0.011673
0.006739
0.000000
0.000000
0.013478
0.000000
0.000000
0.000000
0.018031
0.000000
0.000000
0.000000
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
85.670
85.670
55.460
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O8 P
308.182
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
S
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
O
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
R
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
N
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
N
C
N
401
N
N
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
O
N
407
R
C
N
408
N
C
N
409
S
C
N
410
R
C
N
411
N
O
N
412
N
O
N
413
N
C
N
414
N
O
N
415
N
P
N
416
N
O
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
TO BE PUBLISHED
0353
Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 in complex with dUMP (Deoxyuridine 5'-monophosphate)
10.2210/pdb6mao/pdb
pdb_00006mao
100
1
CCD
2018-08-21
RIGAKU SATURN 944+
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E+ SUPERBRIGHT
17391.789
Deoxyuridine 5'-triphosphate nucleotidohydrolase
3.6.1.23
1
man
polymer
308.182
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
1
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
134
nat
water
dUTPase,dUTP pyrophosphatase
no
no
MAHHHHHHMHQVIQLKILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVAPQQTVLLPTGIAIYIADPKLAAVILPRS
GLGHKNGIVLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQASFEVVNEFTESSRGEGGFGSSGRY
MAHHHHHHMHQVIQLKILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVAPQQTVLLPTGIAIYIADPKLAAVILPRS
GLGHKNGIVLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQASFEVVNEFTESSRGEGGFGSSGRY
A
SSGCID-LepnA.01206.a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Philadelphia 1 / ATCC 33152 / DSM 7513
sample
1
160
33152
dut, lpg2487
272624
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
866768
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
plasmid
Biological sequence
LepnA.01206.a.B1
1
3.38
63.6
VAPOR DIFFUSION, SITTING DROP
6.5
Molecular Dimensions Morpheus screen, condition C4: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD 30mM each sodium nitrate, disodium hydrogen phosphate, ammonium sulfate: 100mM MES/imidazole pH 6.5: LepnA.01206.a.B1.PS38438 at 24.33mg/ml: 2h soak with 5mM MgCl2 + dUTP with was converted to dUMP: cryo: direct: EG in two steps: tray 301633a1, puck PXP9-8
285
Seattle Structural Genomics Center for Infectious Disease
