0.012301 0.000000 0.000000 0.000000 0.011742 0.000000 0.000000 0.000000 0.010815 0.00000 0.00000 0.00000 0000-0002-9596-1036 Price, I.R. 0000-0001-5957-7822 Ke, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 81.296 85.167 92.463 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H16 N5 O14 P3 523.180 n GUANOSINE-5'-TRIPHOSPHATE non-polymer H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Mn 2 54.938 MANGANESE (II) ION non-polymer Na 1 22.990 SODIUM ION non-polymer Sr 2 87.620 STRONTIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N P N 112 N O N 113 N O N 114 N O N 115 N O N 116 N P N 117 N O N 118 N O N 119 N O N 120 N P N 121 N O N 122 N O N 123 N O N 124 N C N 125 R C N 126 N O N 127 S C N 128 N O N 129 R C N 130 N O N 131 R C Y 132 N N Y 133 N C Y 134 N N Y 135 N C N 136 N C N 137 N O N 138 N N N 139 N C N 140 N N N 141 N N Y 142 N C N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N MG N 163 N MN N 164 N NA N 165 N SR N 166 N O N 167 N P N 168 N O N 169 N O N 170 N O N 171 N C N 172 R C N 173 N O N 174 S C N 175 N O N 176 R C N 177 N O N 178 R C N 179 N N N 180 N C N 181 N O N 182 N N N 183 N C N 184 N O N 185 N C N 186 N C N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing Y 150 N sing Y 151 N sing Y 152 N doub N 153 N sing Y 154 N sing N 155 N sing Y 156 N doub N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N doub N 201 N sing N 202 N sing UK Nat Commun 2041-1723 10 4304 4304 10.1038/s41467-019-12230-5 31541094 Local-to-global signal transduction at the core of a Mn2+sensing riboswitch. 2019 0000-0003-1597-2622 0000-0002-9596-1036 0000-0003-4599-2640 0000-0001-6558-6186 0000-0002-7137-8225 0000-0001-5957-7822 0000-0002-7301-1275 10.2210/pdb6n2v/pdb pdb_00006n2v 100 1 N PIXEL 2014-10-16 DECTRIS PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.769 1.0 24-ID-C APS 0.769 SYNCHROTRON APS BEAMLINE 24-ID-C 32281.131 X. oryzae Mn riboswitch optimized construct 2 syn polymer 24.305 MAGNESIUM ION 39 syn non-polymer 54.938 MANGANESE (II) ION 7 syn non-polymer 87.620 STRONTIUM ION 9 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 7 nat water no yes (GTP)GCUUGGGGAGUAGCCUGCUUUCGGAAACGAAAGCGCCUGUAUCAACAUACUCGGCGAAAGCCGUGGUGCAGGACC GAAAGGUCUGGCGAGACCAGGCC GGCUUGGGGAGUAGCCUGCUUUCGGAAACGAAAGCGCCUGUAUCAACAUACUCGGCGAAAGCCGUGGUGCAGGACCGAAA GGUCUGGCGAGACCAGGCC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.48 50.38 VAPOR DIFFUSION, HANGING DROP 0.2 mM RNA in 10 mM Na Cacodylate pH 7, 50 mM NaCl, 10 mM MgCl2, mixed in a 1:1 ratio with 10% MPD, 40 mM Na Cacodylate pH 7, 12 mM spermine tetrahydrochloride, 80 mM SrCl2, 20 mM MgCl2. 291 0.725 1 19 A 1 A 99 -5.945 A_GTP1:C99_A 1 8.721 0.129 0.499 -0.554 9.643 1 19 A 2 A 98 8.241 A_G2:C98_A 2 -7.712 -0.863 0.246 0.152 6.579 1 19 A 3 A 97 -3.332 A_C3:G97_A 3 -13.865 0.395 0.057 -0.154 -3.081 1 28 A 4 A 96 -1.248 A_U4:G96_A 4 -13.597 2.459 0.134 -0.519 1.296 1 20 A 5 A 95 5.977 A_U5:A95_A 5 -7.474 -0.453 0.128 -0.047 5.967 1 19 A 6 A 94 -0.291 A_G6:C94_A 6 -5.103 0.043 -0.179 -0.131 -19.827 1 19 A 7 A 93 7.281 A_G7:C93_A 7 -20.423 -0.017 -1.002 -0.169 -23.319 10 11 A 8 A 92 0.360 A_G8:A92_A 8 -10.378 7.126 0.102 -4.006 4.119 4 7 A 9 A 91 -111.150 A_G9:G91_A 9 -13.631 5.377 -0.219 0.127 2.008 4 24 A 12 A 90 -104.485 A_U12:A90_A 10 -14.734 4.674 -0.518 -1.872 -1.729 9 11 A 13 A 89 -1.812 A_A13:G89_A 11 5.762 -6.975 0.024 -4.003 9.082 1 19 A 14 A 88 1.477 A_G14:C88_A 12 1.034 -0.363 0.231 -0.116 14.657 1 19 A 15 A 87 0.944 A_C15:G87_A 13 -5.698 0.103 -0.465 -0.078 3.511 1 19 A 16 A 86 4.260 A_C16:G86_A 14 -3.357 0.209 -0.520 -0.147 16.780 1 16 A 17 A 85 13.511 A_U17:U85_A 15 -5.811 2.338 0.032 -1.710 2.540 1 19 A 18 A 35 3.248 A_G18:C35_A 16 -14.738 -0.598 0.119 0.150 8.791 1 19 A 19 A 34 13.461 A_C19:G34_A 17 -17.412 -0.516 0.320 0.220 5.859 1 20 A 20 A 33 9.352 A_U20:A33_A 18 -8.275 -1.022 -0.111 0.071 4.430 1 20 A 21 A 32 -4.770 A_U21:A32_A 19 -12.452 0.378 -0.695 -0.178 -2.360 1 20 A 22 A 31 -3.507 A_U22:A31_A 20 -10.607 0.132 0.035 -0.018 5.678 1 19 A 23 A 30 -1.283 A_C23:G30_A 21 -8.171 0.074 0.030 -0.105 3.641 1 19 A 24 A 29 0.507 A_G24:C29_A 22 -0.805 0.345 -0.347 -0.117 25.108 A 25 A 28 -40.648 A_G25:A28_A 23 -2.090 7.640 0.742 -5.182 -38.792 A 10 B 49 -135.087 A_A10:U49_B 24 -32.343 0.245 0.882 5.011 -20.683 10 A 60 A 57 -14.094 A_A60:G57_A 25 10.971 -6.900 0.703 -5.141 0.393 1 19 A 61 A 56 1.482 A_G61:C56_A 26 -4.197 -0.697 -0.307 -0.230 6.011 1 19 A 62 A 55 0.102 A_C62:G55_A 27 -7.982 -0.181 -0.308 -0.097 6.727 1 19 A 63 A 54 1.824 A_C63:G54_A 28 -7.812 -0.136 -0.241 -0.075 -5.159 1 19 A 64 A 53 2.560 A_G64:C53_A 29 -15.404 0.077 -0.384 -0.185 2.502 1 20 A 65 A 45 -3.746 A_U65:A45_A 30 -11.183 0.139 -0.438 -0.059 -14.548 1 19 A 66 A 44 2.684 A_G66:C44_A 31 -26.316 0.469 -0.095 -0.070 -8.786 1 28 A 67 A 43 -2.533 A_G67:U43_A 32 -10.617 -2.180 0.186 -0.539 0.998 1 20 A 68 A 42 -1.701 A_U68:A42_A 33 -12.928 -0.195 0.095 -0.012 1.736 1 28 A 69 A 41 -0.616 A_G69:U41_A 34 -11.808 -2.397 0.406 -0.600 4.841 1 19 A 70 A 40 1.488 A_C70:G40_A 35 -12.233 -0.022 0.115 -0.066 -1.665 1 20 A 71 A 39 0.892 A_A71:U39_A 36 -8.436 0.546 -0.098 -0.065 -5.150 1 19 A 72 A 38 5.104 A_G72:C38_A 37 -10.689 0.321 -0.520 -0.162 -11.806 1 19 A 73 A 37 0.032 A_G73:C37_A 38 -6.060 -0.149 -0.179 -0.072 27.445 1 20 A 74 A 83 -17.656 A_A74:U83_A 39 -14.581 -0.339 0.554 -0.012 16.416 1 19 A 75 A 82 3.316 A_C75:G82_A 40 -19.955 -0.147 -0.341 -0.036 -0.217 1 19 A 76 A 81 8.715 A_C76:G81_A 41 0.890 -0.417 -0.545 0.238 19.111 10 A 77 A 80 -15.410 A_G77:A80_A 42 7.260 6.849 0.792 -5.208 -1.878 1 19 B 1 B 99 -3.708 B_GTP1:C99_B 43 6.796 -1.009 -0.284 -0.402 -4.622 1 19 B 2 B 98 8.398 B_G2:C98_B 44 -2.553 0.405 -0.425 0.018 7.531 1 19 B 3 B 97 2.329 B_C3:G97_B 45 -8.686 0.210 -0.203 -0.074 -0.908 1 28 B 4 B 96 -0.349 B_U4:G96_B 46 -10.011 1.971 -0.375 -0.527 1.338 1 20 B 5 B 95 4.226 B_U5:A95_B 47 -7.228 0.433 0.210 -0.176 -8.207 1 19 B 6 B 94 2.294 B_G6:C94_B 48 -7.186 -0.287 -0.397 -0.130 -9.115 1 19 B 7 B 93 2.215 B_G7:C93_B 49 -6.175 0.549 -0.395 -0.037 -9.151 10 11 B 8 B 92 -2.942 B_G8:A92_B 50 -12.160 7.236 0.042 -4.184 10.191 4 7 B 9 B 91 -112.944 B_G9:G91_B 51 -8.730 5.217 -0.147 0.099 3.683 4 24 B 12 B 90 -101.652 B_U12:A90_B 52 -17.437 4.431 -0.830 -2.390 -4.558 10 11 B 13 B 89 -4.932 B_A13:G89_B 53 -8.693 -7.011 -0.021 -4.062 5.652 1 19 B 14 B 88 2.271 B_G14:C88_B 54 -6.307 -0.448 0.008 -0.085 5.930 