51
A
N
SER
51
A
O
TYR
59
A
O
TYR
59
A
N
VAL
12
A
N
VAL
12
A
O
THR
116
A
O
THR
116
A
O
THR
113
A
O
THR
113
A
N
TYR
94
A
N
TYR
94
A
N
ARG
98
A
N
ARG
98
A
O
TYR
108
A
O
TYR
108
A
N
PHE
128
A
N
PHE
128
A
O
LEU
147
A
O
LEU
147
A
N
VAL
148
A
N
VAL
148
A
O
LEU
184
A
O
LEU
184
A
O
VAL
187
A
O
VAL
187
A
N
HIS
170
A
N
HIS
170
A
N
PHE
128
A
N
PHE
128
A
O
LEU
147
A
O
LEU
147
A
N
VAL
148
A
N
VAL
148
A
O
LEU
184
A
O
LEU
184
A
O
SER
183
A
O
SER
183
A
N
VAL
175
A
N
VAL
175
A
N
SER
159
A
N
SER
159
A
O
ASN
203
A
O
ASN
203
A
N
VAL
204
A
N
VAL
204
A
O
VAL
213
A
O
VAL
213
B
N
SER
7
B
N
SER
7
B
O
ILE
22
B
O
ILE
22
B
N
ILE
21
B
N
ILE
21
B
O
LEU
73
B
O
LEU
73
B
O
THR
74
B
O
THR
74
B
N
SER
63
B
N
SER
63
B
N
LEU
11
B
N
LEU
11
B
O
GLU
105
B
O
GLU
105
B
O
VAL
104
B
O
VAL
104
B
N
ALA
84
B
N
ALA
84
B
O
TYR
87
B
O
TYR
87
B
N
TYR
36
B
N
TYR
36
B
N
TRP
35
B
N
TRP
35
B
O
LEU
47
B
O
LEU
47
B
N
TYR
49
B
N
TYR
49
B
O
THR
53
B
O
THR
53
B
N
LEU
11
B
N
LEU
11
B
O
GLU
105
B
O
GLU
105
B
O
VAL
104
B
O
VAL
104
B
N
ALA
84
B
N
ALA
84
B
N
GLN
90
B
N
GLN
90
B
O
THR
97
B
O
THR
97
B
N
PHE
116
B
N
PHE
116
B
O
LEU
135
B
O
LEU
135
B
N
ALA
130
B
N
ALA
130
B
O
LEU
181
B
O
LEU
181
B
O
THR
178
B
O
THR
178
B
N
GLN
160
B
N
GLN
160
B
O
ALA
153
B
O
ALA
153
B
N
VAL
150
B
N
VAL
150
B
N
GLN
147
B
N
GLN
147
B
O
GLU
195
B
O
GLU
195
B
N
VAL
196
B
N
VAL
196
B
O
VAL
205
B
O
VAL
205
C
N
SER
38
C
N
SER
14
C
O
THR
53
C
O
THR
29
C
N
ALA
50
C
N
ALA
26
C
O
VAL
110
C
O
VAL
86
C
O
SER
109
C
O
SER
85
C
N
ARG
96
C
N
ARG
72
C
N
LEU
42
C
N
LEU
18
C
O
ARG
143
C
O
ARG
119
C
O
LEU
142
C
O
LEU
118
C
N
GLY
119
C
N
GLY
95
C
O
ILE
126
C
O
ILE
102
C
N
VAL
64
C
N
VAL
40
C
N
ARG
69
C
N
ARG
45
C
O
ASP
77
C
O
ASP
53
C
N
LEU
42
C
N
LEU
18
C
O
ARG
143
C
O
ARG
119
C
O
LEU
142
C
O
LEU
118
C
N
GLY
119
C
N
GLY
95
C
N
ALA
125
C
N
ALA
101
C
O
LYS
135
C
O
LYS
111
1
C
CG
ASN
58
C
CG
ASN
34
1
Y
1
C
OD1
ASN
58
C
OD1
ASN
34
1
Y
1
C
ND2
ASN
58
C
ND2
ASN
34
1
Y
1
C
OG1
THR
59
C
OG1
THR
35
1
Y
1
C
CG2
THR
59
C
CG2
THR
35
1
Y
1
C
OG
SER
60
C
OG
SER
36
1
Y
1
C
CG
ARG
96
C
CG
ARG
72
1
Y
1
C
CD
ARG
96
C
CD
ARG
72
1
Y
1
C
NE
ARG
96
C
NE
ARG
72
1
Y
1
C
CZ
ARG
96
C
CZ
ARG
72
1
Y
1
C
NH1
ARG
96
C
NH1
ARG
72
1
Y
1
C
NH2
ARG
96
C
NH2
ARG
72
1
Y
1
C
CG
ARG
148
C
CG
ARG
124
1
Y
1
C
CD
ARG
148
C
CD
ARG
124
1
Y
1
C
NE
ARG
148
C
NE
ARG
124
1
Y
1
C
CZ
ARG
148
C
CZ
ARG
124
1
Y
1
C
NH1
