0.015822
0.000000
0.000000
0.000000
0.015822
0.000000
0.000000
0.000000
0.005098
0.000000
0.000000
0.000000
0000-0003-1146-8170
Wu, T.S.
0000-0001-5410-046X
Peng, Y.H.
0000-0001-8957-1763
Hsueh, C.C.
0000-0003-2816-6961
Wu, S.Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
63.205
63.205
196.142
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C19 H23 N7 S
381.498
N-[6-(4-ethylpiperazin-1-yl)-2-methyl-pyrimidin-4-yl]-5-pyridin-4-yl-1,3-thiazol-2-amine
6-(4-ethylpiperazin-1-yl)-2-methyl-N-(5-(pyridin-4-yl)thiazol-2-yl)pyrimidin-4-amine
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
N
N
90
N
C
N
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
C
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
C
Y
105
N
C
Y
106
N
C
Y
107
N
C
Y
108
N
N
Y
109
N
N
N
110
N
N
N
111
N
N
Y
112
N
N
Y
113
N
N
Y
114
N
S
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
Y
192
N
C
Y
193
N
N
Y
194
N
C
Y
195
N
C
Y
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
S
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
S
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
doub
N
98
N
sing
Y
99
N
sing
N
100
N
sing
Y
101
N
doub
Y
102
N
sing
Y
103
N
sing
Y
104
N
doub
Y
105
N
sing
N
106
N
sing
Y
107
N
doub
Y
108
N
sing
Y
109
N
sing
Y
110
N
doub
Y
111
N
doub
Y
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
sing
Y
194
N
doub
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
62
11135
11150
10.1021/acs.jmedchem.9b01229
31721578
Identification of a Multitargeted Tyrosine Kinase Inhibitor for the Treatment of Gastrointestinal Stromal Tumors and Acute Myeloid Leukemia.
2019
10.2210/pdb6kla/pdb
pdb_00006kla
100
1
N
LN2-Cooled Fixed-Exit Double
CCD
2017-03-04
RAYONIX MX300-HS
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
TPS 05A
NSRRC
1.0
SYNCHROTRON
NSRRC BEAMLINE TPS 05A
37669.559
Mast/stem cell growth factor receptor Kit
2.7.10.1
kinase domain, residue 547-693 and 754-935 from UNP P10721, linked with TS
1
man
polymer
381.498
N-[6-(4-ethylpiperazin-1-yl)-2-methyl-pyrimidin-4-yl]-5-pyridin-4-yl-1,3-thiazol-2-amine
1
syn
non-polymer
18.015
water
47
nat
water
SCFR,Piebald trait protein,PBT,Proto-oncogene c-Kit,Tyrosine-protein kinase Kit,p145 c-kit,v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
no
no
YLQKPMYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK
PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL
DLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC
VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI
EKQISESTNHI
YLQKPMYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK
PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL
DLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC
VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI
EKQISESTNHI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
147
KIT, SCFR
9606
Homo sapiens
CRL-1711
Sf9
7108
Spodoptera frugiperda
Baculovirus
Biological sequence
pBacPAK8
Human
sample
148
331
KIT, SCFR
9606
Homo sapiens
CRL-1711
Sf9
7108
Spodoptera frugiperda
Baculovirus
Biological sequence
pBacPAK8
1
2.60
52.69
VAPOR DIFFUSION, HANGING DROP
5.6
PEG 4000, sodium citrate tribasic dihydrate, pH5.6, glycerol
291.15
citation
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2019-11-27
1
1
2020-01-08
1
2
2023-11-22
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBJ
Y
PDBJ
2019-07-30
REL
REL
DJX
DJX
SUBJECT OF INVESTIGATION
DJX
N-[6-(4-ethylpiperazin-1-yl)-2-methyl-pyrimidin-4-yl]-5-pyridin-4-yl-1,3-thiazol-2-amine
HOH
water
Y
1T46
PDB
experimental model
LIG
1
2
DJX
DJX
1001
A
HOH
38
3
HOH
HOH
1101
A
HOH
51
3
HOH
HOH
1102
A
HOH
33
3
HOH
HOH
1103
A
HOH
52
3
HOH
HOH
1104
A
HOH
8
3
HOH
HOH
1105
A
HOH
14
3
HOH
HOH
1106
A
HOH
4
3
HOH
HOH
1107
A
HOH
9
3
HOH
HOH
1108
A
HOH
5
3
HOH
HOH
1109
A
HOH
1
3
HOH
HOH
1110
A
HOH
11
3
HOH
HOH
1111
A
HOH
29
3
HOH
HOH
1112
A
HOH
6
3
HOH
HOH
1113
A
HOH
24
3
HOH
HOH
1114
A
HOH
7
3
HOH
HOH
1115
A
HOH
32
3
HOH
HOH
1116
A
HOH
27
3
HOH
HOH
1117
A
HOH
40
3
HOH
HOH
1118
A
HOH
13
3
HOH
HOH
1119
A
HOH
3
3
HOH
HOH
1120
A
HOH
2
3
HOH
HOH
1121
A
HOH
15
3
HOH
HOH
1122
A
HOH
19
3
HOH
HOH
1123
A
HOH
41
3
HOH
HOH
1124
A
HOH
28
3
HOH
HOH
1125
A
HOH
53
3
HOH
HOH
1126
A
HOH
50
3
HOH
HOH
1127
A
HOH
12
3
HOH
HOH
1128
A
HOH
23
3
HOH
HOH
1129
A
HOH
21
3
HOH
HOH
1130
A
HOH
44
3
HOH
HOH
1131
A
HOH
10
3
HOH
HOH
1132
A
HOH
30
3
HOH
HOH
1133
A
HOH
55
3
HOH
HOH
1134
A
HOH
20
3
HOH
HOH
1135
A
HOH
16
3
HOH
HOH
1136
A
HOH
25
3
HOH
HOH
1137
A
HOH
22
3
HOH
HOH
1138
A
HOH
17
3
HOH
HOH
1139
A
HOH
57
3
HOH
HOH
1140
A
HOH
54
3
HOH
HOH
1141
A
HOH
26
3
HOH
HOH
1142
A
HOH
37
3
HOH
HOH
1143
A
HOH
18
3
HOH
HOH
1144
A
HOH
46
3
HOH
HOH
1145
A
HOH
60
3
HOH
HOH
1146
A
HOH
39
3
HOH
HOH
1147
A
n
1
547
A
n
2
548
A
n
3
549
A
n
4
550
A
n
5
551
A
n
6
552
A
n
7
553
A
GLU
554
n
8
GLU
554
A
VAL
555
n
9
VAL
555
A
GLN
556
n
10
GLN
556
A
TRP
557
n
11
TRP
557
A
LYS
558
n
12
LYS
558
A
VAL
559
n
13
VAL
559
A
VAL
560
n
14
VAL
560
A
GLU
561
n
15
GLU
561
A
GLU
562
n
16
GLU
562
A
ILE
563
n
17
ILE
563
A
ASN
564
n
18
ASN
564
A
GLY
565
n
19
GLY
565
A
ASN
566
n
20
ASN
566
A
ASN
567
n
21
ASN
567
A
TYR
568
n
22
TYR
568
A
VAL
569
n
23
VAL
569
A
TYR
570
n
24
TYR
570
A
ILE
571
n
25
ILE
571
A
ASP
572
n
26
ASP
572
A
PRO
573
n
27
PRO
573
A
THR
574
n
28
THR
574
A
GLN
575
n
29
GLN
575
A
LEU
576
n
30
LEU
576
A
PRO
577
n
31
PRO
577
A
TYR