1 19 B 15 B 87 -0.761 B_C15:G87_B 55 -1.898 -0.396 -0.004 -0.272 6.503 1 19 B 16 B 86 6.562 B_C16:G86_B 56 -3.986 0.676 -0.080 -0.369 23.936 1 16 B 17 B 85 12.516 B_U17:U85_B 57 -4.162 2.061 0.293 -1.684 6.157 1 19 B 18 B 35 4.533 B_G18:C35_B 58 -13.726 -0.586 1.066 -0.222 5.800 1 19 B 19 B 34 -2.971 B_C19:G34_B 59 -16.344 -0.012 0.284 -0.094 1.930 1 20 B 20 B 33 -0.585 B_U20:A33_B 60 -14.836 0.098 0.331 0.092 10.559 1 20 B 21 B 32 -3.705 B_U21:A32_B 61 -12.261 -0.413 -0.353 0.581 2.002 1 20 B 22 B 31 -1.781 B_U22:A31_B 62 -6.203 0.243 -0.285 0.060 5.135 1 19 B 23 B 30 -0.561 B_C23:G30_B 63 -0.330 0.749 -0.081 -0.266 -6.266 1 19 B 24 B 29 -1.423 B_G24:C29_B 64 -5.389 0.165 -0.132 -0.031 23.252 B 25 B 28 -44.092 B_G25:A28_B 65 -9.291 8.194 0.779 -5.475 -4.192 5 B 60 B 57 46.433 B_A60:G57_B 66 -5.153 -6.534 -0.169 -1.732 -1.000 1 19 B 61 B 56 1.297 B_G61:C56_B 67 -6.566 -0.331 -0.040 -0.077 1.685 1 19 B 62 B 55 -2.155 B_C62:G55_B 68 -5.960 0.413 -0.199 -0.109 0.012 1 19 B 63 B 54 3.456 B_C63:G54_B 69 -3.097 0.575 0.090 -0.159 -8.119 1 19 B 64 B 53 -0.593 B_G64:C53_B 70 -12.277 -0.101 -0.335 -0.055 2.019 1 20 B 65 B 45 -6.217 B_U65:A45_B 71 -10.747 -0.198 -0.087 0.059 -8.787 1 19 B 66 B 44 4.604 B_G66:C44_B 72 -23.642 0.287 -0.052 -0.047 -7.744 1 28 B 67 B 43 -6.138 B_G67:U43_B 73 -13.870 -2.144 -0.004 -0.678 2.628 1 20 B 68 B 42 -4.233 B_U68:A42_B 74 -7.648 -0.049 0.163 -0.003 9.610 1 28 B 69 B 41 -2.814 B_G69:U41_B 75 -10.454 -1.989 0.225 -0.404 8.633 1 19 B 70 B 40 -5.965 B_C70:G40_B 76 -11.669 0.550 0.002 -0.070 3.497 1 20 B 71 B 39 -0.771 B_A71:U39_B 77 -7.989 -0.058 -0.057 -0.002 -2.755 1 19 B 72 B 38 7.458 B_G72:C38_B 78 -15.700 0.687 0.126 0.089 -17.898 1 19 B 73 B 37 1.896 B_G73:C37_B 79 -13.465 0.137 -0.528 -0.125 5.124 1 19 B 75 B 82 -0.108 B_C75:G82_B 80 -16.789 0.340 -0.067 -0.159 -0.598 1 19 B 76 B 81 1.634 B_C76:G81_B 81 -3.956 0.268 -0.262 -0.139 14.303 B 77 B 80 -23.569 B_G77:A80_B 82 4.515 7.135 1.096 -5.347 2.563 31.022 A A 1 2 9.943 A A 99 98 2.922 5.291 -0.166 -1.933 AA_GTP1G2:C98C99_AA 1 -1.498 2.815 30.542 -4.475 0.067 3.426 35.214 A A 2 3 -0.884 A A 98 97 3.367 -0.534 -0.727 -1.482 AA_G2C3:G97C98_AA 2 -2.181 3.607 35.145 -2.368 0.865 3.349 41.485 A A 3 4 5.568 A A 97 96 3.516 3.938 0.125 -1.702 AA_C3U4:G96G97_AA 3 1.329 -1.880 41.286 -2.844 -0.027 2.072 20.992 A A 4 5 21.071 A A 96 95 2.880 7.471 0.493 -1.879 AA_U4U5:A95G96_AA 4 3.637 -10.257 19.295 -7.652 -0.138 2.134 28.765 A A 5 6 25.327 A A 95 94 3.086 12.192 0.104 -1.613 AA_U5G6:C94A95_AA 5 1.692 -3.514 26.049 -5.541 0.109 2.920 36.331 A A 6 7 24.179 A A 94 93 4.039 14.626 0.734 -2.184 AA_G6G7:C93C94_AA 6 4.959 -8.198 32.986 -5.789 -0.403 3.271 67.825 A A 7 8 17.454 A A 93 92 3.508 19.261 -0.414 -0.409 AA_G7G8:A92C93_AA 7 3.193 -2.893 65.279 -1.146 0.501 3.235 -11.911 A A 8 9 -4.209 A A 92 91 2.794 0.859 -1.874 -0.181 AA_G8G9:G91A92_AA 8 3.619 17.734 -11.318 -0.197 -4.521 3.528 40.345 A A 9 12 -5.365 A A 91 90 3.198 -3.678 1.760 -1.030 AA_G9U12:A90G91_AA 9 7.123 -10.391 39.573 -1.062 -1.717 2.199 -21.569 A A 12 13 5.367 A A 90 89 3.397 -1.996 5.804 -1.452 AA_U12A13:G89A90_AA 10 3.760 10.112 -21.149 4.570 16.810 3.040 60.121 A A 13 14 1.218 A A 89 88 3.046 1.219 -0.236 -0.742 AA_A13G14:C88G89_AA 11 -3.518 3.514 60.016 -0.797 0.075 3.040 33.897 A A 14 15 3.497 A A 88 87 3.153 2.034 0.120 -1.775 AA_G14C15:G87C88_AA 12 3.539 -6.084 33.657 -3.355 0.335 2.443 33.526 A A 15 16 21.304 A A 87 86 3.437 12.029 0.024 -2.219 AA_C15C16:G86G87_AA 13 -0.091 0.162 31.351 -5.689 -0.055 2.804 36.208 A A 16 17 8.637 A A 86 85 3.030 5.345 0.650 -1.009 AA_C16U17:U85G86_AA 14 -2.521 4.073 35.739 -2.298 -1.363 0.110 27.430 A A 17 18 45.205 A A 85 35 3.224 19.185 -2.092 -3.685 AA_U17G18:C35U85_AA 15 -5.843 13.767 18.811 -10.655 3.533 2.725 37.466 A A 18 19 10.110 A A 35 34 3.007 6.459 0.582 -1.187 AA_G18C19:G34C35_AA 16 -2.430 3.804 36.848 -2.596 -1.188 2.791 27.503 A A 19 20 15.372 A A 34 33 3.357 7.221 -0.690 -1.898 AA_C19U20:A33G34_AA 17 -1.807 3.848 26.495 -5.691 1.026 2.536 41.019 A A 20 21 23.074 A A 33 32 3.223 15.782 -0.839 -1.155 AA_U20U21:A32A33_AA 18 1.394 -2.038 37.958 -3.228 1.337 2.319 30.587 A A 21 22 26.783 A A 32 31 3.457 13.580 -0.543 -1.903 AA_U21U22:A31A32_AA 19 -5.302 10.458 26.963 -6.139 0.040 2.834 33.494 A A 22 23 7.137 A A 31 30 3.034 4.101 -0.029 -1.482 AA_U22C23:G30A31_AA 20 -1.703 2.963 33.207 -3.180 -0.203 2.559 34.453 A A 23 24 22.789 A A 30 29 3.348 13.172 -0.245 -1.452 AA_C23G24:C29G30_AA 21 0.927 -1.605 31.893 -4.378 0.549 2.663 56.080 A A 24 25 10.584 A A 29 28 2.820 9.904 -3.422 -1.505 AA_G24G25:A28C29_AA 22 -2.257 2.412 55.226 -2.079 3.531 2.983 48.114 A A 60 61 5.903 A A 57 56 2.742 4.784 2.410 -1.086 AA_A60G61:C56G57_AA 23 8.288 -10.226 47.208 -1.664 -2.381 2.913 35.492 A A 61 62 10.667 A A 56 55 3.183 6.467 -0.681 -1.361 AA_G61C62:G55C56_AA 24 -1.182 1.950 34.897 -3.123 0.954 2.424 34.327 A A 62 63 21.947 A A 55 54 3.157 12.663 0.199 -1.439 AA_C62C63:G54G55_AA 25 -0.806 1.397 31.962 -4.195 -0.449 2.715 34.334 A A 63 64 22.589 A A 54 53 3.589 13.018 0.498 -1.710 AA_C63G64:C53G54_AA 26 0.934 -1.620 31.826 -4.942 -0.698 2.608 33.543 A A 64 65 11.053 A A 53 45 3.034 6.336 -0.626 -2.252 AA_G64U65:A45C53_AA 27 -2.747 4.793 32.845 -4.808 0.692 2.257 44.301 A A 65 66 36.397 A A 45 44 3.465 25.851 1.076 -1.128 AA_U65G66:C44A45_AA 28 1.430 -2.014 36.261 -3.839 -1.298 2.251 28.101 A A 66 67 18.504 A A 44 43 2.719 8.697 -0.656 -1.328 AA_G66G67:U43C44_AA 29 -8.546 18.183 25.365 -4.372 -0.256 2.985 35.091 A A 67 68 2.623 A A 43 42 3.054 1.581 -0.087 -1.511 AA_G67U68:A42U43_AA 30 0.313 -0.520 35.056 -2.725 0.188 2.382 26.799 A A 68 69 14.743 A A 42 41 2.936 6.704 -0.146 -1.710 AA_U68G69:U41A42_AA 31 -6.065 13.338 25.255 -5.141 -0.999 2.929 42.079 A A 69 70 8.716 A A 41 40 3.147 6.237 0.103 -1.328 AA_G69C70:G40U41_AA 32 0.682 -0.953 41.630 -2.451 -0.078 2.952 36.724 A A 70 71 14.613 A A 40 39 3.364 9.117 -0.195 -1.295 AA_C70A71:U39G40_AA 33 0.342 -0.548 35.611 -3.277 0.355 2.907 30.591 A A 71 72 17.031 A A 39 38 3.442 8.839 0.451 -1.497 AA_A71G72:C38U39_AA 34 3.886 -7.487 29.062 -4.581 -0.089 2.634 28.983 A A 72 73 16.375 A A 38 37 3.302 8.089 0.083 -1.958 AA_G72G73:C37C38_AA 35 -1.201 2.431 27.830 -5.567 -0.412 1.551 73.945 A A 73 74 4.151 A A 37 83 2.860 4.911 3.483 -1.651 AA_G73A74:U83C37_AA 36 -26.013 21.989 69.685 -1.481 -3.473 3.096 41.081 A A 74 75 12.088 A A 83 82 3.468 8.416 