data_6NK4 # _entry.id 6NK4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6NK4 pdb_00006nk4 10.2210/pdb6nk4/pdb WWPDB D_1000238875 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6NK4 _pdbx_database_status.recvd_initial_deposition_date 2019-01-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Eisenberg, D.S.' 1 ? 'Boyer, D.R.' 2 ? 'Sawaya, M.R.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Intrinsic electronic conductivity of individual atomically resolved amyloid crystals reveals micrometer-long hole hopping via tyrosines. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2014139118 _citation.pdbx_database_id_PubMed 33372136 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shipps, C.' 1 0000-0001-8397-1096 primary 'Kelly, H.R.' 2 ? primary 'Dahl, P.J.' 3 ? primary 'Yi, S.M.' 4 0000-0001-9219-9536 primary 'Vu, D.' 5 0000-0002-2623-963X primary 'Boyer, D.' 6 0000-0002-4487-0230 primary 'Glynn, C.' 7 0000-0002-2197-2357 primary 'Sawaya, M.R.' 8 0000-0003-0874-9043 primary 'Eisenberg, D.' 9 0000-0003-2432-5419 primary 'Batista, V.S.' 10 0000-0002-3262-1237 primary 'Malvankar, N.S.' 11 0000-0001-5611-6633 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6NK4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 62.906 _cell.length_a_esd ? _cell.length_b 62.906 _cell.length_b_esd ? _cell.length_c 4.832 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Microtubule-associated protein tau' 1086.390 1 ? ? 'repeat 2 peptide (UNP residues 591-599)' ? 2 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVQIINKKL _entity_poly.pdbx_seq_one_letter_code_can KVQIINKKL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 GLN n 1 4 ILE n 1 5 ILE n 1 6 ASN n 1 7 LYS n 1 8 LYS n 1 9 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KVQIINKKL _struct_ref.pdbx_align_begin 591 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6NK4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10636 _struct_ref_seq.db_align_beg 591 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 599 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6NK4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M lithium citrate, 20% PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 88 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'TVIPS F416 CMOS CAMERA' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-01-19 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TECNAI F20 TEM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 22.140 _reflns.entry_id 6NK4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.994 _reflns.d_resolution_low 90.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 943 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.000 _reflns.pdbx_Rmerge_I_obs 0.244 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 2.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.394 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.000 2.150 ? ? ? ? ? ? 174 96.700 ? ? ? ? 0.681 ? ? ? ? ? ? ? ? 4.900 ? 1.038 ? ? ? ? ? 1 1 ? ? 2.150 2.370 ? ? ? ? ? ? 196 96.100 ? ? ? ? 0.640 ? ? ? ? ? ? ? ? 7.300 ? 1.162 ? ? ? ? ? 2 1 ? ? 2.370 2.710 ? ? ? ? ? ? 166 98.800 ? ? ? ? 0.366 ? ? ? ? ? ? ? ? 6.400 ? 1.193 ? ? ? ? ? 3 1 ? ? 2.710 3.420 ? ? ? ? ? ? 