0.018132
0.000000
0.000000
0.000000
0.006856
0.000000
0.000000
0.000000
0.021345
0.000000
0.000000
0.000000
0000-0003-2976-4576
Georgiadis, M.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
55.152
145.849
46.849
C10 H14 N3 O9 P
351.207
(1R)-1-(6-amino-2-hydroxy-5-nitropyridin-3-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol
DNA linking
C10 H16 N5 O7 P 2
349.237
2-amino-8-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-hydroxy-1H-imidazo[1,2-a][1,3,5]triazine-5,8-diium
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C10 H14 N5 O7 P
347.221
n
2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE
DNA linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C10 H16 N3 O7 P
321.224
(1R)-1-(4-amino-1-methyl-2-oxo-1,2-dihydropyrimidin-5-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol
DNA linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
P
Y
3
N
C
Y
4
N
C
N
5
N
O
Y
6
N
N
Y
7
N
C
N
8
N
N
Y
9
N
C
Y
10
N
C
N
11
R
C
N
12
N
C
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
N
C
N
18
N
O
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
O
N
23
N
O
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
Y
40
N
N
Y
41
N
C
N
42
N
N
Y
43
N
N
Y
44
N
C
Y
45
N
N
Y
46
N
C
N
47
N
O
Y
48
N
C
Y
49
N
C
Y
50
N
N
N
51
R
C
N
52
N
C
N
53
S
C
N
54
N
O
N
55
R
C
N
56
N
O
N
57
N
C
N
58
N
O
N
59
N
O
N
60
N
O
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
N
N
98
N
C
N
99
N
N
N
100
N
N
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
R
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
S
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
O
N
165
N
P
N
166
N
O
N
167
N
O
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
O
N
172
S
C
N
173
N
O
N
174
N
C
N
175
R
C
Y
176
N
N
Y
177
N
C
Y
178
N
N
Y
179
N
C
Y
180
N
C
N
181
N
N
Y
182
N
N
Y
183
N
C
Y
184
N
N
Y
185
N
C
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
P
N
202
N
O
N
203
N
O
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
O
N
208
S
C
N
209
N
O
N
210
N
C
N
211
R
C
N
212
N
N
N
213
N
C
N
214
N
O
N
215
N
N
N
216
N
C
N
217
N
N
N
218
N
C
N
219
N
C
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
O
N
235
N
P
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
C
N
240
R
C
N
241
N
O
N
242
S
C
N
243
N
O
N
244
N
C
N
245
R
C
Y
246
N
N
Y
247
N
C
Y
248
N
N
Y
249
N
C
N
250
N
C
N
251
N
O
N
252
N
N
N
253
N
C
N
254
N
N
N
255
N
N
Y
256
N
C
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
O
N
272
N
P
N
273
N
O
N
274
N
O
N
275
N
O
N
276
N
C
N
277
R
C
N
278
N
O
N
279
S
C
N
280
N
O
N
281
N
C
N
282
R
C
N
283
N
N
N
284
N
C
N
285
N
O
N
286
N
N
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
N
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
O
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
N
Y
363
N
C
Y
364
N
C
Y
365
N
N
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
P
N
381
N
O
N
382
N
O
N
383
N
O
N
384
N
O
N
385
N
C
N
386
R
C
N
387
N
O
N
388
S
C
N
389
N
O
N
390
N
C
N
391
R
C
N
392
N
N
N
393
N
C
N
394
N
N
N
395
N
C
N
396
N
N
N
397
N
C
N
398
N
N
N
399
N
C
N
400
N
O
N
401
N
N
N
402
N
C
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
S
C
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