SSGCID
NIAID, National Institute of Allergy and Infectious Diseases
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2018-09-12
1
1
2023-10-11
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
apo struture
Y
RCSB
Y
RCSB
2018-08-28
REL
REL
UMP
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
SO4
SULFATE ION
HOH
water
6MAI
apo structure, 6MAI
PDB
experimental model
UMP
201
2
UMP
UMP
201
A
MPD
202
3
MPD
MPD
202
A
SO4
204
4
SO4
SO4
203
A
HOH
30
5
HOH
HOH
301
A
HOH
21
5
HOH
HOH
302
A
HOH
187
5
HOH
HOH
303
A
HOH
149
5
HOH
HOH
304
A
HOH
76
5
HOH
HOH
305
A
HOH
118
5
HOH
HOH
306
A
HOH
27
5
HOH
HOH
307
A
HOH
122
5
HOH
HOH
308
A
HOH
70
5
HOH
HOH
309
A
HOH
59
5
HOH
HOH
310
A
HOH
147
5
HOH
HOH
311
A
HOH
157
5
HOH
HOH
312
A
HOH
176
5
HOH
HOH
313
A
HOH
58
5
HOH
HOH
314
A
HOH
159
5
HOH
HOH
315
A
HOH
154
5
HOH
HOH
316
A
HOH
25
5
HOH
HOH
317
A
HOH
26
5
HOH
HOH
318
A
HOH
37
5
HOH
HOH
319
A
HOH
170
5
HOH
HOH
320
A
HOH
6
5
HOH
HOH
321
A
HOH
87
5
HOH
HOH
322
A
HOH
79
5
HOH
HOH
323
A
HOH
84
5
HOH
HOH
324
A
HOH
117
5
HOH
HOH
325
A
HOH
33
5
HOH
HOH
326
A
HOH
153
5
HOH
HOH
327
A
HOH
4
5
HOH
HOH
328
A
HOH
75
5
HOH
HOH
329
A
HOH
5
5
HOH
HOH
330
A
HOH
22
5
HOH
HOH
331
A
HOH
95
5
HOH
HOH
332
A
HOH
2
5
HOH
HOH
333
A
HOH
64
5
HOH
HOH
334
A
HOH
83
5
HOH
HOH
335
A
HOH
51
5
HOH
HOH
336
A
HOH
17
5
HOH
HOH
337
A
HOH
106
5
HOH
HOH
338
A
HOH
74
5
HOH
HOH
339
A
HOH
78
5
HOH
HOH
340
A
HOH
57
5
HOH
HOH
341
A
HOH
65
5
HOH
HOH
342
A
HOH
16
5
HOH
HOH
343
A
HOH
89
5
HOH
HOH
344
A
HOH
60
5
HOH
HOH
345
A
HOH
80
5
HOH
HOH
346
A
HOH
85
5
HOH
HOH
347
A
HOH
23
5
HOH
HOH
348
A
HOH
8
5
HOH
HOH
349
A
HOH
45
5
HOH
HOH
350
A
HOH
44
5
HOH
HOH
351
A
HOH
1
5
HOH
HOH
352
A
HOH
9
5
HOH
HOH
353
A
HOH
63
5
HOH
HOH
354
A
HOH
96
5
HOH
HOH
355
A
HOH
31
5
HOH
HOH
356
A
HOH
14
5
HOH
HOH
357
A
HOH
3
5
HOH
HOH
358
A
HOH
140
5
HOH
HOH
359
A
HOH
46
5
HOH
HOH
360
A
HOH
81
5
HOH
HOH
361
A
HOH
69
5
HOH
HOH
362
A
HOH
90
5
HOH
HOH
363
A
HOH
98
5
HOH
HOH
364
A
HOH
54
5
HOH
HOH
365
A
HOH
29
5
HOH
HOH
366
A
HOH
7
5
HOH
HOH
367
A
HOH
34
5
HOH
HOH
368
A
HOH
61
5
HOH
HOH
369
A
HOH
10
5
HOH
HOH
370
A
HOH
35
5
HOH
HOH
371
A
HOH
108
5
HOH
HOH
372
A
HOH
36
5
HOH
HOH
373
A
HOH
55
5
HOH
HOH
374
A
HOH
91
5
HOH
HOH
375
A
HOH
67
5
HOH
HOH
376
A
HOH
77
5
HOH
HOH
377
A
HOH
40
5
HOH
HOH
378
A
HOH
178
5
HOH
HOH
379
A
HOH
47
5
HOH
HOH
380
A
HOH
50
5
HOH
HOH
381
A
HOH
110
5
HOH
HOH
382
A
HOH
48
5
HOH
HOH
383
A
HOH
167
5
HOH
HOH
384
A
HOH