185 99.500 ? ? ? ? 0.327 ? ? ? ? ? ? ? ? 5.500 ? 1.362 ? ? ? ? ? 4 1 ? ? 3.420 27.24 ? ? ? ? ? ? 222 95.300 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 5.600 ? 2.110 ? ? ? ? ? 5 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 51.320 _refine.B_iso_mean 18.6573 _refine.B_iso_min 3.330 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6NK4 _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9940 _refine.ls_d_res_low 27.24 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 934 _refine.ls_number_reflns_R_free 84 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.3900 _refine.ls_percent_reflns_R_free 8.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2638 _refine.ls_R_factor_R_free 0.2991 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2601 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 5V5B' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.1000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.d_res_high 1.9940 _refine_hist.d_res_low 54.4780 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 79 _refine_hist.pdbx_number_residues_total 9 _refine_hist.pdbx_B_iso_mean_solvent 17.98 _refine_hist.pdbx_number_atoms_protein 76 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.010 ? 75 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.399 ? 98 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.114 ? 13 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.005 ? 11 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 17.503 ? 33 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.9944 _refine_ls_shell.d_res_low 27.24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.number_reflns_R_work 850 _refine_ls_shell.percent_reflns_obs 96.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2991 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2601 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6NK4 _struct.title 'KVQIINKKL, crystal structure of a tau protein fragment' _struct.pdbx_model_details 'Crystal structure KVQIINKL from the microtubule binding region of tau protein reveals a tightly packed steric zipper' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6NK4 _struct_keywords.text ;Amyloid, tau, Alzheimer's Disease, tauopathy, MAPT, STRUCTURAL PROTEIN ; _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _atom_sites.entry_id 6NK4 _atom_sites.fract_transf_matrix[1][1] 0.015897 _atom_sites.fract_transf_matrix[1][2] 0.009178 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018356 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.206954 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LYS A 1 1 ? 21.145 -36.884 0.577 1.00 18.51 ? 1 LYS A N 1 ATOM 2 C CA . LYS A 1 1 ? 21.123 -35.509 1.150 1.00 14.56 ? 1 LYS A CA 1 ATOM 3 C C . LYS A 1 1 ? 19.924 -34.729 0.614 1.00 12.99 ? 1 LYS A C 1 ATOM 4 O O . LYS A 1 1 ? 19.694 -34.728 -0.581 1.00 9.41 ? 1 LYS A O 1 ATOM 5 C CB . LYS A 1 1 ? 22.406 -34.777 0.761 1.00 18.89 ? 1 LYS A CB 1 ATOM 6 C CG . LYS A 1 1 ? 22.700 -33.546 1.586 1.00 25.41 ? 1 LYS A CG 1 ATOM 7 C CD . LYS A 1 1 ? 23.549 -32.536 0.828 1.00 22.34 ? 1 LYS A CD 1 ATOM 8 C CE . LYS A 1 1 ? 24.847 -33.125 0.318 1.00 26.47 ? 1 LYS A CE 1 ATOM 9 N NZ . LYS A 1 1 ? 25.738 -32.034 -0.174 1.00 28.18 ? 