1.050 -1.953 AA_A74C75:G82U83_AA 37 3.814 -5.478 40.072 -3.713 -1.076 2.594 33.064 A A 75 76 23.730 A A 82 81 3.609 13.141 -0.162 -1.894 AA_C75C76:G81G82_AA 38 -2.118 3.824 30.335 -5.532 -0.071 3.020 54.115 A A 76 77 5.945 A A 81 80 2.755 5.383 -2.802 -0.979 AA_C76G77:A80G81_AA 39 -8.224 9.083 53.281 -1.371 2.630 3.024 43.017 B B 1 2 10.638 B B 99 98 3.226 7.706 -0.514 -1.112 BB_GTP1G2:C98C99_BB 40 -9.235 12.748 41.378 -2.260 -0.190 3.182 29.218 B B 2 3 -0.988 B B 98 97 3.151 -0.498 -0.200 -1.626 BB_G2C3:G97C98_BB 41 -0.874 1.734 29.201 -3.118 0.213 2.983 37.657 B B 3 4 14.838 B B 97 96 3.537 9.466 -0.203 -1.688 BB_C3U4:G96G97_BB 42 3.823 -5.992 36.295 -3.863 0.819 1.921 29.084 B B 4 5 27.069 B B 96 95 2.992 13.121 0.381 -1.734 BB_U4U5:A95G96_BB 43 0.627 -1.293 26.006 -5.740 -0.650 1.818 33.917 B B 5 6 31.772 B B 95 94 3.154 17.620 -0.158 -1.675 BB_U5G6:C94A95_BB 44 4.205 -7.582 28.795 -5.210 0.830 2.891 33.399 B B 6 7 13.809 B B 94 93 3.402 7.865 0.159 -1.819 BB_G6G7:C93C94_BB 45 -0.753 1.322 32.477 -4.436 -0.398 3.358 65.100 B B 7 8 10.250 B B 93 92 3.507 10.980 -0.114 -0.623 BB_G7G8:A92C93_BB 46 4.835 -4.513 64.105 -1.063 0.319 3.341 -16.921 B B 8 9 -6.798 B B 92 91 3.026 1.885 -1.434 -0.421 BB_G8G9:G91A92_BB 47 9.313 33.578 -14.018 0.120 1.604 3.962 39.610 B B 9 12 -3.412 B B 91 90 3.273 -2.277 2.715 -0.836 BB_G9U12:A90G91_BB 48 11.952 -17.906 37.767 -0.931 -2.419 2.346 -12.905 B B 12 13 -27.565 B B 90 89 3.439 5.916 5.095 -0.889 BB_U12A13:G89A90_BB 49 2.638 12.289 -11.168 -2.350 25.478 3.178 55.455 B B 13 14 2.299 B B 89 88 3.233 2.139 0.737 -0.726 BB_A13G14:C88G89_BB 50 -2.117 2.276 55.380 -0.903 -0.913 3.262 30.628 B B 14 15 3.229 B B 88 87 3.362 1.701 -0.503 -2.419 BB_G14C15:G87C88_BB 51 -3.569 6.774 30.378 -4.920 0.237 2.709 34.633 B B 15 16 13.234 B B 87 86 3.178 7.814 0.227 -1.802 BB_C15C16:G86G87_BB 52 0.458 -0.776 33.763 -4.123 -0.317 2.213 34.030 B B 16 17 11.706 B B 86 85 2.567 6.774 0.300 -1.119 BB_C16U17:U85G86_BB 53 -5.963 10.305 32.845 -2.716 -1.221 1.296 45.587 B B 17 18 22.444 B B 85 35 2.864 16.963 0.918 -3.491 BB_U17G18:C35U85_BB 54 -6.052 8.007 42.054 -5.495 -1.538 3.042 34.167 B B 18 19 4.326 B B 35 34 3.231 2.538 -0.819 -1.744 BB_G18C19:G34C35_BB 55 2.102 -3.582 34.013 -3.353 1.713 3.171 32.981 B B 19 20 5.265 B B 34 33 3.307 2.984 0.277 -1.497 BB_C19U20:A33G34_BB 56 1.381 -2.437 32.821 -3.140 -0.254 2.371 30.172 B B 20 21 18.625 B B 33 32 2.914 9.485 -0.219 -1.027 BB_U20U21:A32A33_BB 57 5.373 -10.551 28.176 -3.590 1.336 2.673 34.559 B B 21 22 19.910 B B 32 31 3.397 11.611 0.247 -1.652 BB_U21U22:A31A32_BB 58 0.357 -0.612 32.605 -4.498 -0.363 2.918 33.720 B B 22 23 7.633 B B 31 30 3.118 4.412 -0.425 -1.537 BB_U22C23:G30A31_BB 59 -2.187 3.784 33.369 -3.314 0.403 2.066 35.222 B B 23 24 26.109 B B 30 29 3.198 15.290 0.099 -1.963 BB_C23G24:C29G30_BB 60 2.496 -4.262 31.729 -5.177 0.153 2.641 57.683 B B 24 25 5.466 B B 29 28 2.522 5.264 -4.202 -1.575 BB_G24G25:A28C29_BB 61 -3.972 4.124 57.337 -1.856 4.187 3.339 34.078 B B 60 61 9.452 B B 57 56 3.392 5.498 -0.130 0.023 BB_A60G61:C56G57_BB 62 -4.864 8.361 33.301 -0.871 -0.584 2.916 34.134 B B 61 62 10.772 B B 56 55 3.251 6.288 -0.087 -1.557 BB_G61C62:G55C56_BB 63 1.197 -2.051 33.546 -3.601 0.329 3.021 33.318 B B 62 63 9.038 B B 55 54 3.328 5.162 0.519 -1.715 BB_C62C63:G54G55_BB 64 -0.692 1.212 32.920 -3.829 -1.018 2.949 29.913 B B 63 64 12.976 B B 54 53 3.457 6.636 -0.057 -1.880 BB_C63G64:C53G54_BB 65 2.635 -5.152 29.067 -5.007 0.652 2.984 32.147 B B 64 65 5.911 B B 53 45 3.132 3.247 -0.525 -1.776 BB_G64U65:A45C53_BB 66 -6.395 11.641 31.357 -3.757 -0.136 2.505 41.609 B B 65 66 29.101 B B 45 44 3.488 19.892 1.090 -1.340 BB_U65G66:C44A45_BB 67 1.198 -1.753 36.714 -3.950 -1.411 2.184 29.441 B B 66 67 22.533 B B 44 43 2.834 11.048 -0.736 -1.455 BB_G66G67:U43C44_BB 68 -7.579 15.458 26.277 -4.785 0.131 3.044 35.976 B B 67 68 2.148 B B 43 42 3.082 1.326 -0.367 -1.510 BB_G67U68:A42U43_BB 69 -2.530 4.100 35.866 -2.622 0.256 2.164 25.077 B B 68 69 19.539 B B 42 41 2.849 8.314 0.078 -1.554 BB_U68G69:U41A42_BB 70 -2.390 5.617 23.560 -5.523 -0.740 3.107 44.560 B B 69 70 8.025 B B 41 40 3.320 6.067 0.184 -1.462 BB_G69C70:G40U41_BB 71 1.340 -1.772 44.147 -2.479 -0.121 2.672 28.337 B B 70 71 17.602 B B 40 39 3.315 8.477 0.373 -1.759 BB_C70A71:U39G40_BB 72 2.703 -5.613 26.931 -5.434 -0.175 3.104 32.957 B B 71 72 12.806 B B 39 38 3.478 7.207 0.580 -1.483 BB_A71G72:C38U39_BB 73 1.440 -2.559 32.149 -3.864 -0.773 2.383 35.749 B B 72 73 22.955 B B 38 37 3.400 13.737 -0.658 -1.906 BB_G72G73:C37C38_BB 74 2.739 -4.578 32.973 -4.933 1.436 4.790 87.130 B B 73 75 24.553 B B 37 82 6.521 32.977 1.183 -2.990 BB_G73C75:G82C37_BB 75 -23.834 17.746 78.788 -3.519 -1.834 3.048 34.010 B B 75 76 15.299 B B 82 81 3.515 8.851 0.028 -1.388 BB_C75C76:G81G82_BB 76 -0.525 0.908 32.866 -3.817 -0.133 2.628 53.422 B B 76 77 13.331 B B 81 80 2.799 11.891 -2.937 -1.339 BB_C76G77:A80G81_BB 77 -3.349 3.754 52.077 -2.122 3.089 pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn repository Initial release Author supporting evidence Data collection Database references Derived calculations Refinement description 1 0 2019-10-02 1 1 2020-01-01 1 2 2023-10-11 _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM116632 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM118174 N RCSB Y RCSB 2018-11-14 REL REL MN MN SUBJECT OF INVESTIGATION MG MAGNESIUM ION MN MANGANESE (II) ION SR STRONTIUM ION NA SODIUM ION HOH water 347 Xanthomonas oryzae sample 1 99 4Y1I PDB experimental model MG 15 2 MG MG 101 A MG 16 2 MG MG 102 A MG 21 2 MG MG 103 A MG 22 2 MG MG 104 A MG 23 2 MG MG 105 A MG 24 2 MG MG 106 A MG 31 2 MG MG 107 A MG 33 2 MG MG 108 A MG 35 2 MG MG 109 A MG 36 2 MG MG 110 A MG 37 2 MG MG 111 A MG 38 2 MG MG 112 A MG 39 2 MG MG 113 A MG 50 2 MG MG 114 A MG 51 2 MG MG 115 A MG 52 2 MG MG 116 A MG 56 2 MG MG 117 A MN 5 3 MN MN 118 A MN 7 3 MN MN 119 A SR 1 4 SR SR 120 A SR 2 4 SR SR 121 A SR 3 4 SR SR 122 A SR 5 4 SR SR 123 A SR 6 4 SR SR 124 A SR 8 4 SR SR 125 A MN 10 3 MN MN 101 B MN 11 3 MN MN 102 B MN 12 3 MN MN 103 B MG 6 2 MG MG 104 B MG 10 2 MG MG 105 B MG 13 2 MG MG 106 B MG 19 2 MG MG 107 B MG 20 2 MG MG 108 B MG 25 2 MG MG 109 B MG 28 2 MG MG 110 B MG 30 2 MG MG 111 B MG 34 2 MG MG 112 B MG 40 2 MG MG 113 B MG 41 2 MG MG 114 B MG 42 2 MG MG 115 B MG 43 2 MG MG 116 B MG 44 2 MG MG 117 B MG 45 2 MG MG 118 B MG 46 2 MG MG 119 B MG 47 2 