20
5
HOH
HOH
385
A
HOH
68
5
HOH
HOH
386
A
HOH
133
5
HOH
HOH
387
A
HOH
93
5
HOH
HOH
388
A
HOH
175
5
HOH
HOH
389
A
HOH
39
5
HOH
HOH
390
A
HOH
183
5
HOH
HOH
391
A
HOH
42
5
HOH
HOH
392
A
HOH
18
5
HOH
HOH
393
A
HOH
97
5
HOH
HOH
394
A
HOH
114
5
HOH
HOH
395
A
HOH
172
5
HOH
HOH
396
A
HOH
119
5
HOH
HOH
397
A
HOH
13
5
HOH
HOH
398
A
HOH
164
5
HOH
HOH
399
A
HOH
177
5
HOH
HOH
400
A
HOH
129
5
HOH
HOH
401
A
HOH
107
5
HOH
HOH
402
A
HOH
62
5
HOH
HOH
403
A
HOH
188
5
HOH
HOH
404
A
HOH
103
5
HOH
HOH
405
A
HOH
41
5
HOH
HOH
406
A
HOH
120
5
HOH
HOH
407
A
HOH
138
5
HOH
HOH
408
A
HOH
111
5
HOH
HOH
409
A
HOH
92
5
HOH
HOH
410
A
HOH
100
5
HOH
HOH
411
A
HOH
56
5
HOH
HOH
412
A
HOH
165
5
HOH
HOH
413
A
HOH
180
5
HOH
HOH
414
A
HOH
73
5
HOH
HOH
415
A
HOH
184
5
HOH
HOH
416
A
HOH
105
5
HOH
HOH
417
A
HOH
94
5
HOH
HOH
418
A
HOH
109
5
HOH
HOH
419
A
HOH
102
5
HOH
HOH
420
A
HOH
132
5
HOH
HOH
421
A
HOH
82
5
HOH
HOH
422
A
HOH
182
5
HOH
HOH
423
A
HOH
179
5
HOH
HOH
424
A
HOH
71
5
HOH
HOH
425
A
HOH
143
5
HOH
HOH
426
A
HOH
11
5
HOH
HOH
427
A
HOH
127
5
HOH
HOH
428
A
HOH
72
5
HOH
HOH
429
A
HOH
113
5
HOH
HOH
430
A
HOH
185
5
HOH
HOH
431
A
HOH
88
5
HOH
HOH
432
A
HOH
142
5
HOH
HOH
433
A
HOH
173
5
HOH
HOH
434
A
n
1
-7
A
n
2
-6
A
n
3
-5
A
n
4
-4
A
n
5
-3
A
n
6
-2
A
n
7
-1
A
n
8
0
A
n
9
1
A
HIS
2
n
10
HIS
2
A
GLN
3
n
11
GLN
3
A
VAL
4
n
12
VAL
4
A
ILE
5
n
13
ILE
5
A
GLN
6
n
14
GLN
6
A
LEU
7
n
15
LEU
7
A
LYS
8
n
16
LYS
8
A
ILE
9
n
17
ILE
9
A
LEU
10
n
18
LEU
10
A
ASP
11
n
19
ASP
11
A
SER
12
n
20
SER
12
A
ARG
13
n
21
ARG
13
A
ILE
14
n
22
ILE
14
A
GLY
15
n
23
GLY
15
A
ASP
16
n
24
ASP
16
A
THR
17
n
25
THR
17
A
ILE
18
n
26
ILE
18
A
PRO
19
n
27
PRO
19
A
LEU
20
n
28
LEU
20
A
PRO
21
n
29
PRO
21
A
ALA
22
n
30
ALA
22
A
TYR
23
n
31
TYR
23
A
ALA
24
n
32
ALA
24
A
THR
25
n
33
THR
25
A
ASP
26
n
34
ASP
26
A
GLY
27
n
35
GLY
27
A
SER
28
n
36
SER
28
A
ALA
29
n
37
ALA
29
A
GLY
30
n
38
GLY
30
A
LEU
31
n
39
LEU
31
A
ASP
32
n
40
ASP
32
A
LEU
33
n
41
LEU
33
A
ARG
34
n
42
ARG
34
A
VAL
35
n
43
VAL
35
A
CYS
36
n
44
CYS
36
A
ILE
37
n
45
ILE
37
A
SER
38
n
46
SER
38
A
GLU
39
n
47
GLU
39
A
PRO
40
n
48
PRO
40
A
MET
41
n
49
MET
41
A
GLN
42
n
50
GLN
42
A
VAL
43
n
51
VAL
43
A
ALA
44
n
52
ALA
44
A
PRO
45
n
53
PRO
45
A
GLN
46
n
54
GLN
46
A
GLN
47
n
55
GLN
47
A
THR
48
n
56
THR
48
A
VAL
49
n
57
VAL
49
A
LEU
50
n
58
LEU
50
A
LEU
51
n
59
LEU
51
A
PRO
52
n
60
PRO
52
A
THR
53
n
61
THR
53
A
GLY
54
n
62
GLY
54
A
ILE
55
n
63
ILE
55
A
ALA
56
n
64
ALA
56
A
ILE
57
n
65
ILE
57
