0.012301
0.000000
0.000000
0.000000
0.011742
0.000000
0.000000
0.000000
0.010815
0.00000
0.00000
0.00000
0000-0002-9596-1036
Price, I.R.
0000-0001-5957-7822
Ke, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
81.296
85.167
92.463
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Mn 2
54.938
MANGANESE (II) ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
Sr 2
87.620
STRONTIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
C
N
125
R
C
N
126
N
O
N
127
S
C
N
128
N
O
N
129
R
C
N
130
N
O
N
131
R
C
Y
132
N
N
Y
133
N
C
Y
134
N
N
Y
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
C
N
140
N
N
N
141
N
N
Y
142
N
C
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
MG
N
163
N
MN
N
164
N
NA
N
165
N
SR
N
166
N
O
N
167
N
P
N
168
N
O
N
169
N
O
N
170
N
O
N
171
N
C
N
172
R
C
N
173
N
O
N
174
S
C
N
175
N
O
N
176
R
C
N
177
N
O
N
178
R
C
N
179
N
N
N
180
N
C
N
181
N
O
N
182
N
N
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
UK
Nat Commun
2041-1723
10
4304
4304
10.1038/s41467-019-12230-5
31541094
Local-to-global signal transduction at the core of a Mn2+sensing riboswitch.
2019
0000-0003-1597-2622
0000-0002-9596-1036
0000-0003-4599-2640
0000-0001-6558-6186
0000-0002-7137-8225
0000-0001-5957-7822
0000-0002-7301-1275
10.2210/pdb6n2v/pdb
pdb_00006n2v
100
1
N
PIXEL
2014-10-16
DECTRIS PILATUS 6M-F
SINGLE WAVELENGTH
M
x-ray
1
0.769
1.0
24-ID-C
APS
0.769
SYNCHROTRON
APS BEAMLINE 24-ID-C
32281.131
X. oryzae Mn riboswitch optimized construct
2
syn
polymer
24.305
MAGNESIUM ION
39
syn
non-polymer
54.938
MANGANESE (II) ION
7
syn
non-polymer
87.620
STRONTIUM ION
9
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
7
nat
water
no
yes
(GTP)GCUUGGGGAGUAGCCUGCUUUCGGAAACGAAAGCGCCUGUAUCAACAUACUCGGCGAAAGCCGUGGUGCAGGACC
GAAAGGUCUGGCGAGACCAGGCC
GGCUUGGGGAGUAGCCUGCUUUCGGAAACGAAAGCGCCUGUAUCAACAUACUCGGCGAAAGCCGUGGUGCAGGACCGAAA
GGUCUGGCGAGACCAGGCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.48
50.38
VAPOR DIFFUSION, HANGING DROP
0.2 mM RNA in 10 mM Na Cacodylate pH 7, 50 mM NaCl, 10 mM MgCl2, mixed in a 1:1 ratio with 10% MPD, 40 mM Na Cacodylate pH 7, 12 mM spermine tetrahydrochloride, 80 mM SrCl2, 20 mM MgCl2.
291
0.725
1
19
A
1
A
99
-5.945
A_GTP1:C99_A
1
8.721
0.129
0.499
-0.554
9.643
1
19
A
2
A
98
8.241
A_G2:C98_A
2
-7.712
-0.863
0.246
0.152
6.579
1
19
A
3
A
97
-3.332
A_C3:G97_A
3
-13.865
0.395
0.057
-0.154
-3.081
1
28
A
4
A
96
-1.248
A_U4:G96_A
4
-13.597
2.459
0.134
-0.519
1.296
1
20
A
5
A
95
5.977
A_U5:A95_A
5
-7.474
-0.453
0.128
-0.047
5.967
1
19
A
6
A
94
-0.291
A_G6:C94_A
6
-5.103
0.043
-0.179
-0.131
-19.827
1
19
A
7
A
93
7.281
A_G7:C93_A
7
-20.423
-0.017
-1.002
-0.169
-23.319
10
11
A
8
A
92
0.360
A_G8:A92_A
8
-10.378
7.126
0.102
-4.006
4.119
4
7
A
9
A
91
-111.150
A_G9:G91_A
9
-13.631
5.377
-0.219
0.127
2.008
4
24
A
12
A
90
-104.485
A_U12:A90_A
10
-14.734
4.674
-0.518
-1.872
-1.729
9
11
A
13
A
89
-1.812
A_A13:G89_A
11
5.762
-6.975
0.024
-4.003
9.082
1
19
A
14
A
88
1.477
A_G14:C88_A
12
1.034
-0.363
0.231
-0.116
14.657
1
19
A
15
A
87
0.944
A_C15:G87_A
13
-5.698
0.103
-0.465
-0.078
3.511
1
19
A
16
A
86
4.260
A_C16:G86_A
14
-3.357
0.209
-0.520
-0.147
16.780
1
16
A
17
A
85
13.511
A_U17:U85_A
15
-5.811
2.338
0.032
-1.710
2.540
1
19
A
18
A
35
3.248
A_G18:C35_A
16
-14.738
-0.598
0.119
0.150
8.791
1
19
A
19
A
34
13.461
A_C19:G34_A
17
-17.412
-0.516
0.320
0.220
5.859
1
20
A
20
A
33
9.352
A_U20:A33_A
18
-8.275
-1.022
-0.111
0.071
4.430
1
20
A
21
A
32
-4.770
A_U21:A32_A
19
-12.452
0.378
-0.695
-0.178
-2.360
1
20
A
22
A
31
-3.507
A_U22:A31_A
20
-10.607
0.132
0.035
-0.018
5.678
1
19
A
23
A
30
-1.283
A_C23:G30_A
21
-8.171
0.074
0.030
-0.105
3.641
1
19
A
24
A
29
0.507
A_G24:C29_A
22
-0.805
0.345
-0.347
-0.117
25.108
A
25
A
28
-40.648
A_G25:A28_A
23
-2.090
7.640
0.742
-5.182
-38.792
A
10
B
49
-135.087
A_A10:U49_B
24
-32.343
0.245
0.882
5.011
-20.683
10
A
60
A
57
-14.094
A_A60:G57_A
25
10.971
-6.900
0.703
-5.141
0.393
1
19
A
61
A
56
1.482
A_G61:C56_A
26
-4.197
-0.697
-0.307
-0.230
6.011
1
19
A
62
A
55
0.102
A_C62:G55_A
27
-7.982
-0.181
-0.308
-0.097
6.727
1
19
A
63
A
54
1.824
A_C63:G54_A
28
-7.812
-0.136
-0.241
-0.075
-5.159
1
19
A
64
A
53
2.560
A_G64:C53_A
29
-15.404
0.077
-0.384
-0.185
2.502
1
20
A
65
A
45
-3.746
A_U65:A45_A
30
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5
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B_G77:A80_B
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A
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A
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AA_GTP1G2:C98C99_AA
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A
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3
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A
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AA_G2C3:G97C98_AA
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A
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A
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AA_C3U4:G96G97_AA
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A
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A
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AA_U4U5:A95G96_AA
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A
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A
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AA_U5G6:C94A95_AA
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1.692
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A
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7
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A
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AA_G6G7:C93C94_AA
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4.959
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A
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A
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AA_G7G8:A92C93_AA
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A
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A
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AA_G8G9:G91A92_AA
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A
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12
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A
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AA_G9U12:A90G91_AA
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A
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A
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AA_U12A13:G89A90_AA
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A
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A
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AA_A13G14:C88G89_AA
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A
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A
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AA_G14C15:G87C88_AA
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3.539
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A
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A
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AA_C15C16:G86G87_AA
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A
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A
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AA_C16U17:U85G86_AA
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A
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AA_U17G18:C35U85_AA
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A
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A
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AA_G18C19:G34C35_AA
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A
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A
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33
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AA_C19U20:A33G34_AA
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A
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A
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32
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AA_U20U21:A32A33_AA
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1.394
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A
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A
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31
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AA_U21U22:A31A32_AA
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A
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23
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A
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30
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AA_U22C23:G30A31_AA
