HEADER PROTEIN FIBRIL 23-AUG-18 6M9I TITLE L-GSTSTA FROM DEGENERATE OCTAMERIC REPEATS IN INAZ, RESIDUES 707-712 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICE NUCLEATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 707-712; COMPND 5 SYNONYM: INAZ; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: L-GSTSTA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. SYRINGAE; SOURCE 4 ORGANISM_TAXID: 321; SOURCE 5 OTHER_DETAILS: L-GSTSTA KEYWDS AMYLOID, RACEMIC, ICE NUCLEATION, MICROED, INAZ, PSEUDOMONAS KEYWDS 2 SYRINGAE, PROTEIN FIBRIL EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR C.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,D.CASCIO,T.GONEN, AUTHOR 2 M.R.SAWAYA,J.A.RODRIGUEZ REVDAT 3 13-MAR-24 6M9I 1 REMARK REVDAT 2 04-DEC-19 6M9I 1 REMARK REVDAT 1 27-MAR-19 6M9I 0 JRNL AUTH C.T.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO, JRNL AUTH 2 D.CASCIO,T.GONEN,M.R.SAWAYA,J.A.RODRIGUEZ JRNL TITL HOMOCHIRAL AND RACEMIC MICROED STRUCTURES OF A PEPTIDE JRNL TITL 2 REPEAT FROM THE ICE-NUCLEATION PROTEIN INAZ. JRNL REF IUCRJ V. 6 197 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 30867917 JRNL DOI 10.1107/S2052252518017621 REMARK 2 REMARK 2 RESOLUTION. 0.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 0.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 1747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.2715 - 1.7965 0.83 210 22 0.1877 0.1731 REMARK 3 2 1.7965 - 1.4295 0.88 206 23 0.1991 0.2374 REMARK 3 3 1.4295 - 1.2498 0.88 198 22 0.1965 0.1737 REMARK 3 4 1.2498 - 1.1360 0.87 196 22 0.2285 0.2244 REMARK 3 5 1.1360 - 1.0548 0.89 194 22 0.2262 0.3107 REMARK 3 6 1.0548 - 0.9928 0.87 190 20 0.2306 0.2908 REMARK 3 7 0.9928 - 0.9432 0.90 194 22 0.2927 0.3740 REMARK 3 8 0.9432 - 0.9022 0.82 186 20 0.3049 0.2866 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 1.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 35 REMARK 3 ANGLE : 1.057 47 REMARK 3 CHIRALITY : 0.037 7 REMARK 3 PLANARITY : 0.004 6 REMARK 3 DIHEDRAL : 7.542 10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236316. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 24-SEP-17 REMARK 240 TEMPERATURE (KELVIN) : NULL REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 200 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1760 REMARK 240 RESOLUTION RANGE HIGH (A) : 0.900 REMARK 240 RESOLUTION RANGE LOW (A) : 7.271 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 240 DATA REDUNDANCY : 4.269 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :0.90 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.00 REMARK 240 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 240 DATA REDUNDANCY IN SHELL : 4.21 REMARK 240 R MERGE FOR SHELL (I) : 0.35700 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : SHELXD REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 4.