MG MG 120 B MG 48 2 MG MG 121 B MG 49 2 MG MG 122 B MG 53 2 MG MG 123 B MG 54 2 MG MG 124 B MG 55 2 MG MG 125 B MN 3 3 MN MN 126 B MN 6 3 MN MN 127 B NA 1 5 NA NA 128 B SR 4 4 SR SR 129 B SR 7 4 SR SR 130 B SR 9 4 SR SR 131 B HOH 6 6 HOH HOH 201 A HOH 5 6 HOH HOH 202 A HOH 7 6 HOH HOH 203 A HOH 4 6 HOH HOH 204 A HOH 2 6 HOH HOH 201 B HOH 1 6 HOH HOH 202 B HOH 3 6 HOH HOH 203 B GTP 1 n 1 GTP 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A U 4 n 4 U 4 A U 5 n 5 U 5 A G 6 n 6 G 6 A G 7 n 7 G 7 A G 8 n 8 G 8 A G 9 n 9 G 9 A A 10 n 10 A 10 A G 11 n 11 G 11 A U 12 n 12 U 12 A A 13 n 13 A 13 A G 14 n 14 G 14 A C 15 n 15 C 15 A C 16 n 16 C 16 A U 17 n 17 U 17 A G 18 n 18 G 18 A C 19 n 19 C 19 A U 20 n 20 U 20 A U 21 n 21 U 21 A U 22 n 22 U 22 A C 23 n 23 C 23 A G 24 n 24 G 24 A G 25 n 25 G 25 A A 26 n 26 A 26 A A 27 n 27 A 27 A A 28 n 28 A 28 A C 29 n 29 C 29 A G 30 n 30 G 30 A A 31 n 31 A 31 A A 32 n 32 A 32 A A 33 n 33 A 33 A G 34 n 34 G 34 A C 35 n 35 C 35 A G 36 n 36 G 36 A C 37 n 37 C 37 A C 38 n 38 C 38 A U 39 n 39 U 39 A G 40 n 40 G 40 A U 41 n 41 U 41 A A 42 n 42 A 42 A U 43 n 43 U 43 A C 44 n 44 C 44 A A 45 n 45 A 45 A A 46 n 46 A 46 A C 47 n 47 C 47 A A 48 n 48 A 48 A U 49 n 49 U 49 A A 50 n 50 A 50 A C 51 n 51 C 51 A U 52 n 52 U 52 A C 53 n 53 C 53 A G 54 n 54 G 54 A G 55 n 55 G 55 A C 56 n 56 C 56 A G 57 n 57 G 57 A A 58 n 58 A 58 A A 59 n 59 A 59 A A 60 n 60 A 60 A G 61 n 61 G 61 A C 62 n 62 C 62 A C 63 n 63 C 63 A G 64 n 64 G 64 A U 65 n 65 U 65 A G 66 n 66 G 66 A G 67 n 67 G 67 A U 68 n 68 U 68 A G 69 n 69 G 69 A C 70 n 70 C 70 A A 71 n 71 A 71 A G 72 n 72 G 72 A G 73 n 73 G 73 A A 74 n 74 A 74 A C 75 n 75 C 75 A C 76 n 76 C 76 A G 77 n 77 G 77 A A 78 n 78 A 78 A A 79 n 79 A 79 A A 80 n 80 A 80 A G 81 n 81 G 81 A G 82 n 82 G 82 A U 83 n 83 U 83 A C 84 n 84 C 84 A U 85 n 85 U 85 A G 86 n 86 G 86 A G 87 n 87 G 87 A C 88 n 88 C 88 A G 89 n 89 G 89 A A 90 n 90 A 90 A G 91 n 91 G 91 A A 92 n 92 A 92 A C 93 n 93 C 93 A C 94 n 94 C 94 A A 95 n 95 A 95 A G 96 n 96 G 96 A G 97 n 97 G 97 A C 98 n 98 C 98 A C 99 n 99 C 99 A GTP 1 n 1 GTP 1 B G 2 n 2 G 2 B C 3 n 3 C 3 B U 4 n 4 U 4 B U 5 n 5 U 5 B G 6 n 6 G 6 B G 7 n 7 G 7 B G 8 n 8 G 8 B G 9 n 9 G 9 B A 10 n 10 A 10 B G 11 n 11 G 11 B U 12 n 12 U 12 B A 13 n 13 A 13 B G 14 n 14 G 14 B C 15 n 15 C 15 B C 16 n 16 C 16 B U 17 n 17 U 17 B G 18 n 18 G 18 B C 19 n 19 C 19 B U 20 n 20 U 20 B U 21 n 21 U 21 B U 22 n 22 U 22 B C 23 n 23 C 23 B G 24 n 24 G 24 B G 25 n 25 G 25 B A 26 n 26 A 26 B A 27 n 27 A 27 B A 28 n 28 A 28 B C 29 n 29 C 29 B G 30 n 30 G 30 B A 31 n 31 A 31 B A 32 n 32 A 32 B A 33 n 33 A 33 B G 34 n 34 G 34 B C 35 n 35 C 35 B G 36 n 36 G 36 B C 37 n 37 C 37 B C 38 n 38 C 38 B U 39 n 39 U 39 B G 40 n 40 G 40 B U 41 n 41 U 41 B A 42 n 42 A 42 B U 43 n 43 U 43 B C 44 n 44 C 44 B A 45 n 45 A 45 B A 46 n 46 A 46 B C 47 n 47 C 47 B A 48 n 48 A 48 B U 49 n 49 U 49 B A 50 n 50 A 50 B C 51 n 51 C 51 B U 52 n 52 U 52 B C 53 n 53 C 53 B G 54 n 54 G 54 B G 55 n 55 G 55 B C 56 n 56 C 56 B G 57 n 57 G 57 B A 58 n 58 A 58 B A 59 n 59 A 59 B A 60 n 60 A 60 B G 61 n 61 G 61 B C 62 n 62 C 62 B C 63 n 63 C 63 B G 64 n 64 G 64 B U 65 n 65 U 65 B G 66 n 66 G 66 B G 67 n 67 G 67 B U 68 n 68 U 68 B G 69 n 69 G 69 B C 70 n 70 C 70 B A 71 n 71 A 71 B G 72 n 72 G 72 B G 73 n 73 G 73 B A 74 n 74 A 74 B C 75 n 75 C 75 B C 76 n 76 C 76 B G 77 n 77 G 77 B A 78 n 78 A 78 B A 79 n 79 A 79 B A 80 n 80 A 80 B G 81 n 81 G 81 B G 82 n 82 G 82 B U 83 n 83 U 83 B C 84 n 84 C 84 B U 85 n 85 U 85 B G 86 n 86 G 86 B G 87 n 87 G 87 B C 88 n 88 C 88 B G 89 n 89 G 89 B A 90 n 90 A 90 B G 91 n 91 G 91 B A 92 n 92 A 92 B C 93 n 93 C 93 B C 94 n 94 C 94 B A 95 n 95 A 95 B G 96 n 96 G 96 B G 97 n 97 G 97 B C 98 n 98 C 98 B C 99 n 99 C 99 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric Previous work established this as a Mn(II)-binding RNA. Current smFRET also confirms Mn(II) binding to the riboswitch. fluorescence resonance energy transfer A G 8 A OP1 G 8 1_555 A SR 123 Y SR SR 1_555 A G 9 A OP2 G 9 1_555 95.9 A G 8 A OP1 G 8 1_555 A SR 123 Y SR SR 1_555 A A 10 A OP1 A 10 1_555 92.2 A G 9 A OP2 G 9 1_555 A SR 123 Y SR SR 1_555 A A 10 A OP1 A 10 1_555 82.2 A G 8 A OP1 G 8 1_555 A SR 123 Y SR SR 1_555 A A 46 A OP1 A 46 1_555 154.9 A G 9 A OP2 G 9 1_555 A SR 123 Y SR SR 1_555 A A 46 A OP1 A 46 1_555 104.3 A A 10 A OP1 A 10 1_555 A SR 123 Y SR SR 1_555 A A 46 A OP1 A 46 1_555 76.3 A G 34 A O6 G 34 1_555 A MG 114 P MG MG 1_555 A HOH 204 GB O HOH 1_555 130.2 A U 43 A O4 U 43 1_555 A SR 120 V SR SR 1_555 A G 66 A O6 G 66 1_555 89.9 A U 43 A O4 U 43 1_555 A SR 120 V SR SR 1_555 A HOH 201 GB O HOH 1_555 68.4 A G 66 A O6 G 66 1_555 A SR 120 V SR SR 1_555 A HOH 201 GB O HOH 1_555 80.5 A U 43 A O4 U 43 1_555 A SR 120 V SR SR 1_555 A HOH 202 GB O HOH 1_555 86.6 A G 66 A O6 G 66 1_555 A SR 120 V SR SR 1_555 A HOH 202 GB O HOH 1_555 161.3 A HOH 201 GB O HOH 1_555 A SR 120 V SR SR 1_555 A HOH 202 GB O HOH 1_555 81.2 A U 43 A O4 U 43 1_555 A SR 120 V SR SR 1_555 A HOH 203 GB O HOH 1_555 171.8 A G 66 A O6 G 66 1_555 A SR 120 V SR SR 1_555 A HOH 203 GB O HOH 1_555 91.7 A HOH 201 GB O HOH 1_555 A SR 120 V SR SR 1_555 A HOH 203 GB O HOH 1_555 104.0 A HOH 202 GB O HOH 1_555 A SR 120 V SR SR 1_555 A HOH 203 GB O HOH 1_555 89.4 A A 46 A OP2 A 46 1_555 A MN 118 T MN MN 1_555 A C 47 A OP2 C 47 1_555 89.9 A A 46 A OP2 A 46 1_555 A MN 118 T MN MN 1_555 A A 48 A N1 A 48 1_555 88.7 A C 47 A OP2 C 47 1_555 A MN 118 T MN MN 1_555 A A 48 A N1 A 48 1_555 86.2 A C 47 A O2 C 47 1_555 A SR 124 Z SR SR 1_555 B HOH 203 HB O HOH 1_555 108.1 A G 77 A O6 G 77 1_555 A MG 110 L MG MG 1_555 A A 79 A OP1 A 79 1_555 112.7 A G 81 A OP2 G 81 1_555 A MG 112 N MG MG 1_555 A G 81 A O5' G 81 1_555 57.2 B G 9 B OP1 G 9 1_555 B MN 102 CA MN MN 1_555 B A 46 B OP2 A 46 1_555 90.3 B G 9 B OP1 G 9 1_555 B MN 102 CA MN MN 1_555 B C 47 B OP2 C 47 1_555 80.7 B A 46 B OP2 A 46 1_555 B MN 102 CA MN MN 1_555 B C 47 B OP2 C 47 1_555 75.4 B G 9 B OP1 G 9 1_555 B MN 102 CA MN MN 1_555 B A 48 B N7 A 48 1_555 154.8 B A 46 B OP2 A 46 1_555 B MN 102 CA MN MN 1_555 B A 48 B N7 A 48 1_555 89.0 B C 47 B OP2 C 47 1_555 B MN 102 CA MN MN 1_555 B A 48 B N7 A 48 1_555 74.8 B G 9 B OP1 G 9 1_555 B MN 102 CA MN MN 1_555 B C 51 B OP1 C 51 1_555 78.0 B A 46 B OP2 A 46 1_555 B MN 102 CA MN MN 1_555 B C 51 B OP1 C 51 1_555 166.1 B C 47 B OP2 C 47 1_555 B MN 102 CA MN MN 1_555 B C 51 B OP1 C 51 1_555 95.1 B A 48 B N7 A 