0.016058 0.009271 0.000000 0.000000 0.018542 0.000000 0.000000 0.000000 0.012156 0.00000 0.00000 0.00000 0000-0003-2720-6984 Lockbaum, G.J. 0000-0001-8667-541X Henes, M. Kosovrasti, K. 0000-0002-0048-889X Leidner, F. Nachum, G.S. Nalivaika, E.A. Bolon, D.N.A. 0000-0002-5036-676X KurtYilmaz, N. 0000-0003-2270-6613 Schiffer, C.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 62.276 62.276 82.266 C27 H37 N3 O7 S 547.664 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE Darunavir; TMC114; UIC-94017 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C N 8 N S N 9 N O N 10 N O N 11 N N N 12 N C N 13 N C N 14 N C N 15 N C N 16 N C N 17 R C N 18 N O N 19 S C N 20 N N N 21 N C N 22 N O N 23 N O N 24 R C N 25 N C N 26 N O N 27 R C N 28 N O N 29 N C N 30 N C N 31 S C N 32 N C Y 33 N C Y 34 N C Y 35 N C Y 36 N C Y 37 N C Y 38 N C N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N N N 77 S C N 78 N C N 79 N O N 80 N C N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N N N 97 N C N 98 N N N 99 N N N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N O N 123 N N N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 S C N 135 N C N 136 N O N 137 N C N 138 N C N 139 N O N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 R C N 151 N C N 152 N O N 153 N C N 154 N S N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N O N 171 N N N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N O N 191 N O N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 N C N 204 N C N 205 N O N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C Y 217 N C Y 218 N N Y 219 N C Y 220 N C Y 221 N N N 222 N O N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N O N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 S C N 241 N C N 242 N C N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C N 285 N C N 286 N C N 287 N C N 288 N N N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N S N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 R C N 370 N O N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N N Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 1 N sing N 2 N sing N 3 N sing Y 4 N doub Y 5 N sing Y 6 N sing N 7 N sing Y 8 N doub N 9 N sing Y 10 N sing N 11 N sing Y 12 N doub N 13 N sing N 14 N sing N 15 N doub N 16 N doub N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing Y 68 N doub Y 69 N sing N 70 N sing Y 71 N sing N 72 N sing Y 73 N doub N 74 N sing Y 75 N sing N 76 N sing Y 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing Y 218 N sing Y 219 N doub Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing Y 382 N doub Y 383 N sing Y 384 N sing N 385 N sing Y 386 N doub Y 387 N sing Y 388 N sing N 389 N sing Y 390 N sing Y 391 N doub N 392 N sing Y 393 N doub N 394 N sing Y 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N doub N 406 N sing N 407 N sing N 408 N sing N 409 N sing Y 410 N doub Y 411 N sing Y 412 N sing N 413 N sing Y 414 N doub N 415 N sing Y 416 N doub N 417 N sing Y 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing US Acs Chem.Biol. 1554-8937 14 2441 2452 10.1021/acschembio.9b00370 31361460 Picomolar to Micromolar: Elucidating the Role of Distal Mutations in HIV-1 Protease in Conferring Drug Resistance. 