C
N
440
R
C
N
441
N
C
N
442
N
C
N
443
S
C
N
444
N
C
N
445
R
C
N
446
N
C
N
447
N
C
N
448
N
C
N
449
N
N
N
450
N
N
N
451
N
N
N
452
N
O
N
453
N
O
N
454
N
O
N
455
N
O
N
456
N
O
N
457
N
O
N
458
N
P
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
O
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
N
479
N
O
N
480
N
C
N
481
N
C
N
482
N
C
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
N
503
N
C
N
504
N
C
N
505
N
C
N
506
N
N
N
507
N
O
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
N
N
524
S
C
N
525
N
C
N
526
N
O
N
527
N
C
N
528
N
C
N
529
N
S
N
530
N
C
N
531
N
O
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
N
N
544
S
C
N
545
N
C
N
546
N
O
N
547
N
C
Y
548
N
C
Y
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
C
Y
553
N
C
N
554
N
O
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
N
N
567
S
C
N
568
N
C
N
569
N
O
N
570
N
C
N
571
N
C
N
572
N
C
N
573
N
O
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
N
N
584
S
C
N
585
N
C
N
586
N
O
N
587
N
C
N
588
N
O
N
589
N
O
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
597
N
N
N
598
S
C
N
599
N
C
N
600
N
O
N
601
R
C
N
602
N
O
N
603
N
C
N
604
N
O
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
N
N
615
S
C
N
616
N
C
N
617
N
O
N
618
N
C
Y
619
N
C
Y
620
N
C
Y
621
N
C
Y
622
N
N
Y
623
N
C
Y
624
N
C
Y
625
N
C
Y
626
N
C
Y
627
N
C
N
628
N
O
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
N
N
642
S
C
N
643
N
C
N
644
N
O
N
645
N
C
Y
646
N
C
Y
647
N
C
Y
648
N
C
Y
649
N
C
Y
650
N
C
Y
651
N
C
N
652
N
O
N
653
N
O
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
H
N
663
N
H
N
664
N
H
N
665
N
N
N
666
S
C
N
667
N
C
N
668
N
O
N
669
N
C
N
670
N
C
N
671
N
C
N
672
N
O
N
673
N
H
N
674
N
H
N
675
N
H
N
676
N
H
N
677
N
H
N
678
N
H
N
679
N
H
N
680
N
H
N
681
N
H
N
682
N
H
N
683
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
Y
6
N
doub
Y
7
N
sing
N
8
N
sing
Y
9
N
sing
Y
10
N
doub
N
11
N
doub
N
12
N
sing
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
Y
44
N
doub
Y
45
N
sing
N
46
N
sing
Y
47
N
sing
N
48
N
sing
N
49
N
sing
Y
50
N
sing
N
51
N
sing
Y
52
N
sing
Y
53
N
doub
Y
54
N
doub
Y
55
N
sing
N
56
N
sing
Y
57
N
doub
N
58
N
sing
Y
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
sing
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
Y
190
N
sing
Y
191
N
doub
N
192
N
sing
Y
193
N
doub
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
N
198
N
sing
Y
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
Y
258
N
sing
Y
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
sing
N
263
N
sing
Y
264
N
doub
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
doub
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
doub
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
doub
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
Y
553
N
doub
Y
554
N
sing
Y
555
N
sing
N
556
N
sing
Y
557
N
doub
N
558
N
sing
Y
559
N
doub
N
560
N
sing
Y
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
doub
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
doub
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
doub
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
doub
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