48 1_555 B MN 102 CA MN MN 1_555 B C 51 B OP1 C 51 1_555 98.3 B G 9 B OP1 G 9 1_555 B MN 102 CA MN MN 1_555 B U 52 B OP2 U 52 1_555 109.2 B A 46 B OP2 A 46 1_555 B MN 102 CA MN MN 1_555 B U 52 B OP2 U 52 1_555 101.5 B C 47 B OP2 C 47 1_555 B MN 102 CA MN MN 1_555 B U 52 B OP2 U 52 1_555 169.7 B A 48 B N7 A 48 1_555 B MN 102 CA MN MN 1_555 B U 52 B OP2 U 52 1_555 95.6 B C 51 B OP1 C 51 1_555 B MN 102 CA MN MN 1_555 B U 52 B OP2 U 52 1_555 89.6 B G 9 B OP2 G 9 1_555 B MG 115 PA MG MG 1_555 B A 46 B OP1 A 46 1_555 92.5 B G 9 B OP2 G 9 1_555 B MG 115 PA MG MG 1_555 B U 52 B OP1 U 52 1_555 100.5 B A 46 B OP1 A 46 1_555 B MG 115 PA MG MG 1_555 B U 52 B OP1 U 52 1_555 82.5 B G 9 B OP2 G 9 1_555 B MG 115 PA MG MG 1_555 B HOH 201 HB O HOH 1_555 98.7 B A 46 B OP1 A 46 1_555 B MG 115 PA MG MG 1_555 B HOH 201 HB O HOH 1_555 97.3 B U 52 B OP1 U 52 1_555 B MG 115 PA MG MG 1_555 B HOH 201 HB O HOH 1_555 160.8 B G 9 B OP2 G 9 1_555 B MG 115 PA MG MG 1_555 B HOH 202 HB O HOH 1_555 154.9 B A 46 B OP1 A 46 1_555 B MG 115 PA MG MG 1_555 B HOH 202 HB O HOH 1_555 112.6 B U 52 B OP1 U 52 1_555 B MG 115 PA MG MG 1_555 B HOH 202 HB O HOH 1_555 85.4 B HOH 201 HB O HOH 1_555 B MG 115 PA MG MG 1_555 B HOH 202 HB O HOH 1_555 77.0 B A 32 B OP1 A 32 1_555 B MG 125 ZA MG MG 1_555 B A 32 B OP2 A 32 1_555 56.2 B A 32 B OP1 A 32 1_555 B MG 125 ZA MG MG 1_555 B A 32 B O5' A 32 1_555 66.4 B A 32 B OP2 A 32 1_555 B MG 125 ZA MG MG 1_555 B A 32 B O5' A 32 1_555 54.8 B A 32 B OP1 A 32 1_555 B MG 125 ZA MG MG 1_555 B A 33 B OP2 A 33 1_555 159.7 B A 32 B OP2 A 32 1_555 B MG 125 ZA MG MG 1_555 B A 33 B OP2 A 33 1_555 125.0 B A 32 B O5' A 32 1_555 B MG 125 ZA MG MG 1_555 B A 33 B OP2 A 33 1_555 97.1 B U 43 B O4 U 43 1_555 B SR 130 EB SR SR 1_555 B G 66 B O6 G 66 1_555 91.6 B C 99 B O3' C 99 1_555 B MG 113 NA MG MG 1_555 B C 99 B O2' C 99 1_555 79.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -32.23 1.20 119.70 87.47 A A A C3' O3' P GTP GTP G 1 1 2 Y 1 -29.49 1.90 104.00 74.51 A A A O3' P O5' GTP G G 1 2 2 Y 1 46.56 1.10 110.50 157.06 A A A O3' P OP2 GTP G G 1 2 2 Y 1 -22.44 2.20 105.20 82.76 A A A O3' P OP1 GTP G G 1 2 2 Y 1 -30.91 1.20 119.70 88.79 B B B C3' O3' P GTP GTP G 1 1 2 Y 1 21.70 1.90 104.00 125.70 B B B O3' P O5' GTP G G 1 2 2 Y 1 -29.03 2.20 105.20 76.17 B B B O3' P OP1 GTP G G 1 2 2 Y 1 B B O3' P GTP G 1 2 0.100 0.012 1.607 1.707 Y 0.2207 0.2092 0.2102 2.850 62.64 2379 28774 8.27 99.35 0.50 1 FREE R-VALUE 1.33 MOLECULAR REPLACEMENT 26.38 0.90 1.11 4Y1I 2.850 62.64 7 4341 56 4278 0 0.008 4787 0.497 7466 14.270 2372 0.026 988 0.002 198 0.4124 0.5003 2.9082 148 1460 94.00 0.4802 0.4275 2.9715 117 1558 100.00 0.4410 0.3648 3.0406 147 1549 100.00 0.3251 0.3026 3.1166 145 1581 100.00 0.2805 0.2812 3.2009 143 1529 100.00 0.2964 0.2687 3.2951 119 1586 100.00 0.2739 0.2617 3.4014 147 1577 100.00 0.2433 0.2616 3.5230 139 1547 100.00 0.2721 0.2509 3.6640 142 1576 100.00 0.2125 0.2138 3.8308 138 1557 100.00 0.2184 0.2033 4.0327 138 1557 100.00 0.2058 0.2000 4.2853 138 1564 100.00 0.2520 0.1862 4.6161 140 1537 100.00 0.1791 0.1772 5.0804 145 1556 99.00 0.1746 0.1711 5.8151 150 1552 100.00 0.2173 0.1696 7.3247 135 1557 100.00 0.1552 0.1599 62.6580 148 1552 99.00 2.85 62.64 6N2V 15512 0.999 0.118 0.04499 0.1265 1 12.85 7.7 99.75 2.932 2.85 2.952 0.66 1510 0.306 1.131 3.15 1 7.6 99.07 refinement PHENIX 1.13_2998 data reduction XDS data scaling XDS phasing AutoSol N Manganese riboswitch from Xanthmonas oryzae bound to Mn(II) 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 3 N N 3 N N 3 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 5 N N 4 N N 4 N N 4 N N 6 N N 6 N N covale 1.629 both A GTP 1 A O3' GTP 1 1_555 A G 2 A P G 2 1_555 covale 1.707 both B GTP 1 B O3' GTP 1 1_555 B G 2 B P G 2 1_555 metalc 2.382 A G 8 A O6 G 8 1_555 A SR 122 X SR SR 1_555 metalc 2.377 A G 8 A OP1 G 8 1_555 A SR 123 Y SR SR 1_555 metalc 2.429 A G 9 A OP2 G 9 1_555 A SR 123 Y SR SR 1_555 metalc 2.044 A A 10 A OP2 A 10 1_555 A MG 104 F MG MG 1_555 metalc 2.391 A A 10 A OP1 A 10 1_555 A SR 123 Y SR SR 1_555 metalc 2.490 A G 25 A N7 G 25 1_555 A SR 125 AA SR SR 1_555 metalc 1.986 A A 33 A O2' A 33 1_555 A MG 116 R MG MG 1_555 metalc 2.332 A G 34 A O6 G 34 1_555 A MG 114 P MG MG 1_555 metalc 2.465 A U 43 A O4 U 43 1_555 A SR 120 V SR SR 1_555 metalc 2.151 A A 46 A OP2 A 46 1_555 A MN 118 T MN MN 1_555 metalc 2.384 A A 46 A OP1 A 46 1_555 A SR 123 Y SR SR 1_555 metalc 2.185 A C 47 A OP2 C 47 1_555 A MN 118 T MN MN 1_555 metalc 2.407 A C 47 A O2 C 47 1_555 A SR 124 Z SR SR 1_555 metalc 2.173 A A 48 A N1 A 48 1_555 A MN 118 T MN MN 1_555 metalc 2.160 A G 54 A OP1 G 54 1_555 A MG 117 S MG MG 1_555 metalc 2.223 A G 57 A O6 G 57 1_555 A MG 103 E MG MG 1_555 metalc 2.474 A G 66 A O6 G 66 1_555 A SR 120 V SR SR 1_555 metalc 2.432 A G 77 A O6 G 77 1_555 A MG 110 L MG MG 1_555 metalc 2.295 A A 79 A OP1 A 79 1_555 A MG 110 L MG MG 1_555 metalc 2.132 A A 80 A OP2 A 80 1_555 A MG 111 M MG MG 1_555 metalc 2.220 A G 81 A OP2 G 81 1_555 A MG 112 N MG MG 1_555 metalc 2.856 A G 81 A O5' G 81 1_555 A MG 112 N MG MG 1_555 metalc 2.278 A C 99 A OP2 C 99 1_555 A MG 108 J MG MG 1_555 metalc 2.071 A MG 114 P MG MG 1_555 A HOH 204 GB O HOH 1_555 metalc 2.386 A SR 120 V SR SR 1_555 A HOH 201 GB O HOH 1_555 metalc 2.438 A SR 120 V SR SR 1_555 A HOH 202 GB O HOH 1_555 metalc 2.421 A SR 120 V SR SR 1_555 A HOH 203 GB O HOH 1_555 metalc 2.943 A SR 124 Z SR SR 1_555 B HOH 203 HB O HOH 1_555 metalc 2.353 B U 5 B O4 U 5 1_555 B MG 109 JA MG MG 1_555 metalc 2.402 B G 8 B O6 G 8 1_555 B SR 129 DB SR SR 1_555 metalc 2.304 B G 9 B OP1 G 9 1_555 B MN 102 CA MN MN 1_555 metalc 1.849 B G 9 B OP2 G 9 1_555 B MG 115 PA MG MG 1_555 metalc 2.525 B A 13 B OP2 A 13 1_555 B NA 128 CB NA NA 1_555 metalc 2.383 B G 25 B N7 G 25 1_555 B MN 126 AB MN MN 1_555 metalc 2.375 B A 32 B OP1 A 32 1_555 B MG 125 ZA MG MG 1_555 metalc 2.969 B A 32 B OP2 A 32 1_555 B MG 125 ZA MG MG 1_555 metalc 2.156 B A 32 B O5' A 32 1_555 B MG 125 ZA MG MG 1_555 metalc 2.376 B A 33 B OP2 A 33 1_555 B MG 125 ZA MG MG 1_555 metalc 2.458 B U 43 B O4 U 43 1_555 B SR 130 EB SR SR 1_555 metalc 2.317 B A 46 B OP2 A 46 1_555 B MN 102 CA MN MN 1_555 metalc 2.028 B A 46 B OP1 A 46 1_555 B MG 115 PA MG MG 1_555 metalc 2.069 B C 47 B OP2 C 47 1_555 B MN 102 CA MN MN 1_555 metalc 2.211 B C 47 B O2 C 47 1_555 B MG 106 GA MG MG 1_555 metalc 2.338 B A 48 B N7 A 48 1_555 B MN 102 CA MN MN 1_555 metalc 2.319 