HEADER PROTEIN FIBRIL 23-AUG-18 6M9J TITLE RACEMIC-GSTSTA FROM DEGENERATE OCTAMERIC REPEATS IN INAZ, RESIDUES TITLE 2 707-712 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICE NUCLEATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 707-712; COMPND 5 SYNONYM: INAZ; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: DL-GSTSTA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. SYRINGAE; SOURCE 4 ORGANISM_TAXID: 321; SOURCE 5 OTHER_DETAILS: DL-GSTSTA KEYWDS AMYLOID, RACEMIC, ICE NUCLEATION, MICROED, INAZ, PSEUDOMONAS KEYWDS 2 SYRINGAE, PROTEIN FIBRIL EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR C.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,D.CASCIO,T.GONEN, AUTHOR 2 M.R.SAWAYA,J.A.RODRIGUEZ REVDAT 3 13-MAR-24 6M9J 1 REMARK REVDAT 2 04-DEC-19 6M9J 1 REMARK REVDAT 1 27-MAR-19 6M9J 0 JRNL AUTH C.T.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO, JRNL AUTH 2 D.CASCIO,T.GONEN,M.R.SAWAYA,J.A.RODRIGUEZ JRNL TITL HOMOCHIRAL AND RACEMIC MICROED STRUCTURES OF A PEPTIDE JRNL TITL 2 REPEAT FROM THE ICE-NUCLEATION PROTEIN INAZ. JRNL REF IUCRJ V. 6 197 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 30867917 JRNL DOI 10.1107/S2052252518017621 REMARK 2 REMARK 2 RESOLUTION. 0.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.4 REMARK 3 NUMBER OF REFLECTIONS : 2896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.6290 - 1.7933 0.76 321 35 0.1993 0.2284 REMARK 3 2 1.7933 - 1.4264 0.77 325 36 0.2450 0.2452 REMARK 3 3 1.4264 - 1.2470 0.77 326 37 0.2554 0.2361 REMARK 3 4 1.2470 - 1.1334 0.77 320 36 0.2410 0.2590 REMARK 3 5 1.1334 - 1.0524 0.78 323 36 0.2013 0.2204 REMARK 3 6 1.0524 - 0.9904 0.77 322 36 0.2423 0.2493 REMARK 3 7 0.9904 - 0.9409 0.80 330 36 0.2575 0.2962 REMARK 3 8 0.9409 - 0.9000 0.78 339 38 0.3109 0.4214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 3.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 35 REMARK 3 ANGLE : 1.119 47 REMARK 3 CHIRALITY : 0.071 7 REMARK 3 PLANARITY : 0.004 6 REMARK 3 DIHEDRAL : 7.023 10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236321. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 27-NOV-17 REMARK 240 TEMPERATURE (KELVIN) : NULL REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 200 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 2906 REMARK 240 RESOLUTION RANGE HIGH (A) : 0.900 REMARK 240 RESOLUTION RANGE LOW (A) : 7.629 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 77.6 REMARK 240 DATA REDUNDANCY : 3.401 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :0.90 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :0.92 REMARK 240 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 240 DATA REDUNDANCY IN SHELL : 3.17 REMARK 240 R MERGE FOR SHELL (I) : 0.33200 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : SHELXD REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21/c 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z+1/2 REMARK 290 3555 -X,-Y,-Z REMARK 290 4555 X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 -2.59669 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 4.61000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 10.05512 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 -2.59669 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 4.