A
TYR
58
n
66
TYR
58
A
ILE
59
n
67
ILE
59
A
ALA
60
n
68
ALA
60
A
ASP
61
n
69
ASP
61
A
PRO
62
n
70
PRO
62
A
LYS
63
n
71
LYS
63
A
LEU
64
n
72
LEU
64
A
ALA
65
n
73
ALA
65
A
ALA
66
n
74
ALA
66
A
VAL
67
n
75
VAL
67
A
ILE
68
n
76
ILE
68
A
LEU
69
n
77
LEU
69
A
PRO
70
n
78
PRO
70
A
ARG
71
n
79
ARG
71
A
SER
72
n
80
SER
72
A
GLY
73
n
81
GLY
73
A
LEU
74
n
82
LEU
74
A
GLY
75
n
83
GLY
75
A
HIS
76
n
84
HIS
76
A
LYS
77
n
85
LYS
77
A
ASN
78
n
86
ASN
78
A
GLY
79
n
87
GLY
79
A
ILE
80
n
88
ILE
80
A
VAL
81
n
89
VAL
81
A
LEU
82
n
90
LEU
82
A
GLY
83
n
91
GLY
83
A
ASN
84
n
92
ASN
84
A
LEU
85
n
93
LEU
85
A
VAL
86
n
94
VAL
86
A
GLY
87
n
95
GLY
87
A
LEU
88
n
96
LEU
88
A
ILE
89
n
97
ILE
89
A
ASP
90
n
98
ASP
90
A
SER
91
n
99
SER
91
A
ASP
92
n
100
ASP
92
A
TYR
93
n
101
TYR
93
A
GLN
94
n
102
GLN
94
A
GLY
95
n
103
GLY
95
A
GLU
96
n
104
GLU
96
A
LEU
97
n
105
LEU
97
A
LYS
98
n
106
LYS
98
A
ILE
99
n
107
ILE
99
A
SER
100
n
108
SER
100
A
CYS
101
n
109
CYS
101
A
TRP
102
n
110
TRP
102
A
ASN
103
n
111
ASN
103
A
ARG
104
n
112
ARG
104
A
SER
105
n
113
SER
105
A
GLN
106
n
114
GLN
106
A
GLU
107
n
115
GLU
107
A
HIS
108
n
116
HIS
108
A
PHE
109
n
117
PHE
109
A
THR
110
n
118
THR
110
A
VAL
111
n
119
VAL
111
A
ASN
112
n
120
ASN
112
A
PRO
113
n
121
PRO
113
A
GLY
114
n
122
GLY
114
A
ASP
115
n
123
ASP
115
A
ARG
116
n
124
ARG
116
A
ILE
117
n
125
ILE
117
A
ALA
118
n
126
ALA
118
A
GLN
119
n
127
GLN
119
A
LEU
120
n
128
LEU
120
A
VAL
121
n
129
VAL
121
A
PHE
122
n
130
PHE
122
A
ILE
123
n
131
ILE
123
A
PRO
124
n
132
PRO
124
A
VAL
125
n
133
VAL
125
A
VAL
126
n
134
VAL
126
A
GLN
127
n
135
GLN
127
A
ALA
128
n
136
ALA
128
A
SER
129
n
137
SER
129
A
PHE
130
n
138
PHE
130
A
GLU
131
n
139
GLU
131
A
VAL
132
n
140
VAL
132
A
VAL
133
n
141
VAL
133
A
ASN
134
n
142
ASN
134
A
GLU
135
n
143
GLU
135
A
PHE
136
n
144
PHE
136
A
THR
137
n
145
THR
137
A
GLU
138
n
146
GLU
138
A
n
147
139
A
n
148
140
A
n
149
141
A
n
150
142
A
n
151
143
A
n
152
144
A
n
153
145
A
n
154
146
A
n
155
147
A
n
156
148
A
n
157
149
A
n
158
150
A
n
159
151
A
n
160
152
A
8.8412
0.6294
-6.1484
2.0796
-0.4200
4.2766
-0.1591
-0.9190
0.2457
0.4248
0.0813
-0.0502
0.3009
0.4145
0.0420
0.2504
-0.0567
-0.0423
0.5094
-0.0428
0.2722
refined
-24.4272
28.7947
16.6315
X-RAY DIFFRACTION
8.7080
1.6083
0.3021
2.5066
-1.3352
1.0526
-0.0466
0.2590
0.6940
-0.0998
0.1469
-0.0707
-0.2872
0.4859
-0.1118
0.3040
-0.1385
-0.0314
0.3761
-0.0458
0.2778
refined
-24.3749
37.1846
8.0661
X-RAY DIFFRACTION
4.7905