B C 51 B OP1 C 51 1_555 B MN 102 CA MN MN 1_555 metalc 2.192 B U 52 B OP2 U 52 1_555 B MN 102 CA MN MN 1_555 metalc 1.827 B U 52 B OP1 U 52 1_555 B MG 115 PA MG MG 1_555 metalc 2.160 B C 56 B OP2 C 56 1_555 B MG 122 WA MG MG 1_555 metalc 2.102 B G 57 B O6 G 57 1_555 B MN 103 DA MN MN 1_555 metalc 2.444 B G 66 B O6 G 66 1_555 B SR 130 EB SR SR 1_555 metalc 2.189 B G 72 B OP2 G 72 1_555 B MG 119 TA MG MG 1_555 metalc 2.183 B G 73 B OP2 G 73 1_555 B MG 118 SA MG MG 1_555 metalc 2.376 B C 84 B O2' C 84 1_555 B MG 108 IA MG MG 1_555 metalc 2.217 B C 99 B O3' C 99 1_555 B MG 113 NA MG MG 1_555 metalc 2.100 B C 99 B O2' C 99 1_555 B MG 113 NA MG MG 1_555 metalc 2.055 B MG 115 PA MG MG 1_555 B HOH 201 HB O HOH 1_555 metalc 2.061 B MG 115 PA MG MG 1_555 B HOH 202 HB O HOH 1_555 hydrog WATSON-CRICK A GTP 1 A N1 GTP 1 1_555 A C 99 A N3 C 99 1_555 hydrog WATSON-CRICK A GTP 1 A N2 GTP 1 1_555 A C 99 A O2 C 99 1_555 hydrog WATSON-CRICK A GTP 1 A O6 GTP 1 1_555 A C 99 A N4 C 99 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 98 A N3 C 98 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 98 A O2 C 98 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 98 A N4 C 98 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 97 A N1 G 97 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 97 A O6 G 97 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 97 A N2 G 97 1_555 hydrog TYPE_28_PAIR A U 4 A N3 U 4 1_555 A G 96 A O6 G 96 1_555 hydrog TYPE_28_PAIR A U 4 A O2 U 4 1_555 A G 96 A N1 G 96 1_555 hydrog WATSON-CRICK A U 5 A N3 U 5 1_555 A A 95 A N1 A 95 1_555 hydrog WATSON-CRICK A U 5 A O4 U 5 1_555 A A 95 A N6 A 95 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 94 A N3 C 94 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 94 A O2 C 94 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 94 A N4 C 94 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 A C 93 A N3 C 93 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 A C 93 A O2 C 93 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 A C 93 A N4 C 93 1_555 hydrog TYPE_11_PAIR A G 8 A N2 G 8 1_555 A A 92 A N7 A 92 1_555 hydrog TYPE_11_PAIR A G 8 A N3 G 8 1_555 A A 92 A N6 A 92 1_555 hydrog TYPE_7_PAIR A G 9 A N1 G 9 1_555 A G 91 A N7 G 91 1_555 hydrog TYPE_7_PAIR A G 9 A N2 G 9 1_555 A G 91 A O6 G 91 1_555 hydrog A-G MISPAIR A A 10 A N3 A 10 1_555 A G 66 A N2 G 66 1_555 hydrog A-U PAIR A A 10 A N6 A 10 1_555 B U 49 B O4 U 49 1_555 hydrog REVERSED HOOGSTEEN A U 12 A N3 U 12 1_555 A A 90 A N7 A 90 1_555 hydrog REVERSED HOOGSTEEN A U 12 A O2 U 12 1_555 A A 90 A N6 A 90 1_555 hydrog TYPE_11_PAIR A A 13 A N6 A 13 1_555 A G 89 A N3 G 89 1_555 hydrog TYPE_11_PAIR A A 13 A N7 A 13 1_555 A G 89 A N2 G 89 1_555 hydrog WATSON-CRICK A G 14 A N1 G 14 1_555 A C 88 A N3 C 88 1_555 hydrog WATSON-CRICK A G 14 A N2 G 14 1_555 A C 88 A O2 C 88 1_555 hydrog WATSON-CRICK A G 14 A O6 G 14 1_555 A C 88 A N4 C 88 1_555 hydrog WATSON-CRICK A C 15 A N3 C 15 1_555 A G 87 A N1 G 87 1_555 hydrog WATSON-CRICK A C 15 A N4 C 15 1_555 A G 87 A O6 G 87 1_555 hydrog WATSON-CRICK A C 15 A O2 C 15 1_555 A G 87 A N2 G 87 1_555 hydrog WATSON-CRICK A C 16 A N3 C 16 1_555 A G 86 A N1 G 86 1_555 hydrog WATSON-CRICK A C 16 A N4 C 16 1_555 A G 86 A O6 G 86 1_555 hydrog WATSON-CRICK A C 16 A O2 C 16 1_555 A G 86 A N2 G 86 1_555 hydrog TYPE_16_PAIR A U 17 A N3 U 17 1_555 A U 85 A O4 U 85 1_555 hydrog TYPE_16_PAIR A U 17 A O2 U 17 1_555 A U 85 A N3 U 85 1_555 hydrog WATSON-CRICK A G 18 A N1 G 18 1_555 A C 35 A N3 C 35 1_555 hydrog WATSON-CRICK A G 18 A N2 G 18 1_555 A C 35 A O2 C 35 1_555 hydrog WATSON-CRICK A G 18 A O6 G 18 1_555 A C 35 A N4 C 35 1_555 hydrog WATSON-CRICK A C 19 A N3 C 19 1_555 A G 34 A N1 G 34 1_555 hydrog WATSON-CRICK A C 19 A N4 C 19 1_555 A G 34 A O6 G 34 1_555 hydrog WATSON-CRICK A C 19 A O2 C 19 1_555 A G 34 A N2 G 34 1_555 hydrog WATSON-CRICK A U 20 A N3 U 20 1_555 A A 33 A N1 A 33 1_555 hydrog WATSON-CRICK A U 20 A O4 U 20 1_555 A A 33 A N6 A 33 1_555 hydrog WATSON-CRICK A U 21 A N3 U 21 1_555 A A 32 A N1 A 32 1_555 hydrog WATSON-CRICK A U 21 A O4 U 21 1_555 A A 32 A N6 A 32 1_555 hydrog WATSON-CRICK A U 22 A N3 U 22 1_555 A A 31 A N1 A 31 1_555 hydrog WATSON-CRICK A U 22 A O4 U 22 1_555 A A 31 A N6 A 31 1_555 hydrog WATSON-CRICK A C 23 A N3 C 23 1_555 A G 30 A N1 G 30 1_555 hydrog WATSON-CRICK A C 23 A N4 C 23 1_555 A G 30 A O6 G 30 1_555 hydrog WATSON-CRICK A C 23 A O2 C 23 1_555 A G 30 A N2 G 30 1_555 hydrog WATSON-CRICK A G 24 A N1 G 24 1_555 A C 29 A N3 C 29 1_555 hydrog WATSON-CRICK A G 24 A N2 G 24 1_555 A C 29 A O2 C 29 1_555 hydrog WATSON-CRICK A G 24 A O6 G 24 1_555 A C 29 A N4 C 29 1_555 hydrog G-A MISPAIR A G 25 A N2 G 25 1_555 A A 28 A N7 A 28 1_555 hydrog G-A MISPAIR A G 36 A N2 G 36 1_555 A A 74 A N1 A 74 1_555 hydrog G-U MISPAIR A G 36 A N2 G 36 1_555 A U 83 A O2 U 83 1_555 hydrog WATSON-CRICK A C 37 A N3 C 37 1_555 A G 73 A N1 G 73 1_555 hydrog WATSON-CRICK A C 37 A N4 C 37 1_555 A G 73 A O6 G 73 1_555 hydrog WATSON-CRICK A C 37 A O2 C 37 1_555 A G 73 A N2 G 73 1_555 hydrog WATSON-CRICK A C 38 A N3 C 38 1_555 A G 72 A N1 G 72 1_555 hydrog WATSON-CRICK A C 38 A N4 C 38 1_555 A G 72 A O6 G 72 1_555 hydrog WATSON-CRICK A C 38 A O2 C 38 1_555 A G 72 A N2 G 72 1_555 hydrog WATSON-CRICK A U 39 A N3 U 39 1_555 A A 71 A N1 A 71 1_555 hydrog WATSON-CRICK A U 39 A O4 U 39 1_555 A A 71 A N6 A 71 1_555 hydrog WATSON-CRICK A G 40 A N1 G 40 1_555 A C 70 A N3 C 70 1_555 hydrog WATSON-CRICK A G 40 A N2 G 40 1_555 A C 70 A O2 C 70 1_555 hydrog WATSON-CRICK A G 40 A O6 G 40 1_555 A C 70 A N4 C 70 1_555 hydrog TYPE_28_PAIR A U 41 A N3 U 41 1_555 A G 69 A O6 G 69 1_555 hydrog TYPE_28_PAIR A U 41 A O2 U 41 1_555 A G 69 A N1 G 69 1_555 hydrog WATSON-CRICK A A 42 A N1 A 42 1_555 A U 68 A N3 U 68 1_555 hydrog WATSON-CRICK A A 42 A N6 A 42 1_555 A U 68 A O4 U 68 1_555 hydrog TYPE_28_PAIR A U 43 A N3 U 43 1_555 A G 67 A O6 G 67 1_555 hydrog TYPE_28_PAIR A U 43 A O2 U 43 1_555 A G 67 A N1 G 67 1_555 hydrog WATSON-CRICK A C 44 A N3 C 44 1_555 A G 66 A N1 G 66 1_555 hydrog WATSON-CRICK A C 44 A N4 C 44 1_555 A G 66 A O6 G 66 1_555 hydrog WATSON-CRICK A C 44 A O2 C 44 1_555 A G 66 A N2 G 66 1_555 hydrog WATSON-CRICK A A 45 A N1 A 45 1_555 A U 65 A N3 U 65 1_555 hydrog WATSON-CRICK A A 45 A N6 A 45 1_555 A U 65 A O4 U 65 1_555 hydrog WATSON-CRICK A C 53 A N3 C 53 1_555 A G 64 A N1 G 64 1_555 hydrog WATSON-CRICK A C 53 A N4 C 53 