data_6M5B # _entry.id 6M5B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M5B pdb_00006m5b 10.2210/pdb6m5b/pdb WWPDB D_1300015565 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-24 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 7 2 'Structure model' '_pdbx_struct_conn_angle.value' 8 2 'Structure model' '_struct_conn.pdbx_dist_value' 9 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M5B _pdbx_database_status.recvd_initial_deposition_date 2020-03-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Abe, K.' 1 ? 'Hirose, Y.' 2 ? 'Eki, H.' 3 ? 'Takeda, K.' 4 ? 'Bando, T.' 5 ? 'Endo, M.' 6 ? 'Sugiyama, H.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 142 _citation.language ? _citation.page_first 10544 _citation.page_last 10549 _citation.title 'X-ray Crystal Structure of a Cyclic-PIP-DNA Complex in the Reverse-Binding Orientation.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.0c03972 _citation.pdbx_database_id_PubMed 32401492 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, K.' 1 ? primary 'Hirose, Y.' 2 ? primary 'Eki, H.' 3 ? primary 'Takeda, K.' 4 0000-0002-4094-6816 primary 'Bando, T.' 5 ? primary 'Endo, M.' 6 0000-0003-0957-3764 primary 'Sugiyama, H.' 7 0000-0001-8923-5946 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*CP*(CBR)P*AP*GP*GP*CP*CP*TP*GP*G)-3') ; 3124.888 1 ? ? ? 'SF file contains Friedel pairs.' 2 non-polymer syn ;4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide ; 592.610 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 water nat water 18.015 46 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(CBR)(DA)(DG)(DG)(DC)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGGCCTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide ; S7E 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 1,2-ETHANEDIOL EDO 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 CBR n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 10 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 S7E non-polymer . ;4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide ; ? 'C26 H32 N12 O5' 592.610 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 CBR 2 2 2 CBR CBR A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S7E 1 101 100 S7E S7E A . C 3 MG 1 102 401 MG MG A . D 4 NA 1 103 501 NA NA A . E 5 EDO 1 104 300 EDO EDO A . F 6 HOH 1 201 255 HOH HOH A . F 6 HOH 2 202 235 HOH HOH A . F 6 HOH 3 203 266 HOH HOH A . F 6 HOH 4 204 259 HOH HOH A . F 6 HOH 5 205 212 HOH HOH A . F 6 HOH 6 206 215 HOH HOH A . F 6 HOH 7 207 217 HOH HOH A . F 6 HOH 8 208 211 HOH HOH A . F 6 HOH 9 209 214 HOH HOH A . F 6 HOH 10 210 207 HOH HOH A . F 6 HOH 11 211 249 HOH HOH A . F 6 HOH 12 212 250 HOH HOH A . F 6 HOH 13 213 227 HOH HOH A . F 6 HOH 14 214 248 HOH HOH A . F 6 HOH 15 215 201 HOH HOH A . F 6 HOH 16 216 203 HOH HOH A . F 6 HOH 17 217 206 HOH HOH A . F 6 HOH 18 218 260 HOH HOH A . F 6 HOH 19 219 226 HOH HOH A . F 6 HOH 20 220 208 HOH HOH A . F 6 HOH 21 221 221 HOH HOH A . F 6 HOH 22 222 213 HOH HOH A . F 6 HOH 23 223 218 HOH HOH A . F 6 HOH 24 224 253 HOH HOH A . F 6 HOH 25 225 216 HOH HOH A . F 6 HOH 26 226 254 HOH HOH A . F 6 HOH 27 227 205 HOH HOH A . F 6 HOH 28 228 210 HOH HOH A . F 6 HOH 29 229 219 HOH HOH A . F 6 HOH 30 230 252 HOH HOH A . F 6 HOH 31 231 204 HOH HOH A . F 6 HOH 32 232 265 HOH HOH A . F 6 HOH 33 233 232 HOH HOH A . F 6 HOH 34 234 262 HOH HOH A . F 6 HOH 35 235 257 HOH HOH A . F 6 HOH 36 236 228 HOH HOH A . F 6 HOH 37 237 261 HOH HOH A . F 6 HOH 38 238 246 HOH HOH A . F 6 HOH 39 239 224 HOH HOH A . F 6 HOH 40 240 256 HOH HOH A . F 6 HOH 41 241 241 HOH HOH A . F 6 HOH 42 242 258 HOH HOH A . F 6 HOH 43 243 264 HOH HOH A . F 6 HOH 44 244 251 HOH HOH A . F 6 HOH 45 245 209 HOH HOH A . F 6 HOH 46 246 263 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16_3549 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6M5B _cell.details ? _cell.formula_units_Z ? _cell.length_a 82.235 _cell.length_a_esd ? _cell.length_b 82.235 _cell.length_b_esd ? _cell.length_c 82.235 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M5B _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '12.5% polyethylene glycol monomethyl ether 550, 2.5 mM magnesium chloride hexahydrate, 25 mM HEPES sodium, pH 7.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 16.7 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-10-04 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate 23.982 _reflns.entry_id 6M5B _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 41.118 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14247 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.328 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 26.370 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.742 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.054 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 204128 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.500 1.590 ? 1.730 ? 5487 2347 ? 2153 91.700 ? ? ? ? 0.393 ? ? ? ? ? ? ? ? 2.549 ? ? ? ? 0.480 ? ? 1 1 0.773 ? ? 1.590 1.700 ? 4.520 ? 12503 2193 ? 2193 100.000 ? ? ? ? 0.264 ? ? ? ? ? ? ? ? 5.701 ? ? ? ? 0.291 ? ? 2 1 0.960 ? ? 1.700 1.840 ? 10.180 ? 21938 2018 ? 2018 100.000 ? ? ? ? 0.176 ? ? ? ? ? ? ? ? 10.871 ? ? ? ? 0.185 ? ? 3 1 0.991 ? ? 1.840 2.010 ? 18.220 ? 36126 1895 ? 1895 100.000 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 19.064 ? ? ? ? 0.145 ? ? 4 1 0.997 ? ? 2.010 2.250 ? 28.650 ? 36335 1682 ? 1682 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 21.602 ? ? ? ? 0.103 ? ? 5 1 0.998 ? ? 2.250 2.590 ? 37.570 ? 31396 1494 ? 1494 100.000 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 21.015 ? ? ? ? 0.076 ? ? 6 1 0.999 ? ? 2.590 3.170 ? 58.490 ? 27731 1277 ? 1277 100.000 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 21.716 ? ? ? ? 0.051 ? ? 7 1 1.000 ? ? 3.170 4.460 ? 82.050 ? 20876 980 ? 980 100.000 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 21.302 ? ? ? ? 0.037 ? ? 8 1 1.000 ? ? 4.460 41.118 ? 85.720 ? 11736 556 ? 555 99.800 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 21.146 ? ? ? ? 0.036 ? ? 9 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 43.150 _refine.B_iso_mean 21.7689 _refine.B_iso_min 13.940 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M5B _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5010 _refine.ls_d_res_low 29.0740 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14240 _refine.ls_number_reflns_R_free 1056 _refine.ls_number_reflns_R_work 13184 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.8200 _refine.ls_percent_reflns_R_free 7.4200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1845 _refine.ls_R_factor_R_free 0.1894 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1840 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.940 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.7500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.5010 _refine_hist.d_res_low 29.0740 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 298 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 10 _refine_hist.pdbx_B_iso_mean_ligand 18.40 _refine_hist.pdbx_B_iso_mean_solvent 28.34 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 203 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5010 1.5692 . . 145 1502 91.0000 . . . 0.3102 0.0000 0.2960 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5692 1.6519 . . 100 1683 100.0000 . . . 0.2531 0.0000 0.2431 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6519 1.7554 . . 158 1649 100.0000 . . . 0.1916 0.0000 0.1992 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7554 1.8909 . . 149 1645 100.0000 . . . 0.2208 0.0000 0.1895 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8909 2.0812 . . 114 1691 100.0000 . . . 0.2185 0.0000 0.1907 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0812 2.3822 . . 133 1659 100.0000 . . . 0.2669 0.0000 0.2085 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3822 3.0008 . . 136 1660 100.0000 . . . 0.1915 0.0000 0.1939 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0008 29.0740 . . 121 1695 100.0000 . . . 0.1319 0.0000 0.1513 . . . . . . . . . . . # _struct.entry_id 6M5B _struct.title 'X-ray crystal structure of cyclic-PIP and DNA complex in a reverse binding orientation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M5B _struct_keywords.text 'PIP, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6M5B _struct_ref.pdbx_db_accession 6M5B _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6M5B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6M5B _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3260 ? 1 MORE -25 ? 1 'SSA (A^2)' 3810 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 28_555 x,-y,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 41.1175000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 1 "O3'" ? ? ? 1_555 A CBR 2 P ? ? A DC 1 A CBR 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A CBR 2 "O3'" ? ? ? 1_555 A DA 3 P ? ? A CBR 2 A DA 3 1_555 ? ? ? ? ? ? ? 1.603 ? ? metalc1 metalc ? ? B S7E . O4 ? ? ? 1_555 D NA . NA ? ? A S7E 101 A NA 103 1_555 ? ? ? ? ? ? ? 2.435 ? ? metalc2 metalc ? ? B S7E . O5 ? ? ? 1_555 D NA . NA ? ? A S7E 101 A NA 103 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 208 48_555 ? ? ? ? ? ? ? 2.102 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 210 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 217 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 220 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 228 48_555 ? ? ? ? ? ? ? 2.079 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 245 9_555 ? ? ? ? ? ? ? 2.021 ? ? metalc9 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 103 A HOH 237 30_555 ? ? ? ? ? ? ? 2.654 ? ? metalc10 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 103 A HOH 238 28_555 ? ? ? ? ? ? ? 2.476 ? ? metalc11 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 103 A HOH 241 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc12 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 103 A HOH 242 1_555 ? ? ? ? ? ? ? 2.515 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 1 A DG 10 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CBR 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A CBR 2 A DG 9 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CBR 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A CBR 2 A DG 9 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CBR 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A CBR 2 A DG 9 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 3 A DT 8 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 3 A DT 8 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 5 A DC 6 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 5 A DC 6 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 5 A DC 6 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 6 A DG 5 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 6 A DG 5 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 6 A DG 5 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 8 A DA 3 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 8 A DA 3 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A CBR 2 N3 ? ? A DG 9 A CBR 2 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A CBR 2 O2 ? ? A DG 9 A CBR 2 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A CBR 2 N4 ? ? A DG 9 A CBR 2 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 10 A DC 1 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 28_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O5 ? B S7E . ? A S7E 101 ? 1_555 71.5 ? 2 O4 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 237 ? 30_555 103.4 ? 3 O5 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 237 ? 30_555 174.6 ? 4 O4 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 238 ? 28_555 95.0 ? 5 O5 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 238 ? 28_555 124.8 ? 6 O ? F HOH . ? A HOH 237 ? 30_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 238 ? 28_555 53.1 ? 7 O4 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 241 ? 1_555 162.7 ? 8 O5 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 241 ? 1_555 94.2 ? 9 O ? F HOH . ? A HOH 237 ? 30_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 241 ? 1_555 90.6 ? 10 O ? F HOH . ? A HOH 238 ? 28_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 241 ? 1_555 85.2 ? 11 O4 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 242 ? 1_555 106.0 ? 12 O5 ? B S7E . ? A S7E 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 242 ? 1_555 105.2 ? 13 O ? F HOH . ? A HOH 237 ? 30_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 242 ? 1_555 77.5 ? 14 O ? F HOH . ? A HOH 238 ? 28_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 242 ? 1_555 129.7 ? 15 O ? F HOH . ? A HOH 241 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? F HOH . ? A HOH 242 ? 1_555 86.8 ? 16 O ? F HOH . ? A HOH 208 ? 48_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 210 ? 1_555 91.8 ? 17 O ? F HOH . ? A HOH 208 ? 48_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 217 ? 1_555 88.8 ? 18 O ? F HOH . ? A HOH 210 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 217 ? 1_555 86.8 ? 19 O ? F HOH . ? A HOH 208 ? 48_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 175.6 ? 20 O ? F HOH . ? A HOH 210 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 90.2 ? 21 O ? F HOH . ? A HOH 217 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 87.4 ? 22 O ? F HOH . ? A HOH 208 ? 48_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 228 ? 48_555 93.9 ? 23 O ? F HOH . ? A HOH 210 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 228 ? 48_555 173.8 ? 24 O ? F HOH . ? A HOH 217 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 228 ? 48_555 95.7 ? 25 O ? F HOH . ? A HOH 220 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 228 ? 48_555 84.3 ? 26 O ? F HOH . ? A HOH 208 ? 48_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 245 ? 9_555 90.3 ? 27 O ? F HOH . ? A HOH 210 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 245 ? 9_555 90.9 ? 28 O ? F HOH . ? A HOH 217 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 245 ? 9_555 177.5 ? 29 O ? F HOH . ? A HOH 220 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 245 ? 9_555 93.7 ? 30 O ? F HOH . ? A HOH 228 ? 48_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 245 ? 9_555 86.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A S7E 101 ? 15 'binding site for residue S7E A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A NA 103 ? 5 'binding site for residue NA A 103' AC4 Software A EDO 104 ? 5 'binding site for residue EDO A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 DC A 1 ? DC A 1 . ? 21_455 ? 2 AC1 15 DG A 4 ? DG A 4 . ? 28_555 ? 3 AC1 15 DG A 4 ? DG A 4 . ? 1_555 ? 4 AC1 15 DG A 5 ? DG A 5 . ? 1_555 ? 5 AC1 15 DG A 5 ? DG A 5 . ? 28_555 ? 6 AC1 15 DC A 6 ? DC A 6 . ? 1_555 ? 7 AC1 15 DC A 7 ? DC A 7 . ? 1_555 ? 8 AC1 15 DT A 8 ? DT A 8 . ? 28_555 ? 9 AC1 15 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC1 15 DG A 9 ? DG A 9 . ? 28_555 ? 11 AC1 15 NA D . ? NA A 103 . ? 1_555 ? 12 AC1 15 EDO E . ? EDO A 104 . ? 1_555 ? 13 AC1 15 HOH F . ? HOH A 215 . ? 1_555 ? 14 AC1 15 HOH F . ? HOH A 216 . ? 1_555 ? 15 AC1 15 HOH F . ? HOH A 233 . ? 1_555 ? 16 AC2 6 HOH F . ? HOH A 208 . ? 48_555 ? 17 AC2 6 HOH F . ? HOH A 210 . ? 1_555 ? 18 AC2 6 HOH F . ? HOH A 217 . ? 1_555 ? 19 AC2 6 HOH F . ? HOH A 220 . ? 1_555 ? 20 AC2 6 HOH F . ? HOH A 228 . ? 48_555 ? 21 AC2 6 HOH F . ? HOH A 245 . ? 9_555 ? 22 AC3 5 S7E B . ? S7E A 101 . ? 1_555 ? 23 AC3 5 HOH F . ? HOH A 237 . ? 30_555 ? 24 AC3 5 HOH F . ? HOH A 238 . ? 28_555 ? 25 AC3 5 HOH F . ? HOH A 241 . ? 1_555 ? 26 AC3 5 HOH F . ? HOH A 242 . ? 1_555 ? 27 AC4 5 DG A 10 ? DG A 10 . ? 30_555 ? 28 AC4 5 S7E B . ? S7E A 101 . ? 1_555 ? 29 AC4 5 HOH F . ? HOH A 202 . ? 1_555 ? 30 AC4 5 HOH F . ? HOH A 202 . ? 18_545 ? 31 AC4 5 HOH F . ? HOH A 219 . ? 18_545 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 C22 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 S7E _pdbx_validate_symm_contact.auth_seq_id_1 101 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N22 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 S7E _pdbx_validate_symm_contact.auth_seq_id_2 101 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 28_555 _pdbx_validate_symm_contact.dist 1.33 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 201 ? F HOH . 2 1 A HOH 202 ? F HOH . 3 1 A HOH 223 ? F HOH . 4 1 A HOH 239 ? F HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/4,-z+1/4,y+3/4 3 x+1/4,z+3/4,-y+3/4 4 z+1/4,y+3/4,-x+3/4 5 -z+1/4,y+3/4,x+1/4 6 -y+1/4,x+3/4,z+1/4 7 y+1/4,-x+1/4,z+3/4 8 z,x,y 9 y,z,x 10 -y,-z+1/2,x 11 z,-x,-y+1/2 12 -y+1/2,z,-x 13 -z,-x+1/2,y 14 -z+1/2,x,-y 15 y,-z,-x+1/2 16 x,-y,-z+1/2 17 -x+1/2,y,-z 18 -x,-y+1/2,z 19 y+1/4,x+3/4,-z+3/4 20 -y+1/4,-x+1/4,-z+1/4 21 z+1/4,-y+1/4,x+3/4 22 -z+1/4,-y+1/4,-x+1/4 23 -x+1/4,z+3/4,y+1/4 24 -x+1/4,-z+1/4,-y+1/4 25 x+1/2,y+1/2,z+1/2 26 x+3/4,-z+3/4,y+5/4 27 x+3/4,z+5/4,-y+5/4 28 z+3/4,y+5/4,-x+5/4 29 -z+3/4,y+5/4,x+3/4 30 -y+3/4,x+5/4,z+3/4 31 y+3/4,-x+3/4,z+5/4 32 z+1/2,x+1/2,y+1/2 33 y+1/2,z+1/2,x+1/2 34 -y+1/2,-z+1,x+1/2 35 z+1/2,-x+1/2,-y+1 36 -y+1,z+1/2,-x+1/2 37 -z+1/2,-x+1,y+1/2 38 -z+1,x+1/2,-y+1/2 39 y+1/2,-z+1/2,-x+1 40 x+1/2,-y+1/2,-z+1 41 -x+1,y+1/2,-z+1/2 42 -x+1/2,-y+1,z+1/2 43 y+3/4,x+5/4,-z+5/4 44 -y+3/4,-x+3/4,-z+3/4 45 z+3/4,-y+3/4,x+5/4 46 -z+3/4,-y+3/4,-x+3/4 47 -x+3/4,z+5/4,y+3/4 48 -x+3/4,-z+3/4,-y+3/4 # _pdbx_entry_details.entry_id 6M5B _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 EDO C1 C N N 178 EDO O1 O N N 179 EDO C2 C N N 180 EDO O2 O N N 181 EDO H11 H N N 182 EDO H12 H N N 183 EDO HO1 H N N 184 EDO H21 H N N 185 EDO H22 H N N 186 EDO HO2 H N N 187 HOH O O N N 188 HOH H1 H N N 189 HOH H2 H N N 190 MG MG MG N N 191 NA NA NA N N 192 S7E C18 C Y N 193 S7E C21 C Y N 194 S7E C22 C N N 195 S7E C26 C N N 196 S7E C27 C Y N 197 S7E C29 C Y N 198 S7E C30 C N N 199 S7E C31 C Y N 200 S7E C32 C N N 201 S7E C34 C Y N 202 S7E C35 C Y N 203 S7E C36 C N N 204 S7E C37 C Y N 205 S7E C38 C N N 206 S7E C39 C Y N 207 S7E C40 C Y N 208 S7E C41 C N N 209 S7E C42 C Y N 210 S7E C43 C N N 211 S7E C44 C Y N 212 S7E C45 C Y N 213 S7E C46 C Y N 214 S7E C47 C N N 215 S7E C49 C N S 216 S7E C50 C N N 217 S7E C51 C N N 218 S7E N12 N N N 219 S7E N13 N Y N 220 S7E N14 N N N 221 S7E N15 N Y N 222 S7E N16 N N N 223 S7E N17 N Y N 224 S7E N19 N N N 225 S7E N20 N Y N 226 S7E N22 N N N 227 S7E N23 N N N 228 S7E N28 N Y N 229 S7E N33 N Y N 230 S7E O4 O N N 231 S7E O5 O N N 232 S7E O6 O N N 233 S7E O7 O N N 234 S7E O8 O N N 235 S7E H1 H N N 236 S7E H2 H N N 237 S7E H3 H N N 238 S7E H4 H N N 239 S7E H5 H N N 240 S7E H6 H N N 241 S7E H7 H N N 242 S7E H8 H N N 243 S7E H9 H N N 244 S7E H10 H N N 245 S7E H11 H N N 246 S7E H12 H N N 247 S7E H13 H N N 248 S7E H14 H N N 249 S7E H15 H N N 250 S7E H16 H N N 251 S7E H17 H N N 252 S7E H18 H N N 253 S7E H19 H N N 254 S7E H20 H N N 255 S7E H21 H N N 256 S7E H22 H N N 257 S7E H23 H N N 258 S7E H24 H N N 259 S7E H25 H N N 260 S7E H26 H N N 261 S7E H27 H N N 262 S7E H28 H N N 263 S7E H29 H N N 264 S7E H30 H N N 265 S7E H31 H N N 266 S7E H32 H N N 267 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 EDO C1 O1 sing N N 185 EDO C1 C2 sing N N 186 EDO C1 H11 sing N N 187 EDO C1 H12 sing N N 188 EDO O1 HO1 sing N N 189 EDO C2 O2 sing N N 190 EDO C2 H21 sing N N 191 EDO C2 H22 sing N N 192 EDO O2 HO2 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 S7E C46 N20 sing Y N 196 S7E C46 C45 doub Y N 197 S7E C47 N20 sing N N 198 S7E N22 C45 sing N N 199 S7E N20 C44 sing Y N 200 S7E C45 C21 sing Y N 201 S7E C44 C21 doub Y N 202 S7E C44 C43 sing N N 203 S7E O8 C43 doub N N 204 S7E C43 N19 sing N N 205 S7E N19 C39 sing N N 206 S7E C40 C39 doub Y N 207 S7E C40 N17 sing Y N 208 S7E C39 C18 sing Y N 209 S7E N17 C41 sing N N 210 S7E N17 C42 sing Y N 211 S7E C18 C42 doub Y N 212 S7E C42 C38 sing N N 213 S7E C38 O7 doub N N 214 S7E C38 N16 sing N N 215 S7E N16 C34 sing N N 216 S7E C34 C35 doub Y N 217 S7E C34 N33 sing Y N 218 S7E C35 N15 sing Y N 219 S7E N33 C37 doub Y N 220 S7E N15 C37 sing Y N 221 S7E N15 C36 sing N N 222 S7E C37 C32 sing N N 223 S7E N14 C32 sing N N 224 S7E N14 C27 sing N N 225 S7E C32 O6 doub N N 226 S7E C27 N28 sing Y N 227 S7E C27 C29 doub Y N 228 S7E N28 C31 doub Y N 229 S7E C29 N13 sing Y N 230 S7E C31 N13 sing Y N 231 S7E C31 C26 sing N N 232 S7E N12 C26 sing N N 233 S7E N12 C51 sing N N 234 S7E N13 C30 sing N N 235 S7E C26 O5 doub N N 236 S7E C50 C51 sing N N 237 S7E C50 C49 sing N N 238 S7E C22 C49 sing N N 239 S7E C22 O4 doub N N 240 S7E C49 N23 sing N N 241 S7E C18 H1 sing N N 242 S7E C21 H2 sing N N 243 S7E C22 H3 sing N N 244 S7E C29 H4 sing N N 245 S7E C30 H5 sing N N 246 S7E C30 H6 sing N N 247 S7E C30 H7 sing N N 248 S7E C35 H8 sing N N 249 S7E C36 H9 sing N N 250 S7E C36 H10 sing N N 251 S7E C36 H11 sing N N 252 S7E C40 H12 sing N N 253 S7E C41 H13 sing N N 254 S7E C41 H14 sing N N 255 S7E C41 H15 sing N N 256 S7E C46 H16 sing N N 257 S7E C47 H17 sing N N 258 S7E C47 H18 sing N N 259 S7E C47 H19 sing N N 260 S7E C49 H20 sing N N 261 S7E C50 H21 sing N N 262 S7E C50 H22 sing N N 263 S7E C51 H23 sing N N 264 S7E C51 H24 sing N N 265 S7E N12 H25 sing N N 266 S7E N14 H26 sing N N 267 S7E N16 H27 sing N N 268 S7E N19 H28 sing N N 269 S7E N22 H29 sing N N 270 S7E N22 H30 sing N N 271 S7E N23 H31 sing N N 272 S7E N23 H32 sing N N 273 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6M5B 'b-form double helix' 6M5B 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 10 28_555 0.084 -0.164 0.271 -10.034 -12.194 0.237 1 A_DC1:DG10_A A 1 ? A 10 ? 19 1 1 A CBR 2 1_555 A DG 9 28_555 0.073 -0.130 -0.040 -9.941 -11.971 2.519 2 A_CBR2:DG9_A A 2 ? A 9 ? 19 1 1 A DA 3 1_555 A DT 8 28_555 0.162 -0.165 -0.022 4.685 -11.501 2.066 3 A_DA3:DT8_A A 3 ? A 8 ? 20 1 1 A DG 4 1_555 A DC 7 28_555 -0.046 -0.148 0.127 1.978 -6.039 -3.638 4 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DG 5 1_555 A DC 6 28_555 -0.071 -0.126 0.068 1.141 -10.586 -4.745 5 A_DG5:DC6_A A 5 ? A 6 ? 19 1 1 A DC 6 1_555 A DG 5 28_555 0.071 -0.126 0.068 -1.141 -10.586 -4.745 6 A_DC6:DG5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 28_555 0.046 -0.148 0.127 -1.978 -6.039 -3.638 7 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DT 8 1_555 A DA 3 28_555 -0.162 -0.165 -0.022 -4.685 -11.501 2.066 8 A_DT8:DA3_A A 8 ? A 3 ? 20 1 1 A DG 9 1_555 A CBR 2 28_555 -0.073 -0.130 -0.040 9.941 -11.971 2.519 9 A_DG9:CBR2_A A 9 ? A 2 ? 19 1 1 A DG 10 1_555 A DC 1 28_555 -0.084 -0.164 0.271 10.034 -12.194 0.237 10 A_DG10:DC1_A A 10 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 10 28_555 A CBR 2 1_555 A DG 9 28_555 -0.198 -0.193 3.262 3.746 3.379 33.582 -0.868 0.934 3.188 5.808 -6.438 33.948 1 AA_DC1CBR2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A CBR 2 1_555 A DG 9 28_555 A DA 3 1_555 A DT 8 28_555 0.477 1.148 3.026 -0.958 8.974 34.273 0.610 -0.921 3.202 14.910 1.592 35.407 2 AA_CBR2DA3:DT8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DA 3 1_555 A DT 8 28_555 A DG 4 1_555 A DC 7 28_555 -1.331 0.268 3.267 -5.647 10.961 32.362 -1.324 1.326 3.358 18.834 9.703 34.573 3 AA_DA3DG4:DC7DT8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 28_555 A DG 5 1_555 A DC 6 28_555 -0.950 0.242 3.248 -3.612 6.066 34.926 -0.498 1.021 3.321 9.982 5.944 35.610 4 AA_DG4DG5:DC6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DG 5 1_555 A DC 6 28_555 A DC 6 1_555 A DG 5 28_555 0.000 0.093 3.258 0.000 -0.649 38.056 0.225 0.000 3.256 -0.995 0.000 38.061 5 AA_DG5DC6:DG5DC6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DC 6 1_555 A DG 5 28_555 A DC 7 1_555 A DG 4 28_555 0.950 0.242 3.248 3.612 6.066 34.926 -0.498 -1.021 3.321 9.982 -5.944 35.610 6 AA_DC6DC7:DG4DG5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 28_555 A DT 8 1_555 A DA 3 28_555 1.331 0.268 3.267 5.647 10.961 32.362 -1.324 -1.326 3.358 18.834 -9.703 34.573 7 AA_DC7DT8:DA3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DT 8 1_555 A DA 3 28_555 A DG 9 1_555 A CBR 2 28_555 -0.477 1.148 3.026 0.958 8.974 34.273 0.610 0.921 3.202 14.910 -1.592 35.407 8 AA_DT8DG9:CBR2DA3_AA A 8 ? A 3 ? A 9 ? A 2 ? 