3.4479
-6.7436
5.8484
-4.4958
9.7272
-0.1233
0.1296
0.4030
-0.0603
0.1328
-0.5156
0.4578
0.6232
-0.1341
0.1910
-0.0395
-0.0255
0.4485
-0.0156
0.2529
refined
-24.4099
34.5831
-1.0255
X-RAY DIFFRACTION
4.1356
-0.4252
3.6713
0.9344
-0.2734
3.2823
-0.1764
0.4948
0.0582
-0.1068
0.0992
-0.1668
-0.1991
0.6904
0.0627
0.2173
-0.0438
0.0331
0.3414
-0.0334
0.2388
refined
-27.2223
27.5370
-4.7203
X-RAY DIFFRACTION
2.2404
-0.3798
1.2673
1.2430
-0.5969
3.7029
0.0294
0.0007
0.1040
0.0677
-0.0142
-0.0958
-0.0011
0.1297
0.0130
0.1472
-0.0252
-0.0032
0.1785
-0.0145
0.1898
refined
-34.1677
26.5683
4.1699
X-RAY DIFFRACTION
2.2968
0.3477
-0.5783
1.5122
0.0362
2.9120
0.0403
0.1928
0.1430
-0.1266
0.0475
-0.0951
-0.2954
0.4442
-0.0491
0.1556
-0.0428
0.0112
0.1996
-0.0057
0.1832
refined
-33.0186
32.0771
-4.3328
X-RAY DIFFRACTION
7.9408
5.1115
0.3623
3.4815
0.3732
3.2931
0.4825
-0.7007
-0.1189
0.7984
-0.4072
0.4624
0.4454
-0.5371
-0.0134
0.3653
-0.0317
0.0400
0.2715
0.0928
0.3767
refined
-50.0048
6.4493
17.2032
X-RAY DIFFRACTION
A
2
A
9
X-RAY DIFFRACTION
1
chain 'A' and (resid 2 through 9 )
A
10
A
29
X-RAY DIFFRACTION
2
chain 'A' and (resid 10 through 29 )
A
30
A
40
X-RAY DIFFRACTION
3
chain 'A' and (resid 30 through 40 )
A
41
A
58
X-RAY DIFFRACTION
4
chain 'A' and (resid 41 through 58 )
A
59
A
97
X-RAY DIFFRACTION
5
chain 'A' and (resid 59 through 97 )
A
98
A
124
X-RAY DIFFRACTION
6
chain 'A' and (resid 98 through 124 )
A
125
A
138
X-RAY DIFFRACTION
7
chain 'A' and (resid 125 through 138 )
author_and_software_defined_assembly
PISA
3
trimeric
gel filtration
13110
-123
16220
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_565
-y,x-y+1,z
crystal symmetry operation
-42.8350000000
74.1923963422
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_455
-x+y-1,-x,z
crystal symmetry operation
-85.6700000000
0.0000000000
0.0000000000
A
N
LYS
8
A
N
LYS
16
A
O
ALA
56
A
O
ALA
64
A
N
LEU
51
A
N
LEU
59
A
O
ILE
99
A
O
ILE
107
A
O
TRP
102
A
O
TRP
110
A
N
VAL
81
A
N
VAL
89
A
N
LEU
31
A
N
LEU
39
A
O
LEU
120
A
O
LEU
128
A
O
GLN
119
A
O
GLN
127
A
N
LEU
69
A
N
LEU
77
A
N
ALA
66
A
N
ALA
74
A
O
ILE
89
A
O
ILE
97
A
N
MET
41
A
N
MET
49
A
O
VAL
111
A
O
VAL
119
1
A
HOH
427
E
HOH
1
A
MET
-7
A
MET
1
1
Y
1
A
ALA
-6
A
ALA
2
1
Y
1
A
HIS
-5
A
HIS
3
1
Y
1
A
HIS
-4
A
HIS
4
1
Y
1
A
HIS
-3
A
HIS
5
1
Y
1
A
HIS
-2
A
HIS
6
1
Y
1
A
HIS
-1
A
HIS
7
1
Y
1
A
HIS
0
A
HIS
8
1
Y
1
A
MET
1
A
MET
9
1
Y
1
A
SER
139
A
SER
147
1
Y
1
A
SER
140
A