Y
622
N
doub
Y
623
N
sing
Y
624
N
sing
N
625
N
sing
Y
626
N
doub
Y
627
N
sing
Y
628
N
sing
N
629
N
sing
Y
630
N
sing
Y
631
N
doub
N
632
N
sing
Y
633
N
doub
N
634
N
sing
Y
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
doub
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
Y
650
N
doub
Y
651
N
sing
Y
652
N
sing
N
653
N
sing
Y
654
N
doub
N
655
N
sing
Y
656
N
doub
N
657
N
sing
Y
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
doub
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
US
Science
SCIEAS
0038
1095-9203
363
884
887
10.1126/science.aat0971
30792304
Hachimoji DNA and RNA: A genetic system with eight building blocks.
2019
10.2210/pdb6mik/pdb
pdb_00006mik
100
1
PIXEL
2018-05-13
DECTRIS EIGER X 16M
SINGLE WAVELENGTH
M
x-ray
1
1.19499
1.0
BL14-1
SSRL
1.19499
SYNCHROTRON
SSRL BEAMLINE BL14-1
29347.754
N-terminal fragment of MMLV reverse transcriptase
3.4.23.-,2.7.7.49,2.7.7.7,3.1.26.4,2.7.7.-,3.1.-.-
1
man
polymer
2435.662
DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(DS))-3')
1
syn
polymer
2523.651
DNA (5'-D(P*(DB)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3')
1
syn
polymer
18.015
water
191
nat
water
Pr180gag-pol
no
no
GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL
PVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA
QICQKQVKYLGYLLKEGQR
GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL
PVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA
QICQKQVKYLGYLLKEGQR
A
polypeptide(L)
no
yes
(DC)(DT)(DT)(DA)(DT)(1WA)(1WA)(JSP)
CTTATXXX
B
polydeoxyribonucleotide
no
yes
(IGU)(1W5)(1W5)(DA)(DT)(DA)(DA)(DG)
GXXATAAG
G
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MoMLV
isolate Shinnick
sample
1
259
gag-pol
928306
Moloney murine leukemia virus (isolate Shinnick)
562
Escherichia coli
Biological sequence
1
2.80
56.08
VAPOR DIFFUSION, HANGING DROP
6.5
8 % PEG 4000, 5 mM magnesium acetate and 50 mM ADA (pH 6.5)
293
-23.785
1
19
B
1
G
16
1.200
B_DC1:DG16_G
1
-8.322
0.213
0.686
-0.086
-15.063
1
20
B
2
G
15
3.779
B_DT2:DA15_G
2
-7.870
-0.249
0.453
0.028
-0.864
1
20
B
3
G
14
6.824
B_DT3:DA14_G
3
-11.597
0.185
-0.084
-0.129
-7.531
1
20
B
4
G
13
3.396
B_DA4:DT13_G
4
-9.351
-0.234
-0.043
-0.076
-0.600
1
20
B
5
G
12
0.144
B_DT5:DA12_G
5
-12.146
-0.049
-0.051
-0.132
2.873
36.306
B
B
1
2
14.219
G
G
16
15
2.994
8.760
0.665
-0.396
BB_DC1DT2:DA15DG16_GG
1
4.140
-6.721
35.031
-1.754
-0.538
2.854
30.933
B
B
2
3
4.449
G
G
15
14
2.910
2.363
-0.008
-0.231
BB_DT2DT3:DA14DA15_GG
2
4.491
-8.457
30.524
-0.839
0.785
3.551
38.310
B
B
3
4
10.651
G
G
14
13
3.451
6.923
-0.651
0.539
BB_DT3DA4:DT13DA14_GG
3
-6.391
9.832
37.176
-0.123
0.121
3.045
31.375
B
B
4
5
3.677
G
G
13
12
3.113
1.987
-0.281
-0.819
BB_DA4DT5:DA12DT13_GG
4
1.148
-2.125
31.293
-1.866
0.723
citation
citation_author
database_PDB_rev
database_PDB_rev_record
pdbx_database_proc
pdbx_seq_map_depositor_info
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Data collection
Database references
Data collection
Database references
Derived calculations
1
0
2019-02-27
1
1
2019-03-06
1
2
2024-03-13
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_pdbx_seq_map_depositor_info.one_letter_code_mod