578
n
32
TYR
578
A
ASP
579
n
33
ASP
579
A
HIS
580
n
34
HIS
580
A
LYS
581
n
35
LYS
581
A
TRP
582
n
36
TRP
582
A
GLU
583
n
37
GLU
583
A
PHE
584
n
38
PHE
584
A
PRO
585
n
39
PRO
585
A
ARG
586
n
40
ARG
586
A
ASN
587
n
41
ASN
587
A
ARG
588
n
42
ARG
588
A
LEU
589
n
43
LEU
589
A
SER
590
n
44
SER
590
A
PHE
591
n
45
PHE
591
A
GLY
592
n
46
GLY
592
A
LYS
593
n
47
LYS
593
A
THR
594
n
48
THR
594
A
LEU
595
n
49
LEU
595
A
GLY
596
n
50
GLY
596
A
ALA
597
n
51
ALA
597
A
GLY
598
n
52
GLY
598
A
ALA
599
n
53
ALA
599
A
PHE
600
n
54
PHE
600
A
GLY
601
n
55
GLY
601
A
LYS
602
n
56
LYS
602
A
VAL
603
n
57
VAL
603
A
VAL
604
n
58
VAL
604
A
GLU
605
n
59
GLU
605
A
ALA
606
n
60
ALA
606
A
THR
607
n
61
THR
607
A
ALA
608
n
62
ALA
608
A
TYR
609
n
63
TYR
609
A
GLY
610
n
64
GLY
610
A
LEU
611
n
65
LEU
611
A
ILE
612
n
66
ILE
612
A
LYS
613
n
67
LYS
613
A
SER
614
n
68
SER
614
A
ASP
615
n
69
ASP
615
A
ALA
616
n
70
ALA
616
A
ALA
617
n
71
ALA
617
A
MET
618
n
72
MET
618
A
THR
619
n
73
THR
619
A
VAL
620
n
74
VAL
620
A
ALA
621
n
75
ALA
621
A
VAL
622
n
76
VAL
622
A
LYS
623
n
77
LYS
623
A
MET
624
n
78
MET
624
A
LEU
625
n
79
LEU
625
A
LYS
626
n
80
LYS
626
A
PRO
627
n
81
PRO
627
A
SER
628
n
82
SER
628
A
ALA
629
n
83
ALA
629
A
HIS
630
n
84
HIS
630
A
LEU
631
n
85
LEU
631
A
THR
632
n
86
THR
632
A
GLU
633
n
87
GLU
633
A
ARG
634
n
88
ARG
634
A
GLU
635
n
89
GLU
635
A
ALA
636
n
90
ALA
636
A
LEU
637
n
91
LEU
637
A
MET
638
n
92
MET
638
A
SER
639
n
93
SER
639
A
GLU
640
n
94
GLU
640
A
LEU
641
n
95
LEU
641
A
LYS
642
n
96
LYS
642
A
VAL
643
n
97
VAL
643
A
LEU
644
n
98
LEU
644
A
SER
645
n
99
SER
645
A
TYR
646
n
100
TYR
646
A
LEU
647
n
101
LEU
647
A
GLY
648
n
102
GLY
648
A
ASN
649
n
103
ASN
649
A
HIS
650
n
104
HIS
650
A
MET
651
n
105
MET
651
A
ASN
652
n
106
ASN
652
A
ILE
653
n
107
ILE
653
A
VAL
654
n
108
VAL
654
A
ASN
655
n
109
ASN
655
A
LEU
656
n
110
LEU
656
A
LEU
657
n
111
LEU
657
A
GLY
658
n
112
GLY
658
A
ALA
659
n
113
ALA
659
A
CYS
660
n
114
CYS
660
A
THR
661
n
115
THR
661
A
ILE
662
n
116
ILE
662
A
GLY
663
n
117
GLY
663
A
GLY
664
n
118
GLY
664
A
PRO
665
n
119
PRO
665
A
THR
666
n
120
THR
666
A
LEU
667
n
121
LEU
667
A
VAL
668
n
122
VAL
668
A
ILE
669
n
123
ILE
669
A
THR
670
n
124
THR
670
A
GLU
671
n
125
GLU
671
A
TYR
672
n
126
TYR
672
A
CYS
673
n
127
CYS
673
A
CYS
674
n
128
CYS
674
A
TYR
675
n
129
TYR
675
A
GLY
676
n
130
GLY
676
A
ASP
677
n
131
ASP
677
A
LEU
678
n
132
LEU
678
A
LEU
679
n
133
LEU
679
A
ASN
680
n
134
ASN
680
A
PHE
681
n
135
PHE
681
A
LEU
682
n
136
LEU
682
A
ARG
683
n
137
ARG
683
A
ARG
684
n
138
ARG
684
A
LYS
685
n
139
LYS
685
A
ARG
686
n
140
ARG
686
A
ASP
687
n
141
ASP
687
A
SER
688
n
142
SER
688
A
n
143
747
A
n
144
748
A
n
145
749
A
n