SER
148
1
Y
1
A
ARG
141
A
ARG
149
1
Y
1
A
GLY
142
A
GLY
150
1
Y
1
A
GLU
143
A
GLU
151
1
Y
1
A
GLY
144
A
GLY
152
1
Y
1
A
GLY
145
A
GLY
153
1
Y
1
A
PHE
146
A
PHE
154
1
Y
1
A
GLY
147
A
GLY
155
1
Y
1
A
SER
148
A
SER
156
1
Y
1
A
SER
149
A
SER
157
1
Y
1
A
GLY
150
A
GLY
158
1
Y
1
A
ARG
151
A
ARG
159
1
Y
1
A
TYR
152
A
TYR
160
1
Y
1
A
ASP
16
-105.22
-79.56
1
A
CYS
36
-113.15
75.14
1
A
GLN
46
72.24
-1.58
1
A
ALA
60
73.97
-45.10
1
A
VAL
81
-133.11
-154.82
1
A
LEU
85
72.71
-56.95
107.860
34.5277
14.220
0.1811
0.1482
0.1515
1.9500
37.0960
1774
17031
10.4200
99.9700
0.1800
1
THROUGHOUT
1.350
MOLECULAR REPLACEMENT
17.4300
0.9000
1.1100
apo structure, 6MAI
1.9500
37.0960
138
1215
62.52
45.37
33
0
1044
137
0.009
1126
0.933
1547
13.830
689
0.074
184
0.006
205
0.2521
0.0000
0.2104
2.0028
136
1179
1315
13
100.0000
0.2277
0.0000
0.1801
2.0617
129
1156
1285
13
100.0000
0.2021
0.0000
0.1780
2.1282
146
1158
1304
13
100.0000
0.1852
0.0000
0.1628
2.2043
154
1148
1302
13
100.0000
0.1879
0.0000
0.1568
2.2925
120
1171
1291
13
100.0000
0.2036
0.0000
0.1615
2.3968
128
1180
1308
13
100.0000
0.2252
0.0000
0.1614
2.5232
159
1151
1310
13
100.0000
0.1961
0.0000
0.1537
2.6812
133
1177
1310
13
100.0000
0.1870
0.0000
0.1632
2.8882
119
1171
1290
13
100.0000
0.2062
0.0000
0.1640
3.1787
123
1201
1324
13
100.0000
0.1871
0.0000
0.1394
3.6383
126
1180
1306
13
100.0000
0.1438
0.0000
0.1160
4.5825
150
1175
1325
13
100.0000
0.1555
0.0000
0.1365
37.1029
151
1210
1361
13
100.0000
34.444
1.950
37.096
6MAO
17033
0.999
0.059
0.063
1.044
1
22.980
9.282
100.000
0.470
1.950
2.000
3.040
1265
0.878
0.523
1
5.220
99.900
0.359
2.000
2.060
4.600
1205
0.944
0.392
1
6.216
100.000
0.302
2.060
2.120
6.120
1176
0.957
0.327
1
6.939
100.000
0.288
2.120
2.180
7.050
1154
0.969
0.309
1
7.659
100.000
0.227
2.180
2.250
9.190
1129
0.983
0.242
1
8.167
100.000
0.205
2.250
2.330
10.340
1074
0.989
0.218
1
8.723
100.000
0.174
2.330
2.420
12.840
1037
0.992
0.184
1
9.562
100.000
0.142
2.420
2.520
16.640
1019
0.996
0.149
1
10.834
100.000
0.120
2.520
2.630
19.410
961
0.996
0.126
1
11.046
100.000
0.099
2.630
2.760
22.620
937
0.998
0.103
1
11.076
100.000
0.086
2.760
2.910
25.470
879
0.998
0.090
1
11.051
99.900
0.071
2.910
3.080
30.710
821
0.998
0.075
1
11.060
100.000
0.057
3.080
3.300
37.900
795
0.999
0.060
1
11.067
100.000
0.048
3.300
3.560
46.060
717
0.999
0.050
1
10.980
100.000
0.042
3.560
3.900
51.500
686
0.999
0.044
1
10.784
100.000
0.037
3.900
4.360