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-1.703
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A
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24
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A
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3.348
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AA_C23G24:C29G30_AA
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0.927
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A
A
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25
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A
A
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AA_G24G25:A28C29_AA
22
-2.257
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55.226
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3.531
2.983
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A
A
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61
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A
A
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AA_A60G61:C56G57_AA
23
8.288
-10.226
47.208
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2.913
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A
A
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62
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A
A
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55
3.183
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AA_G61C62:G55C56_AA
24
-1.182
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34.897
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A
A
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63
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A
A
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54
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AA_C62C63:G54G55_AA
25
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31.962
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A
A
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64
22.589
A
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53
3.589
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AA_C63G64:C53G54_AA
26
0.934
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31.826
-4.942
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A
A
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65
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A
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45
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AA_G64U65:A45C53_AA
27
-2.747
4.793
32.845
-4.808
0.692
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A
A
65
66
36.397
A
A
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44
3.465
25.851
1.076
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AA_U65G66:C44A45_AA
28
1.430
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36.261
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A
A
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67
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A
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43
2.719
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AA_G66G67:U43C44_AA
29
-8.546
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A
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68
2.623
A
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42
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AA_G67U68:A42U43_AA
30
0.313
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35.056
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A
A
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14.743
A
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41
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AA_U68G69:U41A42_AA
31
-6.065
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25.255
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A
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A
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40
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AA_G69C70:G40U41_AA
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0.682
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A
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71
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A
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39
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AA_C70A71:U39G40_AA
33
0.342
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35.611
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A
A
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72
17.031
A
A
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38
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AA_A71G72:C38U39_AA
34
3.886
-7.487
29.062
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2.634
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A
A
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73
16.375
A
A
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37
3.302
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0.083
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AA_G72G73:C37C38_AA
35
-1.201
2.431
27.830
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73.945
A
A
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74
4.151
A
A
37
83
2.860
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3.483
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AA_G73A74:U83C37_AA
36
-26.013
21.989
69.685
-1.481
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A
A
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75
12.088
A
A
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82
3.468
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AA_A74C75:G82U83_AA
37
3.814
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40.072
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A
A
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76
23.730
A
A
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81
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AA_C75C76:G81G82_AA
38
-2.118
3.824
30.335
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3.020
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A
A
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77
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A
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80
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AA_C76G77:A80G81_AA
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-8.224
9.083
53.281
-1.371
2.630
3.024
43.017
B
B
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2
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B
B
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BB_GTP1G2:C98C99_BB
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-9.235
12.748
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B
B
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3
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B
B
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3.151
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BB_G2C3:G97C98_BB
41
-0.874
1.734
29.201
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0.213
2.983
37.657
B
B
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4
14.838
B
B
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3.537
9.466
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BB_C3U4:G96G97_BB
42
3.823
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36.295
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0.819
1.921
29.084
B
B
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5
27.069
B
B
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95
2.992
13.121
0.381
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BB_U4U5:A95G96_BB
43
0.627
-1.293
26.006
-5.740
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1.818
33.917
B
B
5
6
31.772
B
B
95
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3.154
17.620
-0.158
-1.675
BB_U5G6:C94A95_BB
44
4.205
-7.582
28.795
-5.210
0.830
2.891
33.399
B
B
6
7
13.809
B
B
94
93
3.402
7.865
0.159
-1.819
BB_G6G7:C93C94_BB
45
-0.753
1.322
32.477
-4.436
-0.398
3.358
65.100
B
B
7
8
10.250
B
B
93
92
3.507
10.980
-0.114
-0.623
BB_G7G8:A92C93_BB
46
4.835
-4.513
64.105
-1.063
0.319
3.341
-16.921
B
B
8
9
-6.798
B
B
92
91
3.026
1.885
-1.434
-0.421
BB_G8G9:G91A92_BB
47
9.313
33.578
-14.018
0.120
1.604
3.962
39.610
B
B
9
12
-3.412
B
B
91
90
3.273
-2.277
2.715
-0.836
BB_G9U12:A90G91_BB
48
11.952
-17.906
37.767
-0.931
-2.419
2.346
-12.905
B
B
12
13
-27.565
B
B
90
89
3.439
5.916
5.095
-0.889
BB_U12A13:G89A90_BB
49
2.638
12.289
-11.168
-2.350
25.478
3.178
55.455
B
B
13
14
2.299
B
B
89
88
3.233
2.139