1 LYS A NZ 1 ATOM 10 N N . VAL A 1 2 ? 19.149 -34.099 1.497 1.00 8.51 ? 2 VAL A N 1 ATOM 11 C CA . VAL A 1 2 ? 18.199 -33.054 1.075 1.00 11.73 ? 2 VAL A CA 1 ATOM 12 C C . VAL A 1 2 ? 18.736 -31.770 1.709 1.00 6.52 ? 2 VAL A C 1 ATOM 13 O O . VAL A 1 2 ? 18.886 -31.691 2.930 1.00 11.18 ? 2 VAL A O 1 ATOM 14 C CB . VAL A 1 2 ? 16.733 -33.310 1.509 1.00 8.47 ? 2 VAL A CB 1 ATOM 15 C CG1 . VAL A 1 2 ? 15.806 -32.270 0.893 1.00 5.03 ? 2 VAL A CG1 1 ATOM 16 C CG2 . VAL A 1 2 ? 16.276 -34.705 1.114 1.00 10.70 ? 2 VAL A CG2 1 ATOM 17 N N . GLN A 1 3 ? 19.053 -30.784 0.886 1.00 8.45 ? 3 GLN A N 1 ATOM 18 C CA . GLN A 1 3 ? 19.726 -29.602 1.393 1.00 9.49 ? 3 GLN A CA 1 ATOM 19 C C . GLN A 1 3 ? 19.412 -28.344 0.635 1.00 5.09 ? 3 GLN A C 1 ATOM 20 O O . GLN A 1 3 ? 19.318 -28.343 -0.587 1.00 4.45 ? 3 GLN A O 1 ATOM 21 C CB . GLN A 1 3 ? 21.251 -29.849 1.366 1.00 11.82 ? 3 GLN A CB 1 ATOM 22 C CG . GLN A 1 3 ? 22.098 -28.718 1.948 1.00 12.48 ? 3 GLN A CG 1 ATOM 23 C CD . GLN A 1 3 ? 23.574 -29.018 1.805 1.00 20.08 ? 3 GLN A CD 1 ATOM 24 O OE1 . GLN A 1 3 ? 24.060 -29.273 0.695 1.00 15.36 ? 3 GLN A OE1 1 ATOM 25 N NE2 . GLN A 1 3 ? 24.285 -29.043 2.919 1.00 14.80 ? 3 GLN A NE2 1 ATOM 26 N N . ILE A 1 4 ? 19.296 -27.257 1.390 1.00 5.85 ? 4 ILE A N 1 ATOM 27 C CA . ILE A 1 4 ? 19.186 -25.923 0.828 1.00 6.50 ? 4 ILE A CA 1 ATOM 28 C C . ILE A 1 4 ? 20.307 -25.128 1.419 1.00 7.06 ? 4 ILE A C 1 ATOM 29 O O . ILE A 1 4 ? 20.463 -25.091 2.653 1.00 7.62 ? 4 ILE A O 1 ATOM 30 C CB . ILE A 1 4 ? 17.858 -25.236 1.219 1.00 7.43 ? 4 ILE A CB 1 ATOM 31 C CG1 . ILE A 1 4 ? 16.663 -26.039 0.683 1.00 5.15 ? 4 ILE A CG1 1 ATOM 32 C CG2 . ILE A 1 4 ? 17.844 -23.803 0.710 1.00 6.47 ? 4 ILE A CG2 1 ATOM 33 C CD1 . ILE A 1 4 ? 15.310 -25.511 1.157 1.00 3.33 ? 4 ILE A CD1 1 ATOM 34 N N . ILE A 1 5 ? 21.092 -24.520 0.547 1.00 8.84 ? 5 ILE A N 1 ATOM 35 C CA . ILE A 1 5 ? 22.070 -23.517 0.932 1.00 10.13 ? 5 ILE A CA 1 ATOM 36 C C . ILE A 1 5 ? 21.541 -22.234 0.357 1.00 8.03 ? 5 ILE A C 1 ATOM 37 O O . ILE A 1 5 ? 21.499 -22.049 -0.865 1.00 11.12 ? 5 ILE A O 1 ATOM 38 C CB . ILE A 1 5 ? 23.436 -23.817 0.337 1.00 10.53 ? 5 ILE A CB 1 ATOM 39 C CG1 . ILE A 1 5 ? 23.923 -25.168 0.835 1.00 15.06 ? 5 ILE A CG1 1 ATOM 40 C CG2 . ILE A 1 5 ? 24.428 -22.730 0.722 1.00 16.39 ? 5 ILE A CG2 1 ATOM 41 C CD1 . ILE A 1 5 ? 24.925 -25.794 -0.095 1.00 17.23 ? 5 ILE A CD1 1 ATOM 42 N N . ASN A 1 6 ? 21.115 -21.357 1.241 1.00 10.11 ? 6 ASN A N 1 ATOM 43 C CA . ASN A 1 6 ? 20.502 -20.104 0.841 1.00 12.76 ? 6 ASN A CA 1 ATOM 44 C C . ASN A 1 6 ? 21.312 -18.975 1.454 1.00 9.09 ? 6 ASN A C 1 ATOM 45 O O . ASN A 1 6 ? 21.573 -18.960 2.658 1.00 11.48 ? 6 ASN A O 1 ATOM 46 C CB . ASN A 1 6 ? 19.084 -20.060 1.331 1.00 6.77 ? 6 ASN A CB 1 ATOM 47 C CG . ASN A 1 6 ? 18.278 -18.961 0.716 1.00 7.76 ? 6 ASN A CG 1 ATOM 48 O OD1 . ASN A 1 6 ? 18.246 -18.799 -0.492 1.00 9.94 ? 6 ASN A OD1 1 ATOM 49 N ND2 . ASN A 1 6 ? 17.570 -18.216 1.554 1.00 8.14 ? 6 ASN A ND2 1 ATOM 50 N N . LYS A 1 7 ? 21.705 -18.041 0.619 1.00 11.12 ? 7 LYS A N 1 ATOM 51 C CA . LYS A 1 7 ? 22.493 -16.928 1.093 1.00 12.69 ? 7 LYS A CA 1 ATOM 52 C C . LYS A 1 7 ? 21.949 -15.681 0.449 1.00 11.09 ? 7 LYS A C 1 ATOM 53 O O . LYS A 1 7 ? 21.919 -15.559 -0.780 1.00 12.72 ? 