1_555 A G 64 A O6 G 64 1_555 hydrog WATSON-CRICK A C 53 A O2 C 53 1_555 A G 64 A N2 G 64 1_555 hydrog WATSON-CRICK A G 54 A N1 G 54 1_555 A C 63 A N3 C 63 1_555 hydrog WATSON-CRICK A G 54 A N2 G 54 1_555 A C 63 A O2 C 63 1_555 hydrog WATSON-CRICK A G 54 A O6 G 54 1_555 A C 63 A N4 C 63 1_555 hydrog WATSON-CRICK A G 55 A N1 G 55 1_555 A C 62 A N3 C 62 1_555 hydrog WATSON-CRICK A G 55 A N2 G 55 1_555 A C 62 A O2 C 62 1_555 hydrog WATSON-CRICK A G 55 A O6 G 55 1_555 A C 62 A N4 C 62 1_555 hydrog WATSON-CRICK A C 56 A N3 C 56 1_555 A G 61 A N1 G 61 1_555 hydrog WATSON-CRICK A C 56 A N4 C 56 1_555 A G 61 A O6 G 61 1_555 hydrog WATSON-CRICK A C 56 A O2 C 56 1_555 A G 61 A N2 G 61 1_555 hydrog G-A MISPAIR A G 57 A N2 G 57 1_555 A A 60 A N7 A 60 1_555 hydrog WATSON-CRICK A A 74 A N1 A 74 1_555 A U 83 A N3 U 83 1_555 hydrog WATSON-CRICK A A 74 A N6 A 74 1_555 A U 83 A O4 U 83 1_555 hydrog WATSON-CRICK A C 75 A N3 C 75 1_555 A G 82 A N1 G 82 1_555 hydrog WATSON-CRICK A C 75 A N4 C 75 1_555 A G 82 A O6 G 82 1_555 hydrog WATSON-CRICK A C 75 A O2 C 75 1_555 A G 82 A N2 G 82 1_555 hydrog WATSON-CRICK A C 76 A N3 C 76 1_555 A G 81 A N1 G 81 1_555 hydrog WATSON-CRICK A C 76 A N4 C 76 1_555 A G 81 A O6 G 81 1_555 hydrog WATSON-CRICK A C 76 A O2 C 76 1_555 A G 81 A N2 G 81 1_555 hydrog G-A MISPAIR A G 77 A N2 G 77 1_555 A A 80 A N7 A 80 1_555 hydrog WATSON-CRICK B GTP 1 B N1 GTP 1 1_555 B C 99 B N3 C 99 1_555 hydrog WATSON-CRICK B GTP 1 B N2 GTP 1 1_555 B C 99 B O2 C 99 1_555 hydrog WATSON-CRICK B GTP 1 B O6 GTP 1 1_555 B C 99 B N4 C 99 1_555 hydrog WATSON-CRICK B G 2 B N1 G 2 1_555 B C 98 B N3 C 98 1_555 hydrog WATSON-CRICK B G 2 B N2 G 2 1_555 B C 98 B O2 C 98 1_555 hydrog WATSON-CRICK B G 2 B O6 G 2 1_555 B C 98 B N4 C 98 1_555 hydrog WATSON-CRICK B C 3 B N3 C 3 1_555 B G 97 B N1 G 97 1_555 hydrog WATSON-CRICK B C 3 B N4 C 3 1_555 B G 97 B O6 G 97 1_555 hydrog WATSON-CRICK B C 3 B O2 C 3 1_555 B G 97 B N2 G 97 1_555 hydrog TYPE_28_PAIR B U 4 B N3 U 4 1_555 B G 96 B O6 G 96 1_555 hydrog TYPE_28_PAIR B U 4 B O2 U 4 1_555 B G 96 B N1 G 96 1_555 hydrog WATSON-CRICK B U 5 B N3 U 5 1_555 B A 95 B N1 A 95 1_555 hydrog WATSON-CRICK B U 5 B O4 U 5 1_555 B A 95 B N6 A 95 1_555 hydrog WATSON-CRICK B G 6 B N1 G 6 1_555 B C 94 B N3 C 94 1_555 hydrog WATSON-CRICK B G 6 B N2 G 6 1_555 B C 94 B O2 C 94 1_555 hydrog WATSON-CRICK B G 6 B O6 G 6 1_555 B C 94 B N4 C 94 1_555 hydrog WATSON-CRICK B G 7 B N1 G 7 1_555 B C 93 B N3 C 93 1_555 hydrog WATSON-CRICK B G 7 B N2 G 7 1_555 B C 93 B O2 C 93 1_555 hydrog WATSON-CRICK B G 7 B O6 G 7 1_555 B C 93 B N4 C 93 1_555 hydrog TYPE_11_PAIR B G 8 B N2 G 8 1_555 B A 92 B N7 A 92 1_555 hydrog TYPE_11_PAIR B G 8 B N3 G 8 1_555 B A 92 B N6 A 92 1_555 hydrog TYPE_7_PAIR B G 9 B N1 G 9 1_555 B G 91 B N7 G 91 1_555 hydrog TYPE_7_PAIR B G 9 B N2 G 9 1_555 B G 91 B O6 G 91 1_555 hydrog A-G MISPAIR B A 10 B N3 A 10 1_555 B G 66 B N2 G 66 1_555 hydrog REVERSED HOOGSTEEN B U 12 B N3 U 12 1_555 B A 90 B N7 A 90 1_555 hydrog REVERSED HOOGSTEEN B U 12 B O2 U 12 1_555 B A 90 B N6 A 90 1_555 hydrog TYPE_11_PAIR B A 13 B N6 A 13 1_555 B G 89 B N3 G 89 1_555 hydrog TYPE_11_PAIR B A 13 B N7 A 13 1_555 B G 89 B N2 G 89 1_555 hydrog WATSON-CRICK B G 14 B N1 G 14 1_555 B C 88 B N3 C 88 1_555 hydrog WATSON-CRICK B G 14 B N2 G 14 1_555 B C 88 B O2 C 88 1_555 hydrog WATSON-CRICK B G 14 B O6 G 14 1_555 B C 88 B N4 C 88 1_555 hydrog WATSON-CRICK B C 15 B N3 C 15 1_555 B G 87 B N1 G 87 1_555 hydrog WATSON-CRICK B C 15 B N4 C 15 1_555 B G 87 B O6 G 87 1_555 hydrog WATSON-CRICK B C 15 B O2 C 15 1_555 B G 87 B N2 G 87 1_555 hydrog WATSON-CRICK B C 16 B N3 C 16 1_555 B G 86 B N1 G 86 1_555 hydrog WATSON-CRICK B C 16 B N4 C 16 1_555 B G 86 B O6 G 86 1_555 hydrog WATSON-CRICK B C 16 B O2 C 16 1_555 B G 86 B N2 G 86 1_555 hydrog TYPE_16_PAIR B U 17 B N3 U 17 1_555 B U 85 B O4 U 85 1_555 hydrog TYPE_16_PAIR B U 17 B O2 U 17 1_555 B U 85 B N3 U 85 1_555 hydrog WATSON-CRICK B G 18 B N1 G 18 1_555 B C 35 B N3 C 35 1_555 hydrog WATSON-CRICK B G 18 B N2 G 18 1_555 B C 35 B O2 C 35 1_555 hydrog WATSON-CRICK B G 18 B O6 G 18 1_555 B C 35 B N4 C 35 1_555 hydrog WATSON-CRICK B C 19 B N3 C 19 1_555 B G 34 B N1 G 34 1_555 hydrog WATSON-CRICK B C 19 B N4 C 19 1_555 B G 34 B O6 G 34 1_555 hydrog WATSON-CRICK B C 19 B O2 C 19 1_555 B G 34 B N2 G 34 1_555 hydrog WATSON-CRICK B U 20 B N3 U 20 1_555 B A 33 B N1 A 33 1_555 hydrog WATSON-CRICK B U 20 B O4 U 20 1_555 B A 33 B N6 A 33 1_555 hydrog WATSON-CRICK B U 21 B N3 U 21 1_555 B A 32 B N1 A 32 1_555 hydrog WATSON-CRICK B U 21 B O4 U 21 1_555 B A 32 B N6 A 32 1_555 hydrog WATSON-CRICK B U 22 B N3 U 22 1_555 B A 31 B N1 A 31 1_555 hydrog WATSON-CRICK B U 22 B O4 U 22 1_555 B A 31 B N6 A 31 1_555 hydrog WATSON-CRICK B C 23 B N3 C 23 1_555 B G 30 B N1 G 30 1_555 hydrog WATSON-CRICK B C 23 B N4 C 23 1_555 B G 30 B O6 G 30 1_555 hydrog WATSON-CRICK B C 23 B O2 C 23 1_555 B G 30 B N2 G 30 1_555 hydrog WATSON-CRICK B G 24 B N1 G 24 1_555 B C 29 B N3 C 29 1_555 hydrog WATSON-CRICK B G 24 B N2 G 24 1_555 B C 29 B O2 C 29 1_555 hydrog WATSON-CRICK B G 24 B O6 G 24 1_555 B C 29 B N4 C 29 1_555 hydrog G-A MISPAIR B G 25 B N2 G 25 1_555 B A 28 B N7 A 28 1_555 hydrog WATSON-CRICK B C 37 B N3 C 37 1_555 B G 73 B N1 G 73 1_555 hydrog WATSON-CRICK B C 37 B N4 C 37 1_555 B G 73 B O6 G 73 1_555 hydrog WATSON-CRICK B C 37 B O2 C 37 1_555 B G 73 B N2 G 73 1_555 hydrog WATSON-CRICK B C 38 B N3 C 38 1_555 B G 72 B N1 G 72 1_555 hydrog WATSON-CRICK B C 38 B N4 C 38 1_555 B G 72 B O6 G 72 1_555 hydrog WATSON-CRICK B C 38 B O2 C 38 1_555 B G 72 B N2 G 72 1_555 hydrog WATSON-CRICK B U 39 B N3 U 39 1_555 B A 71 B N1 A 71 1_555 hydrog WATSON-CRICK B U 39 B O4 U 39 1_555 B A 71 B N6 A 71 1_555 hydrog WATSON-CRICK B G 40 B N1 G 40 1_555 B C 70 B N3 C 70 1_555 hydrog WATSON-CRICK B G 40 B N2 G 40 1_555 B C 70 B O2 C 70 1_555 hydrog WATSON-CRICK B G 40 B O6 G 40 1_555 B C 70 B N4 C 70 1_555 hydrog TYPE_28_PAIR B U 41 B N3 U 41 1_555 B G 69 B O6 G 69 1_555 hydrog TYPE_28_PAIR B U 41 B O2 U 41 1_555 B G 69 B N1 G 69 1_555 hydrog WATSON-CRICK B A 42 B N1 A 42 1_555 B U 68 B N3 U 68 1_555 hydrog WATSON-CRICK B A 42 B N6 A 42 1_555 B U 68 B O4 U 68 1_555 hydrog TYPE_28_PAIR B U 43 B N3 U 43 1_555 B G 67 B O6 G 67 1_555 hydrog TYPE_28_PAIR B U 43 B O2 U 43 1_555 B G 67 B N1 G 67 1_555 hydrog WATSON-CRICK B C 44 B N3 C 44 1_555 B G 66 B N1 G 66 1_555 hydrog WATSON-CRICK B C 44 B N4 C 44 1_555 