0.737
-0.726
BB_A13G14:C88G89_BB
50
-2.117
2.276
55.380
-0.903
-0.913
3.262
30.628
B
B
14
15
3.229
B
B
88
87
3.362
1.701
-0.503
-2.419
BB_G14C15:G87C88_BB
51
-3.569
6.774
30.378
-4.920
0.237
2.709
34.633
B
B
15
16
13.234
B
B
87
86
3.178
7.814
0.227
-1.802
BB_C15C16:G86G87_BB
52
0.458
-0.776
33.763
-4.123
-0.317
2.213
34.030
B
B
16
17
11.706
B
B
86
85
2.567
6.774
0.300
-1.119
BB_C16U17:U85G86_BB
53
-5.963
10.305
32.845
-2.716
-1.221
1.296
45.587
B
B
17
18
22.444
B
B
85
35
2.864
16.963
0.918
-3.491
BB_U17G18:C35U85_BB
54
-6.052
8.007
42.054
-5.495
-1.538
3.042
34.167
B
B
18
19
4.326
B
B
35
34
3.231
2.538
-0.819
-1.744
BB_G18C19:G34C35_BB
55
2.102
-3.582
34.013
-3.353
1.713
3.171
32.981
B
B
19
20
5.265
B
B
34
33
3.307
2.984
0.277
-1.497
BB_C19U20:A33G34_BB
56
1.381
-2.437
32.821
-3.140
-0.254
2.371
30.172
B
B
20
21
18.625
B
B
33
32
2.914
9.485
-0.219
-1.027
BB_U20U21:A32A33_BB
57
5.373
-10.551
28.176
-3.590
1.336
2.673
34.559
B
B
21
22
19.910
B
B
32
31
3.397
11.611
0.247
-1.652
BB_U21U22:A31A32_BB
58
0.357
-0.612
32.605
-4.498
-0.363
2.918
33.720
B
B
22
23
7.633
B
B
31
30
3.118
4.412
-0.425
-1.537
BB_U22C23:G30A31_BB
59
-2.187
3.784
33.369
-3.314
0.403
2.066
35.222
B
B
23
24
26.109
B
B
30
29
3.198
15.290
0.099
-1.963
BB_C23G24:C29G30_BB
60
2.496
-4.262
31.729
-5.177
0.153
2.641
57.683
B
B
24
25
5.466
B
B
29
28
2.522
5.264
-4.202
-1.575
BB_G24G25:A28C29_BB
61
-3.972
4.124
57.337
-1.856
4.187
3.339
34.078
B
B
60
61
9.452
B
B
57
56
3.392
5.498
-0.130
0.023
BB_A60G61:C56G57_BB
62
-4.864
8.361
33.301
-0.871
-0.584
2.916
34.134
B
B
61
62
10.772
B
B
56
55
3.251
6.288
-0.087
-1.557
BB_G61C62:G55C56_BB
63
1.197
-2.051
33.546
-3.601
0.329
3.021
33.318
B
B
62
63
9.038
B
B
55
54
3.328
5.162
0.519
-1.715
BB_C62C63:G54G55_BB
64
-0.692
1.212
32.920
-3.829
-1.018
2.949
29.913
B
B
63
64
12.976
B
B
54
53
3.457
6.636
-0.057
-1.880
BB_C63G64:C53G54_BB
65
2.635
-5.152
29.067
-5.007
0.652
2.984
32.147
B
B
64
65
5.911
B
B
53
45
3.132
3.247
-0.525
-1.776
BB_G64U65:A45C53_BB
66
-6.395
11.641
31.357
-3.757
-0.136
2.505
41.609
B
B
65
66
29.101
B
B
45
44
3.488
19.892
1.090
-1.340
BB_U65G66:C44A45_BB
67
1.198
-1.753
36.714
-3.950
-1.411
2.184
29.441
B
B
66
67
22.533
B
B
44
43
2.834
11.048
-0.736
-1.455
BB_G66G67:U43C44_BB
68
-7.579
15.458
26.277
-4.785
0.131
3.044
35.976
B
B
67
68
2.148
B
B
43
42
3.082
1.326
-0.367
-1.510
BB_G67U68:A42U43_BB
69
-2.530
4.100
35.866
-2.622
0.256
2.164
25.077
B
B
68
69
19.539
B
B
42
41
2.849
8.314
0.078
-1.554
BB_U68G69:U41A42_BB
70
-2.390
5.617
23.560
-5.523
-0.740
3.107
44.560
B
B
69
70
8.025
B
B
41
40
3.320
6.067
0.184
-1.462
BB_G69C70:G40U41_BB
71
1.340
-1.772
44.147
-2.479
-0.121
2.672
28.337
B
B
70
71
17.602
B
B
40
39
3.315
8.477
0.373
-1.759
BB_C70A71:U39G40_BB
72
2.703
-5.613
26.931
-5.434
-0.175
3.104
32.957
B
B
71
72
12.806
B
B
39
38
3.478
7.207
0.580
-1.483
BB_A71G72:C38U39_BB
73
1.440
-2.559
32.149
-3.864
-0.773
2.383
35.749
B
B
72
73
22.955
B
B
38
37
3.400
13.737
-0.658
-1.906
BB_G72G73:C37C38_BB
74
2.739
-4.578
32.973
-4.933
1.436
4.790
87.130
B
B
73
75
24.553
B
B
37
82
6.521
32.977
1.183
-2.990
BB_G73C75:G82C37_BB
75
-23.834
17.746
78.788
-3.519
-1.834
3.048
34.010
B
B
75
76
15.299
B
B
82
81
3.515
8.851
0.028
-1.388
BB_C75C76:G81G82_BB
76
-0.525
0.908
32.866
-3.817
-0.133
2.628
53.422
B
B
76
77
13.331
B
B
81
80
2.799
11.891
-2.937
-1.339
BB_C76G77:A80G81_BB
77
-3.349
3.754
52.077
-2.122
3.089
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2019-10-02
1
1
2020-01-01
1
2
2023-10-11
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM116632
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM118174
N
RCSB
Y
RCSB
2018-11-14
REL
REL
MN
MN
SUBJECT OF INVESTIGATION
MG
MAGNESIUM ION
MN
MANGANESE (II) ION
SR
STRONTIUM ION
NA
SODIUM ION
HOH
water
347
Xanthomonas oryzae
sample
1
99
4Y1I
PDB
experimental model
MG
15
2
MG
MG
101
A
MG
16
2
MG
MG
102
A
MG
21
2
MG
MG
103
A
MG
22
2
MG
MG
104
A
MG
23
2
MG
MG
105
A
MG
24
2
MG
MG
106
A
MG
31
2
MG
MG
107
A
MG
33
2
MG
MG
108
A
MG
35
2
MG
MG
109
A
MG
36
2
MG
MG
110
A
MG
37
2
MG
MG
111
A
MG
38
2
MG
MG
112
A
MG
39
2
MG
MG
113
A
MG
50
2
MG
MG
114
A
MG
51
2
MG
MG
115
A
MG
52
2
MG
MG
116
A
MG
56
2
MG
MG
117
A
MN
5
3
MN
MN
118
A
MN
7
3
MN
MN
119
A
SR
1
4
SR
SR
120
A
SR
2
4
SR
SR
121
A
SR
3
4
SR
SR
122
A
SR
5
4
SR
SR
123
A
SR
6
4
SR
SR
124
A
SR
8
4
SR
SR
125
A
MN
10
3
MN
MN
101
B
MN
11
3
MN
MN
102
B
MN
12
3
MN
MN
103
B
MG
6
2
MG
MG
104
B
MG
10
2
MG
MG
105
B
MG
13
2
MG
MG
106
B
MG
19
2
MG
MG
107
B
MG
20
2
MG
MG
108
B
MG
25
2
MG
MG
109
B
MG
28
2
MG
MG
110
B
MG
30
2
MG
MG
111
B
MG
34
2
MG
MG
112
B
MG
40
2
MG
MG
113
B
MG
41
2
MG
MG
114
B
MG
42
2
MG
MG
115
B
MG
43
2
MG
MG
116
B
MG
44
2
MG
MG
117
B
MG
45
2
MG
MG
118
B
MG
46
2
MG
MG
119
B
MG
47
2
MG
MG
120
B
MG
48
2
MG
MG
121
B
MG
49
2
MG
MG
122
B
MG
53
2
MG
MG
123
B
MG
54
2
MG
MG
124
B
MG
55
2
MG
MG
125
B
MN
3
3
MN
MN
126
B
MN
6
3
MN
MN
127
B
NA
1
5
NA
NA
128
B
SR
4
4
SR
SR
129
B
SR
7
4
SR
SR
130
B
SR
9
4
SR
SR
131
B
HOH
6
6
HOH
HOH
201
A
HOH
5
6
HOH
HOH
202
A
HOH
7
6
HOH
HOH
203
A
HOH
4
6
HOH
HOH
204
A
HOH
2
6
HOH
HOH
201
B
HOH
1
6
HOH
HOH
202
B
HOH
3
6
HOH
HOH
203
B
GTP
1
n
1
GTP
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
U
4
n
4
U
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
G
7
n
7
G
7
A
G
8
n
8
G
8
A
G
9
n
9
G
9
A
A
10
n
10
A
10
A
G
11
n
11
G
11
A
U
12
n
12
U
12
A
A
13
n
13
A
13
A
G
14
n
14
G
14
A
C
15
n
15
C
15
A
C
16
n
16
C
16
A
U
17
n
17
U
17
A
G
18
n
18
G
18
A
C
19
n
19
C
19
A
U
20
n
20
U
20
A
U
21
n
21
U
21
A
U
22
n
22
U
22
A
C
23
n
23
C
23
A
G
24
n
24
G
24
A
G
25
n
25
G
25
A
A
26
n
26
A
26
A
A
27
n
27
A
27
A
A
28
n
28
A
28
A
C
29
n
29
C
29
A
G
30
n
30
G
30
A
A
31
n
31
A
31
A
A
32
n
32
A
32
A
A
33
n
33
A
33
A
G
34
n
34
G
34
A
C
35
n
35
C
35
A
G
36
n
36
G
36
A
C
37
n
37
C
37
A
C
38
n
38
C
38
A
U
39
n
39
U
39
A
G
40
n
40
G
40
A
U
41
n
41
U
41
A
A
42
n
42
A
42
A
U
43
n
43
U
43
A
C
44
n
44
C
44
A
A
45
n
45
A
45
A
A
46
n
46
A
46
A
C
47
n
47
C
47
A
A
48
n
48
A
48
A
U
49
n
49
U
49
A
A
50
n
50
A
50
A
C
51
n
51
C
51
A
U
52
n
52
U
52
A
C
53
n
53
C
53
A
G
54
n
54
G
54
A
G
55
n
55
G
55
A
C
56
n
56
C
56
A
G
57
n
57
G
57
A
A
58
n
58
A
58
A
A
59
n
59
A
59
A
A
60
n
60
A
60
A
G
61
n
61
G
61
A
C
62
n
62
C
62
A
C
63
n
63
C
63
A
G
64
n
64
G
64
A
U
65
n
65
U
65
A
G
66
n
66
G
66
A
G
67
n
67
G
67
A
U
68
n
68
U
68
A
G
69
n
69
G
69
A
C
70
n
70
C
70
A
A
71
n
71
A
71
A
G
72
n
72
G
72
A
G
73
n
73
G
73
A
A
74
n
74
A
74
A
C
75
n
75
C
75
A
C
76
n
76
C
76
A
G
77
n
77
G
77
A
A
78
n
78
A
78
A
A
79
n
79
A
79
A
A
80
n
80
A
80
A
G
81
n
81
G
81
A
G
82
n
82
G
82
A
U
83
n
83
U
83
A
C
84
n
84
C
84
A
U
85
n
85
U
85
A
G
86
n
86
G
86
A
G
87
n
87
G
87
A
C
88
n
88
C
88
A
G
89
n
89
G
89
A
A
90
n
90
A
90
A
G
91
n
91
G
91
A
A
92
n
92
A
92
A
C
93
n
93
C
93
A
C
94
n
94
C
94
A
A
95
n
95
A
95
A
G
96
n
96
G
96
A
G
97
n
97
G
97
A
C
98
n
98
C
98
A
C
99
n
99
C
99
A
GTP
1
n
1
GTP
1
B
G
2
n
2
G
2
B
C
3
n
3
C
3
B
U
4
n
4
U
4
B
U
5
n
5
U
5
B
G
6
n
6
G
6
B
G
7
n
7
G
7
B
G
8
n
8
G
8
B
G
9
n
9
G
9
B
A
10
n
10
A
10
B
G
11
n
11
G
11
B
U
12
n
12
U
12
B
A
13
n
13
A
13
B
G
14
n
14
G
14
B
C
15
n
15
C
15
B
C
16
n
16
C
16
B
U
17
n
17
U
17
B
G
18
n
18
G
18
B
C
19
n
19
C
19
B
U
20
n
20
U
20
B
U
21
n
21
U
21
B
U
22
n
22
U
22
B
C
23
n
23
C
23
B
G
24
n
24
G
24
B
G
25
n
25
G
25
B
A
26
n
26
A
26
B
A
27
n
27
A
27
B
A
28
n
28
A
28
B
C
29
n
29
C
29
B
G
30
n
30
G
30
B
A
31
n
31
A
31
B
A
32
n
32
A
32
B
A
33
n
33
A
33
B
G
34
n
34
G
34
B
C
35
n
35
C
35
B
G
36
n
36
G
36
B
C
37
n
37
C
37
B
C
38
n
38
C
38
B
U
39
n
39
U
39
B
G
40
n
40
G
40
B
U
41
n
41
U
41
B
A
42
n
42
A
42
B
U
43
n
43
U
43
B
C
44
n
44
C
44
B
A
45
n
45
A
45
B
A
46
n
46
A
46
B
C
47
n
47
C
47
B
A
48
n
48
A
48
B
U
49
n
49
U
49
B
A
50
n
50
A
50
B
C
51
n
51
C
51
B
U
52
n
52
U
52
B
C
53
n
53
C
53
B
G
54
n
54
G
54
B
G
55
n
55
G
55
B
C
56
n
56
C
56
B
G
57
n
57
G
57
B
A
58
n
58
A
58
B
A
59
n
59
A
59
B
A
60
n
60
A
60
B
G
61
n
61
G
61
B
C
62
n
62
C
62
B
C
63
n
63
C
63
B
G
64
n
64
G
64
B
U
65
n
65
U
65
B
G
66
n
66
G
66
B
G
67
n
67
G
67
B
U
68
n
68
U
68
B
G
69
n
69
G
69
B
C
70
n
70
C
70
B
A
71
n
71
A
71
B
G
72
n
72
G
72
B
G
73
n
73
G
73
B
A
74
n
74
A
74
B
C
75
n
75
C
75
B
C
76
n
76
C
76
B
G
77
n
77
G
77
B
A
78
n
78
A
78
B
A
79
n
79
A
79
B
A
80
n
80
A
80
B
G
81
n
81
G
81
B
G
82
n
82
G
82
B
U
83
n
83
U
83
B
C
84
n
84
C
84
B
U
85
n
85
U
85
B
G
86
n
86
G
86
B
G
87
n
87
G
87
B
C
88
n
88
C
88
B
G
89
n
89
G
89
B
A
90
n
90
A
90
B
G
91
n
91
G
91
B
A
92
n
92
A
92
B
C
93
n
93
C
93
B
C
94
n
94
C
94
B
A
95
n
95
A
95
B
G
96
n
96
G
96
B
G
97
n
97
G
97
B
C
98
n
98
C
98
B
C
99
n
99
C
99
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
Previous work established this as a Mn(II)-binding RNA. Current smFRET also confirms Mn(II) binding to the riboswitch.