2019 10.2210/pdb6ops/pdb pdb_00006ops 100 1 N CCD 2018-03-03 RIGAKU SATURN 944 SINGLE WAVELENGTH M x-ray 1 1.54178 1.0 1.54178 ROTATING ANODE RIGAKU MICROMAX-007 HF 10831.833 Protease NL4-3 q7k 2 man polymer 547.664 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE 1 syn non-polymer 18.015 water 116 nat water no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF B,A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 99 pol 11676 Human immunodeficiency virus 1 562 Escherichia coli Plasmid Biological sequence pXC35 1 2.13 42.14 VAPOR DIFFUSION, HANGING DROP 19-26% (w/v) Ammonium Sulfate, 0.1M Bis-Tris-Methane-HCl Buffer pH 5.5 293 citation citation_author pdbx_audit_support chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Author supporting evidence Data collection Database references Refinement description Structure summary 1 0 2019-09-04 1 1 2019-11-27 1 2 2020-01-01 1 3 2023-10-11 _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID _pdbx_audit_support.funding_organization _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) P01-GM109767 N RCSB Y RCSB 2019-04-25 REL REL 017 017 SUBJECT OF INVESTIGATION 017 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE HOH water 6DGX PDB experimental model 017 1 2 017 017 101 A HOH 103 3 HOH HOH 101 B HOH 3 3 HOH HOH 102 B HOH 78 3 HOH HOH 103 B HOH 18 3 HOH HOH 104 B HOH 120 3 HOH HOH 105 B HOH 38 3 HOH HOH 106 B HOH 13 3 HOH HOH 107 B HOH 4 3 HOH HOH 108 B HOH 65 3 HOH HOH 109 B HOH 67 3 HOH HOH 110 B HOH 60 3 HOH HOH 111 B HOH 16 3 HOH HOH 112 B HOH 51 3 HOH HOH 113 B HOH 8 3 HOH HOH 114 B HOH 85 3 HOH HOH 115 B HOH 62 3 HOH HOH 116 B HOH 108 3 HOH HOH 117 B HOH 114 3 HOH HOH 118 B HOH 15 3 HOH HOH 119 B HOH 11 3 HOH HOH 120 B HOH 2 3 HOH HOH 121 B HOH 27 3 HOH HOH 122 B HOH 76 3 HOH HOH 123 B HOH 59 3 HOH HOH 124 B HOH 42 3 HOH HOH 125 B HOH 116 3 HOH HOH 126 B HOH 74 3 HOH HOH 127 B HOH 39 3 HOH HOH 128 B HOH 19 3 HOH HOH 129 B HOH 34 3 HOH HOH 130 B HOH 86 3 HOH HOH 131 B HOH 53 3 HOH HOH 132 B HOH 64 3 HOH HOH 133 B HOH 21 3 HOH HOH 134 B HOH 73 3 HOH HOH 135 B HOH 31 3 HOH HOH 136 B HOH 72 3 HOH HOH 137 B HOH 68 3 HOH HOH 138 B HOH 1 3 HOH HOH 139 B HOH 45 3 HOH HOH 140 B HOH 61 3 HOH HOH 141 B HOH 52 3 HOH HOH 142 B HOH 84 3 HOH HOH 143 B HOH 17 3 HOH HOH 144 B HOH 35 3 HOH HOH 145 B HOH 58 3 HOH HOH 146 B HOH 119 3 HOH HOH 147 B HOH 109 3 HOH HOH 148 B HOH 90 3 HOH HOH 149 B HOH 66 3 HOH HOH 150 B HOH 88 3 HOH HOH 151 B HOH 101 3 HOH HOH 152 B HOH 79 3 HOH HOH 153 B HOH 106 3 HOH HOH 154 B HOH 113 3 HOH HOH 155 B HOH 124 3 HOH HOH 156 B HOH 97 3 HOH HOH 157 B HOH 24 3 HOH HOH 158 B HOH 20 3 HOH HOH 159 B HOH 112 3 HOH HOH 160 B HOH 96 3 HOH HOH 161 B HOH 41 3 HOH HOH 162 B HOH 56 3 HOH HOH 163 B HOH 23 3 HOH HOH 164 B HOH 75 3 HOH HOH 165 B HOH 102 3 HOH HOH 166 B HOH 77 3 HOH HOH 167 B HOH 121 3 HOH HOH 201 A HOH 50 3 HOH HOH 202 A HOH 55 3 HOH HOH 203 A HOH 30 3 HOH HOH 204 A HOH 10 3 HOH HOH 205 A HOH 40 3 HOH HOH 206 A HOH 6 3 HOH HOH 207 A HOH 81 3 HOH HOH 208 A HOH 29 3 HOH HOH 