B G 66 B O6 G 66 1_555 hydrog WATSON-CRICK B C 44 B O2 C 44 1_555 B G 66 B N2 G 66 1_555 hydrog WATSON-CRICK B A 45 B N1 A 45 1_555 B U 65 B N3 U 65 1_555 hydrog WATSON-CRICK B A 45 B N6 A 45 1_555 B U 65 B O4 U 65 1_555 hydrog WATSON-CRICK B C 53 B N3 C 53 1_555 B G 64 B N1 G 64 1_555 hydrog WATSON-CRICK B C 53 B N4 C 53 1_555 B G 64 B O6 G 64 1_555 hydrog WATSON-CRICK B C 53 B O2 C 53 1_555 B G 64 B N2 G 64 1_555 hydrog WATSON-CRICK B G 54 B N1 G 54 1_555 B C 63 B N3 C 63 1_555 hydrog WATSON-CRICK B G 54 B N2 G 54 1_555 B C 63 B O2 C 63 1_555 hydrog WATSON-CRICK B G 54 B O6 G 54 1_555 B C 63 B N4 C 63 1_555 hydrog WATSON-CRICK B G 55 B N1 G 55 1_555 B C 62 B N3 C 62 1_555 hydrog WATSON-CRICK B G 55 B N2 G 55 1_555 B C 62 B O2 C 62 1_555 hydrog WATSON-CRICK B G 55 B O6 G 55 1_555 B C 62 B N4 C 62 1_555 hydrog WATSON-CRICK B C 56 B N3 C 56 1_555 B G 61 B N1 G 61 1_555 hydrog WATSON-CRICK B C 56 B N4 C 56 1_555 B G 61 B O6 G 61 1_555 hydrog WATSON-CRICK B C 56 B O2 C 56 1_555 B G 61 B N2 G 61 1_555 hydrog G-A MISPAIR B G 57 B N3 G 57 1_555 B A 60 B N6 A 60 1_555 hydrog WATSON-CRICK B C 75 B N3 C 75 1_555 B G 82 B N1 G 82 1_555 hydrog WATSON-CRICK B C 75 B N4 C 75 1_555 B G 82 B O6 G 82 1_555 hydrog WATSON-CRICK B C 75 B O2 C 75 1_555 B G 82 B N2 G 82 1_555 hydrog WATSON-CRICK B C 76 B N3 C 76 1_555 B G 81 B N1 G 81 1_555 hydrog WATSON-CRICK B C 76 B N4 C 76 1_555 B G 81 B O6 G 81 1_555 hydrog WATSON-CRICK B C 76 B O2 C 76 1_555 B G 81 B N2 G 81 1_555 hydrog G-A MISPAIR B G 77 B N2 G 77 1_555 B A 80 B N7 A 80 1_555 RNA riboswitch, RNA, manganese 6N2V PDB 1 1 6N2V 1 99 6N2V 1 99 6N2V A 1 1 99 1 99 6N2V 1 99 6N2V B 1 1 99 binding site for residue MG A 102 A MG 102 Software 1 binding site for residue MG A 103 A MG 103 Software 1 binding site for residue MG A 104 A MG 104 Software 1 binding site for residue MG A 105 A MG 105 Software 1 binding site for residue MG A 106 A MG 106 Software 2 binding site for residue MG A 108 A MG 108 Software 1 binding site for residue MG A 109 A MG 109 Software 2 binding site for residue MG A 110 A MG 110 Software 2 binding site for residue MG A 111 A MG 111 Software 2 binding site for residue MG A 112 A MG 112 Software 1 binding site for residue MG A 113 A MG 113 Software 1 binding site for residue MG A 114 A MG 114 Software 3 binding site for residue MG A 116 A MG 116 Software 1 binding site for residue MG A 117 A MG 117 Software 2 binding site for residue MN A 118 A MN 118 Software 3 binding site for residue MN A 119 A MN 119 Software 1 binding site for residue SR A 120 A SR 120 Software 5 binding site for residue SR A 121 A SR 121 Software 1 binding site for residue SR A 122 A SR 122 Software 1 binding site for residue SR A 123 A SR 123 Software 4 binding site for residue SR A 124 A SR 124 Software 2 binding site for residue SR A 125 A SR 125 Software 1 binding site for residue MN B 101 B MN 101 Software 2 binding site for residue MN B 102 B MN 102 Software 6 binding site for residue MN B 103 B MN 103 Software 2 binding site for residue MG B 104 B MG 104 Software 1 binding site for residue MG B 106 B MG 106 Software 1 binding site for residue MG B 107 B MG 107 Software 1 binding site for residue MG B 108 B MG 108 Software 2 binding site for residue MG B 109 B MG 109 Software 2 binding site for residue MG B 111 B MG 111 Software 1 binding site for residue MG B 113 B MG 113 Software 2 binding site for residue MG B 115 B MG 115 Software 6 binding site for residue MG B 116 B MG 116 Software 2 binding site for residue MG B 117 B MG 117 Software 1 binding site for residue MG B 118 B MG 118 Software 1 binding site for residue MG B 119 B MG 119 Software 1 binding site for residue MG B 120 B MG 120 Software 1 binding site for residue MG B 121 B MG 121 Software 2 binding site for residue MG B 122 B MG 122 Software 3 binding site for residue MG B 123 B MG 123 Software 2 binding site for residue MG B 124 B MG 124 Software 1 binding site for residue MG B 125 B MG 125 Software 2 binding site for residue MN B 126 B MN 126 Software 1 binding site for residue MN B 127 B MN 127 Software 1 binding site for residue NA B 128 B NA 128 Software 2 binding site for residue SR B 129 B SR 129 Software 1 binding site for residue SR B 130 B SR 130 Software 2 binding site for Di-nucleotide GTP B 1 and G B 2 B GTP 1 Software 5 A G 89 A G 89 1 1_555 A G 57 A G 57 1 1_555 A A 10 A A 10 1 1_555 A G 72 A G 72 1 1_555 A A 78 A A 78 2 1_555 B G 11 B G 11 2 3_544 A C 99 A C 99 1 1_555 A G 81 A G 81 2 1_555 A MG 111 M MG 2 1_555 A G 77 A G 77 2 1_555 A A 79 A A 79 2 1_555 A A 80 A A 80 2 1_555 A MG 109 K MG 2 1_555 A G 81 A G 81 1 1_555 A G 72 A G 72 1 1_555 A A 33 A A 33 3 1_555 A G 34 A G 34 3 1_555 A HOH 204 GB HOH 3 1_555 A A 33 A A 33 1 1_555 A U 52 A U 52 2 1_555 A G 54 A G 54 2 1_555 A A 46 A A 46 3 1_555 A C 47 A C 47 3 1_555 A A 48 A A 48 3 1_555 A C 88 A C 88 1 1_555 A U 43 A U 43 5 1_555 A G 66 A G 66 5 1_555 A HOH 201 GB HOH 5 1_555 A HOH 202 GB HOH 5 1_555 A HOH 203 GB HOH 5 1_555 A U 68 A U 68 1 1_555 A G 8 A G 8 1 1_555 A G 8 A G 8 4 1_555 A G 9 A G 9 4 1_555 A A 10 A A 10 4 1_555 A A 46 A A 46 4 1_555 A C 47 A C 47 2 1_555 B HOH 203 HB HOH 2 1_555 A G 25 A G 25 1 1_555 B U 17 B U 17 2 1_555 B G 18 B G 18 2 1_555 B G 9 B G 9 6 1_555 B A 46 B A 46 6 1_555 B C 47 B C 47 6 1_555 B A 48 B A 48 6 1_555 B C 51 B C 51 6 1_555 B U 52 B U 52 6 1_555 B G 57 B G 57 2 1_555 B MG 122 WA MG 2 1_555 B G 89 B G 89 1 1_555 B C 47 B C 47 1 1_555 B A 10 B A 10 1 1_555 B C 84 B C 84 2 1_555 B MG 111 LA MG 2 1_555 B U 5 B U 5 2 1_555 B G 6 B G 6 2 1_555 B MG 108 IA MG 1 1_555 A GTP 1 A GTP 1 2 3_555 B C 99 B C 99 2 1_555 B G 9 B G 9 6 1_555 B A 46 B A 46 6 1_555 B C 51 B C 51 6 1_555 B U 52 B U 52 6 1_555 B HOH 201 HB HOH 6 1_555 B HOH 202 HB HOH 6 1_555 B U 41 B U 41 2 1_555 B U 68 B U 68 2 1_555 B G 81 B G 81 1 1_555 B G 73 B G 73 1 1_555 B G 72 B G 72 1 1_555 B C 63 B C 63 1 1_555 B G 54 B G 54 2 1_555 B MG 123 XA MG 2 1_555 B C 56 B C 56 3 1_555 B G 57 B G 57 3 1_555 B MN 103 DA MN 3 1_555 B G 55 B G 55 2 1_555 B MG 121 VA MG 2 1_555 B G 54 B G 54 1 1_555 B A 32 B A 32 2 1_555 B A 33 B A 33 2 1_555 B G 25 B G 25 1 1_555 B U 83 B U 83 1 1_555 B A 13 B A 13 2 1_555 B G 14 B G 14 2 1_555 B G 8 B G 8 1 1_555 B U 43 B U 43 2 1_555 B G 66 B G 66 2 1_555 A GTP 1 A GTP 1 5 3_555 A C 99 A C 99 5 3_555 B C 3 B C 3 5 1_555 B C 98 B C 98 5 1_555 B C 99 B C 99 5 1_555 19 P 21 21 21