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.05512 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6M7M RELATED DB: PDB DBREF 6M9J A 707 712 UNP P06620 ICEN_PSESY 707 712 SEQRES 1 A 6 GLY SER THR SER THR ALA FORMUL 2 HOH *3(H2 O) CRYST1 14.030 9.220 20.770 90.00 104.48 90.00 P 1 21/c 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.071276 0.000000 0.018412 0.00000 SCALE2 0.000000 0.108460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.049727 0.00000 ATOM 1 N GLY A 707 17.516 7.484 13.377 1.00 3.13 N ANISOU 1 N GLY A 707 300 592 298 -1 150 -20 N ATOM 2 CA GLY A 707 17.329 8.122 12.088 1.00 1.75 C ANISOU 2 CA GLY A 707 146 358 160 -10 53 53 C ATOM 3 C GLY A 707 16.217 7.455 11.323 1.00 1.19 C ANISOU 3 C GLY A 707 119 207 129 33 -22 40 C ATOM 4 O GLY A 707 15.860 6.314 11.611 1.00 1.85 O ANISOU 4 O GLY A 707 229 300 173 52 105 2 O ATOM 5 HA2 GLY A 707 17.106 9.057 12.212 1.00 2.10 H ATOM 6 HA3 GLY A 707 18.146 8.061 11.568 1.00 2.10 H ATOM 7 N SER A 708 15.651 8.163 10.355 1.00 1.29 N ANISOU 7 N SER A 708 192 149 149 61 -92 -47 N ATOM 8 CA SER A 708 14.613 7.580 9.518 1.00 1.31 C ANISOU 8 CA SER A 708 256 104 140 53 16 -34 C ATOM 9 C SER A 708 14.665 8.201 8.132 1.00 1.55 C ANISOU 9 C SER A 708 325 117 145 0 -85 -26 C ATOM 10 O SER A 708 15.106 9.342 7.950 1.00 2.02 O ANISOU 10 O SER A 708 392 128 248 4 -177 -3 O ATOM 11 CB SER A 708 13.215 7.766 10.125 1.00 2.57 C ANISOU 11 CB SER A 708 251 463 264 -124 96 -76 C ATOM 12 OG SER A 708 12.793 9.113 10.054 1.00 3.67 O ANISOU 12 OG SER A 708 278 638 479 185 86 13 O ATOM 13 H SER A 708 15.849 8.978 10.162 1.00 1.55 H ATOM 14 HA SER A 708 14.777 6.628 9.428 1.00 1.58 H ATOM 15 HB2 SER A 708 12.585 7.214 9.636 1.00 3.09 H ATOM 16 HB3 SER A 708 13.239 7.494 11.056 1.00 3.09 H ATOM 17 HG SER A 708 12.766 9.363 9.253 1.00 4.41 H ATOM 18 N THR A 709 14.179 7.444 7.158 1.00 1.48 N ANISOU 18 N THR A 709 288 129 143 78 -84 -45 N ATOM 19 CA THR A 709 14.075 7.916 5.787 1.00 1.16 C ANISOU 19 CA THR A 709 143 100 197 31 -88 -55 C ATOM 20 C THR A 709 12.888 7.260 5.130 1.00 1.16 C ANISOU 20 C THR A 709 204 73 163 10 -104 -7 C ATOM 21 O THR A 709 12.589 6.102 5.414 1.00 1.75 O ANISOU 21 O THR A 709 269 144 253 -14 -93 76 O ATOM 22 CB THR A 709 15.311 7.552 4.982 1.00 3.14 C ANISOU 22 CB THR A 709 170 547 478 14 56 -110 C ATOM 23 OG1 THR A 709 16.453 8.066 5.659 1.00 5.42 O ANISOU 23 OG1 THR A 709 337 953 771 84 203 -59 O ATOM 24 CG2 THR A 709 15.251 8.107 3.586 1.00 5.25 C ANISOU 24 CG2 THR A 709 428 868 699 104 288 -22 C ATOM 25 H THR A 709 13.898 6.638 7.269 1.00 1.77 H ATOM 26 HA THR A 709 13.956 8.878 5.772 1.00 1.39 H ATOM 27 HB THR A 709 15.382 6.587 4.923 1.00 3.77 H ATOM 28 HG1 THR A 709 17.150 7.876 5.231 1.00 6.51 H ATOM 29 HG21 THR A 709 16.051 7.861 3.096 1.00 6.30 H ATOM 30 HG22 THR A 709 14.475 7.754 3.122 1.00 6.30 H ATOM 31 HG23 THR A 709 15.186 9.075 3.617 1.00 6.30 H ATOM 32 N SER A 710 12.204 8.007 4.268 1.00 1.33 N ANISOU 32 N SER A 710 277 91 138 -36 -102 19 N ATOM 33 CA SER A 710 11.157 7.410 3.469 1.00 1.60 C ANISOU 33 CA SER A 710 316 107 187 26 -136 -15 C ATOM 34 C SER A 710 11.058 8.138 2.137 1.00 1.84 C ANISOU 34 C SER A 710 393 119 185 28 -136 -13 C ATOM 35 O SER A 710 11.360 9.332 2.048 1.00 1.92 O ANISOU 35 O SER A 710 413 152 165 14 -120 1 O ATOM 36 CB SER A 710 9.814 7.404 4.201 1.00 2.86 C ANISOU 36 CB SER A 710 186 449 451 105 -23 -119 C ATOM 37 OG SER A 710 8.889 6.656 3.455 1.00 5.33 O ANISOU 37 OG SER A 710 257 928 841 25 108 -42 O ATOM 38 H SER A 710 12.327 8.847 4.133 1.00 1.60 H ATOM 39 HA SER A 710 11.396 6.488 3.284 1.00 1.93 H ATOM 40 HB2 SER A 710 9.926 6.999 5.075 1.00 3.43 H ATOM 41 HB3 SER A 710 9.493 8.315 4.290 1.00 3.43 H ATOM 42 HG SER A 710 8.146 6.644 3.846 1.00 6.40 H ATOM 43 N THR A 711 10.666 7.393 1.098 1.00 1.36 N ANISOU 43 N THR A 711 270 107 140 -1 -103 -8 N ATOM 44 CA THR A 711 10.364 7.961 -0.205 1.00 0.70 C ANISOU 44 CA THR A 711 85 77 107 19 14 48 C ATOM 45 C THR A 711 9.034 7.421 -0.690 1.00 1.07 C ANISOU 45 C THR A 711 153 145 111 -8 -36 -35 C ATOM 46 O THR A 711 8.605 6.334 -0.306 1.00 1.63 O ANISOU 46 O THR A 711 126 303 190 -27 34 52 O ATOM 47 CB THR A 711 11.418 7.660 -1.284 1.00 2.11 C ANISOU 47 CB THR A 711 129 394 278 25 69 18 C ATOM 48 OG1 THR A 711 11.443 6.250 -1.562 1.00 3.58 O ANISOU 48 OG1 THR A 711 347 501 512 -13 230 -100 O ATOM 49 CG2 THR A 711 12.772 8.140 -0.859 1.00 2.49 C ANISOU 49 CG2 THR A 711 153 435 359 65 80 13 C ATOM 50 H THR A 711 10.568 6.540 1.132 1.00 1.63 H ATOM 51 HA THR A 711 10.286 8.924 -0.121 1.00 0.85 H ATOM 52 HB THR A 711 11.178 8.134 -2.096 1.00 2.53 H ATOM 53 HG1 THR A 711 12.019 6.083 -2.151 1.00 4.30 H ATOM 54 HG21 THR A 711 13.425 7.943 -1.549 1.00 2.99 H ATOM 55 HG22 THR A 711 12.752 9.098 -0.708 1.00 2.99 H ATOM 56 HG23 THR A 711 13.038 7.697 -0.038 1.00 2.99 H ATOM 57 N ALA A 712 8.405 8.206 -1.568 1.00 1.30 N ANISOU 57 N ALA A 712 161 180 155 30 -61 -43 N ATOM 58 CA ALA A 712 7.203 7.824 -2.292 1.00 1.96 C ANISOU 58 CA ALA A 712 138 307 299 64 55 -61 C ATOM 59 C ALA A 712 7.285 8.356 -3.711 1.00 2.70 C ANISOU 59 C ALA A 712 309 511 207 -63 110 -3 C ATOM 60 O ALA A 712 7.932 9.381 -3.940 1.00 4.52 O ANISOU 60 O ALA A 712 639 703 377 -45 251 107 O ATOM 61 CB ALA A 712 5.946 8.388 -1.617 1.00 2.97 C ANISOU 61 CB ALA A 712 231 447 449 -11 170 -36 C ATOM 62 OXT ALA A 712 6.691 7.807 -4.647 1.00 5.34 O ANISOU 62 OXT ALA A 712 427 1169 432 -230 97 -67 O ATOM 63 H ALA A 712 8.674 8.998 -1.765 1.00 1.56 H ATOM 64 HA ALA A 712 7.133 6.857 -2.324 1.00 2.35 H ATOM 65 HB1 ALA A 712 5.166 8.115 -2.125 1.00 3.56 H ATOM 66 HB2 ALA A 712 5.891 8.041 -0.713 1.00 3.56 H ATOM 67 HB3 ALA A 712 6.006 9.356 -1.597 1.00 3.56 H TER 68 ALA A 712 HETATM 69 O HOH A 801 7.762 5.155 5.414 1.00 27.35 O ANISOU 69 O HOH A 801 3151 4474 2770 616 -605 -594 O HETATM 70 O HOH A 802 11.096 9.136 7.873 1.00 25.39 O ANISOU 70 O HOH A 802 3194 3150 3303 1805 -493 197 O HETATM 71 O HOH A 803 7.081 7.957 6.404 1.00 9.68 O ANISOU 71 O HOH A 803 1481 1411 786 -29 436 383 O MASTER 169 0 0 0 0 0 0 6 39 1 0 1 END