209 A HOH 94 3 HOH HOH 210 A HOH 37 3 HOH HOH 211 A HOH 7 3 HOH HOH 212 A HOH 22 3 HOH HOH 213 A HOH 123 3 HOH HOH 214 A HOH 5 3 HOH HOH 215 A HOH 12 3 HOH HOH 216 A HOH 32 3 HOH HOH 217 A HOH 63 3 HOH HOH 218 A HOH 25 3 HOH HOH 219 A HOH 80 3 HOH HOH 220 A HOH 99 3 HOH HOH 221 A HOH 36 3 HOH HOH 222 A HOH 14 3 HOH HOH 223 A HOH 98 3 HOH HOH 224 A HOH 89 3 HOH HOH 225 A HOH 48 3 HOH HOH 226 A HOH 33 3 HOH HOH 227 A HOH 71 3 HOH HOH 228 A HOH 105 3 HOH HOH 229 A HOH 83 3 HOH HOH 230 A HOH 47 3 HOH HOH 231 A HOH 28 3 HOH HOH 232 A HOH 69 3 HOH HOH 233 A HOH 82 3 HOH HOH 234 A HOH 43 3 HOH HOH 235 A HOH 26 3 HOH HOH 236 A HOH 49 3 HOH HOH 237 A HOH 117 3 HOH HOH 238 A HOH 44 3 HOH HOH 239 A HOH 46 3 HOH HOH 240 A HOH 95 3 HOH HOH 241 A HOH 93 3 HOH HOH 242 A HOH 9 3 HOH HOH 243 A HOH 111 3 HOH HOH 244 A HOH 118 3 HOH HOH 245 A HOH 57 3 HOH HOH 246 A HOH 92 3 HOH HOH 247 A HOH 54 3 HOH HOH 248 A HOH 70 3 HOH HOH 249 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A author_and_software_defined_assembly PISA 2 dimeric gel filtration 4890 -32 8780 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N ILE 3 A N ILE 3 A O LEU 97 B O LEU 97 A O THR 96 B O THR 96 B N ASN 98 A N ASN 98 B N LEU 97 A N LEU 97 A O ILE 3 B O ILE 3 B N GLY 49 A N GLY 49 B O GLY 52 A O GLY 52 B N ILE 64 A N ILE 64 B O ALA 71 A O ALA 71 B O LEU 76 A O LEU 76 B N LEU 33 A N LEU 33 B N VAL 32 A N VAL 32 B O ILE 84 A O ILE 84 B O ILE 85 A O ILE 85 B N LEU 23 A N LEU 23 B O LYS 20 A O LYS 20 B N ILE 13 A N ILE 13 B N LYS 14 A N LYS 14 B O GLU 65 A O GLU 65 A N LYS 43 B N LYS 43 A O GLN 58 B O GLN 58 A N ILE 64 B N ILE 64 A O ALA 71 B O ALA 71 A O LEU 76 B O LEU 76 A N LEU 33 B N LEU 33 A N VAL 32 B N VAL 32 A O ILE 84 B O ILE 84 A O ILE 85 B O ILE 85 A N LEU 23 B N LEU 23 A O LYS 20 B O LYS 20 A N ILE 13 B N ILE 13 A N LYS 14 B N LYS 14 A O GLU 65 B O GLU 65 1 B CG LYS 7 A CG LYS 7 1 Y 1 B CD LYS 7 A CD LYS 7 1 Y 1 B CE LYS 7 A CE LYS 7 1 Y 1 B NZ LYS 7 A NZ LYS 7 1 Y 1 B CG ARG 41 A CG ARG 41 1 Y 1 B CD ARG 41 A CD ARG 41 1 Y 1 B NE ARG 41 A NE ARG 41 1 Y 1 B CZ ARG 41 A CZ ARG 41 1 Y 1 B NH1 ARG 41 A NH1 ARG 41 1 Y 1 B NH2 ARG 41 A NH2 ARG 41 1 Y 1 B CG LYS 43 A CG LYS 43 1 Y 1 B CD LYS 43 A CD LYS 43 1 Y 1 B CE LYS 43 A CE LYS 43 1 Y 1 B NZ LYS 43 A NZ LYS 43 1 Y 1 B CG LYS 45 A CG LYS 45 1 Y 1 B CD LYS 45 A CD LYS 45 1 Y 1 B CE LYS 45 A CE LYS 45 1 Y 1 B NZ LYS 45 A NZ LYS 45 1 Y 1 B CG LYS 55 A CG LYS 55 1 Y 1 B CD LYS 55 A CD LYS 55 1 Y 1 B CE LYS 55 A CE LYS 55 1 Y 1 B NZ LYS 55 A NZ LYS 55 1 Y 1 B CG GLN 61 A CG GLN 61 1 Y 1 B CD GLN 61 A CD GLN 61 1 Y 1 B OE1 GLN 61 A OE1 GLN 61 1 Y 1 B NE2 GLN 61 A NE2 GLN 61 1 Y 1 A CG LYS 7 B CG LYS 7 1 Y 1 A CD LYS 7 B CD LYS 7 1 Y 1 A CE LYS 7 B CE LYS 7 1 Y 1 A NZ LYS 7 B NZ LYS 7 1 Y 1 A CG ARG 41 B CG ARG 41 1 Y 1 A CD ARG 41 B CD ARG 41 1 Y 1 A NE ARG 41 B NE ARG 41 1 Y 1 A CZ ARG 41 B CZ ARG 41 1 Y 1 A NH1 ARG 41 B NH1 ARG 41 1 Y 1 A NH2 ARG 41 B NH2 ARG 41 1 Y 1 A CG LYS 45 B CG LYS 45 1 Y 1 A CD LYS 45 B CD LYS 45 1 Y 1 A CE LYS 45 B CE LYS 45 1 Y 1 A NZ LYS 45 B NZ LYS 45 1 Y 1 A CG LYS 55 B CG LYS 55 1 Y 1 A CD LYS 55 B CD LYS 55 1 Y 1 A CE