1 A DG 9 1_555 A CBR 2 28_555 A DG 10 1_555 A DC 1 28_555 0.198 -0.193 3.262 -3.746 3.379 33.582 -0.868 -0.934 3.188 5.808 6.438 33.948 9 AA_DG9DG10:DC1CBR2_AA A 9 ? A 2 ? A 10 ? A 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan 18KK0139 1 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan 16H06356 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id S7E _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id S7E _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _space_group.name_H-M_alt 'I 41 3 2' _space_group.name_Hall 'I 4bd 2c 3' _space_group.IT_number 214 _space_group.crystal_system cubic _space_group.id 1 # _atom_sites.entry_id 6M5B _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012160 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012160 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012160 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -7.579 -15.399 24.701 1.00 22.02 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -8.654 -16.033 25.376 1.00 21.91 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? -9.411 -15.047 26.252 1.00 20.59 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? -8.594 -14.641 27.375 1.00 19.30 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? -9.858 -13.764 25.560 1.00 21.42 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? -11.121 -13.379 26.058 1.00 22.95 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? -8.781 -12.763 25.948 1.00 22.96 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? -8.388 -13.235 27.346 1.00 21.23 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -6.955 -12.985 27.666 1.00 17.11 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -6.612 -12.075 28.671 1.00 17.26 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -7.510 -11.477 29.282 1.00 19.24 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -5.301 -11.869 28.949 1.00 16.75 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -4.363 -12.531 28.260 1.00 17.29 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -3.085 -12.308 28.579 1.00 15.38 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -4.694 -13.463 27.227 1.00 16.91 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -5.988 -13.652 26.960 1.00 16.56 ? 1 DC A C6 1 HETATM 17 BR BR . CBR A 1 2 ? -6.006 -10.906 24.367 1.00 21.62 ? 2 CBR A BR 1 HETATM 18 P P . CBR A 1 2 ? -11.986 -12.254 25.303 1.00 27.79 ? 2 CBR A P 1 HETATM 19 O OP1 . CBR A 1 2 ? -13.456 -12.511 25.626 1.00 28.26 ? 2 CBR A OP1 1 HETATM 20 O OP2 . CBR A 1 2 ? -11.632 -12.242 23.842 1.00 24.84 ? 2 CBR A OP2 1 HETATM 21 O "O5'" . CBR A 1 2 ? -11.485 -10.803 26.001 1.00 24.24 ? 2 CBR A "O5'" 1 HETATM 22 N N1 . CBR A 1 2 ? -8.011 -8.491 27.231 1.00 20.78 ? 2 CBR A N1 1 HETATM 23 C C6 . CBR A 1 2 ? -7.756 -9.383 26.122 1.00 20.54 ? 2 CBR A C6 1 HETATM 24 C C2 . CBR A 1 2 ? -6.913 -8.012 28.097 1.00 20.67 ? 2 CBR A C2 1 HETATM 25 O O2 . CBR A 1 2 ? -7.129 -7.281 29.007 1.00 23.53 ? 2 CBR A O2 1 HETATM 26 N N3 . CBR A 1 2 ? -5.517 -8.425 27.807 1.00 19.97 ? 2 CBR A N3 1 HETATM 27 C C4 . CBR A 1 2 ? -5.253 -9.289 26.705 1.00 18.03 ? 2 CBR A C4 1 HETATM 28 N N4 . CBR A 1 2 ? -3.888 -9.687 26.442 1.00 18.55 ? 2 CBR A N4 1 HETATM 29 C C5 . CBR A 1 2 ? -6.364 -9.766 25.866 1.00 19.41 ? 2 CBR A C5 1 HETATM 30 C "C2'" . CBR A 1 2 ? -10.298 -7.752 26.311 1.00 26.60 ? 2 CBR A "C2'" 1 HETATM 31 C "C5'" . CBR A 1 2 ? -11.845 -10.556 27.358 1.00 27.08 ? 2 CBR A "C5'" 1 HETATM 32 C "C4'" . CBR A 1 2 ? -11.322 -9.307 27.730 1.00 26.78 ? 2 CBR A "C4'" 1 HETATM 33 O "O4'" . CBR A 1 2 ? -9.773 -9.365 27.906 1.00 24.64 ? 2 CBR A "O4'" 1 HETATM 34 C "C1'" . CBR A 1 2 ? -9.345 -8.160 27.552 1.00 24.47 ? 2 CBR A "C1'" 1 HETATM 35 C "C3'" . CBR A 1 2 ? -11.519 -8.216 26.657 1.00 31.01 ? 2 CBR A "C3'" 1 HETATM 36 O "O3'" . CBR A 1 2 ? -12.285 -7.170 27.362 1.00 33.95 ? 2 CBR A "O3'" 1 ATOM 37 P P . DA A 1 3 ? -12.948 -5.960 26.545 1.00 39.72 ? 3 DA A P 1 ATOM 38 O OP1 . DA A 1 3 ? -14.235 -5.658 27.213 1.00 43.15 ? 3 DA A OP1 1 ATOM 39 O OP2 . DA A 1 3 ? -12.883 -6.232 25.095 1.00 35.87 ? 3 DA A OP2 1 ATOM 40 O "O5'" . DA A 1 3 ? -11.939 -4.753 26.789 1.00 31.82 ? 3 DA A "O5'" 1 ATOM 41 C "C5'" . DA A 1 3 ? -11.631 -4.356 28.096 1.00 29.89 ? 3 DA A "C5'" 1 ATOM 42 C "C4'" . DA A 1 3 ? -10.496 -3.362 28.079 1.00 33.31 ? 3 DA A "C4'" 1 ATOM 43 O "O4'" . DA A 1 3 ? -9.257 -4.048 27.777 1.00 30.67 ? 3 DA A "O4'" 1 ATOM 44 C "C3'" . DA A 1 3 ? -10.620 -2.254 27.032 1.00 34.81 ? 3 DA A "C3'" 1 ATOM 45 O "O3'" . DA A 1 3 ? -10.085 -1.077 27.576 1.00 38.28 ? 3 DA A "O3'" 1 ATOM 46 C "C2'" . DA A 1 3 ? -9.749 -2.773 25.890 1.00 31.59 ? 3 DA A "C2'" 1 ATOM 47 C "C1'" . DA A 1 3 ? -8.627 -3.404 26.690 1.00 29.06 ? 3 DA A "C1'" 1 ATOM 48 N N9 . DA A 1 3 ? -7.851 -4.394 25.963 1.00 26.34 ? 3 DA A N9 1 ATOM 49 C C8 . DA A 1 3 ? -8.264 -5.174 24.921 1.00 28.07 ? 3 DA A C8 1 ATOM 50 N N7 . DA A 1 3 ? -7.336 -5.989 24.471 1.00 25.03 ? 3 DA A N7 1 ATOM 51 C C5 . DA A 1 3 ? -6.246 -5.726 25.290 1.00 23.55 ? 3 DA A C5 1 ATOM 52 C C6 . DA A 1 3 ? -4.944 -6.258 25.332 1.00 19.68 ? 3 DA A C6 1 ATOM 53 N N6 . DA A 1 3 ? -4.520 -7.220 24.499 1.00 21.70 ? 3 DA A N6 1 ATOM 54 N N1 . DA A 1 3 ? -4.099 -5.775 26.271 1.00 19.24 ? 3 DA A N1 1 ATOM 55 C C2 . DA A 1 3 ? -4.532 -4.825 27.110 1.00 21.29 ? 3 DA A C2 1 ATOM 56 N N3 . DA A 1 3 ? -5.736 -4.245 27.162 1.00 22.37 ? 3 DA A N3 1 ATOM 57 C C4 . DA A 1 3 ? -6.548 -4.747 26.213 1.00 24.08 ? 3 DA A C4 1 ATOM 58 P P . DG A 1 4 ? -10.630 0.366 27.140 1.00 34.00 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? -11.634 0.775 28.141 1.00 38.88 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? -10.934 0.363 25.695 1.00 35.34 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? -9.352 1.286 27.362 1.00 27.51 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? -8.675 1.259 28.595 1.00 25.78 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? -7.273 1.799 28.420 1.00 26.69 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? -6.407 0.756 27.896 1.00 24.81 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? -7.159 2.957 27.440 1.00 28.29 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? -6.164 3.824 27.895 1.00 32.78 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? -6.752 2.269 26.134 1.00 25.93 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? -5.857 1.154 26.654 1.00 24.54 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? -5.807 -0.024 25.801 1.00 23.97 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? -6.857 -0.642 25.171 1.00 22.15 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? -6.513 -1.701 24.495 1.00 24.02 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? -5.142 -1.799 24.698 1.00 20.74 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? -4.226 -2.757 24.217 1.00 17.99 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? -4.457 -3.739 23.497 1.00 20.21 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? -2.926 -2.492 24.659 1.00 17.22 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? -2.567 -1.436 25.465 1.00 16.92 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? -1.265 -1.332 25.776 1.00 17.69 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? -3.431 -0.527 25.929 1.00 18.83 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? -4.693 -0.780 25.506 1.00 20.11 ? 4 DG A C4 1 ATOM 80 P P . DG A 1 5 ? -6.042 5.315 27.314 1.00 29.53 ? 5 DG A P 1 ATOM 81 O OP1 . DG A 1 5 ? -6.270 6.192 28.476 1.00 30.88 ? 5 DG A OP1 1 ATOM 82 O OP2 . DG A 1 5 ? -6.742 5.451 26.020 1.00 27.14 ? 5 DG A OP2 1 ATOM 83 O "O5'" . DG A 1 5 ? -4.494 5.414 26.946 1.00 23.31 ? 5 DG A "O5'" 1 ATOM 84 C "C5'" . DG A 1 5 ? -3.535 5.204 27.927 1.00 19.20 ? 5 DG A "C5'" 1 ATOM 85 C "C4'" . DG A 1 5 ? -2.174 5.049 27.281 1.00 19.23 ? 5 DG A "C4'" 1 ATOM 86 O "O4'" . DG A 1 5 ? -2.117 3.791 26.558 1.00 17.96 ? 5 DG A "O4'" 1 ATOM 87 C "C3'" . DG A 1 5 ? -1.809 6.140 26.281 1.00 18.67 ? 5 DG A "C3'" 1 ATOM 88 O "O3'" . DG A 1 5 ? -0.469 6.508 26.516 1.00 18.75 ? 5 DG A "O3'" 1 ATOM 89 C "C2'" . DG A 1 5 ? -2.015 5.467 24.909 1.00 18.86 ? 5 DG A "C2'" 1 ATOM 90 C "C1'" . DG A 1 5 ? -1.719 3.997 25.213 1.00 18.18 ? 5 DG A "C1'" 1 ATOM 91 N N9 . DG A 1 5 ? -2.480 3.036 24.418 1.00 16.46 ? 5 DG A N9 1 ATOM 92 C C8 . DG A 1 5 ? -3.847 2.993 24.276 1.00 17.76 ? 5 DG A C8 1 ATOM 93 N N7 . DG A 1 5 ? -4.267 1.989 23.552 1.00 18.61 ? 5 DG A N7 1 ATOM 94 C C5 . DG A 1 5 ? -3.109 1.297 23.219 1.00 16.50 ? 5 DG A C5 1 ATOM 95 C C6 . DG A 1 5 ? -2.946 0.119 22.457 1.00 17.12 ? 5 DG A C6 1 ATOM 96 O O6 . DG A 1 5 ? -3.829 -0.570 21.920 1.00 17.20 ? 5 DG A O6 1 ATOM 97 N N1 . DG A 1 5 ? -1.597 -0.249 22.349 1.00 15.47 ? 5 DG A N1 1 ATOM 98 C C2 . DG A 1 5 ? -0.546 0.448 22.915 1.00 14.59 ? 5 DG A C2 1 ATOM 99 N N2 . DG A 1 5 ? 0.693 -0.048 22.711 1.00 14.60 ? 5 DG A N2 1 ATOM 100 N N3 . DG A 1 5 ? -0.696 1.555 23.638 1.00 14.97 ? 5 DG A N3 1 ATOM 101 C C4 . DG A 1 5 ? -1.997 1.916 23.754 1.00 15.85 ? 5 DG A C4 1 ATOM 102 P P . DC A 1 6 ? 0.229 7.725 25.737 1.00 20.75 ? 6 DC A P 1 ATOM 103 O OP1 . DC A 1 6 ? 1.135 8.349 26.723 1.00 22.63 ? 6 DC A OP1 1 ATOM 104 O OP2 . DC A 1 6 ? -0.790 8.514 25.023 1.00 22.36 ? 6 DC A OP2 1 ATOM 105 O "O5'" . DC A 1 6 ? 1.121 7.008 24.632 1.00 17.77 ? 6 DC A "O5'" 1 ATOM 106 C "C5'" . DC A 1 6 ? 2.174 6.171 25.024 1.00 17.14 ? 6 DC A "C5'" 1 ATOM 107 C "C4'" . DC A 1 6 ? 2.690 5.409 23.830 1.00 15.92 ? 6 DC A "C4'" 1 ATOM 108 O "O4'" . DC A 1 6 ? 1.644 4.582 23.292 1.00 16.06 ? 6 DC A "O4'" 1 ATOM 109 C "C3'" . DC A 1 6 ? 3.195 6.281 22.679 1.00 15.45 ? 6 DC A "C3'" 1 ATOM 110 O "O3'" . DC A 1 6 ? 4.568 5.962 22.474 1.00 14.93 ? 6 DC A "O3'" 1 ATOM 111 C "C2'" . DC A 1 6 ? 2.293 5.902 21.476 1.00 15.85 ? 6 DC A "C2'" 1 ATOM 112 C "C1'" . DC A 1 6 ? 1.761 4.525 21.888 1.00 15.19 ? 6 DC A "C1'" 1 ATOM 113 N N1 . DC A 1 6 ? 0.405 4.181 21.406 1.00 15.30 ? 6 DC A N1 1 ATOM 114 C C2 . DC A 1 6 ? 0.189 2.988 20.689 1.00 15.74 ? 6 DC A C2 1 ATOM 115 O O2 . DC A 1 6 ? 1.154 2.280 20.372 1.00 15.49 ? 6 DC A O2 1 ATOM 116 N N3 . DC A 1 6 ? -1.076 2.658 20.343 1.00 14.49 ? 6 DC A N3 1 ATOM 117 C C4 . DC A 1 6 ? -2.099 3.450 20.688 1.00 17.30 ? 6 DC A C4 1 ATOM 118 N N4 . DC A 1 6 ? -3.331 3.083 20.316 1.00 17.90 ? 6 DC A N4 1 ATOM 119 C C5 . DC A 1 6 ? -1.903 4.643 21.446 1.00 16.92 ? 6 DC A C5 1 ATOM 120 C C6 . DC A 1 6 ? -0.651 4.961 21.786 1.00 15.68 ? 6 DC A C6 1 ATOM 121 P P . DC A 1 7 ? 5.509 6.792 21.481 1.00 16.20 ? 7 DC A P 1 ATOM 122 O OP1 . DC A 1 7 ? 6.893 6.413 21.821 1.00 15.84 ? 7 DC A OP1 1 ATOM 123 O OP2 . DC A 1 7 ? 5.093 8.219 21.497 1.00 16.60 ? 7 DC A OP2 1 ATOM 124 O "O5'" . DC A 1 7 ? 5.139 6.263 20.037 1.00 15.52 ? 7 DC A "O5'" 1 ATOM 125 C "C5'" . DC A 1 7 ? 5.488 4.935 19.676 1.00 14.89 ? 7 DC A "C5'" 1 ATOM 126 C "C4'" . DC A 1 7 ? 4.834 4.594 18.371 1.00 15.78 ? 7 DC A "C4'" 1 ATOM 127 O "O4'" . DC A 1 7 ? 3.416 4.522 18.539 1.00 15.44 ? 7 DC A "O4'" 1 ATOM 128 C "C3'" . DC A 1 7 ? 5.061 5.614 17.258 1.00 16.50 ? 7 DC A "C3'" 1 ATOM 129 O "O3'" . DC A 1 7 ? 5.949 5.030 16.342 1.00 17.51 ? 7 DC A "O3'" 1 ATOM 130 C "C2'" . DC A 1 7 ? 3.648 5.849 16.660 1.00 16.27 ? 7 DC A "C2'" 1 ATOM 131 C "C1'" . DC A 1 7 ? 2.840 4.705 17.278 1.00 15.51 ? 7 DC A "C1'" 1 ATOM 132 N N1 . DC A 1 7 ? 1.411 4.990 17.499 1.00 15.27 ? 7 DC A N1 1 ATOM 133 C C2 . DC A 1 7 ? 0.436 4.076 17.059 1.00 15.34 ? 7 DC A C2 1 ATOM 134 O O2 . DC A 1 7 ? 0.785 3.063 16.437 1.00 15.73 ? 7 DC A O2 1 ATOM 135 N N3 . DC A 1 7 ? -0.863 4.339 17.314 1.00 15.05 ? 7 DC A N3 1 ATOM 136 C C4 . DC A 1 7 ? -1.208 5.431 17.995 1.00 15.39 ? 7 DC A C4 1 ATOM 137 N N4 . DC A 1 7 ? -2.509 5.639 18.223 1.00 18.33 ? 7 DC A N4 1 ATOM 138 C C5 . DC A 1 7 ? -0.232 6.357 18.484 1.00 16.02 ? 7 DC A C5 1 ATOM 139 C C6 . DC A 1 7 ? 1.052 6.092 18.221 1.00 15.79 ? 7 DC A C6 1 ATOM 140 P P . DT A 1 8 ? 6.477 5.823 15.055 1.00 18.45 ? 8 DT A P 1 ATOM 141 O OP1 . DT A 1 8 ? 7.750 5.176 14.668 1.00 20.18 ? 8 DT A OP1 1 ATOM 142 O OP2 . DT A 1 8 ? 6.434 7.276 15.349 1.00 19.81 ? 8 DT A OP2 1 ATOM 143 O "O5'" . DT A 1 8 ? 5.379 5.525 13.953 1.00 18.89 ? 8 DT A "O5'" 1 ATOM 144 C "C5'" . DT A 1 8 ? 5.019 4.199 13.666 1.00 17.50 ? 8 DT A "C5'" 1 ATOM 145 C "C4'" . DT A 1 8 ? 3.727 4.179 12.894 1.00 17.62 ? 8 DT A "C4'" 1 ATOM 146 O "O4'" . DT A 1 8 ? 2.665 4.637 13.721 1.00 16.05 ? 8 DT A "O4'" 1 ATOM 147 C "C3'" . DT A 1 8 ? 3.698 5.075 11.662 1.00 18.96 ? 8 DT A "C3'" 1 ATOM 148 O "O3'" . DT A 1 8 ? 3.869 4.239 10.536 1.00 18.96 ? 8 DT A "O3'" 1 ATOM 149 C "C2'" . DT A 1 8 ? 2.298 5.749 11.705 1.00 19.19 ? 8 DT A "C2'" 1 ATOM 150 C "C1'" . DT A 1 8 ? 1.615 5.047 12.879 1.00 17.92 ? 8 DT A "C1'" 1 ATOM 151 N N1 . DT A 1 8 ? 0.680 5.899 13.695 1.00 15.62 ? 8 DT A N1 1 ATOM 152 C C2 . DT A 1 8 ? -0.650 5.528 13.816 1.00 17.29 ? 8 DT A C2 1 ATOM 153 O O2 . DT A 1 8 ? -1.135 4.552 13.259 1.00 18.34 ? 8 DT A O2 1 ATOM 154 N N3 . DT A 1 8 ? -1.402 6.340 14.624 1.00 16.77 ? 8 DT A N3 1 ATOM 155 C C4 . DT A 1 8 ? -0.977 7.468 15.303 1.00 15.81 ? 8 DT A C4 1 ATOM 156 O O4 . DT A 1 8 ? -1.741 8.126 16.002 1.00 17.88 ? 8 DT A O4 1 ATOM 157 C C5 . DT A 1 8 ? 0.423 7.794 15.148 1.00 16.57 ? 8 DT A C5 1 ATOM 158 C C7 . DT A 1 8 ? 1.003 8.997 15.842 1.00 19.19 ? 8 DT A C7 1 ATOM 159 C C6 . DT A 1 8 ? 1.178 7.003 14.368 1.00 17.81 ? 8 DT A C6 1 ATOM 160 P P . DG A 1 9 ? 3.827 4.802 9.030 1.00 24.34 ? 9 DG A P 1 ATOM 161 O OP1 . DG A 1 9 ? 4.677 3.856 8.296 1.00 21.10 ? 9 DG A OP1 1 ATOM 162 O OP2 . DG A 1 9 ? 4.058 6.271 9.015 1.00 25.35 ? 9 DG A OP2 1 ATOM 163 O "O5'" . DG A 1 9 ? 2.289 4.642 8.629 1.00 21.62 ? 9 DG A "O5'" 1 ATOM 164 C "C5'" . DG A 1 9 ? 1.739 3.355 8.472 1.00 20.77 ? 9 DG A "C5'" 1 ATOM 165 C "C4'" . DG A 1 9 ? 0.415 3.425 7.733 1.00 21.62 ? 9 DG A "C4'" 1 ATOM 166 O "O4'" . DG A 1 9 ? -0.572 4.128 8.525 1.00 20.64 ? 9 DG A "O4'" 1 ATOM 167 C "C3'" . DG A 1 9 ? 0.437 4.132 6.393 1.00 23.19 ? 9 DG A "C3'" 1 ATOM 168 O "O3'" . DG A 1 9 ? -0.567 3.527 5.592 1.00 22.78 ? 9 DG A "O3'" 1 ATOM 169 C "C2'" . DG A 1 9 ? 0.103 5.587 6.780 1.00 22.86 ? 9 DG A "C2'" 1 ATOM 170 C "C1'" . DG A 1 9 ? -0.876 5.383 7.928 1.00 19.68 ? 9 DG A "C1'" 1 ATOM 171 N N9 . DG A 1 9 ? -0.840 6.388 8.993 1.00 18.65 ? 9 DG A N9 1 ATOM 172 C C8 . DG A 1 9 ? 0.193 7.229 9.351 1.00 19.95 ? 9 DG A C8 1 ATOM 173 N N7 . DG A 1 9 ? -0.097 7.987 10.390 1.00 18.14 ? 9 DG A N7 1 ATOM 174 C C5 . DG A 1 9 ? -1.394 7.608 10.733 1.00 17.32 ? 9 DG A C5 1 ATOM 175 C C6 . DG A 1 9 ? -2.259 8.067 11.765 1.00 17.50 ? 9 DG A C6 1 ATOM 176 O O6 . DG A 1 9 ? -2.049 8.947 12.622 1.00 18.17 ? 9 DG A O6 1 ATOM 177 N N1 . DG A 1 9 ? -3.487 7.412 11.738 1.00 17.72 ? 9 DG A N1 1 ATOM 178 C C2 . DG A 1 9 ? -3.835 6.429 10.842 1.00 18.64 ? 9 DG A C2 1 ATOM 179 N N2 . DG A 1 9 ? -5.059 5.901 10.977 1.00 21.22 ? 9 DG A N2 1 ATOM 180 N N3 . DG A 1 9 ? -3.041 5.992 9.884 1.00 18.04 ? 9 DG A N3 1 ATOM 181 C C4 . DG A 1 9 ? -1.848 6.618 9.885 1.00 16.96 ? 9 DG A C4 1 ATOM 182 P P . DG A 1 10 ? -0.924 4.047 4.118 1.00 25.31 ? 10 DG A P 1 ATOM 183 O OP1 . DG A 1 10 ? -1.163 2.821 3.329 1.00 29.25 ? 10 DG A OP1 1 ATOM 184 O OP2 . DG A 1 10 ? 0.040 5.074 3.646 1.00 27.43 ? 10 DG A OP2 1 ATOM 185 O "O5'" . DG A 1 10 ? -2.326 4.756 4.329 1.00 27.02 ? 10 DG A "O5'" 1 ATOM 186 C "C5'" . DG A 1 10 ? -3.385 4.040 4.934 1.00 25.26 ? 10 DG A "C5'" 1 ATOM 187 C "C4'" . DG A 1 10 ? -4.560 4.959 5.142 1.00 24.94 ? 10 DG A "C4'" 1 ATOM 188 O "O4'" . DG A 1 10 ? -4.301 5.804 6.295 1.00 23.55 ? 10 DG A "O4'" 1 ATOM 189 C "C3'" . DG A 1 10 ? -4.826 5.904 3.963 1.00 26.33 ? 10 DG A "C3'" 1 ATOM 190 O "O3'" . DG A 1 10 ? -6.210 5.914 3.649 1.00 30.84 ? 10 DG A "O3'" 1 ATOM 191 C "C2'" . DG A 1 10 ? -4.352 7.267 4.472 1.00 23.75 ? 10 DG A "C2'" 1 ATOM 192 C "C1'" . DG A 1 10 ? -4.611 7.136 5.959 1.00 21.72 ? 10 DG A "C1'" 1 ATOM 193 N N9 . DG A 1 10 ? -3.809 8.041 6.782 1.00 19.06 ? 10 DG A N9 1 ATOM 194 C C8 . DG A 1 10 ? -2.498 8.401 6.607 1.00 18.41 ? 10 DG A C8 1 ATOM 195 N N7 . DG A 1 10 ? -2.072 9.255 7.513 1.00 17.94 ? 10 DG A N7 1 ATOM 196 C C5 . DG A 1 10 ? -3.175 9.454 8.332 1.00 15.54 ? 10 DG A C5 1 ATOM 197 C C6 . DG A 1 10 ? -3.343 10.277 9.475 1.00 16.89 ? 10 DG A C6 1 ATOM 198 O O6 . DG A 1 10 ? -2.508 11.005 10.031 1.00 17.68 ? 10 DG A O6 1 ATOM 199 N N1 . DG A 1 10 ? -4.638 10.193 9.987 1.00 17.01 ? 10 DG A N1 1 ATOM 200 C C2 . DG A 1 10 ? -5.643 9.411 9.459 1.00 18.64 ? 10 DG A C2 1 ATOM 201 N N2 . DG A 1 10 ? -6.830 9.455 10.085 1.00 19.67 ? 10 DG A N2 1 ATOM 202 N N3 . DG A 1 10 ? -5.495 8.640 8.393 1.00 19.83 ? 10 DG A N3 1 ATOM 203 C C4 . DG A 1 10 ? -4.251 8.716 7.883 1.00 18.50 ? 10 DG A C4 1 HETATM 204 C C18 . S7E B 2 . ? 3.724 1.496 18.173 1.00 14.05 ? 101 S7E A C18 1 HETATM 205 C C21 . S7E B 2 . ? 1.384 1.645 13.429 1.00 17.33 ? 101 S7E A C21 1 HETATM 206 C C22 . S7E B 2 . ? -1.171 -1.837 30.369 1.00 19.64 ? 101 S7E A C22 1 HETATM 207 C C26 . S7E B 2 . ? -1.984 1.155 29.364 1.00 22.96 ? 101 S7E A C26 1 HETATM 208 C C27 . S7E B 2 . ? 0.540 2.103 27.040 1.00 17.42 ? 101 S7E A C27 1 HETATM 209 C C29 . S7E B 2 . ? 0.751 3.050 28.036 1.00 18.23 ? 101 S7E A C29 1 HETATM 210 C C30 . S7E B 2 . ? -0.293 3.559 30.202 1.00 20.09 ? 101 S7E A C30 1 HETATM 211 C C31 . S7E B 2 . ? -0.865 1.778 28.570 1.00 18.34 ? 101 S7E A C31 1 HETATM 212 C C32 . S7E B 2 . ? 2.683 2.378 25.848 1.00 15.61 ? 101 S7E A C32 1 HETATM 213 C C34 . S7E B 2 . ? 4.007 1.928 22.571 1.00 14.68 ? 101 S7E A C34 1 HETATM 214 C C35 . S7E B 2 . ? 5.160 2.279 23.263 1.00 15.06 ? 101 S7E A C35 1 HETATM 215 C C36 . S7E B 2 . ? 5.717 2.836 25.586 1.00 16.77 ? 101 S7E A C36 1 HETATM 216 C C37 . S7E B 2 . ? 3.506 2.236 24.587 1.00 15.25 ? 101 S7E A C37 1 HETATM 217 C C38 . S7E B 2 . ? 5.081 1.580 20.353 1.00 14.83 ? 101 S7E A C38 1 HETATM 218 C C39 . S7E B 2 . ? 4.058 1.229 16.860 1.00 13.94 ? 101 S7E A C39 1 HETATM 219 C C40 . S7E B 2 . ? 5.421 0.963 16.799 1.00 15.05 ? 101 S7E A C40 1 HETATM 220 C C41 . S7E B 2 . ? 7.277 0.839 18.388 1.00 17.81 ? 101 S7E A C41 1 HETATM 221 C C42 . S7E B 2 . ? 4.917 1.354 18.870 1.00 14.34 ? 101 S7E A C42 1 HETATM 222 C C43 . S7E B 2 . ? 3.510 0.698 14.478 1.00 15.50 ? 101 S7E A C43 1 HETATM 223 C C44 . S7E B 2 . ? 2.498 0.815 13.365 1.00 15.82 ? 101 S7E A C44 1 HETATM 224 C C45 . S7E B 2 . ? 0.731 1.480 12.221 1.00 17.81 ? 101 S7E A C45 1 HETATM 225 C C46 . S7E B 2 . ? 1.473 0.565 11.483 1.00 17.56 ? 101 S7E A C46 1 HETATM 226 C C47 . S7E B 2 . ? 3.533 -0.755 11.765 1.00 17.84 ? 101 S7E A C47 1 HETATM 227 C C49 . S7E B 2 . ? -2.485 -2.604 30.440 1.00 20.78 ? 101 S7E A C49 1 HETATM 228 C C50 . S7E B 2 . ? -3.566 -2.056 29.507 1.00 21.69 ? 101 S7E A C50 1 HETATM 229 C C51 . S7E B 2 . ? -3.765 -0.542 29.559 1.00 21.68 ? 101 S7E A C51 1 HETATM 230 N N12 . S7E B 2 . ? -2.723 0.076 28.760 1.00 20.08 ? 101 S7E A N12 1 HETATM 231 N N13 . S7E B 2 . ? -0.141 2.801 28.969 1.00 20.00 ? 101 S7E A N13 1 HETATM 232 N N14 . S7E B 2 . ? 1.294 1.959 25.823 1.00 14.59 ? 101 S7E A N14 1 HETATM 233 N N15 . S7E B 2 . ? 4.805 2.462 24.515 1.00 15.90 ? 101 S7E A N15 1 HETATM 234 N N16 . S7E B 2 . ? 3.896 1.661 21.155 1.00 14.08 ? 101 S7E A N16 1 HETATM 235 N N17 . S7E B 2 . ? 5.887 1.060 18.030 1.00 15.20 ? 101 S7E A N17 1 HETATM 236 N N19 . S7E B 2 . ? 3.142 1.264 15.758 1.00 14.99 ? 101 S7E A N19 1 HETATM 237 N N20 . S7E B 2 . ? 2.527 0.196 12.198 1.00 17.28 ? 101 S7E A N20 1 HETATM 238 N N22 . S7E B 2 . ? -0.494 2.152 11.845 1.00 17.28 ? 101 S7E A N22 1 HETATM 239 N N23 . S7E B 2 . ? -2.930 -2.660 31.823 1.00 21.07 ? 101 S7E A N23 1 HETATM 240 N N28 . S7E B 2 . ? -0.461 1.321 27.396 1.00 17.14 ? 101 S7E A N28 1 HETATM 241 N N33 . S7E B 2 . ? 3.000 1.920 23.415 1.00 15.06 ? 101 S7E A N33 1 HETATM 242 O O4 . S7E B 2 . ? -0.838 -1.125 31.258 1.00 19.63 ? 101 S7E A O4 1 HETATM 243 O O5 . S7E B 2 . ? -2.207 1.518 30.474 1.00 26.41 ? 101 S7E A O5 1 HETATM 244 O O6 . S7E B 2 . ? 3.191 2.888 26.798 1.00 17.35 ? 101 S7E A O6 1 HETATM 245 O O7 . S7E B 2 . ? 6.163 1.699 20.819 1.00 16.11 ? 101 S7E A O7 1 HETATM 246 O O8 . S7E B 2 . ? 4.554 0.174 14.288 1.00 15.79 ? 101 S7E A O8 1 HETATM 247 MG MG . MG C 3 . ? 1.470 11.612 11.808 1.00 20.42 ? 102 MG A MG 1 HETATM 248 NA NA . NA D 4 . ? -0.730 0.795 32.751 1.00 29.82 ? 103 NA A NA 1 HETATM 249 C C1 . EDO E 5 . ? 9.008 0.919 25.674 1.00 25.74 ? 104 EDO A C1 1 HETATM 250 O O1 . EDO E 5 . ? 10.021 1.141 24.679 1.00 29.46 ? 104 EDO A O1 1 HETATM 251 C C2 . EDO E 5 . ? 9.124 1.916 26.832 1.00 23.14 ? 104 EDO A C2 1 HETATM 252 O O2 . EDO E 5 . ? 9.236 3.272 26.381 1.00 25.11 ? 104 EDO A O2 1 HETATM 253 O O . HOH F 6 . ? -5.825 0.000 20.559 0.50 26.81 ? 201 HOH A O 1 HETATM 254 O O . HOH F 6 . ? 10.279 3.584 24.143 0.50 17.23 ? 202 HOH A O 1 HETATM 255 O O . HOH F 6 . ? -8.531 -5.652 30.395 1.00 32.68 ? 203 HOH A O 1 HETATM 256 O O . HOH F 6 . ? -6.125 -4.542 21.728 1.00 34.36 ? 204 HOH A O 1 HETATM 257 O O . HOH F 6 . ? -2.200 10.520 16.934 1.00 21.46 ? 205 HOH A O 1 HETATM 258 O O . HOH F 6 . ? 4.302 8.502 14.416 1.00 26.95 ? 206 HOH A O 1 HETATM 259 O O . HOH F 6 . ? 1.163 10.270 28.560 1.00 33.48 ? 207 HOH A O 1 HETATM 260 O O . HOH F 6 . ? 8.332 6.963 19.644 1.00 21.25 ? 208 HOH A O 1 HETATM 261 O O . HOH F 6 . ? 8.631 2.682 14.281 1.00 25.76 ? 209 HOH A O 1 HETATM 262 O O . HOH F 6 . ? 0.126 11.504 10.213 1.00 17.65 ? 210 HOH A O 1 HETATM 263 O O . HOH F 6 . ? -6.671 2.007 22.275 1.00 29.35 ? 211 HOH A O 1 HETATM 264 O O . HOH F 6 . ? -5.486 6.126 23.699 1.00 36.76 ? 212 HOH A O 1 HETATM 265 O O . HOH F 6 . ? 1.729 6.746 28.859 1.00 28.32 ? 213 HOH A O 1 HETATM 266 O O . HOH F 6 . ? 5.108 1.261 9.085 1.00 29.16 ? 214 HOH A O 1 HETATM 267 O O . HOH F 6 . ? -5.252 -4.003 32.475 1.00 26.09 ? 215 HOH A O 1 HETATM 268 O O . HOH F 6 . ? 7.060 0.757 13.261 1.00 21.61 ? 216 HOH A O 1 HETATM 269 O O . HOH F 6 . ? -0.145 10.945 13.059 1.00 16.87 ? 217 HOH A O 1 HETATM 270 O O . HOH F 6 . ? -6.212 -7.846 22.361 1.00 32.32 ? 218 HOH A O 1 HETATM 271 O O . HOH F 6 . ? 8.157 4.388 23.307 1.00 25.39 ? 219 HOH A O 1 HETATM 272 O O . HOH F 6 . ? 1.977 9.549 11.530 1.00 21.39 ? 220 HOH A O 1 HETATM 273 O O . HOH F 6 . ? -0.242 7.916 3.781 1.00 24.43 ? 221 HOH A O 1 HETATM 274 O O . HOH F 6 . ? 0.509 10.512 7.524 1.00 19.07 ? 222 HOH A O 1 HETATM 275 O O . HOH F 6 . ? -9.820 -10.739 30.838 0.50 20.44 ? 223 HOH A O 1 HETATM 276 O O . HOH F 6 . ? 4.895 9.278 16.835 1.00 24.89 ? 224 HOH A O 1 HETATM 277 O O . HOH F 6 . ? -0.849 8.326 22.098 1.00 25.33 ? 225 HOH A O 1 HETATM 278 O O . HOH F 6 . ? -7.470 6.502 8.001 1.00 31.17 ? 226 HOH A O 1 HETATM 279 O O . HOH F 6 . ? -3.118 7.860 20.089 1.00 26.28 ? 227 HOH A O 1 HETATM 280 O O . HOH F 6 . ? 7.264 9.004 17.637 1.00 23.44 ? 228 HOH A O 1 HETATM 281 O O . HOH F 6 . ? -9.560 -10.125 23.471 1.00 33.36 ? 229 HOH A O 1 HETATM 282 O O . HOH F 6 . ? 1.227 10.248 23.557 1.00 30.83 ? 230 HOH A O 1 HETATM 283 O O . HOH F 6 . ? 3.299 8.516 19.039 1.00 19.95 ? 231 HOH A O 1 HETATM 284 O O . HOH F 6 . ? 7.508 2.748 8.633 1.00 30.94 ? 232 HOH A O 1 HETATM 285 O O . HOH F 6 . ? -3.736 -0.352 33.708 1.00 32.73 ? 233 HOH A O 1 HETATM 286 O O . HOH F 6 . ? -9.519 7.913 9.958 1.00 34.20 ? 234 HOH A O 1 HETATM 287 O O . HOH F 6 . ? 8.693 4.949 17.899 1.00 28.95 ? 235 HOH A O 1 HETATM 288 O O . HOH F 6 . ? -5.455 5.130 21.528 1.00 34.31 ? 236 HOH A O 1 HETATM 289 O O . HOH F 6 . ? 0.125 6.279 0.626 1.00 33.13 ? 237 HOH A O 1 HETATM 290 O O . HOH F 6 . ? -1.650 0.405 6.406 1.00 40.10 ? 238 HOH A O 1 HETATM 291 O O . HOH F 6 . ? 6.223 6.223 6.223 0.33 27.59 ? 239 HOH A O 1 HETATM 292 O O . HOH F 6 . ? -4.272 7.299 0.683 1.00 40.98 ? 240 HOH A O 1 HETATM 293 O O . HOH F 6 . ? -1.287 2.782 33.958 1.00 38.57 ? 241 HOH A O 1 HETATM 294 O O . HOH F 6 . ? 1.546 1.809 32.412 1.00 30.11 ? 242 HOH A O 1 HETATM 295 O O . HOH F 6 . ? -3.909 7.564 22.670 1.00 37.86 ? 243 HOH A O 1 HETATM 296 O O . HOH F 6 . ? 1.155 9.305 20.728 1.00 26.83 ? 244 HOH A O 1 HETATM 297 O O . HOH F 6 . ? 10.574 2.929 12.271 1.00 22.58 ? 245 HOH A O 1 HETATM 298 O O . HOH F 6 . ? -6.499 0.587 32.481 1.00 40.54 ? 246 HOH A O 1 #