ARG
148
C
NH1
ARG
124
1
Y
1
C
NH2
ARG
148
C
NH2
ARG
124
1
Y
1
B
CYS
214
B
CYS
214
1
Y
1
C
LEU
25
C
LEU
1
1
Y
1
C
ASP
26
C
ASP
2
1
Y
1
C
SER
27
C
SER
3
1
Y
1
C
PRO
28
C
PRO
4
1
Y
1
C
ASP
29
C
ASP
5
1
Y
1
C
ARG
30
C
ARG
6
1
Y
1
C
PRO
31
C
PRO
7
1
Y
1
C
TRP
32
C
TRP
8
1
Y
1
C
ALA
149
C
ALA
125
1
Y
1
C
GLU
150
C
GLU
126
1
Y
1
C
VAL
151
C
VAL
127
1
Y
1
C
PRO
152
C
PRO
128
1
Y
1
C
THR
153
C
THR
129
1
Y
1
C
ALA
154
C
ALA
130
1
Y
1
C
HIS
155
C
HIS
131
1
Y
1
C
PRO
156
C
PRO
132
1
Y
1
C
SER
157
C
SER
133
1
Y
1
C
PRO
158
C
PRO
134
1
Y
1
C
SER
159
C
SER
135
1
Y
1
C
PRO
160
C
PRO
136
1
Y
1
C
ARG
161
C
ARG
137
1
Y
1
C
PRO
162
C
PRO
138
1
Y
1
C
ALA
163
C
ALA
139
1
Y
1
C
GLY
164
C
GLY
140
1
Y
1
C
GLN
165
C
GLN
141
1
Y
1
C
PHE
166
C
PHE
142
1
Y
1
C
GLN
167
C
GLN
143
1
Y
1
A
SER
15
88.23
-11.55
1
A
ASP
150
70.56
62.24
1
B
ASN
30
55.47
-127.54
1
B
ALA
51
70.50
-41.38
1
B
ALA
84
177.57
170.42
1
C
ARG
112
50.08
70.51
16.745
-1.48
0.00
-0.00
1.14
0.00
0.34
0.952
0.928
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21447
0.17106
0.17317
1.70
41.9
3095
59148
5.0
98.20
4.339
0.065
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.156
0.105
0.80
0.80
1.20
5GGS
1.70
41.9
492
4684
16
0
4176
0.004
0.013
4287
0.001
0.017
3846
1.246
1.650
5830
1.194
1.570
8964
7.379
5.000
544
31.137
22.111
199
12.041
15.000
681
16.494
15.000
25
0.046
0.200
576
0.004
0.020
4795
0.001
0.020
888
1.046
1.654
2185
1.045
1.653
2184
1.536
2.479
2726
1.536
2.480
2727
1.098
1.805
2102
1.097
1.806
2103
1.455
2.616
3105
2.796
20.014
4585
2.568
19.605
4485
0.869
3.000
8133
0.258
0.191
1.744
199
3633
20
82.27
1.70
41.9
6K0Y
62244
0.994
0.166
0.053
1
30.2
10.0
98.2
1.061
1.70
1.73
4.7
2532
0.796
0.421
1
7
80.2
refinement
REFMAC
5.8.0238
data reduction
HKL-2000
data scaling
HKL-2000
phasing
AMoRE
N
Study of the interactions of a novel monoclonal antibody, mAb059c, with the hPD-1 receptor
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
PRO
62
A
PRO
62
HELX_P
A
LYS
65
A
LYS
65
5
AA1
4
A
THR
74
A
THR
74
HELX_P
A
LYS
76
A
LYS
76
5
AA2
3
A
THR
87
A
THR
87
HELX_P
A
THR
91
A
THR
91
5
AA3
5
A
SER
162
A
SER
162
HELX_P
A
ALA
164
A
ALA
164
5
AA4
3
A
SER
193
A
SER
193
HELX_P
A
LEU
195
A
LEU
195
5
AA5
3
A
LYS
207
A
LYS
207
HELX_P
A
ASN
210
A
ASN
210
5
AA6
4
B
GLN
79
B
GLN
79
HELX_P
B
PHE
83
B
PHE
83
5
AA7
5
B
SER
121
B