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
N
RCSB
Y
RCSB
2018-09-19
REL
REL
1
A
O
HOH
482
5.88
HOH
water
32630
synthetic construct
sample
1
8
32630
synthetic construct
sample
1
8
HOH
167
4
HOH
HOH
301
A
HOH
154
4
HOH
HOH
302
A
HOH
168
4
HOH
HOH
303
A
HOH
192
4
HOH
HOH
304
A
HOH
165
4
HOH
HOH
305
A
HOH
188
4
HOH
HOH
306
A
HOH
186
4
HOH
HOH
307
A
HOH
159
4
HOH
HOH
308
A
HOH
176
4
HOH
HOH
309
A
HOH
191
4
HOH
HOH
310
A
HOH
187
4
HOH
HOH
311
A
HOH
4
4
HOH
HOH
312
A
HOH
205
4
HOH
HOH
313
A
HOH
96
4
HOH
HOH
314
A
HOH
86
4
HOH
HOH
315
A
HOH
33
4
HOH
HOH
316
A
HOH
82
4
HOH
HOH
317
A
HOH
153
4
HOH
HOH
318
A
HOH
87
4
HOH
HOH
319
A
HOH
158
4
HOH
HOH
320
A
HOH
68
4
HOH
HOH
321
A
HOH
80
4
HOH
HOH
322
A
HOH
14
4
HOH
HOH
323
A
HOH
57
4
HOH
HOH
324
A
HOH
2
4
HOH
HOH
325
A
HOH
7
4
HOH
HOH
326
A
HOH
181
4
HOH
HOH
327
A
HOH
46
4
HOH
HOH
328
A
HOH
18
4
HOH
HOH
329
A
HOH
17
4
HOH
HOH
330
A
HOH
13
4
HOH
HOH
331
A
HOH
63
4
HOH
HOH
332
A
HOH
163
4
HOH
HOH
333
A
HOH
23
4
HOH
HOH
334
A
HOH
1
4
HOH
HOH
335
A
HOH
160
4
HOH
HOH
336
A
HOH
67
4
HOH
HOH
337
A
HOH
175
4
HOH
HOH
338
A
HOH
196
4
HOH
HOH
339
A
HOH
120
4
HOH
HOH
340
A
HOH
10
4
HOH
HOH
341
A
HOH
76
4
HOH
HOH
342
A
HOH
20
4
HOH
HOH
343
A
HOH
36
4
HOH
HOH
344
A
HOH
32
4
HOH
HOH
345
A
HOH
190
4
HOH
HOH
346
A
HOH
145
4
HOH
HOH
347
A
HOH
65
4
HOH
HOH
348
A
HOH
173
4
HOH
HOH
349
A
HOH
75
4
HOH
HOH
350
A
HOH
149
4
HOH
HOH
351
A
HOH
3
4
HOH
HOH
352
A
HOH
164
4
HOH
HOH
353
A
HOH
30
4
HOH
HOH
354
A
HOH
189
4
HOH
HOH
355
A
HOH
182
4
HOH
HOH
356
A
HOH
73
4
HOH
HOH
357
A
HOH
48
4
HOH
HOH
358
A
HOH
183
4
HOH
HOH
359
A
HOH
85
4
HOH
HOH
360
A
HOH
11
4
HOH
HOH
361
A
HOH
119
4
HOH
HOH
362
A
HOH
5
4
HOH
HOH
363
A
HOH
25
4
HOH
HOH
364
A
HOH
28
4
HOH
HOH
365
A
HOH
71
4
HOH
HOH
366
A
HOH
195
4
HOH
HOH
367
A
HOH
40
4
HOH
HOH
368
A
HOH
35
4
HOH
HOH
369
A
HOH
105
4
HOH
HOH
370
A
HOH
47
4
HOH
HOH
371
A
HOH
198
4
HOH
HOH
372
A
HOH
12
4
HOH
HOH
373
A
HOH
70
4
HOH
HOH
374
A
HOH
52
4
HOH
HOH
375
A
HOH
122
4
HOH
HOH
376
A
HOH
144
4
HOH
HOH
377
A
HOH
97
4
HOH
HOH
378
A
HOH
94
4
HOH
HOH
379
A
HOH
19
4
HOH
HOH
380
A
HOH
133
4
HOH
HOH
381
A
HOH
50
4
HOH
HOH
382
A
HOH
37
4
HOH
HOH
383
A
HOH
128
4
HOH
HOH
384
A
HOH
59
4
HOH
HOH
385
A
HOH
132
4
HOH
HOH
386
A
HOH
89
4
HOH
HOH
387
A
HOH
62
4
HOH
HOH
388
A
HOH
93
4
HOH
HOH
389
A
HOH
77
4
HOH
HOH
390
A
HOH
109
4
HOH
HOH
391
A
HOH
55
4
HOH
HOH
392
A
HOH
98
4
HOH
HOH
393
A
HOH
170
4
HOH
HOH
394
A
HOH
38
4
HOH
HOH
395
A
HOH
51
4
HOH
HOH
396
A
HOH
104
4
HOH
HOH
397
A
HOH
21
4
HOH
HOH
398
A
HOH
27
4
HOH
HOH
399
A
HOH
26
4
HOH
HOH
400
A
HOH
114
4
HOH
HOH
401
A
HOH
15
4
HOH
HOH
402
A
HOH
113
4
HOH
HOH
403
A
HOH
44
4
HOH
HOH
404
A
HOH
56
4
HOH
HOH
405
A
HOH
8
4
HOH
HOH
406
A
HOH
103
4
HOH
HOH
407
A
HOH
180
4
HOH
HOH
408
A
HOH
111
4
HOH
HOH
409
A
HOH
193
4
HOH
HOH
410
A
HOH
79
4
HOH
HOH
411
A
HOH
83
4
HOH
HOH
412
A
HOH
156
4
HOH
HOH
413
A
HOH
22
4
HOH
HOH
414
A
HOH
100
4
HOH
HOH
415
A
HOH
31
4
HOH
HOH
416
A
HOH
49
4
HOH
HOH
417
A
HOH
16
4
HOH
HOH
418
A
HOH
124
4
HOH
HOH
419
A
HOH
123
4
HOH
HOH
420
A
HOH
6
4
HOH
HOH
421
A
HOH
125
4
HOH
HOH
422
A
HOH
60
4
HOH
HOH
423
A
HOH
58
4
HOH
HOH
424
A
HOH
29
4
HOH
HOH
425
A
HOH
72
4
HOH
HOH
426
A
HOH
118
4
HOH
HOH
427
A
HOH
45
4
HOH