146
750
A
n
147
751
A
n
148
752
A
n
149
753
A
n
150
754
A
n
151
755
A
n
152
756
A
n
153
757
A
GLU
758
n
154
GLU
758
A
ASP
759
n
155
ASP
759
A
ASP
760
n
156
ASP
760
A
GLU
761
n
157
GLU
761
A
LEU
762
n
158
LEU
762
A
ALA
763
n
159
ALA
763
A
LEU
764
n
160
LEU
764
A
ASP
765
n
161
ASP
765
A
LEU
766
n
162
LEU
766
A
GLU
767
n
163
GLU
767
A
ASP
768
n
164
ASP
768
A
LEU
769
n
165
LEU
769
A
LEU
770
n
166
LEU
770
A
SER
771
n
167
SER
771
A
PHE
772
n
168
PHE
772
A
SER
773
n
169
SER
773
A
TYR
774
n
170
TYR
774
A
GLN
775
n
171
GLN
775
A
VAL
776
n
172
VAL
776
A
ALA
777
n
173
ALA
777
A
LYS
778
n
174
LYS
778
A
GLY
779
n
175
GLY
779
A
MET
780
n
176
MET
780
A
ALA
781
n
177
ALA
781
A
PHE
782
n
178
PHE
782
A
LEU
783
n
179
LEU
783
A
ALA
784
n
180
ALA
784
A
SER
785
n
181
SER
785
A
LYS
786
n
182
LYS
786
A
ASN
787
n
183
ASN
787
A
CYS
788
n
184
CYS
788
A
ILE
789
n
185
ILE
789
A
HIS
790
n
186
HIS
790
A
ARG
791
n
187
ARG
791
A
ASP
792
n
188
ASP
792
A
LEU
793
n
189
LEU
793
A
ALA
794
n
190
ALA
794
A
ALA
795
n
191
ALA
795
A
ARG
796
n
192
ARG
796
A
ASN
797
n
193
ASN
797
A
ILE
798
n
194
ILE
798
A
LEU
799
n
195
LEU
799
A
LEU
800
n
196
LEU
800
A
THR
801
n
197
THR
801
A
HIS
802
n
198
HIS
802
A
GLY
803
n
199
GLY
803
A
ARG
804
n
200
ARG
804
A
ILE
805
n
201
ILE
805
A
THR
806
n
202
THR
806
A
LYS
807
n
203
LYS
807
A
ILE
808
n
204
ILE
808
A
CYS
809
n
205
CYS
809
A
ASP
810
n
206
ASP
810
A
PHE
811
n
207
PHE
811
A
GLY
812
n
208
GLY
812
A
LEU
813
n
209
LEU
813
A
ALA
814
n
210
ALA
814
A
ARG
815
n
211
ARG
815
A
ASP
816
n
212
ASP
816
A
ILE
817
n
213
ILE
817
A
LYS
818
n
214
LYS
818
A
ASN
819
n
215
ASN
819
A
ASP
820
n
216
ASP
820
A
SER
821
n
217
SER
821
A
ASN
822
n
218
ASN
822
A
TYR
823
n
219
TYR
823
A
VAL
824
n
220
VAL
824
A
VAL
825
n
221
VAL
825
A
LYS
826
n
222
LYS
826
A
GLY
827
n
223
GLY
827
A
ASN
828
n
224
ASN
828
A
ALA
829
n
225
ALA
829
A
ARG
830
n
226
ARG
830
A
LEU
831
n
227
LEU
831
A
PRO
832
n
228
PRO
832
A
VAL
833
n
229
VAL
833
A
LYS
834
n
230
LYS
834
A
TRP
835
n
231
TRP
835
A
MET
836
n
232
MET
836
A
ALA
837
n
233
ALA
837
A
PRO
838
n
234
PRO
838
A
GLU
839
n
235
GLU
839
A
SER
840
n
236
SER
840
A
ILE
841
n
237
ILE
841
A
PHE
842
n
238
PHE
842
A
ASN
843
n
239
ASN
843
A
CYS
844
n
240
CYS
844
A
VAL
845
n
241
VAL
845
A
TYR
846
n
242
TYR
846
A
THR
847
n
243
THR
847
A
PHE
848
n
244
PHE
848
A
GLU
849
n
245
GLU
849
A
SER
850
n
246
SER
850
A
ASP
851
n
247
ASP
851
A
VAL
852
n
248
VAL
852
A
TRP
853
n
249
TRP
853
A
SER
854
n
250
SER
854
A
TYR
855
n
251
TYR
855
A
GLY
856
n
252
GLY
856
A
ILE
857
n
253
ILE
857
A
PHE
858
n
254
PHE
858
A
LEU
859
n
255
LEU
859
A
TRP
860
n
256
TRP
860
A
GLU
861
n
257
GLU
861
A
LEU
862
n
258
LEU
862
A
PHE
863
n
259
PHE
863