56.600
603
0.999
0.039
1
10.877
100.000
0.031
4.360
5.030
61.240
548
0.998
0.033
1
10.828
100.000
0.031
5.030
6.170
60.030
462
0.999
0.033
1
10.972
99.800
0.031
6.170
8.720
56.620
360
0.999
0.032
1
10.936
100.000
0.024
8.720
37.096
64.570
205
1.000
0.025
1
10.298
98.600
data reduction
XDS
data scaling
XSCALE
refinement
PHENIX
(1.14_3211)
data extraction
PDB_EXTRACT
3.24
phasing
PHASER
model building
Coot
N
Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 in complex with dUMP (Deoxyuridine 5'-monophosphate)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
ARG
71
A
ARG
79
HELX_P
A
GLY
79
A
GLY
87
1
AA1
9
HYDROLASE
SSGCID, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, HYDROLASE
DUT_LEGPH
UNP
1
1
Q5ZSN0
MHQVIQLKILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVAPQQTVLLPTGIAIYIADPKLAAVILPRSGLGHKNGI
VLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQASFEVVNEFTESSRGEGGFGSSGRY
1
152
6MAO
1
152
Q5ZSN0
A
1
9
160
1
initiating methionine
MET
-7
6MAO
A
Q5ZSN0
UNP
1
1
expression tag
ALA
-6
6MAO
A
Q5ZSN0
UNP
2
1
expression tag
HIS
-5
6MAO
A
Q5ZSN0
UNP
3
1
expression tag
HIS
-4
6MAO
A
Q5ZSN0
UNP
4
1
expression tag
HIS
-3
6MAO
A
Q5ZSN0
UNP
5
1
expression tag
HIS
-2
6MAO
A
Q5ZSN0
UNP
6
1
expression tag
HIS
-1
6MAO
A
Q5ZSN0
UNP
7
1
expression tag
HIS
0
6MAO
A
Q5ZSN0
UNP
8
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
6
A
GLN
14
A
ILE
9
A
ILE
17
A
THR
48
A
THR
56
A
TYR
58
A
TYR
66
A
GLU
96
A
GLU
104
A
ASN
103
A
ASN
111
A
ILE
80
A
ILE
88
A
LEU
82
A
LEU
90
A
LEU
31
A
LEU
39
A
ARG
34
A
ARG
42
A
ARG
116
A
ARG
124
A
PRO
124
A
PRO
132
A
LEU
64
A
LEU
72
A
PRO
70
A
PRO
78
A
GLY
87
A
GLY
95
A
ILE
89
A
ILE
97
A
MET
41
A
MET
49
A
VAL
43
A
VAL
51
A
PHE
109
A
PHE
117
A
VAL
111
A
VAL
119
binding site for residue UMP A 201
A
UMP
201
Software
14
binding site for residue MPD A 202
A
MPD
202
Software
3
binding site for residue SO4 A 203
A
SO4
203
Software
3
A
SER
72
A
SER
80
14
3_455
A
ASN
84
A
ASN
92
14
1_555
A
GLY
87
A
GLY
95
14
1_555
A
LEU
88
A
LEU
96
14
1_555
A
ILE
89
A
ILE
97
14
1_555
A
ASP
90
A
ASP
98
14
1_555
A
TYR
93
A
TYR
101
14
1_555
A
LYS
98
A
LYS
106
14
1_555
A
MPD
202
C
MPD
14
1_555
A
HOH
301
E
HOH
14
1_555
A
HOH
315
E
HOH
14
1_555
A
HOH
327
E
HOH
14
1_555
A
HOH
352
E
HOH
14
1_555
A
HOH
382
E
HOH
14
1_555
A
SER
72
A
SER
80
3
3_455
A
LYS
77
A
LYS
85
3
3_455
A
UMP
201
B
UMP
3
1_555
A
ARG
34
A
ARG
42
3
1_555
A
ARG
116
A
ARG
124
3
1_555
A
HOH
311
E
HOH
3
1_555
173
P 63