SER
121
HELX_P
B
LYS
126
B
LYS
126
1
AA8
6
B
LYS
183
B
LYS
183
HELX_P
B
LYS
188
B
LYS
188
1
AA9
6
C
PRO
83
C
PRO
59
HELX_P
C
SER
87
C
SER
63
5
AB1
5
C
ARG
114
C
ARG
90
HELX_P
C
SER
118
C
SER
94
5
AB2
5
disulf
2.057
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
96
A
SG
CYS
96
1_555
disulf
2.021
A
CYS
146
A
SG
CYS
146
1_555
A
CYS
202
A
SG
CYS
202
1_555
disulf
2.019
B
CYS
23
B
SG
CYS
23
1_555
B
CYS
88
B
SG
CYS
88
1_555
disulf
2.008
B
CYS
134
B
SG
CYS
134
1_555
B
CYS
194
B
SG
CYS
194
1_555
disulf
2.055
C
CYS
54
C
SG
CYS
30
1_555
C
CYS
123
C
SG
CYS
99
1_555
IMMUNE SYSTEM
PD-1 Complex, Immune Checkpoint, Inhibitor, IMMUNE SYSTEM
A
PHE
152
A
PHE
152
1
A
PRO
153
A
PRO
153
-6.56
A
GLU
154
A
GLU
154
1
A
PRO
155
A
PRO
155
-6.35
B
SER
7
B
SER
7
1
B
PRO
8
B
PRO
8
-3.51
B
TYR
94
B
TYR
94
1
B
PRO
95
B
PRO
95
3.35
B
TYR
140
B
TYR
140
1
B
PRO
141
B
PRO
141
2.64
C
SER
38
C
SER
14
1
C
PRO
39
C
PRO
15
-7.74
C
PHE
82
C
PHE
58
1
C
PRO
83
C
PRO
59
-2.00
C
ALA
129
C
ALA
105
1
C
PRO
130
C
PRO
106
-1.12
6K0Y
PDB
1
1
6K0Y
6K0Y
PDB
2
1
6K0Y
PDCD1_HUMAN
UNP
3
25
Q15116
LDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGR
DFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQ
1
218
6K0Y
1
218
6K0Y
A
1
1
218
1
214
6K0Y
1
214
6K0Y
B
2
1
214
25
167
6K0Y
25
167
Q15116
C
3
1
143
3
CYS
engineered mutation
SER
93
6K0Y
C
Q15116
UNP
93
69
4
6
4
4
4
3
4
6
4
4
4
4
5
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
3
A
GLN
3
A
SER
7
A
SER
7
A
LEU
18
A
LEU
18
A
SER
25
A
SER
25
A
GLN
78
A
GLN
78
A
LEU
83
A
LEU
83
A
ALA
68
A
ALA
68
A
ASP
73
A
ASP
73
A
LEU
11
A
LEU
11
A
VAL
12
A
VAL
12
A
THR
113
A
THR
113
A
VAL
117
A
VAL
117
A
ALA
92
A
ALA
92
A
ARG
98
A
ARG
98
A
TRP
35
A
TRP
35
A
GLN
40
A
GLN
40
A
GLU
47
A
GLU
47
A
ILE
52
A
ILE
52
A
THR
58
A
THR
58
A
THR
60
A
THR
60
A
LEU
11
A
LEU
11
A
VAL
12
A
VAL
12
A
THR
113
A
THR
113
A
VAL
117
A
VAL
117
A
ALA
92
A
ALA
92
A
ARG
98
A
ARG
98
A
TYR
108
A
TYR
108
A
TRP
109
A
TRP
109
A
SER
126
A
SER
126
A
LEU
130
A
LEU
130
A
THR
141
A
THR
141
A
TYR
151
A
TYR
151
A
TYR
182
A
TYR
182
A
PRO
191
A
PRO
191
A
VAL
169
A
VAL
169
A
THR
171
A
THR
171
A
SER
126
A
SER
126
A
LEU
130
A
LEU
130
A
THR
141
A
THR
141
A
TYR
151
A
TYR
151
A
TYR
182
A
TYR
182
A
PRO
191
A
PRO
191
A
VAL
175
A
VAL
175
A
LEU
176
A
LEU
176
A
THR
157
A
THR
157
A
TRP
160
A
TRP
160
A
TYR
200
A
TYR
200