HOH
428
A
HOH
78
4
HOH
HOH
429
A
HOH
9
4
HOH
HOH
430
A
HOH
143
4
HOH
HOH
431
A
HOH
152
4
HOH
HOH
432
A
HOH
130
4
HOH
HOH
433
A
HOH
207
4
HOH
HOH
434
A
HOH
148
4
HOH
HOH
435
A
HOH
108
4
HOH
HOH
436
A
HOH
147
4
HOH
HOH
437
A
HOH
202
4
HOH
HOH
438
A
HOH
90
4
HOH
HOH
439
A
HOH
174
4
HOH
HOH
440
A
HOH
185
4
HOH
HOH
441
A
HOH
92
4
HOH
HOH
442
A
HOH
34
4
HOH
HOH
443
A
HOH
91
4
HOH
HOH
444
A
HOH
141
4
HOH
HOH
445
A
HOH
81
4
HOH
HOH
446
A
HOH
69
4
HOH
HOH
447
A
HOH
184
4
HOH
HOH
448
A
HOH
179
4
HOH
HOH
449
A
HOH
121
4
HOH
HOH
450
A
HOH
150
4
HOH
HOH
451
A
HOH
200
4
HOH
HOH
452
A
HOH
169
4
HOH
HOH
453
A
HOH
66
4
HOH
HOH
454
A
HOH
194
4
HOH
HOH
455
A
HOH
84
4
HOH
HOH
456
A
HOH
135
4
HOH
HOH
457
A
HOH
129
4
HOH
HOH
458
A
HOH
64
4
HOH
HOH
459
A
HOH
53
4
HOH
HOH
460
A
HOH
24
4
HOH
HOH
461
A
HOH
197
4
HOH
HOH
462
A
HOH
54
4
HOH
HOH
463
A
HOH
43
4
HOH
HOH
464
A
HOH
126
4
HOH
HOH
465
A
HOH
41
4
HOH
HOH
466
A
HOH
74
4
HOH
HOH
467
A
HOH
142
4
HOH
HOH
468
A
HOH
178
4
HOH
HOH
469
A
HOH
155
4
HOH
HOH
470
A
HOH
140
4
HOH
HOH
471
A
HOH
172
4
HOH
HOH
472
A
HOH
42
4
HOH
HOH
473
A
HOH
138
4
HOH
HOH
474
A
HOH
157
4
HOH
HOH
475
A
HOH
177
4
HOH
HOH
476
A
HOH
146
4
HOH
HOH
477
A
HOH
139
4
HOH
HOH
478
A
HOH
151
4
HOH
HOH
479
A
HOH
39
4
HOH
HOH
480
A
HOH
95
4
HOH
HOH
481
A
HOH
199
4
HOH
HOH
482
A
HOH
162
4
HOH
HOH
101
B
HOH
102
4
HOH
HOH
102
B
HOH
112
4
HOH
HOH
103
B
HOH
161
4
HOH
HOH
104
B
HOH
117
4
HOH
HOH
101
G
HOH
206
4
HOH
HOH
102
G
HOH
134
4
HOH
HOH
103
G
HOH
116
4
HOH
HOH
104
G
HOH
115
4
HOH
HOH
105
G
n
1
20
A
n
2
21
A
n
3
22
A
n
4
23
A
THR
24
n
5
THR
24
A
TRP
25
n
6
TRP
25
A
LEU
26
n
7
LEU
26
A
SER
27
n
8
SER
27
A
ASP
28
n
9
ASP
28
A
PHE
29
n
10
PHE
29
A
PRO
30
n
11
PRO
30
A
GLN
31
n
12
GLN
31
A
ALA
32
n
13
ALA
32
A
TRP
33
n
14
TRP
33
A
ALA
34
n
15
ALA
34
A
GLU
35
n
16
GLU
35
A
THR
36
n
17
THR
36
A
GLY
37
n
18
GLY
37
A
GLY
38
n
19
GLY
38
A
MET
39
n
20
MET
39
A
GLY
40
n
21
GLY
40
A
LEU
41
n
22
LEU
41
A
ALA
42
n
23
ALA
42
A
VAL
43
n
24
VAL
43
A
ARG
44
n
25
ARG
44
A
GLN
45
n
26
GLN
45
A
ALA
46
n
27
ALA
46
A
PRO
47
n
28
PRO
47
A
LEU
48
n
29
LEU
48
A
ILE
49
n
30
ILE
49
A
ILE
50
n
31
ILE
50
A
PRO
51
n
32
PRO
51
A
LEU
52
n
33
LEU
52
A
LYS
53
n
34
LYS
53
A
ALA
54
n
35
ALA
54
A
THR
55
n
36
THR
55
A
SER
56
n
37
SER
56
A
THR
57
n
38
THR
57
A
PRO
58
n
39
PRO
58
A
VAL
59
n
40
VAL
59
A
SER
60
n
41
SER
60
A
ILE
61
n
42
ILE
61
A
LYS
62
n
43
LYS
62
A
GLN
63
n
44
GLN
63
A
TYR
64
n
45
TYR
64
A
PRO
65
n
46
PRO
65
A
MET
66
n
47
MET
66
A
SER
67
n
48
SER
67
A
GLN
68
n
49
GLN
68
A
GLU
69
n
50
GLU
69
A
ALA
70
n
51
ALA
70
A
ARG
71
n
52
ARG
71
A
LEU
72
n
53
LEU
72
A
GLY
73
n
54
GLY
73
A
ILE
74
n
55
ILE
74
A
LYS
75
n
56
LYS
75
A
PRO
76
n
57
PRO
76
A
HIS
77
n
58
HIS
77
A
ILE
78
n
59
ILE
78
A
GLN
79
n
60
GLN
79
A
ARG
80
n
61
ARG
80
A
LEU
81
n
62
LEU
81
A
LEU
82
n
63
LEU
82
A
ASP
83
n
64
ASP
83
A
GLN
84
n
65
GLN
84
A
GLY
85
n
66
GLY
85
A
ILE
86
n
67
ILE
86
A
LEU
87
n
68
LEU
87
A
VAL
88
n
69
VAL
88
A
PRO
89
n
70
PRO
89
A
CYS
90
n
71
CYS
90
A
GLN
91
n
72
GLN
91
A
SER
92
n
73
SER
92
A
PRO
93
n
74
PRO
93
A
TRP
94
n
75
TRP
94
A
ASN
95
n
76
ASN
95
A
THR
96
n
77
THR
96
A
PRO
97
n
78
PRO
97
A
LEU
98
n
79
LEU
98
A
LEU
99
n
80
LEU
99
A
PRO
100
n
81
PRO
100
A
VAL