LYS 55 B CE LYS 55 1 Y 1 A NZ LYS 55 B NZ LYS 55 1 Y 1 A CG GLN 61 B CG GLN 61 1 Y 1 A CD GLN 61 B CD GLN 61 1 Y 1 A OE1 GLN 61 B OE1 GLN 61 1 Y 1 A NE2 GLN 61 B NE2 GLN 61 1 Y 1 B B O O HOH HOH 105 155 2.05 1 B B O O HOH HOH 104 157 2.05 1 A A O O HOH HOH 214 244 2.06 1 A A O O HOH HOH 214 232 2.06 1 A A O O HOH HOH 223 237 2.08 1 A A O O HOH HOH 221 249 2.11 1 B B O O HOH HOH 129 149 2.13 1 A A O O HOH HOH 237 239 2.16 1 B B O O HOH HOH 116 163 2.07 1_555 5_554 1 B B O O HOH HOH 126 143 2.12 1_555 2_565 0.2510 0.2252 0.2252 2.08 25.625 541 10649 5.08 97.22 1 FREE R-VALUE 8.82 MOLECULAR REPLACEMENT 27.21 0.90 1.11 6DGX 2.08 25.625 116 1626 38 0 1472 0.003 1539 0.499 2100 13.802 895 0.050 255 0.003 261 0.3013 0.2662 2.2895 133 2413 89.00 0.3236 0.2782 2.6202 135 2520 93.00 0.2677 0.2391 3.2990 132 2547 94.00 0.2028 0.1912 20.5803 140 2597 94.00 2.08 50 6OPS 10660 1 24.0 9.8 97.0 2.080 2.2895 2546 1 data scaling HKL-3000 v703x phasing PHASER refinement PHENIX 1.12-2829 model building Coot 0.8.8 N HIV-1 Protease NL4-3 WT in complex with darunavir 1 N N 1 N N 2 N N 3 N N 3 N N B GLY 86 A GLY 86 HELX_P B THR 91 A THR 91 1 AA1 6 A GLY 86 B GLY 86 HELX_P A THR 91 B THR 91 1 AA2 6 HYDROLASE/HYDROLASE INHIBITOR HIV, NL4-3 PROTEASE, DRUG RESISTANCE, PROTEASE INHIBITOR, HYDROLASE INHIBITOR COMPLEX, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex Q8ULI9_9HIV1 UNP 1 1 Q8ULI9 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 1 99 6OPS 1 99 Q8ULI9 B 1 1 99 1 99 6OPS 1 99 Q8ULI9 A 1 1 99 1 GLN engineered mutation LYS 7 6OPS B Q8ULI9 UNP 7 7 2 GLN engineered mutation LYS 7 6OPS A Q8ULI9 UNP 7 7 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel B GLN 2 A GLN 2 B ILE 3 A ILE 3 A THR 96 B THR 96 A ASN 98 B ASN 98 B THR 96 A THR 96 B ASN 98 A ASN 98 A GLN 2 B GLN 2 A THR 4 B THR 4 B LYS 43 A LYS 43 B GLY 49 A GLY 49 B GLY 52 A GLY 52 B ILE 66 A ILE 66 B HIS 69 A HIS 69 B VAL 77 A VAL 77 B THR 31 A THR 31 B LEU 33 A LEU 33 B ILE 84 A ILE 84 B ILE 85 A ILE 85 B GLN 18 A GLN 18 B LEU 24 A LEU 24 B LEU 10 A LEU 10 B ILE 15 A ILE 15 B GLY 52 A GLY 52 B ILE 66 A ILE 66 A LYS 43 B LYS 43 A GLY 48 B GLY 48 A PHE 53 B PHE 53 A ILE 66 B ILE 66 A HIS 69 B HIS 69 A VAL 77 B VAL 77 A VAL 32 B VAL 32 A LEU 33 B LEU 33 A ILE 84 B ILE 84 A ILE 85 B ILE 85 A GLN 18 B GLN 18 A LEU 24 B LEU 24 A LEU 10 B LEU 10 A ILE 15 B ILE 15 A PHE 53 B PHE 53 A ILE 66 B ILE 66 binding site for residue 017 A 101 A 017 101 Software 25 A ASP 25 B ASP 25 25 1_555 A GLY 27 B GLY 27 25 1_555 A ALA 28 B ALA 28 25 1_555 A ASP 29 B ASP 29 25 1_555 A ASP 30 B ASP 30 25 1_555 A VAL 32 B VAL 32 25 1_555 A GLY 48 B GLY 48 25 1_555 A GLY 49 B GLY 49 25 1_555 A ILE 50 B ILE 50 25 1_555 A VAL 82 B VAL 82 25 1_555 A ILE 84 B ILE 84 25 1_555 A HOH 227 E HOH 25 1_555 B ARG 8 A ARG 8 25 1_555 B LEU 23 A LEU 23 25 1_555 B ASP 25 A ASP 25 25 1_555 B GLY 27 A GLY 27 25 1_555 B ALA 28 A ALA 28 25 1_555 B ASP 30 A ASP 30 25 1_555 B VAL 32 A VAL 32 25 1_555 B GLY 48 A GLY 48 25 1_555 B GLY 49 A GLY 49 25 1_555 B PRO 81 A PRO 81 25 1_555 B VAL 82 A VAL 82 25 1_555 B ILE 84 A ILE 84 25 1_555 B HOH 133 D HOH 25 1_555 169 P 61