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 11.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 4.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EEX RELATED DB: PDB DBREF 6M9I A 707 712 UNP P06620 ICEN_PSESY 707 712 SEQRES 1 A 6 GLY SER THR SER THR ALA FORMUL 2 HOH *(H2 O) CRYST1 9.190 11.890 22.430 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.108814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.084104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.044583 0.00000 ATOM 1 N GLY A 707 3.159 1.988 -9.348 1.00 1.36 N ANISOU 1 N GLY A 707 232 173 113 -78 10 -54 N ATOM 2 CA GLY A 707 3.551 2.786 -8.206 1.00 0.36 C ANISOU 2 CA GLY A 707 51 31 53 -13 -8 -16 C ATOM 3 C GLY A 707 2.922 2.280 -6.940 1.00 0.13 C ANISOU 3 C GLY A 707 20 6 23 2 -2 -1 C ATOM 4 O GLY A 707 1.785 1.805 -6.933 1.00 0.55 O ANISOU 4 O GLY A 707 125 39 44 -18 -36 7 O ATOM 5 HA2 GLY A 707 4.515 2.761 -8.106 1.00 0.44 H ATOM 6 HA3 GLY A 707 3.277 3.707 -8.342 1.00 0.44 H ATOM 7 N SER A 708 3.657 2.389 -5.845 1.00 0.14 N ANISOU 7 N SER A 708 11 10 32 1 -6 -5 N ATOM 8 CA SER A 708 3.087 2.071 -4.554 1.00 0.34 C ANISOU 8 CA SER A 708 19 46 62 10 1 -5 C ATOM 9 C SER A 708 3.722 2.972 -3.515 1.00 0.84 C ANISOU 9 C SER A 708 55 195 69 24 -11 -49 C ATOM 10 O SER A 708 4.897 3.331 -3.616 1.00 0.83 O ANISOU 10 O SER A 708 73 158 86 23 -24 -56 O ATOM 11 CB SER A 708 3.288 0.598 -4.192 1.00 1.22 C ANISOU 11 CB SER A 708 178 154 129 -65 -26 46 C ATOM 12 OG SER A 708 4.664 0.280 -4.024 1.00 2.01 O ANISOU 12 OG SER A 708 373 193 197 67 -136 -11 O ATOM 13 H SER A 708 4.479 2.642 -5.824 1.00 0.18 H ATOM 14 HA SER A 708 2.134 2.252 -4.572 1.00 0.42 H ATOM 15 HB2 SER A 708 2.821 0.413 -3.363 1.00 1.47 H ATOM 16 HB3 SER A 708 2.925 0.048 -4.904 1.00 1.47 H ATOM 17 HG SER A 708 4.993 0.747 -3.409 1.00 2.43 H ATOM 18 N THR A 709 2.927 3.347 -2.522 1.00 0.60 N ANISOU 18 N THR A 709 42 139 46 29 -8 -27 N ATOM 19 CA THR A 709 3.435 4.070 -1.371 1.00 0.57 C ANISOU 19 CA THR A 709 49 114 53 36 0 -10 C ATOM 20 C THR A 709 2.700 3.564 -0.151 1.00 0.43 C ANISOU 20 C THR A 709 27 102 33 5 -2 -22 C ATOM 21 O THR A 709 1.470 3.563 -0.119 1.00 0.37 O ANISOU 21 O THR A 709 33 76 31 -22 7 -7 O ATOM 22 CB THR A 709 3.199 5.576 -1.493 1.00 0.96 C ANISOU 22 CB THR A 709 154 90 122 -22 5 10 C ATOM 23 OG1 THR A 709 3.913 6.082 -2.623 1.00 1.06 O ANISOU 23 OG1 THR A 709 188 66 148 -27 -23 33 O ATOM 24 CG2 THR A 709 3.671 6.285 -0.222 1.00 0.84 C ANISOU 24 CG2 THR A 709 85 126 109 -44 30 20 C ATOM 25 H THR A 709 2.081 3.193 -2.493 1.00 0.73 H ATOM 26 HA THR A 709 4.385 3.903 -1.263 1.00 0.70 H ATOM 27 HB THR A 709 2.251 5.747 -1.607 1.00 1.17 H ATOM 28 HG1 THR A 709 3.788 6.909 -2.696 1.00 1.29 H ATOM 29 HG21 THR A 709 3.521 7.240 -0.299 1.00 1.03 H ATOM 30 HG22 THR A 709 3.181 5.950 0.546 1.00 1.03 H ATOM 31 HG23 THR A 709 4.618 6.124 -0.085 1.00 1.03 H