101
n
82
VAL
101
A
n
83
102
A
n
84
103
A
n
85
104
A
n
86
105
A
n
87
106
A
n
88
107
A
n
89
108
A
TYR
109
n
90
TYR
109
A
ARG
110
n
91
ARG
110
A
PRO
111
n
92
PRO
111
A
VAL
112
n
93
VAL
112
A
GLN
113
n
94
GLN
113
A
ASP
114
n
95
ASP
114
A
LEU
115
n
96
LEU
115
A
ARG
116
n
97
ARG
116
A
GLU
117
n
98
GLU
117
A
VAL
118
n
99
VAL
118
A
ASN
119
n
100
ASN
119
A
LYS
120
n
101
LYS
120
A
ARG
121
n
102
ARG
121
A
VAL
122
n
103
VAL
122
A
GLU
123
n
104
GLU
123
A
ASP
124
n
105
ASP
124
A
ILE
125
n
106
ILE
125
A
HIS
126
n
107
HIS
126
A
PRO
127
n
108
PRO
127
A
THR
128
n
109
THR
128
A
VAL
129
n
110
VAL
129
A
PRO
130
n
111
PRO
130
A
ASN
131
n
112
ASN
131
A
PRO
132
n
113
PRO
132
A
TYR
133
n
114
TYR
133
A
ASN
134
n
115
ASN
134
A
LEU
135
n
116
LEU
135
A
LEU
136
n
117
LEU
136
A
SER
137
n
118
SER
137
A
GLY
138
n
119
GLY
138
A
LEU
139
n
120
LEU
139
A
PRO
140
n
121
PRO
140
A
PRO
141
n
122
PRO
141
A
SER
142
n
123
SER
142
A
HIS
143
n
124
HIS
143
A
GLN
144
n
125
GLN
144
A
TRP
145
n
126
TRP
145
A
TYR
146
n
127
TYR
146
A
THR
147
n
128
THR
147
A
VAL
148
n
129
VAL
148
A
LEU
149
n
130
LEU
149
A
ASP
150
n
131
ASP
150
A
LEU
151
n
132
LEU
151
A
LYS
152
n
133
LYS
152
A
ASP
153
n
134
ASP
153
A
ALA
154
n
135
ALA
154
A
PHE
155
n
136
PHE
155
A
PHE
156
n
137
PHE
156
A
CYS
157
n
138
CYS
157
A
LEU
158
n
139
LEU
158
A
ARG
159
n
140
ARG
159
A
LEU
160
n
141
LEU
160
A
HIS
161
n
142
HIS
161
A
PRO
162
n
143
PRO
162
A
THR
163
n
144
THR
163
A
SER
164
n
145
SER
164
A
GLN
165
n
146
GLN
165
A
PRO
166
n
147
PRO
166
A
LEU
167
n
148
LEU
167
A
PHE
168
n
149
PHE
168
A
ALA
169
n
150
ALA
169
A
PHE
170
n
151
PHE
170
A
GLU
171
n
152
GLU
171
A
TRP
172
n
153
TRP
172
A
ARG
173
n
154
ARG
173
A
ASP
174
n
155
ASP
174
A
PRO
175
n
156
PRO
175
A
GLU
176
n
157
GLU
176
A
MET
177
n
158
MET
177
A
GLY
178
n
159
GLY
178
A
ILE
179
n
160
ILE
179
A
SER
180
n
161
SER
180
A
GLY
181
n
162
GLY
181
A
GLN
182
n
163
GLN
182
A
LEU
183
n
164
LEU
183
A
THR
184
n
165
THR
184
A
TRP
185
n
166
TRP
185
A
THR
186
n
167
THR
186
A
ARG
187
n
168
ARG
187
A
LEU
188
n
169
LEU
188
A
PRO
189
n
170
PRO
189
A
GLN
190
n
171
GLN
190
A
GLY
191
n
172
GLY
191
A
PHE
192
n
173
PHE
192
A
LYS
193
n
174
LYS
193
A
ASN
194
n
175
ASN
194
A
SER
195
n
176
SER
195
A
PRO
196
n
177
PRO
196
A
THR
197
n
178
THR
197
A
LEU
198
n
179
LEU
198
A
PHE
199
n
180
PHE
199
A
ASP
200
n
181
ASP
200
A
GLU
201
n
182
GLU
201
A
ALA
202
n
183
ALA
202
A
LEU
203
n
184
LEU
203
A
HIS
204
n
185
HIS
204
A
ARG
205
n
186
ARG
205
A
ASP
206
n
187
ASP
206
A
LEU
207
n
188
LEU
207
A
ALA
208
n
189
ALA
208
A
ASP
209
n
190
ASP
209
A
PHE
210
n
191
PHE
210
A
ARG
211
n
192
ARG
211
A
ILE
212
n
193
ILE
212
A
GLN
213
n
194
GLN
213
A
HIS
214
n
195
HIS
214
A
PRO
215
n
196
PRO
215
A
ASP
216
n
197
ASP
216
A
LEU
217
n
198
LEU
217
A
ILE
218
n
199
ILE
218
A
LEU
219
n
200
LEU
219
A
LEU
220
n
201
LEU
220
A
GLN
221
n
202
GLN
221
A
TYR
222
n
203
TYR
222
A
VAL
223
n
204
VAL
223
A
ASP
224
n
205
ASP
224
A
ASP
225
n
206
ASP
225
A
LEU
226
n
207
LEU
226
A
LEU
227
n
208
LEU
227
A
LEU
228
n
209
LEU
228
A
ALA
229
n
210
ALA
229
A
ALA
230
n
211
ALA
230
A
THR
231
n
212
THR
231
A
SER
232
n
213
SER
232
A
GLU
233
n
214
GLU
233
A
LEU
234
n
215
LEU
234
A
ASP
235
n
216
ASP
235
A
CYS
236
n
217
CYS
236