A
HIS
206
A
HIS
206
A
THR
211
A
THR
211
A
VAL
217
A
VAL
217
B
LEU
4
B
LEU
4
B
SER
7
B
SER
7
B
VAL
19
B
VAL
19
B
ALA
25
B
ALA
25
B
GLU
70
B
GLU
70
B
ILE
75
B
ILE
75
B
PHE
62
B
PHE
62
B
SER
65
B
SER
65
B
PHE
10
B
PHE
10
B
SER
14
B
SER
14
B
THR
102
B
THR
102
B
LYS
107
B
LYS
107
B
ALA
84
B
ALA
84
B
GLN
90
B
GLN
90
B
LEU
33
B
LEU
33
B
GLN
38
B
GLN
38
B
LYS
45
B
LYS
45
B
TYR
49
B
TYR
49
B
THR
53
B
THR
53
B
LEU
54
B
LEU
54
B
PHE
10
B
PHE
10
B
SER
14
B
SER
14
B
THR
102
B
THR
102
B
LYS
107
B
LYS
107
B
ALA
84
B
ALA
84
B
GLN
90
B
GLN
90
B
THR
97
B
THR
97
B
PHE
98
B
PHE
98
B
SER
114
B
SER
114
B
PHE
118
B
PHE
118
B
THR
129
B
THR
129
B
PHE
139
B
PHE
139
B
TYR
173
B
TYR
173
B
SER
182
B
SER
182
B
SER
159
B
SER
159
B
VAL
163
B
VAL
163
B
ALA
153
B
ALA
153
B
LEU
154
B
LEU
154
B
LYS
145
B
LYS
145
B
VAL
150
B
VAL
150
B
VAL
191
B
VAL
191
B
THR
197
B
THR
197
B
VAL
205
B
VAL
205
B
ASN
210
B
ASN
210
C
THR
36
C
THR
12
C
SER
38
C
SER
14
C
ALA
50
C
ALA
26
C
SER
55
C
SER
31
C
ASP
105
C
ASP
81
C
VAL
110
C
VAL
86
C
PHE
95
C
PHE
71
C
GLN
99
C
GLN
75
C
LEU
41
C
LEU
17
C
THR
45
C
THR
21
C
ALA
140
C
ALA
116
C
THR
145
C
THR
121
C
GLY
119
C
GLY
95
C
SER
127
C
SER
103
C
PHE
63
C
PHE
39
C
MET
70
C
MET
46
C
THR
76
C
THR
52
C
PHE
82
C
PHE
58
C
LEU
41
C
LEU
17
C
THR
45
C
THR
21
C
ALA
140
C
ALA
116
C
THR
145
C
THR
121
C
GLY
119
C
GLY
95
C
SER
127
C
SER
103
C
GLN
133
C
GLN
109
C
GLU
136
C
GLU
112
binding site for residue EDO A 501
A
EDO
501
Software
11
binding site for residue EDO A 502
A
EDO
502
Software
6
binding site for residue EDO B 301
B
EDO
301
Software
5
binding site for residue EDO C 201
C
EDO
201
Software
4
A
PHE
172
A
PHE
172
11
1_555
A
PRO
173
A
PRO
173
11
1_555
A
VAL
175
A
VAL
175
11
1_555
A
SER
183
A
SER
183
11
1_555
A
LEU
184
A
LEU
184
11
1_555
A
SER
185
A
SER
185
11
1_555
A
HOH
602
H
HOH
11
1_555
A
HOH
724
H
HOH
11
1_555
B
SER
162
B
SER
162
11
1_555
B
SER
176
B
SER
176
11
1_555
B
HOH
401
I
HOH
11
1_555
A
VAL
2
A
VAL
2
6
1_555
A
HIS
27
A
HIS
27
6
1_555
A
TYR
33
A
TYR
33
6
1_555
A
ARG
98
A
ARG
98
6
1_555
A
HOH
611
H
HOH
6
1_555
A
HOH
686
H
HOH
6
1_555
B
LEU
54
B
LEU
54
5
1_555
B
SER
60
B
SER
60
5
1_555
B
PHE
62
B
PHE
62
5
1_555
B
SER
63
B
SER
63
5
1_555
B
HOH
455
I
HOH
5
1_555
C
THR
59
C
THR
35
4
1_555
C
SER
60
C
SER
36
4
1_555
C
GLU
61
C
GLU
37
4
1_555
C
PHE
63
C
PHE
39
4
1_555
19
P 21 21 21