A
SER
864
n
260
SER
864
A
LEU
865
n
261
LEU
865
A
GLY
866
n
262
GLY
866
A
SER
867
n
263
SER
867
A
SER
868
n
264
SER
868
A
PRO
869
n
265
PRO
869
A
TYR
870
n
266
TYR
870
A
PRO
871
n
267
PRO
871
A
GLY
872
n
268
GLY
872
A
MET
873
n
269
MET
873
A
PRO
874
n
270
PRO
874
A
VAL
875
n
271
VAL
875
A
ASP
876
n
272
ASP
876
A
SER
877
n
273
SER
877
A
LYS
878
n
274
LYS
878
A
PHE
879
n
275
PHE
879
A
TYR
880
n
276
TYR
880
A
LYS
881
n
277
LYS
881
A
MET
882
n
278
MET
882
A
ILE
883
n
279
ILE
883
A
LYS
884
n
280
LYS
884
A
GLU
885
n
281
GLU
885
A
GLY
886
n
282
GLY
886
A
PHE
887
n
283
PHE
887
A
ARG
888
n
284
ARG
888
A
MET
889
n
285
MET
889
A
LEU
890
n
286
LEU
890
A
SER
891
n
287
SER
891
A
PRO
892
n
288
PRO
892
A
GLU
893
n
289
GLU
893
A
HIS
894
n
290
HIS
894
A
ALA
895
n
291
ALA
895
A
PRO
896
n
292
PRO
896
A
ALA
897
n
293
ALA
897
A
GLU
898
n
294
GLU
898
A
MET
899
n
295
MET
899
A
TYR
900
n
296
TYR
900
A
ASP
901
n
297
ASP
901
A
ILE
902
n
298
ILE
902
A
MET
903
n
299
MET
903
A
LYS
904
n
300
LYS
904
A
THR
905
n
301
THR
905
A
CYS
906
n
302
CYS
906
A
TRP
907
n
303
TRP
907
A
ASP
908
n
304
ASP
908
A
ALA
909
n
305
ALA
909
A
ASP
910
n
306
ASP
910
A
PRO
911
n
307
PRO
911
A
LEU
912
n
308
LEU
912
A
LYS
913
n
309
LYS
913
A
ARG
914
n
310
ARG
914
A
PRO
915
n
311
PRO
915
A
THR
916
n
312
THR
916
A
PHE
917
n
313
PHE
917
A
LYS
918
n
314
LYS
918
A
GLN
919
n
315
GLN
919
A
ILE
920
n
316
ILE
920
A
VAL
921
n
317
VAL
921
A
GLN
922
n
318
GLN
922
A
LEU
923
n
319
LEU
923
A
ILE
924
n
320
ILE
924
A
GLU
925
n
321
GLU
925
A
LYS
926
n
322
LYS
926
A
GLN
927
n
323
GLN
927
A
ILE
928
n
324
ILE
928
A
SER
929
n
325
SER
929
A
GLU
930
n
326
GLU
930
A
SER
931
n
327
SER
931
A
n
328
932
A
n
329
933
A
n
330
934
A
n
331
935
A
6.7458
-2.1375
-1.4117
3.0630
3.9911
5.8514
0.3645
1.0469
-0.4644
-0.0115
0.2297
-0.5257
0.9517
0.3462
-0.7087
0.7357
0.0700
-0.1072
0.8679
-0.1144
0.6750
refined
37.1066
0.8431
22.2893
X-RAY DIFFRACTION
7.7325
1.5236
0.4376
8.8777
0.5426
6.1850
-0.0860
-0.7024
0.0625
0.1594
-0.0734
0.2711
0.0188
-0.3397
0.1741
0.2909
0.0093
0.0262
0.3987
0.0131
0.1923
refined
15.9082
11.8215
29.4448
X-RAY DIFFRACTION
9.0952
-4.4118
3.4188
7.8753
-3.0425
3.7584
-0.0282
-0.3857
0.0745
0.7112
0.4203
0.7173
-0.2433
-0.3534
-0.4110
0.3419
-0.0608
0.0555
0.3969
-0.0448
0.2797
refined
13.8936
11.6576
27.1093
X-RAY DIFFRACTION
4.1457
4.1674
-5.5681
9.5754
-6.2012
7.6410
-0.2498
-0.2037
-0.1463
0.3198
0.2388
-0.6424
0.6612
0.3679
-0.1516
0.4297
0.0181
-0.1006
0.4601
-0.0892
0.5932
refined
27.9057
4.4485
28.5177
X-RAY DIFFRACTION
2.0686
0.3080
0.3960
2.8147
2.1527
6.5712
0.0233
0.1131
-0.0521
-0.0695
0.0756
0.2140
0.4559
-0.5966
-0.0943
0.3754
-0.0856
-0.0195