ATOM 32 N SER A 710 3.458 3.157 0.854 1.00 0.35 N ANISOU 32 N SER A 710 22 80 29 -8 0 -9 N ATOM 33 CA SER A 710 2.875 2.741 2.110 1.00 0.42 C ANISOU 33 CA SER A 710 21 71 67 -11 -5 -2 C ATOM 34 C SER A 710 3.613 3.419 3.246 1.00 0.19 C ANISOU 34 C SER A 710 12 29 32 -9 -1 -1 C ATOM 35 O SER A 710 4.819 3.673 3.163 1.00 0.44 O ANISOU 35 O SER A 710 62 75 30 3 22 -5 O ATOM 36 CB SER A 710 2.942 1.228 2.276 1.00 1.51 C ANISOU 36 CB SER A 710 130 250 193 22 -55 -61 C ATOM 37 OG SER A 710 2.310 0.587 1.183 1.00 2.34 O ANISOU 37 OG SER A 710 359 248 283 -48 -31 -74 O ATOM 38 H SER A 710 4.317 3.113 0.832 1.00 0.43 H ATOM 39 HA SER A 710 1.944 3.013 2.141 1.00 0.52 H ATOM 40 HB2 SER A 710 3.872 0.953 2.311 1.00 1.83 H ATOM 41 HB3 SER A 710 2.489 0.978 3.097 1.00 1.83 H ATOM 42 HG SER A 710 2.348 -0.247 1.277 1.00 2.83 H ATOM 43 N THR A 711 2.876 3.725 4.306 1.00 0.27 N ANISOU 43 N THR A 711 42 17 44 -1 23 -2 N ATOM 44 CA THR A 711 3.475 4.215 5.528 1.00 0.25 C ANISOU 44 CA THR A 711 19 17 58 -2 18 -6 C ATOM 45 C THR A 711 2.882 3.490 6.714 1.00 0.38 C ANISOU 45 C THR A 711 25 58 60 -13 11 8 C ATOM 46 O THR A 711 1.789 2.920 6.645 1.00 0.76 O ANISOU 46 O THR A 711 67 166 53 -48 5 -4 O ATOM 47 CB THR A 711 3.235 5.715 5.762 1.00 0.95 C ANISOU 47 CB THR A 711 97 62 202 19 20 -2 C ATOM 48 OG1 THR A 711 1.845 5.939 6.024 1.00 1.62 O ANISOU 48 OG1 THR A 711 245 118 252 60 67 -25 O ATOM 49 CG2 THR A 711 3.690 6.519 4.570 1.00 1.07 C ANISOU 49 CG2 THR A 711 153 68 186 41 12 20 C ATOM 50 H THR A 711 2.019 3.657 4.337 1.00 0.34 H ATOM 51 HA THR A 711 4.431 4.052 5.510 1.00 0.31 H ATOM 52 HB THR A 711 3.752 6.001 6.531 1.00 1.16 H ATOM 53 HG1 THR A 711 1.705 6.757 6.153 1.00 1.96 H ATOM 54 HG21 THR A 711 3.534 7.463 4.728 1.00 1.30 H ATOM 55 HG22 THR A 711 4.637 6.377 4.416 1.00 1.30 H ATOM 56 HG23 THR A 711 3.198 6.246 3.780 1.00 1.30 H ATOM 57 N ALA A 712 3.614 3.553 7.812 1.00 0.54 N ANISOU 57 N ALA A 712 43 72 92 -24 -9 -15 N ATOM 58 CA ALA A 712 3.099 3.192 9.112 1.00 1.28 C ANISOU 58 CA ALA A 712 139 211 134 -9 -71 -37 C ATOM 59 C ALA A 712 3.984 3.851 10.148 1.00 1.47 C ANISOU 59 C ALA A 712 205 229 124 -10 -23 -50 C ATOM 60 O ALA A 712 5.039 4.385 9.813 1.00 2.70 O ANISOU 60 O ALA A 712 368 441 216 -90 -68 -112 O ATOM 61 CB ALA A 712 3.076 1.712 9.288 1.00 3.27 C ANISOU 61 CB ALA A 712 631 392 218 44 -124 -69 C ATOM 62 OXT ALA A 712 3.635 3.883 11.325 1.00 0.81 O ANISOU 62 OXT ALA A 712 159 68 79 -34 -8 -21 O ATOM 63 H ALA A 712 4.435 3.809 7.826 1.00 0.67 H ATOM 64 HA ALA A 712 2.196 3.532 9.212 1.00 1.55 H ATOM 65 HB1 ALA A 712 2.726 1.504 10.169 1.00 3.94 H ATOM 66 HB2 ALA A 712 2.507 1.322 8.606 1.00 3.94 H ATOM 67 HB3 ALA A 712 3.979 1.369 9.202 1.00 3.94 H TER 68 ALA A 712 HETATM 69 O HOH A 801 4.988 0.253 -1.287 1.00 3.28 O ANISOU 69 O HOH A 801 426 437 385 122 -121 160 O MASTER 169 0 0 0 0 0 0 6 37 1 0 1 END