7 LYS A O 1 ATOM 54 C CB . LYS A 1 7 ? 23.972 -17.143 0.780 1.00 17.87 ? 7 LYS A CB 1 ATOM 55 C CG . LYS A 1 7 ? 24.863 -16.146 1.511 1.00 30.37 ? 7 LYS A CG 1 ATOM 56 C CD . LYS A 1 7 ? 26.323 -16.558 1.581 1.00 41.21 ? 7 LYS A CD 1 ATOM 57 C CE . LYS A 1 7 ? 27.100 -15.594 2.476 1.00 47.29 ? 7 LYS A CE 1 ATOM 58 N NZ . LYS A 1 7 ? 28.528 -15.977 2.655 1.00 37.03 ? 7 LYS A NZ 1 ATOM 59 N N . LYS A 1 8 ? 21.464 -14.781 1.286 1.00 16.96 ? 8 LYS A N 1 ATOM 60 C CA . LYS A 1 8 ? 21.000 -13.491 0.826 1.00 21.37 ? 8 LYS A CA 1 ATOM 61 C C . LYS A 1 8 ? 21.936 -12.415 1.363 1.00 24.04 ? 8 LYS A C 1 ATOM 62 O O . LYS A 1 8 ? 22.262 -12.395 2.548 1.00 26.40 ? 8 LYS A O 1 ATOM 63 C CB . LYS A 1 8 ? 19.553 -13.243 1.245 1.00 21.45 ? 8 LYS A CB 1 ATOM 64 C CG . LYS A 1 8 ? 19.002 -11.955 0.648 1.00 37.01 ? 8 LYS A CG 1 ATOM 65 C CD . LYS A 1 8 ? 17.546 -11.686 0.987 1.00 44.74 ? 8 LYS A CD 1 ATOM 66 C CE . LYS A 1 8 ? 17.110 -10.359 0.387 1.00 36.45 ? 8 LYS A CE 1 ATOM 67 N NZ . LYS A 1 8 ? 15.692 -10.050 0.716 1.00 51.32 ? 8 LYS A NZ 1 ATOM 68 N N . LEU A 1 9 ? 22.374 -11.539 0.462 1.00 29.22 ? 9 LEU A N 1 ATOM 69 C CA . LEU A 1 9 ? 23.276 -10.432 0.778 1.00 39.96 ? 9 LEU A CA 1 ATOM 70 C C . LEU A 1 9 ? 22.668 -9.126 0.270 1.00 47.35 ? 9 LEU A C 1 ATOM 71 O O . LEU A 1 9 ? 22.264 -9.047 -0.894 1.00 41.42 ? 9 LEU A O 1 ATOM 72 C CB . LEU A 1 9 ? 24.631 -10.667 0.111 1.00 41.51 ? 9 LEU A CB 1 ATOM 73 C CG . LEU A 1 9 ? 25.501 -11.762 0.747 1.00 39.09 ? 9 LEU A CG 1 ATOM 74 C CD1 . LEU A 1 9 ? 26.149 -12.685 -0.276 1.00 39.35 ? 9 LEU A CD1 1 ATOM 75 C CD2 . LEU A 1 9 ? 26.578 -11.154 1.622 1.00 37.09 ? 9 LEU A CD2 1 ATOM 76 O OXT . LEU A 1 9 ? 22.566 -8.127 0.994 1.00 40.15 ? 9 LEU A OXT 1 HETATM 77 O O . HOH B 2 . ? 19.030 -15.879 -0.990 1.00 18.90 ? 101 HOH A O 1 HETATM 78 O O . HOH B 2 . ? 24.217 -20.011 3.547 1.00 17.03 ? 102 HOH A O 1 HETATM 79 O O . HOH B 2 . ? 14.656 -16.486 1.314 1.00 18.02 ? 103 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LEU 9 9 9 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 2 HOH HOH A . B 2 HOH 2 102 3 HOH HOH A . B 2 HOH 3 103 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4.8320000000 3 'crystal symmetry operation' 1_557 x,y,z+2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 9.6640000000 4 'crystal symmetry operation' 1_558 x,y,z+3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.4960000000 5 'crystal symmetry operation' 1_559 x,y,z+4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 19.3280000000 6 'crystal symmetry operation' 4_545 -x,-y-1,z+1/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000 -1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 2.4160000000 7 'crystal symmetry operation' 4_546 -x,-y-1,z+3/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000 -1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 7.2480000000 8 'crystal symmetry operation' 4_547 -x,-y-1,z+5/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000 -1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 12.0800000000 9 'crystal symmetry operation' 4_548 -x,-y-1,z+7/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000 -1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 16.9120000000 10 