A
GLN
237
n
218
GLN
237
A
GLN
238
n
219
GLN
238
A
GLY
239
n
220
GLY
239
A
THR
240
n
221
THR
240
A
ARG
241
n
222
ARG
241
A
ALA
242
n
223
ALA
242
A
LEU
243
n
224
LEU
243
A
LEU
244
n
225
LEU
244
A
GLN
245
n
226
GLN
245
A
THR
246
n
227
THR
246
A
LEU
247
n
228
LEU
247
A
GLY
248
n
229
GLY
248
A
ASN
249
n
230
ASN
249
A
LEU
250
n
231
LEU
250
A
GLY
251
n
232
GLY
251
A
TYR
252
n
233
TYR
252
A
ARG
253
n
234
ARG
253
A
ALA
254
n
235
ALA
254
A
SER
255
n
236
SER
255
A
ALA
256
n
237
ALA
256
A
LYS
257
n
238
LYS
257
A
LYS
258
n
239
LYS
258
A
ALA
259
n
240
ALA
259
A
GLN
260
n
241
GLN
260
A
ILE
261
n
242
ILE
261
A
CYS
262
n
243
CYS
262
A
GLN
263
n
244
GLN
263
A
LYS
264
n
245
LYS
264
A
GLN
265
n
246
GLN
265
A
VAL
266
n
247
VAL
266
A
LYS
267
n
248
LYS
267
A
TYR
268
n
249
TYR
268
A
LEU
269
n
250
LEU
269
A
GLY
270
n
251
GLY
270
A
TYR
271
n
252
TYR
271
A
LEU
272
n
253
LEU
272
A
LEU
273
n
254
LEU
273
A
LYS
274
n
255
LYS
274
A
GLU
275
n
256
GLU
275
A
GLY
276
n
257
GLY
276
A
GLN
277
n
258
GLN
277
A
ARG
278
n
259
ARG
278
A
DC
1
n
1
DC
1
B
DT
2
n
2
DT
2
B
DT
3
n
3
DT
3
B
DA
4
n
4
DA
4
B
DT
5
n
5
DT
5
B
1WA
6
n
6
1WA
6
B
1WA
7
n
7
1WA
7
B
DS
8
n
8
JSP
8
B
DB
9
n
1
IGU
9
G
1W5
10
n
2
1W5
10
G
1W5
11
n
3
1W5
11
G
DA
12
n
4
DA
12
G
DT
13
n
5
DT
13
G
DA
14
n
6
DA
14
G
DA
15
n
7
DA
15
G
DG
16
n
8
DG
16
G
author_defined_assembly
3
trimeric
none
1870
5
15060
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
88
A
N
VAL
69
A
O
THR
184
A
O
THR
165
A
O
GLY
181
A
O
GLY
162
A
N
TRP
172
A
N
TRP
153
A
N
LEU
99
A
N
LEU
80
A
O
VAL
112
A
O
VAL
93
A
N
ILE
218
A
N
ILE
199
A
O
ALA
229
A
O
ALA
210
A
O
LEU
228
A
O
LEU
209
A
N
THR
147
A
N
THR
128
A
N
TYR
146
A
N
TYR
127
A
O
GLN
263
A
O
GLN
244
A
N
VAL
266
A
N
VAL
247
A
O
LEU
273
A
O
LEU
254
1
A
GLY
20
A
GLY
1
1
Y
1
A
SER
21
A
SER
2
1
Y
1
A
HIS
22
A
HIS
3
1
Y
1
A
MET
23
A
MET
4
1
Y
1
A
LYS
102
A
LYS
83
1
Y
1
A
LYS
103
A
LYS
84
1
Y
1
A
PRO
104
A
PRO
85
1
Y
1
A
GLY
105
A
GLY
86
1
Y
1
A
THR
106
A
THR
87
1
Y
1
A
ASN
107
A
ASN
88
1
Y
1
A
ASP
108
A
ASP
89
1
Y
1
A
LEU
41
-169.38
115.43
1
A
VAL
223
52.42
-107.80
104.320
35.4984
14.520
0.2468
0.2134
0.2150
1.7000
39.4160
2013
42253
4.7600
99.4400
0.1900
1
THROUGHOUT
1.340
MOLECULAR REPLACEMENT
23.5100
0.9000
1.1100
1.7000
39.4160
191
2512
32.30
0
332
1989
264
0.007
2451
0.966
3412
0.063
373
0.007
386
10.380
1875
0.2733
0.0000
0.2875
1.7428
143
2799
2942
14
99.0000
0.2793
0.0000
0.2502
1.7899
141
2859
3000
14
100.0000
0.3039
0.0000
0.2413
1.8426
124
2859
2983
14
100.0000
0.2695
0.0000
0.2410
1.9020
161
2815
2976
14
99.0000
0.2684
0.0000
0.2313
1.9700
128
2842
2970
14
99.0000
0.2576
0.0000
0.2233
2.0489
156
2828
2984
14
99.0000
0.2762
0.0000
0.2161
2.1421
123
2879
3002
14
100.0000
0.2681
0.0000
0.2134
2.2551
130
2859
2989
14
100.0000
0.2130
0.0000
0.2143
2.3963
145
2879
3024
14
100.0000
0.2596
0.0000
0.2144
2.5813
149
2853
3002
14
100.0000
0.2544
0.0000
0.2306
2.8410
154
2873
3027
14
99.0000
0.2661
0.0000
0.2228
3.2520
135
2936
3071
14
100.0000
0.2332
0.0000
0.2028
4.0964
173
2839
3012
14
98.0000
0.2234
0.0000
0.1902
39.4266
151
3120
3271
14
100.0000
24.620
1.700
39.420
6MIK
42311
0.992
0.095
0.050
0.108
1
8.000
189052
4.500
14
99.500
0.836
1.700
1.730
2219
0.666
0.436
0.946
1
4.400
99.300
0.070
9.000
39.420
350
0.989
0.042
0.082
1
3.800
99.000
refinement
PHENIX
1.11.1_2575
data scaling
Aimless
data extraction
PDB_EXTRACT
3.24
data reduction
XDS
phasing
PHASER
N
Crystal structure of host-guest complex with PP hachimoji DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
THR
24
A
THR
5
HELX_P
A
PHE
29
A
PHE
10
1
AA1
6
A
TRP
33
A
TRP
14
HELX_P
A
GLY
38
A
GLY
19
1
AA2
6
A
SER
67
A
SER
48
HELX_P
A
GLN
84
A
GLN
65
1
AA3
18
A
LEU
115
A
LEU
96
HELX_P
A
LYS
120
A
LYS
101
1
AA4
6
A
ASN
131
A
ASN
112
HELX_P
A
GLY
138
A
GLY
119
1
AA5
8
A
ALA
154
A
ALA
135
HELX_P
A
LEU
158
A
LEU
139
5
AA6
5
A
SER
164
A
SER
145
HELX_P
A
ALA
169
A
ALA
150
5
AA7
6
A
ASN
194
A
ASN
175
HELX_P
A
HIS
214
A
HIS
195
1
AA8
21
A
SER
232
A
SER
213
HELX_P
A
GLY
251
A
GLY
232
1
AA9
20
covale
1.587
both
B
DT
5
B
O3'
DT
5
1_555
B
1WA
6
B
P
1WA
6
1_555
covale
1.590
both
B
1WA
6
B
O3'
1WA
6
1_555
B
1WA
7
B
P
1WA
7
1_555
covale
1.586
both
B
1WA
7
B
O3'
1WA
7
1_555
B
JSP
8
B
P
JSP
8
1_555
covale
1.590
one
B
JSP
8
B
O3'
JSP
8
1_555
G
IGU
9
C
P
IGU
1
2_655
covale
1.588
both
G
IGU
9
C
O3'
IGU
1
1_555
G
1W5
10
C
P
1W5
2
1_555
covale
1.585
one
G
1W5
10
C
O3'
1W5
2
1_555
G
1W5
11
C
P
1W5
3
1_555
covale
1.587
one
G
1W5
11
C
O3'
1W5
3
1_555
G
DA
12
C
P
DA
4
1_555
hydrog
WATSON-CRICK
B
DC
1
B
N3
DC
1
1_555
G
DG
16
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
1
B
N4
DC
1
1_555
G
DG
16
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
1
B
O2
DC
1
1_555
G
DG
16
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DT
2
B
N3
DT
2
1_555
G
DA
15
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
2
B
O4
DT
2
1_555
G
DA
15
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
3
B
N3
DT
3
1_555
G
DA
14
C
N1
DA
6
1_555
hydrog
WATSON-CRICK
B
DT
3
B
O4
DT
3
1_555
G
DA
14
C
N6
DA
6
1_555
hydrog
WATSON-CRICK
B
DA
4
B
N1
DA
4
1_555
G
DT
13
C
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
4
B
N6
DA
4
1_555
G
DT
13
C
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DT
5
B
N3
DT
5
1_555
G
DA
12
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
5
B
O4
DT
5
1_555
G
DA
12
C
N6
DA
4
1_555
HYDROLASE/DNA
Host-guest complex, hachimoji DNA, N-terminal fragment of MMLV RT, DNA, HYDROLASE-DNA complex
POL_MLVMS
UNP
1
683
P03355
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
6MIK
PDB
2
1
6MIK
6MIK
PDB
3
1
6MIK
683
937
6MIK
24
278
P03355
A
1
5
259
1
8
6MIK
1
8
6MIK
B
2
1
8
9
16
6MIK
9
16
6MIK
G
3
1
8
1
expression tag
GLY
20
6MIK
A
P03355
UNP
1
1
expression tag
SER
21
6MIK
A
P03355
UNP
2
1
expression tag
HIS
22
6MIK
A
P03355
UNP
3
1
expression tag
MET
23
6MIK
A
P03355
UNP
4
3
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
87
A
LEU
68
A
CYS
90
A
CYS
71
A
SER
180
A
SER
161
A
TRP
185
A
TRP
166
A
PHE
170
A
PHE
151
A
ARG
173
A
ARG
154
A
LEU
98
A
LEU
79
A
PRO
100
A
PRO
81
A
PRO
111
A
PRO
92
A
GLN
113
A
GLN
94
A
ILE
218
A
ILE
199
A
TYR
222
A
TYR
203
A
ASP
225
A
ASP
206
A
ALA
230
A
ALA
211
A
TRP
145
A
TRP
126
A
ASP
150
A
ASP
131
A
GLN
260
A
GLN
241
A
GLN
263
A
GLN
244
A
VAL
266
A
VAL
247
A
TYR
268
A
TYR
249
A
TYR
271
A
TYR
252
A
LEU
273
A
LEU
254
18
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