fluorescence resonance energy transfer
A
G
8
A
OP1
G
8
1_555
A
SR
123
Y
SR
SR
1_555
A
G
9
A
OP2
G
9
1_555
95.9
A
G
8
A
OP1
G
8
1_555
A
SR
123
Y
SR
SR
1_555
A
A
10
A
OP1
A
10
1_555
92.2
A
G
9
A
OP2
G
9
1_555
A
SR
123
Y
SR
SR
1_555
A
A
10
A
OP1
A
10
1_555
82.2
A
G
8
A
OP1
G
8
1_555
A
SR
123
Y
SR
SR
1_555
A
A
46
A
OP1
A
46
1_555
154.9
A
G
9
A
OP2
G
9
1_555
A
SR
123
Y
SR
SR
1_555
A
A
46
A
OP1
A
46
1_555
104.3
A
A
10
A
OP1
A
10
1_555
A
SR
123
Y
SR
SR
1_555
A
A
46
A
OP1
A
46
1_555
76.3
A
G
34
A
O6
G
34
1_555
A
MG
114
P
MG
MG
1_555
A
HOH
204
GB
O
HOH
1_555
130.2
A
U
43
A
O4
U
43
1_555
A
SR
120
V
SR
SR
1_555
A
G
66
A
O6
G
66
1_555
89.9
A
U
43
A
O4
U
43
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
201
GB
O
HOH
1_555
68.4
A
G
66
A
O6
G
66
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
201
GB
O
HOH
1_555
80.5
A
U
43
A
O4
U
43
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
202
GB
O
HOH
1_555
86.6
A
G
66
A
O6
G
66
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
202
GB
O
HOH
1_555
161.3
A
HOH
201
GB
O
HOH
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
202
GB
O
HOH
1_555
81.2
A
U
43
A
O4
U
43
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
203
GB
O
HOH
1_555
171.8
A
G
66
A
O6
G
66
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
203
GB
O
HOH
1_555
91.7
A
HOH
201
GB
O
HOH
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
203
GB
O
HOH
1_555
104.0
A
HOH
202
GB
O
HOH
1_555
A
SR
120
V
SR
SR
1_555
A
HOH
203
GB
O
HOH
1_555
89.4
A
A
46
A
OP2
A
46
1_555
A
MN
118
T
MN
MN
1_555
A
C
47
A
OP2
C
47
1_555
89.9
A
A
46
A
OP2
A
46
1_555
A
MN
118
T
MN
MN
1_555
A
A
48
A
N1
A
48
1_555
88.7
A
C
47
A
OP2
C
47
1_555
A
MN
118
T
MN
MN
1_555
A
A
48
A
N1
A
48
1_555
86.2
A
C
47
A
O2
C
47
1_555
A
SR
124
Z
SR
SR
1_555
B
HOH
203
HB
O
HOH
1_555
108.1
A
G
77
A
O6
G
77
1_555
A
MG
110
L
MG
MG
1_555
A
A
79
A
OP1
A
79
1_555
112.7
A
G
81
A
OP2
G
81
1_555
A
MG
112
N
MG
MG
1_555
A
G
81
A
O5'
G
81
1_555
57.2
B
G
9
B
OP1
G
9
1_555
B
MN
102
CA
MN
MN
1_555
B
A
46
B
OP2
A
46
1_555
90.3
B
G
9
B
OP1
G
9
1_555
B
MN
102
CA
MN
MN
1_555
B
C
47
B
OP2
C
47
1_555
80.7
B
A
46
B
OP2
A
46
1_555
B
MN
102
CA
MN
MN
1_555
B
C
47
B
OP2
C
47
1_555
75.4
B
G
9
B
OP1
G
9
1_555
B
MN
102
CA
MN
MN
1_555
B
A
48
B
N7
A
48
1_555
154.8
B
A
46
B
OP2
A
46
1_555
B
MN
102
CA
MN
MN
1_555
B
A
48
B
N7
A
48
1_555
89.0
B
C
47
B
OP2
C
47
1_555
B
MN
102
CA
MN
MN
1_555
B
A
48
B
N7
A
48
1_555
74.8
B
G
9
B
OP1
G
9
1_555
B
MN
102
CA
MN
MN
1_555
B
C
51
B
OP1
C
51
1_555
78.0
B
A
46
B
OP2
A
46
1_555
B
MN
102
CA
MN
MN
1_555
B
C
51
B
OP1
C
51
1_555
166.1
B
C
47
B
OP2
C
47
1_555
B
MN
102
CA
MN
MN
1_555
B
C
51
B
OP1
C
51
1_555
95.1
B
A
48
B
N7
A
48
1_555
B
MN
102
CA
MN
MN
1_555
B
C
51
B
OP1
C
51
1_555
98.3
B
G
9
B
OP1
G
9
1_555
B
MN
102
CA
MN
MN
1_555
B
U
52
B
OP2
U
52
1_555
109.2
B
A
46
B
OP2
A
46
1_555
B
MN
102
CA
MN
MN
1_555
B
U
52
B
OP2
U
52
1_555
101.5
B
C
47
B
OP2
C
47
1_555
B
MN
102
CA
MN
MN
1_555
B
U
52
B
OP2
U
52
1_555
169.7
B
A
48
B
N7
A
48
1_555
B
MN
102
CA
MN
MN
1_555
B
U
52
B
OP2
U
52
1_555
95.6
B
C
51
B
OP1
C
51
1_555
B
MN
102
CA
MN
MN
1_555
B
U
52
B
OP2
U
52
1_555
89.6
B
G
9
B
OP2
G
9
1_555
B
MG
115
PA
MG
MG
1_555
B
A
46
B
OP1
A
46
1_555
92.5
B
G
9
B
OP2
G
9
1_555
B
MG
115
PA
MG
MG
1_555
B
U
52
B
OP1
U
52
1_555
100.5
B
A
46
B
OP1
A
46
1_555
B
MG
115
PA
MG
MG
1_555
B
U
52
B
OP1
U
52
1_555
82.5
B
G
9
B
OP2
G
9
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
201
HB
O
HOH
1_555
98.7
B
A
46
B
OP1
A
46
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
201
HB
O
HOH
1_555
97.3
B
U
52
B
OP1
U
52
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
201
HB
O
HOH
1_555
160.8
B
G
9
B
OP2
G
9
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
202
HB
O
HOH
1_555
154.9
B
A
46
B
OP1
A
46
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
202
HB
O
HOH
1_555
112.6
B
U
52
B
OP1
U
52
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
202
HB
O
HOH
1_555
85.4
B
HOH
201
HB
O
HOH
1_555
B
MG
115
PA
MG
MG
1_555
B
HOH
202
HB
O
HOH
1_555
77.0
B
A
32
B
OP1
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
B
A
32
B
OP2
A
32
1_555
56.2
B
A
32
B
OP1
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
B
A
32
B
O5'
A
32
1_555
66.4
B
A
32
B
OP2
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
B
A
32
B
O5'
A
32
1_555
54.8
B
A
32
B
OP1
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
B
A
33
B
OP2
A
33
1_555
159.7
B
A
32
B
OP2
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
B
A
33
B
OP2
A
33
1_555
125.0
B
A
32
B
O5'
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
B
A
33
B
OP2
A
33
1_555
97.1
B
U
43
B
O4
U
43
1_555
B
SR
130
EB
SR
SR
1_555
B
G
66
B
O6
G
66
1_555
91.6
B
C
99
B
O3'
C
99
1_555
B
MG
113
NA
MG
MG
1_555
B
C
99
B
O2'
C
99
1_555
79.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-32.23
1.20
119.70
87.47
A
A
A
C3'
O3'
P
GTP
GTP
G
1
1
2
Y
1
-29.49
1.90
104.00
74.51
A
A
A
O3'
P
O5'
GTP
G
G
1
2
2
Y
1
46.56
1.10
110.50
157.06
A
A
A
O3'
P
OP2
GTP
G
G
1
2
2
Y
1
-22.44
2.20
105.20
82.76
A
A
A
O3'
P
OP1
GTP
G
G
1
2
2
Y
1
-30.91
1.20
119.70
88.79
B
B
B
C3'
O3'
P
GTP
GTP
G
1
1
2
Y
1
21.70
1.90
104.00
125.70
B
B
B
O3'
P
O5'
GTP
G
G
1
2
2
Y
1
-29.03
2.20
105.20
76.17
B
B
B
O3'
P
OP1
GTP
G
G
1
2
2
Y
1
B
B
O3'
P
GTP
G
1
2
0.100
0.012
1.607
1.707
Y
0.2207
0.2092
0.2102
2.850
62.64
2379
28774
8.27
99.35
0.50
1
FREE R-VALUE
1.33
MOLECULAR REPLACEMENT
26.38
0.90
1.11
4Y1I
2.850
62.64
7
4341
56
4278
0
0.008
4787
0.497
7466
14.270
2372
0.026
988
0.002
198
0.4124
0.5003
2.9082
148
1460
94.00
0.4802
0.4275
2.9715
117
1558
100.00
0.4410
0.3648
3.0406
147
1549
100.00
0.3251
0.3026
3.1166
145
1581
100.00
0.2805
0.2812
3.2009
143
1529
100.00
0.2964
0.2687
3.2951
119
1586
100.00
0.2739
0.2617
3.4014
147
1577
100.00
0.2433
0.2616
3.5230
139
1547
100.00
0.2721
0.2509
3.6640
142
1576
100.00
0.2125
0.2138
3.8308
138
1557
100.00
0.2184
0.2033
4.0327
138
1557
100.00
0.2058
0.2000
4.2853
138
1564
100.00
0.2520
0.1862
4.6161
140
1537
100.00
0.1791
0.1772
5.0804
145
1556
99.00
0.1746
0.1711
5.8151
150
1552
100.00
0.2173
0.1696
7.3247
135
1557
100.00
0.1552
0.1599
62.6580
148
1552
99.00
2.85
62.64
6N2V
15512
0.999
0.118
0.04499
0.1265
1
12.85
7.7
99.75
2.932
2.85
2.952
0.66
1510
0.306
1.131
3.15
1
7.6
99.07
refinement
PHENIX
1.13_2998
data reduction
XDS
data scaling
XDS
phasing
AutoSol
N
Manganese riboswitch from Xanthmonas oryzae bound to Mn(II)
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
3
N
N
3
N
N
3
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
5
N
N
4
N
N
4
N
N
4
N
N
6
N
N
6
N
N
covale
1.629
both
A
GTP
1
A
O3'
GTP
1
1_555
A
G
2
A
P
G
2
1_555
covale
1.707
both
B
GTP
1
B
O3'
GTP
1
1_555
B
G
2
B
P
G
2
1_555
metalc
2.382
A
G
8
A
O6
G
8
1_555
A
SR
122
X
SR
SR
1_555
metalc
2.377
A
G
8
A
OP1
G
8
1_555
A
SR
123
Y
SR
SR
1_555
metalc
2.429
A
G
9
A
OP2
G
9
1_555
A
SR
123
Y
SR
SR
1_555
metalc
2.044
A
A
10
A
OP2
A
10
1_555
A
MG
104
F
MG
MG
1_555
metalc
2.391
A
A
10
A
OP1
A
10
1_555
A
SR
123
Y
SR
SR
1_555
metalc
2.490
A
G
25
A
N7
G
25
1_555
A
SR
125
AA
SR
SR
1_555
metalc
1.986
A
A
33
A
O2'
A
33
1_555
A
MG
116
R
MG
MG
1_555
metalc
2.332
A
G
34
A
O6
G
34
1_555
A
MG
114
P
MG
MG
1_555
metalc
2.465
A
U
43
A
O4
U
43
1_555
A
SR
120
V
SR
SR
1_555
metalc
2.151
A
A
46
A
OP2
A
46
1_555
A
MN
118
T
MN
MN
1_555
metalc
2.384
A
A
46
A
OP1
A
46
1_555
A
SR
123
Y
SR
SR
1_555
metalc
2.185
A
C
47
A
OP2
C
47
1_555
A
MN
118
T
MN
MN
1_555
metalc
2.407
A
C
47
A
O2
C
47
1_555
A
SR
124
Z
SR
SR
1_555
metalc
2.173
A
A
48
A
N1
A
48
1_555
A
MN
118
T
MN
MN
1_555
metalc
2.160
A
G
54
A
OP1
G
54
1_555
A
MG
117
S
MG
MG
1_555
metalc
2.223
A
G
57
A
O6
G
57
1_555
A
MG
103
E
MG
MG
1_555
metalc
2.474
A
G
66
A
O6
G
66
1_555
A
SR
120
V
SR
SR
1_555
metalc
2.432
A
G
77
A
O6
G
77
1_555
A
MG
110
L
MG
MG
1_555
metalc
2.295
A
A
79
A
OP1
A
79
1_555
A
MG
110
L
MG
MG
1_555
metalc
2.132
A
A
80
A
OP2
A
80
1_555
A
MG
111
M
MG
MG
1_555
metalc
2.220
A
G
81
A
OP2
G
81
1_555
A
MG
112
N
MG
MG
1_555
metalc
2.856
A
G
81
A
O5'
G
81
1_555
A
MG
112
N
MG
MG
1_555
metalc
2.278
A
C
99
A
OP2
C
99
1_555
A
MG
108
J
MG
MG
1_555
metalc
2.071
A
MG
114
P
MG
MG
1_555
A
HOH
204
GB
O
HOH
1_555
metalc
2.386
A
SR
120
V
SR
SR
1_555
A
HOH
201
GB
O
HOH
1_555
metalc
2.438
A
SR
120
V
SR
SR
1_555
A
HOH
202
GB
O
HOH
1_555
metalc
2.421
A
SR
120
V
SR
SR
1_555
A
HOH
203
GB
O
HOH
1_555
metalc
2.943
A
SR
124
Z
SR
SR
1_555
B
HOH
203
HB
O
HOH
1_555
metalc
2.353
B
U
5
B
O4
U
5
1_555
B
MG
109
JA
MG
MG
1_555
metalc
2.402
B
G
8
B
O6
G
8
1_555
B
SR
129
DB
SR
SR
1_555
metalc
2.304
B
G
9
B
OP1
G
9
1_555
B
MN
102
CA
MN
MN
1_555
metalc
1.849
B
G
9
B
OP2
G
9
1_555
B
MG
115
PA
MG
MG
1_555
metalc
2.525
B
A
13
B
OP2
A
13
1_555
B
NA
128
CB
NA
NA
1_555
metalc
2.383
B
G
25
B
N7
G
25
1_555
B
MN
126
AB
MN
MN
1_555
metalc
2.375
B
A
32
B
OP1
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
metalc
2.969
B
A
32
B
OP2
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
metalc
2.156
B
A
32
B
O5'
A
32
1_555
B
MG
125
ZA
MG
MG
1_555
metalc
2.376
B
A
33
B
OP2
A
33
1_555
B
MG
125
ZA
MG
MG
1_555
metalc
2.458
B
U
43
B
O4
U
43
1_555
B
SR
130
EB
SR
SR
1_555
metalc
2.317
B
A
46
B
OP2
A
46
1_555
B
MN
102
CA
MN
MN
1_555
metalc
2.028
B
A
46
B
OP1
A
46
1_555
B
MG
115
PA
MG
MG
1_555
metalc
2.069
B
C
47
B
OP2
C
47
1_555
B
MN
102
CA
MN
MN
1_555
metalc
2.211
B
C
47
B
O2
C
47
1_555
B
MG
106
GA
MG
MG
1_555
metalc
2.338
B
A
48
B
N7
A
48
1_555
B
MN
102
CA
MN
MN
1_555
metalc
2.319
B
C
51
B
OP1
C
51
1_555
B
MN
102
CA
MN
MN
1_555
metalc
2.192
B
U
52
B
OP2
U
52
1_555
B
MN
102
CA
MN
MN
1_555
metalc
1.827
B
U
52
B
OP1
U
52
1_555
B
MG
115
PA
MG
MG
1_555
metalc
2.160
B
C
56
B
OP2
C
56
1_555
B
MG
122
WA
MG
MG
1_555
metalc
2.102
B
G
57
B
O6
G
57
1_555
B
MN
103
DA
MN
MN
1_555
metalc
2.444
B
G
66
B
O6
G
66
1_555
B
SR
130
EB
SR
SR
1_555
metalc
2.189
B
G
72
B
OP2
G
72
1_555
B
MG
119
TA
MG
MG
1_555
metalc
2.183
B
G
73
B
OP2
G
73
1_555
B
MG
118
SA
MG
MG
1_555
metalc
2.376
B
C
84
B
O2'
C
84
1_555
B
MG
108
IA
MG
MG
1_555
metalc
2.217
B
C
99
B
O3'
C
99
1_555
B
MG
113
NA
MG
MG
1_555
metalc
2.100
B
C
99
B
O2'
C
99
1_555
B
MG
113
NA
MG
MG
1_555
metalc
2.055
B
MG
115
PA
MG
MG
1_555
B
HOH
201
HB
O
HOH
1_555
metalc
2.061
B
MG
115
PA
MG
MG
1_555
B
HOH
202
HB
O
HOH
1_555
hydrog
WATSON-CRICK
A
GTP
1
A
N1
GTP
1
1_555
A
C
99
A
N3
C
99
1_555
hydrog
WATSON-CRICK
A
GTP
1
A
N2
GTP
1
1_555
A
C
99
A
O2
C
99
1_555
hydrog
WATSON-CRICK
A
GTP
1
A
O6
GTP
1
1_555
A
C
99
A
N4
C
99
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
98
A
N3
C
98
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
98
A
O2
C
98
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
98
A
N4
C
98
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
97
A
N1
G
97
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
97
A
O6
G
97
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
97
A
N2
G
97
1_555
hydrog
TYPE_28_PAIR
A
U
4
A
N3
U
4
1_555
A
G
96
A
O6
G
96
1_555
hydrog
TYPE_28_PAIR
A
U
4
A
O2
U
4
1_555
A
G
96
A
N1
G
96
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
A
A
95
A
N1
A
95
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
A
A
95
A
N6
A
95
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
A
C
94
A
N3
C
94
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
A
C
94
A
O2
C
94
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
A
C
94
A
N4
C
94
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
A
C
93
A
N3
C
93
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
A
C
93
A
O2
C
93
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
A
C
93
A
N4
C
93
1_555
hydrog
TYPE_11_PAIR
A
G
8
A
N2
G
8
1_555
A
A
92
A
N7
A
92
1_555
hydrog
TYPE_11_PAIR
A
G
8
A
N3
G
8
1_555
A
A
92
A
N6
A
92
1_555
hydrog
TYPE_7_PAIR
A
G
9
A
N1
G
9
1_555
A
G
91
A
N7
G
91
1_555
hydrog
TYPE_7_PAIR
A
G
9
A
N2
G
9
1_555
A
G
91
A
O6
G
91
1_555
hydrog
A-G MISPAIR
A
A
10
A
N3
A
10
1_555
A
G
66
A
N2
G
66
1_555
hydrog
A-U PAIR
A
A
10
A
N6
A
10
1_555
B
U
49
B
O4
U
49
1_555
hydrog
REVERSED HOOGSTEEN
A
U
12
A
N3
U
12
1_555
A
A
90
A
N7
A
90
1_555
hydrog
REVERSED HOOGSTEEN
A
U
12
A
O2
U
12
1_555
A
A
90
A
N6
A
90
1_555
hydrog
TYPE_11_PAIR
A
A
13
A
N6
A
13
1_555
A
G
89
A
N3
G
89
1_555
hydrog
TYPE_11_PAIR
A
A
13
A
N7
A
13
1_555
A
G
89
A
N2
G
89
1_555
hydrog
WATSON-CRICK
A
G
14
A
N1
G
14
1_555
A
C
88
A
N3
C
88
1_555
hydrog
WATSON-CRICK
A
G
14
A
N2
G
14
1_555
A
C
88
A
O2
C
88
1_555
hydrog
WATSON-CRICK
A
G
14
A
O6
G
14
1_555
A
C
88
A
N4
C
88
1_555
hydrog
WATSON-CRICK
A
C
15
A
N3
C
15
1_555
A
G
87
A
N1
G
87
1_555
hydrog
WATSON-CRICK
A
C
15
A
N4
C
15
1_555
A
G
87
A
O6
G
87
1_555
hydrog
WATSON-CRICK
A
C
15
A
O2
C
15
1_555
A
G
87
A
N2
G
87
1_555
hydrog
WATSON-CRICK
A
C
16
A
N3
C
16
1_555
A
G
86
A
N1
G
86
1_555
hydrog
WATSON-CRICK
A
C
16
A
N4
C
16
1_555
A
G
86
A
O6
G
86
1_555
hydrog
WATSON-CRICK
A
C
16
A
O2
C
16
1_555
A
G
86
A
N2
G
86
1_555
hydrog
TYPE_16_PAIR
A
U
17
A
N3
U
17
1_555
A
U
85
A
O4
U
85
1_555
hydrog
TYPE_16_PAIR
A
U
17
A
O2
U
17
1_555
A
U
85
A
N3
U
85
1_555
hydrog
WATSON-CRICK
A
G
18
A
N1
G
18
1_555
A
C
35
A
N3
C
35
1_555
hydrog
WATSON-CRICK
A
G
18
A
N2
G
18
1_555
A
C
35
A
O2
C
35
1_555
hydrog
WATSON-CRICK
A
G
18
A
O6
G
18
1_555
A
C
35
A
N4
C
35
1_555
hydrog
WATSON-CRICK
A
C
19
A
N3
C
19
1_555
A
G
34
A
N1
G
34
1_555
hydrog
WATSON-CRICK
A
C
19
A
N4
C
19
1_555
A
G
34
A
O6
G
34
1_555
hydrog
WATSON-CRICK
A
C
19
A
O2
C
19
1_555
A
G
34
A
N2
G
34
1_555
hydrog
WATSON-CRICK
A
U
20
A
N3
U
20
1_555
A
A
33
A
N1
A
33
1_555
hydrog
WATSON-CRICK
A
U
20
A
O4
U
20
1_555
A
A
33
A
N6
A
33
1_555
hydrog
WATSON-CRICK
A
U
21
A
N3
U
21
1_555
A
A
32
A
N1
A
32
1_555
hydrog
WATSON-CRICK
A
U
21
A
O4
U
21
1_555
A
A
32
A
N6
A
32
1_555
hydrog
WATSON-CRICK
A
U
22
A
N3
U
22
1_555
A
A
31
A
N1
A
31
1_555
hydrog
WATSON-CRICK
A
U
22
A
O4
U
22
1_555
A
A
31
A
N6
A
31
1_555
hydrog
WATSON-CRICK
A
C
23
A
N3
C
23
1_555
A
G
30
A
N1
G
30
1_555
hydrog
WATSON-CRICK
A
C
23
A
N4
C
23
1_555
A
G
30
A
O6
G
30
1_555
hydrog
WATSON-CRICK
A
C
23
A
O2
C
23
1_555
A
G
30
A
N2
G
30
1_555
hydrog
WATSON-CRICK
A
G
24
A
N1
G
24
1_555
A
C
29
A
N3
C
29
1_555
hydrog
WATSON-CRICK
A
G
24
A
N2
G
24
1_555
A
C
29
A
O2
C
29
1_555
hydrog
WATSON-CRICK
A
G
24
A
O6
G
24
1_555
A
C
29
A
N4
C
29
1_555
hydrog
G-A MISPAIR
A
G
25
A
N2
G
25
1_555
A
A
28
A
N7
A
28
1_555
hydrog
G-A MISPAIR
A
G
36
A
N2
G
36
1_555
A
A
74
A
N1
A
74
1_555
hydrog
G-U MISPAIR
A
G
36
A
N2
G
36
1_555
A
U
83
A
O2
U
83
1_555
hydrog
WATSON-CRICK
A
C
37
A
N3
C
37
1_555
A
G
73
A
N1
G
73
1_555
hydrog
WATSON-CRICK
A
C
37
A
N4
C
37
1_555
A
G
73
A
O6
G
73
1_555
hydrog
WATSON-CRICK
A
C
37
A
O2
C
37
1_555
A
G
73
A
N2
G
73
1_555
hydrog
WATSON-CRICK
A
C
38
A
N3
C
38
1_555
A
G
72
A
N1
G
72
1_555
hydrog
WATSON-CRICK
A
C
38
A
N4
C
38
1_555
A
G
72
A
O6
G
72
1_555
hydrog
WATSON-CRICK
A
C
38
A
O2
C
38
1_555
A
G
72
A
N2
G
72
1_555
hydrog
WATSON-CRICK
A
U
39
A
N3
U
39
1_555
A
A
71
A
N1
A
71
1_555
hydrog
WATSON-CRICK
A
U
39
A
O4
U
39
1_555
A
A
71
A
N6
A
71
1_555
hydrog
WATSON-CRICK
A
G
40
A
N1
G
40
1_555
A
C
70
A
N3
C
70
1_555
hydrog
WATSON-CRICK
A
G
40
A
N2
G
40
1_555
A
C
70
A
O2
C
70
1_555
hydrog
WATSON-CRICK
A
G
40
A
O6
G
40
1_555
A
C
70
A
N4
C
70
1_555
hydrog
TYPE_28_PAIR
A
U
41
A
N3
U
41
1_555
A
G
69
A
O6
G
69
1_555
hydrog
TYPE_28_PAIR
A
U
41
A
O2
U
41
1_555
A
G
69
A
N1
G
69
1_555
hydrog
WATSON-CRICK
A
A
42
A
N1
A
42
1_555
A
U
68
A
N3
U
68
1_555
hydrog
WATSON-CRICK
A
A
42
A
N6
A
42
1_555
A
U
68
A
O4
U
68
1_555
hydrog
TYPE_28_PAIR
A
U
43
A
N3
U
43
1_555
A
G
67
A
O6
G
67
1_555
hydrog
TYPE_28_PAIR
A
U
43
A
O2
U
43
1_555
A
G
67
A
N1
G
67
1_555
hydrog
WATSON-CRICK
A
C
44
A
N3
C
44
1_555
A
G
66
A
N1
G
66
1_555
hydrog
WATSON-CRICK
A
C
44
A
N4
C
44
1_555
A
G
66
A
O6
G
66
1_555
hydrog
WATSON-CRICK
A
C
44
A
O2
C
44
1_555
A
G
66
A
N2
G
66
1_555
hydrog
WATSON-CRICK
A
A
45
A
N1
A
45
1_555
A
U
65
A
N3
U
65
1_555
hydrog
WATSON-CRICK
A
A
45
A
N6
A
45
1_555
A
U
65
A
O4
U
65
1_555
hydrog
WATSON-CRICK
A
C
53
A
N3
C
53
1_555
A
G
64
A
N1
G
64
1_555
hydrog
WATSON-CRICK
A
C
53
A
N4
C
53
1_555
A
G
64
A
O6
G
64
1_555
hydrog
WATSON-CRICK
A
C
53
A
O2
C
53
1_555
A
G
64
A
N2
G
64
1_555
hydrog
WATSON-CRICK
A
G
54
A
N1
G
54
1_555
A
C
63
A
N3
C
63
1_555
hydrog
WATSON-CRICK
A
G
54
A
N2
G
54
1_555
A
C
63
A
O2
C
63
1_555
hydrog
WATSON-CRICK
A
G
54
A
O6
G
54
1_555
A
C
63
A
N4
C
63
1_555
hydrog
WATSON-CRICK
A
G
55
A
N1
G
55
1_555
A
C
62
A
N3
C
62
1_555
hydrog
WATSON-CRICK
A
G
55
A
N2
G
55
1_555
A
C
62
A
O2
C
62
1_555
hydrog
WATSON-CRICK
A
G
55
A
O6
G
55
1_555
A
C
62
A
N4
C
62
1_555
hydrog
WATSON-CRICK
A
C
56
A
N3
C
56
1_555
A
G
61
A
N1
G
61
1_555
hydrog
WATSON-CRICK
A
C
56
A
N4
C
56
1_555
A
G
61
A
O6
G
61
1_555
hydrog
WATSON-CRICK
A
C
56
A
O2
C
56
1_555
A
G
61
A
N2
G
61
1_555
hydrog
G-A MISPAIR
A
G
57
A
N2
G
57
1_555
A
A
60
A
N7
A
60
1_555
hydrog
WATSON-CRICK
A
A
74
A
N1
A
74
1_555
A
U
83
A
N3
U
83
1_555
hydrog
WATSON-CRICK
A
A
74
A
N6
A
74
1_555
A
U
83
A
O4
U
83
1_555
hydrog
WATSON-CRICK
A
C
75
A
N3
C
75
1_555
A
G
82
A
N1
G
82
1_555
hydrog
WATSON-CRICK
A
C
75
A
N4
C
75
1_555
A
G
82
A
O6
G
82
1_555
hydrog
WATSON-CRICK
A
C
75
A
O2
C
75
1_555
A
G
82
A
N2
G
82
1_555
hydrog
WATSON-CRICK
A
C
76
A
N3
C
76
1_555
A
G
81
A
N1
G
81
1_555
hydrog
WATSON-CRICK
A
C
76
A
N4
C
76
1_555
A
G
81
A
O6
G
81
1_555
hydrog
WATSON-CRICK
A
C
76
A
O2
C
76
1_555
A
G
81
A
N2
G
81
1_555
hydrog
G-A MISPAIR
A
G
77
A
N2
G
77
1_555
A
A
80
A
N7
A
80
1_555
hydrog
WATSON-CRICK
B
GTP
1
B
N1
GTP
1
1_555
B
C
99
B
N3
C
99
1_555
hydrog
WATSON-CRICK
B
GTP
1
B
N2
GTP
1
1_555
B
C
99
B
O2
C
99
1_555
hydrog
WATSON-CRICK
B
GTP
1
B
O6
GTP
1
1_555
B
C
99
B
N4
C
99
1_555
hydrog
WATSON-CRICK
B
G
2
B
N1
G
2
1_555
B
C
98
B
N3
C
98
1_555
hydrog
WATSON-CRICK
B
G
2
B
N2
G
2
1_555
B
C
98
B
O2
C
98
1_555
hydrog
WATSON-CRICK
B
G
2
B
O6
G
2
1_555
B
C
98
B
N4
C
98
1_555
hydrog
WATSON-CRICK
B
C
3
B
N3
C
3
1_555
B
G
97
B
N1
G
97
1_555
hydrog
WATSON-CRICK
B
C
3
B
N4
C
3
1_555
B
G
97
B
O6
G
97
1_555
hydrog
WATSON-CRICK
B
C
3
B
O2
C
3
1_555
B
G
97
B
N2
G
97
1_555
hydrog
TYPE_28_PAIR
B
U
4
B
N3
U
4
1_555
B
G
96
B
O6
G
96
1_555
hydrog
TYPE_28_PAIR
B
U
4
B
O2
U
4
1_555
B
G
96
B
N1
G
96
1_555
hydrog
WATSON-CRICK
B
U
5
B
N3
U
5
1_555
B
A
95
B
N1
A
95
1_555
hydrog
WATSON-CRICK
B
U
5
B
O4
U
5
1_555
B
A
95
B
N6
A
95
1_555
hydrog
WATSON-CRICK
B
G
6
B
N1
G
6
1_555
B
C
94
B
N3
C
94
1_555
hydrog
WATSON-CRICK
B
G
6
B
N2
G
6
1_555
B
C
94
B
O2
C
94
1_555
hydrog
WATSON-CRICK
B
G
6
B
O6
G
6
1_555
B
C
94
B
N4
C
94
1_555
hydrog
WATSON-CRICK
B
G
7
B
N1
G
7
1_555
B
C
93
B
N3
C
93
1_555
hydrog
WATSON-CRICK
B
G
7
B
N2
G
7
1_555
B
C
93
B
O2
C
93
1_555
hydrog
WATSON-CRICK
B
G
7
B
O6
G
7
1_555
B
C
93
B
N4
C
93
1_555
hydrog
TYPE_11_PAIR
B
G
8
B
N2
G
8
1_555
B
A
92
B
N7
A
92
1_555
hydrog
TYPE_11_PAIR
B
G
8
B
N3
G
8
1_555
B
A
92
B
N6
A
92
1_555
hydrog
TYPE_7_PAIR
B
G
9
B
N1
G
9
1_555
B
G
91
B
N7
G
91
1_555
hydrog
TYPE_7_PAIR
B
G
9
B
N2
G
9
1_555
B
G
91
B
O6
G
91
1_555
hydrog
A-G MISPAIR
B
A
10
B
N3
A
10
1_555
B
G
66
B
N2
G
66
1_555
hydrog
REVERSED HOOGSTEEN
B
U
12
B
N3
U
12
1_555
B
A
90
B
N7
A
90
1_555
hydrog
REVERSED HOOGSTEEN
B
U
12
B
O2
U
12
1_555
B
A
90
B
N6
A
90
1_555
hydrog
TYPE_11_PAIR
B
A
13
B
N6
A
13
1_555
B
G
89
B
N3
G
89
1_555
hydrog
TYPE_11_PAIR
B
A
13
B
N7
A
13
1_555
B
G
89
B
N2
G
89
1_555
hydrog
WATSON-CRICK
B
G
14
B
N1
G
14
1_555
B
C
88
B
N3
C
88
1_555
hydrog
WATSON-CRICK
B
G
14
B
N2
G
14
1_555
B
C
88
B
O2
C
88
1_555
hydrog
WATSON-CRICK
B
G
14
B
O6
G
14
1_555
B
C
88
B
N4
C
88
1_555
hydrog
WATSON-CRICK
B
C
15
B
N3
C
15
1_555
B
G
87
B
N1
G
87
1_555
hydrog
WATSON-CRICK
B
C
15
B
N4
C
15
1_555
B
G
87
B
O6
G
87
1_555
hydrog
WATSON-CRICK
B
C
15
B
O2
C
15
1_555
B
G
87
B
N2
G
87
1_555
hydrog
WATSON-CRICK
B
C
16
B
N3
C
16
1_555
B
G
86
B
N1
G
86
1_555
hydrog
WATSON-CRICK
B
C
16
B
N4
C
16
1_555
B
G
86
B
O6
G
86
1_555
hydrog
WATSON-CRICK
B
C
16
B
O2
C
16
1_555
B
G
86
B
N2
G
86
1_555
hydrog
TYPE_16_PAIR
B
U
17
B
N3
U
17
1_555
B
U
85
B
O4
U
85
1_555
hydrog
TYPE_16_PAIR
B
U
17
B
O2
U
17
1_555
B
U
85
B
N3
U
85
1_555
hydrog
WATSON-CRICK
B
G
18
B
N1
G
18
1_555
B
C
35
B
N3
C
35
1_555
hydrog
WATSON-CRICK
B
G
18
B
N2
G
18
1_555
B
C
35
B
O2
C
35
1_555
hydrog
WATSON-CRICK
B
G
18
B
O6
G
18
1_555
B
C
35
B
N4
C
35
1_555
hydrog
WATSON-CRICK
B
C
19
B
N3
C
19
1_555
B
G
34
B
N1
G
34
1_555
hydrog
WATSON-CRICK
B
C
19
B
N4
C
19
1_555
B
G
34
B
O6
G
34
1_555
hydrog
WATSON-CRICK
B
C
19
B
O2
C
19
1_555
B
G
34
B
N2
G
34
1_555
hydrog
WATSON-CRICK
B
U
20
B
N3
U
20
1_555
B
A
33
B
N1
A
33
1_555
hydrog
WATSON-CRICK
B
U
20
B
O4
U
20
1_555
B
A
33
B
N6
A
33
1_555
hydrog
WATSON-CRICK
B
U
21
B
N3
U
21
1_555
B
A
32
B
N1
A
32
1_555
hydrog
WATSON-CRICK
B
U
21
B
O4
U
21
1_555
B
A
32
B
N6
A
32
1_555
hydrog
WATSON-CRICK
B
U
22
B
N3
U
22
1_555
B
A
31
B
N1
A
31
1_555
hydrog
WATSON-CRICK
B
U
22
B
O4
U
22
1_555
B
A
31
B
N6
A
31
1_555
hydrog
WATSON-CRICK
B
C
23
B
N3
C
23
1_555
B
G
30
B
N1
G
30
1_555
hydrog
WATSON-CRICK
B
C
23
B
N4
C
23
1_555
B
G
30
B
O6
G
30
1_555
hydrog
WATSON-CRICK
B
C
23
B
O2
C
23
1_555
B
G
30
B
N2
G
30
1_555
hydrog
WATSON-CRICK
B
G
24
B
N1
G
24
1_555
B
C
29
B
N3
C
29
1_555
hydrog
WATSON-CRICK
B
G
24
B
N2
G
24
1_555
B
C
29
B
O2
C
29
1_555
hydrog
WATSON-CRICK
B
G
24
B
O6
G
24
1_555
B
C
29
B
N4
C
29
1_555
hydrog
G-A MISPAIR
B
G
25
B
N2
G
25
1_555
B
A
28
B
N7
A
28
1_555
hydrog
WATSON-CRICK
B
C
37
B
N3
C
37
1_555
B
G
73
B
N1
G
73
1_555
hydrog
WATSON-CRICK
B
C
37
B
N4
C
37
1_555
B
G
73
B
O6
G
73
1_555
hydrog
WATSON-CRICK
B
C
37
B
O2
C
37
1_555
B
G
73
B
N2
G
73
1_555
hydrog
WATSON-CRICK
B
C
38
B
N3
C
38
1_555
B
G
72
B
N1
G
72
1_555
hydrog
WATSON-CRICK
B
C
38
B
N4
C
38
1_555
B
G
72
B
O6
G
72
1_555
hydrog
WATSON-CRICK
B
C
38
B
O2
C
38
1_555
B
G
72
B
N2
G
72
1_555
hydrog
WATSON-CRICK
B
U
39
B
N3
U
39
1_555
B
A
71
B
N1
A
71
1_555
hydrog
WATSON-CRICK
B
U
39
B
O4
U
39
1_555
B
A
71
B
N6
A
71
1_555
hydrog
WATSON-CRICK
B
G
40
B
N1
G
40
1_555
B
C
70
B
N3
C
70
1_555
hydrog
WATSON-CRICK
B
G
40
B
N2
G
40
1_555
B
C
70
B
O2
C
70
1_555
hydrog
WATSON-CRICK
B
G
40
B
O6
G
40
1_555
B
C
70
B
N4
C
70
1_555
hydrog
TYPE_28_PAIR
B
U
41
B
N3
U
41
1_555
B
G
69
B
O6
G
69
1_555
hydrog
TYPE_28_PAIR
B
U
41
B
O2
U
41
1_555
B
G
69
B
N1
G
69
1_555
hydrog
WATSON-CRICK
B
A
42
B
N1
A
42
1_555
B
U
68
B
N3
U
68
1_555
hydrog
WATSON-CRICK
B
A
42
B
N6
A
42
1_555
B
U
68
B
O4
U
68
1_555
hydrog
TYPE_28_PAIR
B
U
43
B
N3
U
43
1_555
B
G
67
B
O6
G
67
1_555
hydrog
TYPE_28_PAIR
B
U
43
B
O2
U
43
1_555
B
G
67
B
N1
G
67
1_555
hydrog
WATSON-CRICK
B
C
44
B
N3
C
44
1_555
B
G
66
B
N1
G
66
1_555
hydrog
WATSON-CRICK
B
C
44
B
N4
C
44
1_555
B
G
66
B
O6
G
66
1_555
hydrog
WATSON-CRICK
B
C
44
B
O2
C
44
1_555
B
G
66
B
N2
G
66
1_555
hydrog
WATSON-CRICK
B
A
45
B
N1
A
45
1_555
B
U
65
B
N3
U
65
1_555
hydrog
WATSON-CRICK
B
A
45
B
N6
A
45
1_555
B
U
65
B
O4
U
65
1_555
hydrog
WATSON-CRICK
B
C
53
B
N3
C
53
1_555
B
G
64
B
N1
G
64
1_555
hydrog
WATSON-CRICK
B
C
53
B
N4
C
53
1_555
B
G
64
B
O6
G
64
1_555
hydrog
WATSON-CRICK
B
C
53
B
O2
C
53
1_555
B
G
64
B
N2
G
64
1_555
hydrog
WATSON-CRICK
B
G
54
B
N1
G
54
1_555
B
C
63
B
N3
C
63
1_555
hydrog
WATSON-CRICK
B
G
54
B
N2
G
54
1_555
B
C
63
B
O2
C
63
1_555
hydrog
WATSON-CRICK
B
G
54
B
O6
G
54
1_555
B
C
63
B
N4
C
63
1_555
hydrog
WATSON-CRICK
B
G
55
B
N1
G
55
1_555
B
C
62
B
N3
C
62
1_555
hydrog
WATSON-CRICK
B
G
55
B
N2
G
55
1_555
B
C
62
B
O2
C
62
1_555
hydrog
WATSON-CRICK
B
G
55
B
O6
G
55
1_555
B
C
62
B
N4
C
62
1_555
hydrog
WATSON-CRICK
B
C
56
B
N3
C
56
1_555
B
G
61
B
N1
G
61
1_555
hydrog
WATSON-CRICK
B
C
56
B
N4
C
56
1_555
B
G
61
B
O6
G
61
1_555
hydrog
WATSON-CRICK
B
C
56
B
O2
C
56
1_555
B
G
61
B
N2
G
61
1_555
hydrog
G-A MISPAIR
B
G
57
B
N3
G
57
1_555
B
A
60
B
N6
A
60
1_555
hydrog
WATSON-CRICK
B
C
75
B
N3
C
75
1_555
B
G
82
B
N1
G
82
1_555
hydrog
WATSON-CRICK
B
C
75
B
N4
C
75
1_555
B
G
82
B
O6
G
82
1_555
hydrog
WATSON-CRICK
B
C
75
B
O2
C
75
1_555
B
G
82
B
N2
G
82
1_555
hydrog
WATSON-CRICK
B
C
76
B
N3
C
76
1_555
B
G
81
B
N1
G
81
1_555
hydrog
WATSON-CRICK
B
C
76
B
N4
C
76
1_555
B
G
81
B
O6
G
81
1_555
hydrog
WATSON-CRICK
B
C
76
B
O2
C
76
1_555
B
G
81
B
N2
G
81
1_555
hydrog
G-A MISPAIR
B
G
77
B
N2
G
77
1_555
B
A
80
B
N7
A
80
1_555
RNA
riboswitch, RNA, manganese
6N2V
PDB
1
1
6N2V
1
99
6N2V
1
99
6N2V
A
1
1
99
1
99
6N2V
1
99
6N2V
B
1
1
99
binding site for residue MG A 102
A
MG
102
Software
1
binding site for residue MG A 103
A
MG
103
Software
1
binding site for residue MG A 104
A
MG
104
Software
1
binding site for residue MG A 105
A
MG
105
Software
1
binding site for residue MG A 106
A
MG
106
Software
2
binding site for residue MG A 108
A
MG
108
Software
1
binding site for residue MG A 109
A
MG
109
Software
2
binding site for residue MG A 110
A
MG
110
Software
2
binding site for residue MG A 111
A
MG
111
Software
2
binding site for residue MG A 112
A
MG
112
Software
1
binding site for residue MG A 113
A
MG
113
Software
1
binding site for residue MG A 114
A
MG
114
Software
3
binding site for residue MG A 116
A
MG
116
Software
1
binding site for residue MG A 117
A
MG
117
Software
2
binding site for residue MN A 118
A
MN
118
Software
3
binding site for residue MN A 119
A
MN
119
Software
1
binding site for residue SR A 120
A
SR
120
Software
5
binding site for residue SR A 121
A
SR
121
Software
1
binding site for residue SR A 122
A
SR
122
Software
1
binding site for residue SR A 123
A
SR
123
Software
4
binding site for residue SR A 124
A
SR
124
Software
2
binding site for residue SR A 125
A
SR
125
Software
1
binding site for residue MN B 101
B
MN
101
Software
2
binding site for residue MN B 102
B
MN
102
Software
6
binding site for residue MN B 103
B
MN
103
Software
2
binding site for residue MG B 104
B
MG
104
Software
1
binding site for residue MG B 106
B
MG
106
Software
1
binding site for residue MG B 107
B
MG
107
Software
1
binding site for residue MG B 108
B
MG
108
Software
2
binding site for residue MG B 109
B
MG
109
Software
2
binding site for residue MG B 111
B
MG
111
Software
1
binding site for residue MG B 113
B
MG
113
Software
2
binding site for residue MG B 115
B
MG
115
Software
6
binding site for residue MG B 116
B
MG
116
Software
2
binding site for residue MG B 117
B
MG
117
Software
1
binding site for residue MG B 118
B
MG
118
Software
1
binding site for residue MG B 119
B
MG
119
Software
1
binding site for residue MG B 120
B
MG
120
Software
1
binding site for residue MG B 121
B
MG
121
Software
2
binding site for residue MG B 122
B
MG
122
Software
3
binding site for residue MG B 123
B
MG
123
Software
2
binding site for residue MG B 124
B
MG
124
Software
1
binding site for residue MG B 125
B
MG
125
Software
2
binding site for residue MN B 126
B
MN
126
Software
1
binding site for residue MN B 127
B
MN
127
Software
1
binding site for residue NA B 128
B
NA
128
Software
2
binding site for residue SR B 129
B
SR
129
Software
1
binding site for residue SR B 130
B
SR
130
Software
2
binding site for Di-nucleotide GTP B 1 and G B 2
B
GTP
1
Software
5
A
G
89
A
G
89
1
1_555
A
G
57
A
G
57
1
1_555
A
A
10
A
A
10
1
1_555
A
G
72
A
G
72
1
1_555
A
A
78
A
A
78
2
1_555
B
G
11
B
G
11
2
3_544
A
C
99
A
C
99
1
1_555
A
G
81
A
G
81
2
1_555
A
MG
111
M
MG
2
1_555
A
G
77
A
G
77
2
1_555
A
A
79
A
A
79
2
1_555
A
A
80
A
A
80
2
1_555
A
MG
109
K
MG
2
1_555
A
G
81
A
G
81
1
1_555
A
G
72
A
G
72
1
1_555
A
A
33
A
A
33
3
1_555
A
G
34
A
G
34
3
1_555
A
HOH
204
GB
HOH
3
1_555
A
A
33
A
A
33
1
1_555
A
U
52
A
U
52
2
1_555
A
G
54
A
G
54
2
1_555
A
A
46
A
A
46
3
1_555
A
C
47
A
C
47
3
1_555
A
A
48
A
A
48
3
1_555
A
C
88
A
C
88
1
1_555
A
U
43
A
U
43
5
1_555
A
G
66
A
G
66
5
1_555
A
HOH
201
GB
HOH
5
1_555
A
HOH
202
GB
HOH
5
1_555
A
HOH
203
GB
HOH
5
1_555
A
U
68
A
U
68
1
1_555
A
G
8
A
G
8
1
1_555
A
G
8
A
G
8
4
1_555
A
G
9
A
G
9
4
1_555
A
A
10
A
A
10
4
1_555
A
A
46
A
A
46
4
1_555
A
C
47
A
C
47
2
1_555
B
HOH
203
HB
HOH
2
1_555
A
G
25
A
G
25
1
1_555
B
U
17
B
U
17
2
1_555
B
G
18
B
G
18
2
1_555
B
G
9
B
G
9
6
1_555
B
A
46
B
A
46
6
1_555
B
C
47
B
C
47
6
1_555
B
A
48
B
A
48
6
1_555
B
C
51
B
C
51
6
1_555
B
U
52
B
U
52
6
1_555
B
G
57
B
G
57
2
1_555
B
MG
122
WA
MG
2
1_555
B
G
89
B
G
89
1
1_555
B
C
47
B
C
47
1
1_555
B
A
10
B
A
10
1
1_555
B
C
84
B
C
84
2
1_555
B
MG
111
LA
MG
2
1_555
B
U
5
B
U
5
2
1_555
B
G
6
B
G
6
2
1_555
B
MG
108
IA
MG
1
1_555
A
GTP
1
A
GTP
1
2
3_555
B
C
99
B
C
99
2
1_555
B
G
9
B
G
9
6
1_555
B
A
46
B
A
46
6
1_555
B
C
51
B
C
51
6
1_555
B
U
52
B
U
52
6
1_555
B
HOH
201
HB
HOH
6
1_555
B
HOH
202
HB
HOH
6
1_555
B
U
41
B
U
41
2
1_555
B
U
68
B
U
68
2
1_555
B
G
81
B
G
81
1
1_555
B
G
73
B
G
73
1
1_555
B
G
72
B
G
72
1
1_555
B
C
63
B
C
63
1
1_555
B
G
54
B
G
54
2
1_555
B
MG
123
XA
MG
2
1_555
B
C
56
B
C
56
3
1_555
B
G
57
B
G
57
3
1_555
B
MN
103
DA
MN
3
1_555
B
G
55
B
G
55
2
1_555
B
MG
121
VA
MG
2
1_555
B
G
54
B
G
54
1
1_555
B
A
32
B
A
32
2
1_555
B
A
33
B
A
33
2
1_555
B
G
25
B
G
25
1
1_555
B
U
83
B
U
83
1
1_555
B
A
13
B
A
13
2
1_555
B
G
14
B
G
14
2
1_555
B
G
8
B
G
8
1
1_555
B
U
43
B
U
43
2
1_555
B
G
66
B
G
66
2
1_555
A
GTP
1
A
GTP
1
5
3_555
A
C
99
A
C
99
5
3_555
B
C
3
B
C
3
5
1_555
B
C
98
B
C
98
5
1_555
B
C
99
B
C
99
5
1_555
19
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