'crystal symmetry operation' 4_549 -x,-y-1,z+9/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000 -1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 21.7440000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-15 2 'Structure model' 1 1 2021-01-27 3 'Structure model' 1 2 2021-06-30 4 'Structure model' 1 3 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' diffrn_detector 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_diffrn_detector.detector' 12 4 'Structure model' '_database_2.pdbx_DOI' 13 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 6NK4 _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.target_criteria ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.method ? _em_3d_fitting.details ? # _em_3d_reconstruction.entry_id 6NK4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'KVQIINKKL Tau peptide' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6NK4 _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI 20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.citation_id ? _em_sample_support.details unspecified _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.id 1 _em_sample_support.method ? _em_sample_support.specimen_id 1 # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6NK4 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6NK4 _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 ILE N N N N 41 ILE CA C N S 42 ILE C C N N 43 ILE O O N N 44 ILE CB C N S 45 ILE CG1 C N N 46 ILE CG2 C N N 47 ILE CD1 C N N 48 ILE OXT O N N 49 ILE H H N N 50 ILE H2 H N N 51 ILE HA H N N 52 ILE HB H N N 53 ILE HG12 H N N 54 ILE HG13 H N N 55 ILE HG21 H N N 56 ILE HG22 H N N 57 ILE HG23 H N N 58 ILE HD11 H N N 59 ILE HD12 H N N 60 ILE HD13 H N N 61 ILE HXT H N N 62 LEU N N N N 63 LEU CA C N S 64 LEU C C N N 65 LEU O O N N 66 LEU CB C N N 67 LEU CG C N N 68 LEU CD1 C N N 69 LEU CD2 C N N 70 LEU OXT O N N 71 LEU H H N N 72 LEU H2 H N N 73 LEU HA H N N 74 LEU HB2 H N N 75 LEU HB3 H N N 76 LEU HG H N N 77 LEU HD11 H N N 78 LEU HD12 H N N 79 LEU HD13 H N N 80 LEU HD21 H N N 81 LEU HD22 H N N 82 LEU HD23 H N N 83 LEU HXT H N N 84 LYS N N N N 85 LYS CA C N S 86 LYS C C N N 87 LYS O O N N 88 LYS CB C N N 89 LYS CG C N N 90 LYS CD C N N 91 LYS CE C N N 92 LYS NZ N N N 93 LYS OXT O N N 94 LYS H H N N 95 LYS H2 H N N 96 LYS HA H N N 97 LYS HB2 H N N 98 LYS HB3 H N N 99 LYS HG2 H N N 100 LYS HG3 H N N 101 LYS HD2 H N N 102 LYS HD3 H N N 103 LYS HE2 H N N 104 LYS HE3 H N N 105 LYS HZ1 H N N 106 LYS HZ2 H N N 107 LYS HZ3 H N N 108 LYS HXT H N N 109 VAL N N N N 110 VAL CA C N S 111 VAL C C N N 112 VAL O O N N 113 VAL CB C N N 114 VAL CG1 C N N 115 VAL CG2 C N N 116 VAL OXT O N N 117 VAL H H N N 118 VAL H2 H N N 119 VAL HA H N N 120 VAL HB H N N 121 VAL HG11 H N N 122 VAL HG12 H N N 123 VAL HG13 H N N 124 VAL HG21 H N N 125 VAL HG22 H N N 126 VAL HG23 H N N 127 VAL HXT H N N 128 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 ILE N CA sing N N 38 ILE N H sing N N 39 ILE N H2 sing N N 40 ILE CA C sing N N 41 ILE CA CB sing N N 42 ILE CA HA sing N N 43 ILE C O doub N N 44 ILE C OXT sing N N 45 ILE CB CG1 sing N N 46 ILE CB CG2 sing N N 47 ILE CB HB sing N N 48 ILE CG1 CD1 sing N N 49 ILE CG1 HG12 sing N N 50 ILE CG1 HG13 sing N N 51 