0.3871
0.0301
0.3796
refined
14.8464
5.6474
15.7819
X-RAY DIFFRACTION
3.1207
1.2283
3.9256
5.7805
1.3196
5.9750
-0.3227
0.3732
0.1004
-0.5452
0.2735
0.0838
0.0913
0.0490
-0.0562
0.3814
-0.0718
0.0671
0.4137
-0.0159
0.2567
refined
18.7633
3.5240
0.9536
X-RAY DIFFRACTION
2.4162
-1.2018
0.5282
3.1639
0.5953
3.6242
-0.0138
-0.2656
-0.5235
0.4086
0.2464
-0.0024
1.1050
0.1444
-0.2122
0.7074
-0.0008
-0.0040
0.4285
0.0226
0.4498
refined
22.2022
-10.2875
11.1728
X-RAY DIFFRACTION
6.7392
-1.2989
1.7579
5.4516
0.0830
5.5307
0.1105
0.4513
0.1896
-0.5171
0.1146
-0.5526
0.2385
0.4289
-0.1600
0.4815
-0.0070
0.1513
0.5205
-0.1097
0.4088
refined
28.9063
-3.7273
-2.6573
X-RAY DIFFRACTION
A
554
A
579
X-RAY DIFFRACTION
1
chain 'A' and (resid 554 through 579 )
A
580
A
600
X-RAY DIFFRACTION
2
chain 'A' and (resid 580 through 600 )
A
601
A
630
X-RAY DIFFRACTION
3
chain 'A' and (resid 601 through 630 )
A
631
A
647
X-RAY DIFFRACTION
4
chain 'A' and (resid 631 through 647 )
A
648
A
758
X-RAY DIFFRACTION
5
chain 'A' and (resid 648 through 758 )
A
759
A
786
X-RAY DIFFRACTION
6
chain 'A' and (resid 759 through 786 )
A
787
A
896
X-RAY DIFFRACTION
7
chain 'A' and (resid 787 through 896 )
A
897
A
931
X-RAY DIFFRACTION
8
chain 'A' and (resid 897 through 931 )
author_and_software_defined_assembly
PISA
2
dimeric
monomer
gel filtration
1850
-4
28200
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
569
A
O
VAL
23
A
N
GLU
561
A
N
GLU
15
A
N
LYS
558
A
N
LYS
12
A
O
ILE
789
A
O
ILE
185
A
N
GLY
592
A
N
GLY
46
A
O
GLU
605
A
O
GLU
59
A
N
ALA
608
A
N
ALA
62
A
O
MET
618
A
O
MET
72
A
N
ALA
621
A
N
ALA
75
A
O
THR
670
A
O
THR
124
A
O
ILE
669
A
O
ILE
123
A
N
LEU
657
A
N
LEU
111
A
N
LEU
799
A
N
LEU
195
A
O
LYS
807
A
O
LYS
203
A
N
VAL
824
A
N
VAL
220
A
O
LEU
831
A
O
LEU
227
1
A
CG
GLU
554
A
CG
GLU
8
1
Y
1
A
CD
GLU
554
A
CD
GLU
8
1
Y
1
A
OE1
GLU
554
A
OE1
GLU
8
1
Y
1
A
OE2
GLU
554
A
OE2
GLU
8
1
Y
1
A
CG1
VAL
555
A
CG1
VAL
9
1
Y
1
A
CG2
VAL
555
A
CG2
VAL
9
1
Y
1
A
CG
GLU
561
A
CG
GLU
15
1
Y
1
A
CD
GLU
561
A
CD
GLU
15
1
Y
1
A
OE1
GLU
561
A
OE1
GLU
15
1
Y
1
A
OE2
GLU
561
A
OE2
GLU
15
1
Y
1
A
CG
GLU
562
A
CG
GLU
16
1
Y
1
A
CD
GLU
562
A
CD
GLU
16
1
Y
1
A
OE1
GLU
562
A
OE1
GLU
16
1
Y
1
A
OE2
GLU
562
A
OE2
GLU
16
1
Y
1
A
CG1
ILE
563
A
CG1
ILE
17
1
Y
1
A
CG2
ILE
563
A
CG2
ILE
17
1
Y
1
A
CD1
ILE
563
A
CD1
ILE
17
1
Y
1
A
CG
ASN
564
A
CG
ASN
18
1
Y
1
A
OD1
ASN
564
A
OD1
ASN
18
1
Y
1
A
ND2
ASN
564
A
ND2
ASN
18
1
Y
1
A
CG
ASN
566
A
CG
ASN
20
1
Y
1
A
OD1
ASN
566
A
OD1
ASN
20
1
Y
1
A
ND2
ASN
566
A
ND2
ASN
20
1
Y
1
A
OG
SER
877
A
OG
SER
273
1
Y
1
A
CG
LYS
878
A
CG
LYS
274
1
Y
1
A
CD
LYS
878
A
CD
LYS
274
1
Y
1
A
CE
LYS
878
A
CE
LYS
274
1
Y
1
A
NZ
LYS
878
A
NZ
LYS
274
1
Y
1
A
CG
LYS
881
A
CG
LYS
277
1
Y
1
A
CD
LYS
881
A
CD
LYS
277
1
Y
1
A
CE
LYS
881
A
CE
LYS
277
1
Y
1
A
NZ
LYS
881
A
NZ
LYS
277
1
Y
1
A
CG
LYS
884
A
CG
LYS
280
1
Y
1
A
CD
LYS
884
A
CD
LYS
280
1
Y
1
A
CE
LYS
884
A
CE
LYS
280
1
Y
1
A
NZ
LYS
884
A
NZ
LYS
280
1
Y
1
A
CG
GLU
885
A
CG
GLU
281
1
Y
1
A
CD
GLU
885
A
CD
GLU
281
1
Y
1
A
OE1
GLU
885
A
OE1
GLU
281
1
Y
1
A
OE2
GLU
885
A
OE2
GLU
281
1
Y
1
A
TYR
547
A
TYR
1
1
Y
1
A
LEU
548
A
LEU
2
1
Y
1
A
GLN
549
A
GLN
3
1
Y
1
A
LYS
550
A
LYS
4
1
Y
1
A
PRO
551
A
PRO
5
1
Y
1
A
MET
552
A
MET
6
1
Y
1
A
TYR
553
A
TYR
7
1
Y
1
A
PHE
747
A
PHE
143
1
Y
1
A
ILE
748
A
ILE
144
1
Y
1
A
CYS
749
A
CYS
145
1
Y
1
A
SER
750
A
SER
146
1
Y
1
A
LYS
751
A
LYS
147
1
Y
1
A
THR
752
A
THR
148
1
Y
1
A
SER
753
A
SER
149
1
Y
1
A
PRO
754
A
PRO
150
1
Y
1
A
ALA
755
A
ALA
151
1
Y
1
A
ILE
756
A
ILE
152
1
Y
1
A
MET
757
A
MET
153
1
Y
1
A
THR
932
A
THR
328
1
Y
1
A
ASN
933
A
ASN
329
1
Y
1
A
HIS
934
A
HIS
330
1
Y
1
A
ILE
935
A
ILE
331
1
Y
1
A
ILE
612
-105.91
-60.55
1
A
ARG
791
78.17
-9.51
1
A
ASP
792
-143.58
45.02
148.740
64.5664
29.290
0.2239
0.1830
0.1866
2.1090
29.4820
1996
23419
8.5200
98.2800
0.2400
1
THROUGHOUT
1.340
MOLECULAR REPLACEMENT
26.7800
0.9000
1.1100
1T46
2.1090
29.4820
47
2497
49.86
56.03
27
0
2423
309
0.007
2560
0.830
3465
0.052
374
0.005
438
10.220
2119
0.3688
0.0000
2.1622
125
1339
1
90.0000
0.2657
0.0000
2.2206
138
1474
97.0000
0.2927
0.0000
2.2859
140
1493
98.0000
0.2977
0.0000
2.3597
139
1502
98.0000
0.2697
0.0000
2.4440
140
1508
99.0000
0.2642
0.0000
2.5418
143
1533
99.0000
0.2800
0.0000
2.6574
142
1521
99.0000
0.2856
0.0000
2.7974
142
1524
99.0000
0.2717
0.0000
2.9725
142
1534
99.0000
0.2623
0.0000
3.2018
146
1566
100.0000
0.2130
0.0000
3.5235
145
1564
100.0000
0.2176
0.0000
0.1724
4.0323
147
1571
100.0000
0.1896
0.0000
0.1394
5.0760
148
1595
99.0000
0.1829
0.0000
0.1639
29.4820
159
1699
98.0000
45.250
2.1090
30.000
6KLA
23502
0.066
0.026
0.071
1.051
1
12.500
7.200
98.300
0.621
2.110
2.190
2123
0.899
0.278
0.684
1.059
1
4.900
92.000
0.509
2.190
2.270
2285
0.959
0.214
0.554
1.027
1
6.100
98.100
0.409
2.270
2.380
2294
0.983
0.161
0.440
1.073
1
7.200
99.000
0.340
2.380
2.500
2347
0.986
0.129
0.364
1.031
1
7.800
99.300
0.230
2.500
2.660
2343
0.993
0.086
0.246
1.089
1
8.000
99.300
0.148
2.660
2.860
2351
0.996
0.055
0.158
1.046
1
8.000
99.400
0.094
2.860
3.150
2363
0.996
0.035
0.100
1.058
1
7.900
99.500
0.062
3.150
3.610
2383
0.998
0.024
0.066
1.058
1
7.600
99.500
0.047
3.610
4.540
2444
0.998
0.018
0.050
1.025
1
7.300
99.100
0.043
4.540
30.000
2569
0.998
0.017
0.047
1.038
1
6.800
97.700
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
dev_2621
data extraction
PDB
deposit@deposit.rcsb.org
Apr. 1, 2019
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.25
N
Crystal structure of human c-KIT kinase domain in complex with compound 15a
1
N
N
2
N
N
3
N
N
A
ASP
572
A
ASP
26
HELX_P
A
LEU
576
A
LEU
30
5
AA1
5
A
ASP
579
A
ASP
33
HELX_P
A
GLU
583
A
GLU
37
5
AA2
5
A
PRO
585
A
PRO
39
HELX_P
A
ASN
587
A
ASN
41
5
AA3
3
A
HIS
630
A
HIS
84
HELX_P
A
GLY
648
A
GLY
102
1
AA4
19
A
ASP
677
A
ASP
131
HELX_P
A
SER
688
A
SER
142
1
AA5
12
A
ASP
759
A
ASP
155
HELX_P
A
LYS
786
A
LYS
182
1
AA6
28
A
ALA
794
A
ALA
190
HELX_P
A
ARG
796
A
ARG
192
5
AA7
3
A
HIS
802
A
HIS
198
HELX_P
A
ARG
804
A
ARG
200
5
AA8
3
A
PHE
811
A
PHE
207
HELX_P
A
ARG
815
A
ARG
211
5
AA9
5
A
ASP
816
A
ASP
212
HELX_P
A
ASP
820
A
ASP
216
5
AB1
5
A
PRO
832
A
PRO
228
HELX_P
A
MET
836
A
MET
232
5
AB2
5
A
ALA
837
A
ALA
233
HELX_P
A
CYS
844
A
CYS
240
1
AB3
8
A
THR
847
A
THR
243
HELX_P
A
SER
864
A
SER
260
1
AB4
18
A
ASP
876
A
ASP
272
HELX_P
A
GLU
885
A
GLU
281
1
AB5
10
A
PRO
896
A
PRO
292
HELX_P
A
TRP
907
A
TRP
303
1
AB6
12
A
ASP
910
A
ASP
306
HELX_P
A
ARG
914
A
ARG
310
5
AB7
5
A
THR
916
A
THR
312
HELX_P
A
GLU
930
A
GLU
326
1
AB8
15
TRANSFERASE
tyrosine kinase inhibitor, kinase phosphorylation, ATP competitor, transmembrane receptor protein, TRANSFERASE
KIT_HUMAN
UNP
1
547
P10721
YLQKPMYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK
PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSK
KIT_HUMAN
UNP
1
754
P10721
PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPV
KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLK
RPTFKQIVQLIEKQISESTNHI
547
693
6KLA
547
751
P10721
A
1
1
147
754
935
6KLA
754
935
P10721
A
2
150
331
1
linker
THR
752
6KLA
A
P10721
UNP
148
1
linker
SER
753
6KLA
A
P10721
UNP
149
3
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
568
A
TYR
22
A
TYR
570
A
TYR
24
A
LYS
558
A
LYS
12
A
ILE
563
A
ILE
17
A
CYS
788
A
CYS
184
A
ILE
789
A
ILE
185
A
LEU
589
A
LEU
43
A
ALA
597
A
ALA
51
A
GLY
601
A
GLY
55
A
TYR
609
A
TYR
63
A
ALA
617
A
ALA
71
A
LEU
625
A
LEU
79
A
LEU
667
A
LEU
121
A
GLU
671
A
GLU
125
A
LEU
656
A
LEU
110
A
CYS
660
A
CYS
114
A
ILE
798
A
ILE
194
A
THR
801
A
THR
197
A
ILE
805
A
ILE
201
A
ILE
808
A
ILE
204
A
VAL
824
A
VAL
220
A
LYS
826
A
LYS
222
A
ALA
829
A
ALA
225
A
LEU
831
A
LEU
227
binding site for residue DJX A 1001
A
DJX
1001
Software
11
A
LEU
595
A
LEU
49
11
1_555
A
ALA
621
A
ALA
75
11
1_555
A
LYS
623
A
LYS
77
11
1_555
A
THR
670
A
THR
124
11
1_555
A
GLU
671
A
GLU
125
11
1_555
A
TYR
672
A
TYR
126
11
1_555
A
CYS
673
A
CYS
127
11
1_555
A
GLY
676
A
GLY
130
11
1_555
A
ASP
760
A
ASP
156
11
7_555
A
LEU
799
A
LEU
195
11
1_555
A
ASP
810
A
ASP
206
11
1_555
96
P 43 21 2