ILE CG2 HG21 sing N N 52 ILE CG2 HG22 sing N N 53 ILE CG2 HG23 sing N N 54 ILE CD1 HD11 sing N N 55 ILE CD1 HD12 sing N N 56 ILE CD1 HD13 sing N N 57 ILE OXT HXT sing N N 58 LEU N CA sing N N 59 LEU N H sing N N 60 LEU N H2 sing N N 61 LEU CA C sing N N 62 LEU CA CB sing N N 63 LEU CA HA sing N N 64 LEU C O doub N N 65 LEU C OXT sing N N 66 LEU CB CG sing N N 67 LEU CB HB2 sing N N 68 LEU CB HB3 sing N N 69 LEU CG CD1 sing N N 70 LEU CG CD2 sing N N 71 LEU CG HG sing N N 72 LEU CD1 HD11 sing N N 73 LEU CD1 HD12 sing N N 74 LEU CD1 HD13 sing N N 75 LEU CD2 HD21 sing N N 76 LEU CD2 HD22 sing N N 77 LEU CD2 HD23 sing N N 78 LEU OXT HXT sing N N 79 LYS N CA sing N N 80 LYS N H sing N N 81 LYS N H2 sing N N 82 LYS CA C sing N N 83 LYS CA CB sing N N 84 LYS CA HA sing N N 85 LYS C O doub N N 86 LYS C OXT sing N N 87 LYS CB CG sing N N 88 LYS CB HB2 sing N N 89 LYS CB HB3 sing N N 90 LYS CG CD sing N N 91 LYS CG HG2 sing N N 92 LYS CG HG3 sing N N 93 LYS CD CE sing N N 94 LYS CD HD2 sing N N 95 LYS CD HD3 sing N N 96 LYS CE NZ sing N N 97 LYS CE HE2 sing N N 98 LYS CE HE3 sing N N 99 LYS NZ HZ1 sing N N 100 LYS NZ HZ2 sing N N 101 LYS NZ HZ3 sing N N 102 LYS OXT HXT sing N N 103 VAL N CA sing N N 104 VAL N H sing N N 105 VAL N H2 sing N N 106 VAL CA C sing N N 107 VAL CA CB sing N N 108 VAL CA HA sing N N 109 VAL C O doub N N 110 VAL C OXT sing N N 111 VAL CB CG1 sing N N 112 VAL CB CG2 sing N N 113 VAL CB HB sing N N 114 VAL CG1 HG11 sing N N 115 VAL CG1 HG12 sing N N 116 VAL CG1 HG13 sing N N 117 VAL CG2 HG21 sing N N 118 VAL CG2 HG22 sing N N 119 VAL CG2 HG23 sing N N 120 VAL OXT HXT sing N N 121 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 62.906 _em_3d_crystal_entity.length_b 62.906 _em_3d_crystal_entity.length_c 4.832 _em_3d_crystal_entity.space_group_name 'P 61' _em_3d_crystal_entity.space_group_num 169 # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere air _em_crystal_formation.details '0.2 M lithium citrate, 20% PEG3350' _em_crystal_formation.instrument 'hanging drop vapor diffusion' _em_crystal_formation.lipid_mixture none _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 291 _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1850 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 95.7 _em_diffraction_shell.high_resolution 2.00 _em_diffraction_shell.low_resolution 2.15 _em_diffraction_shell.multiplicity 4.9 _em_diffraction_shell.num_structure_factors 174 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 97.1 _em_diffraction_stats.high_resolution 2.0 _em_diffraction_stats.num_intensities_measured 943 _em_diffraction_stats.num_structure_factors 943 _em_diffraction_stats.overall_phase_error 0 _em_diffraction_stats.overall_phase_residual 0.1 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.244 _em_diffraction_stats.r_sym 0.244 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.cell ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.1 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.11.1_2575 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AG0543022 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5V5B _pdbx_initial_refinement_model.details 'PDB entry 5V5B' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #