0.017072 0.000000 0.000000 -0.000000 0.011558 0.000000 0.000000 -0.000000 0.021588 0.00000 0.00000 0.00000 0000-0002-4465-4220 Wang, Y.-F. 0000-0002-6157-2462 Pawar, S. 0000-0003-4876-7393 Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 58.574 86.517 46.322 C29 H41 N3 O8 S 591.716 (3R,3aS,4R,6aR)-4-(methylamino)hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C H2 O2 46.025 FORMIC ACID non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N S N 8 N O N 9 N O N 10 N N N 11 N C N 12 N C N 13 N C N 14 N C N 15 N C N 16 R C N 17 N O N 18 S C N 19 N N N 20 N C N 21 N O N 22 N O N 23 R C N 24 N C N 25 N O N 26 R C N 27 N O N 28 N C N 29 R C N 30 S C N 31 N N N 32 N C N 33 N C Y 34 N C Y 35 N C Y 36 N C Y 37 N C Y 38 N C Y 39 N C N 40 N O N 41 N C N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N N N 84 S C N 85 N C N 86 N O N 87 N C N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N C N 103 N N N 104 N C N 105 N N N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N O N 130 N N N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N O N 147 N O N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 R C N 158 N C N 159 N O N 160 N C N 161 N S N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N C N 171 N O N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C N 180 N C N 181 N C N 182 N O N 183 N N N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N O N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N N N 215 N C N 216 N C N 217 N O N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N C N 225 N O N 226 N C N 227 N O N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C Y 243 N C Y 244 N N Y 245 N C Y 246 N C Y 247 N N N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N O N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 S C N 267 N C N 268 N C N 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N C N 312 N C N 313 N C N 314 N N N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N S N 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N O N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 R C N 410 N O N 411 N C N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N N Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 N C Y 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C N 460 N O N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N N N 474 S C N 475 N C N 476 N O N 477 N C N 478 N C N 479 N C N 480 N O N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H Y 1 N doub Y 2 N sing Y 3 N sing Y 4 N doub Y 5 N doub N 6 N sing Y 7 N sing Y 8 N doub Y 9 N sing N 10 N sing N 11 N sing N 12 N sing Y 13 N sing N 14 N doub Y 15 N doub Y 16 N doub N 17 N sing Y 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing Y 242 N sing Y 243 N doub Y 244 N doub N 245 N sing Y 246 N sing N 247 N sing Y 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N doub N 355 N sing Y 356 N doub N 357 N sing Y 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing Y 419 N doub Y 420 N sing Y 421 N sing N 422 N sing Y 423 N doub Y 424 N sing Y 425 N sing N 426 N sing Y 427 N sing Y 428 N doub N 429 N sing Y 430 N doub N 431 N sing Y 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N doub N 443 N sing N 444 N sing N 445 N sing N 446 N sing Y 447 N doub Y 448 N sing Y 449 N sing N 450 N sing Y 451 N doub N 452 N sing Y 453 N doub N 454 N sing Y 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing US Biochem.Biophys.Res.Commun. BBRCA9 0146 1090-2104 514 974 978 10.1016/j.bbrc.2019.05.064 31092330 Structural studies of antiviral inhibitor with HIV-1 protease bearing drug resistant substitutions of V32I, I47V and V82I. 2019 10.2210/pdb6otg/pdb pdb_00006otg 100 1 N CCD 2017-06-28 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 1.0 22-BM APS 1.0 SYNCHROTRON APS BEAMLINE 22-BM 10754.703 Protease Q7K, V32I, L33I, I47V, L63I, C67A, V82I, C95A 2 man polymer 46.025 FORMIC ACID 4 syn non-polymer 591.716 (3R,3aS,4R,6aR)-4-(methylamino)hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 133 nat water no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMVGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PINIIGRNLLTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMVGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PINIIGRNLLTQIGATLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 99 pol 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) Biological sequence 1 2.73 54.92 VAPOR DIFFUSION, HANGING DROP 4.6 The protein (about 5 mg/mL) was preincubated with the inhibitor (dissolved in dimethylsulfoxide) at a molar ratio of 1:5. Crystals were grown from 0.1 m sodium acetate buffer, pH 4.6 and 2M NaCl as precipitant. Crystals were cryo-cooled in liquid nitrogen after soaking in 30% glycerol to prevent freezing. 298 citation pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Author supporting evidence Data collection Database references Refinement description 1 0 2019-05-29 1 1 2019-06-12 1 2 2019-12-04 1 3 2023-10-11 _citation.journal_volume _citation.page_first _citation.page_last _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) GM062920 United States National Institutes of Health/National Cancer Institute (NIH/NCI) GM53386 HIV1 Wild Type Protease with GRL-011-11A HIV1 Wild Type Protease with Darunavir HIV-1 protease triple mutants V32I, I47V, V82I with antiviral drug darunavir in space group P21212 N RCSB Y RCSB 2019-05-03 REL REL 4UY 4UY SUBJECT OF INVESTIGATION FMT FORMIC ACID 4UY (3R,3aS,4R,6aR)-4-(methylamino)hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate GOL GLYCEROL HOH water 3NU3 PDB experimental model FMT 531 2 FMT FMT 101 A FMT 533 2 FMT FMT 102 A FMT 534 2 FMT FMT 103 A 4UY 201 3 4UY 4UY 201 B GOL 521 4 GOL GOL 202 B FMT 532 2 FMT FMT 203 B HOH 1071 5 HOH HOH 201 A HOH 1056 5 HOH HOH 202 A HOH 1040 5 HOH HOH 203 A HOH 1127 5 HOH HOH 204 A HOH 1161 5 HOH HOH 205 A HOH 1090 5 HOH HOH 206 A HOH 1057 5 HOH HOH 207 A HOH 1010 5 HOH HOH 208 A HOH 1032 5 HOH HOH 209 A HOH 1100 5 HOH HOH 210 A HOH 1086 5 HOH HOH 211 A HOH 1029 5 HOH HOH 212 A HOH 1017 5 HOH HOH 213 A HOH 1151 5 HOH HOH 214 A HOH 1160 5 HOH HOH 215 A HOH 1098 5 HOH HOH 216 A HOH 1046 5 HOH HOH 217 A HOH 1036 5 HOH HOH 218 A HOH 1091 5 HOH HOH 219 A HOH 1037 5 HOH HOH 220 A HOH 1007 5 HOH HOH 221 A HOH 1003 5 HOH HOH 222 A HOH 1097 5 HOH HOH 223 A HOH 1009 5 HOH HOH 224 A HOH 1163 5 HOH HOH 225 A HOH 1045 5 HOH HOH 226 A HOH 1013 5 HOH HOH 227 A HOH 1093 5 HOH HOH 228 A HOH 1022 5 HOH HOH 229 A HOH 1154 5 HOH HOH 230 A HOH 1053 5 HOH HOH 231 A HOH 1052 5 HOH HOH 232 A HOH 1048 5 HOH HOH 233 A HOH 1158 5 HOH HOH 234 A HOH 1128 5 HOH HOH 235 A HOH 1026 5 HOH HOH 236 A HOH 1025 5 HOH HOH 237 A HOH 1082 5 HOH HOH 238 A HOH 1035 5 HOH HOH 239 A HOH 1152 5 HOH HOH 240 A HOH 1051 5 HOH HOH 241 A HOH 1118 5 HOH HOH 242 A HOH 1102 5 HOH HOH 243 A HOH 1015 5 HOH HOH 244 A HOH 1011 5 HOH HOH 245 A HOH 1087 5 HOH HOH 246 A HOH 1074 5 HOH HOH 247 A HOH 1067 5 HOH HOH 248 A HOH 1023 5 HOH HOH 249 A HOH 1084 5 HOH HOH 250 A HOH 1027 5 HOH HOH 251 A HOH 1068 5 HOH HOH 252 A HOH 1099 5 HOH HOH 253 A HOH 1066 5 HOH HOH 254 A HOH 1061 5 HOH HOH 255 A HOH 1055 5 HOH HOH 256 A HOH 1164 5 HOH HOH 257 A HOH 1159 5 HOH HOH 258 A HOH 1121 5 HOH HOH 259 A HOH 1119 5 HOH HOH 260 A HOH 1150 5 HOH HOH 261 A HOH 1105 5 HOH HOH 262 A HOH 1125 5 HOH HOH 263 A HOH 1126 5 HOH HOH 264 A HOH 1001 5 HOH HOH 1001 B HOH 1147 5 HOH HOH 1002 B HOH 1054 5 HOH HOH 1003 B HOH 1062 5 HOH HOH 1004 B HOH 1124 5 HOH HOH 1005 B HOH 1030 5 HOH HOH 1006 B HOH 1065 5 HOH HOH 1007 B HOH 1042 5 HOH HOH 1008 B HOH 1020 5 HOH HOH 1009 B HOH 1018 5 HOH HOH 1010 B HOH 1016 5 HOH HOH 1011 B HOH 1043 5 HOH HOH 1012 B HOH 1073 5 HOH HOH 1013 B HOH 1006 5 HOH HOH 1014 B HOH 1019 5 HOH HOH 1015 B HOH 1162 5 HOH HOH 1016 B HOH 1014 5 HOH HOH 1017 B HOH 1115 5 HOH HOH 1018 B HOH 1002 5 HOH HOH 1019 B HOH 1038 5 HOH HOH 1020 B HOH 1044 5 HOH HOH 1021 B HOH 1092 5 HOH HOH 1022 B HOH 1034 5 HOH HOH 1023 B HOH 1024 5 HOH HOH 1024 B HOH 1059 5 HOH HOH 1025 B HOH 1155 5 HOH HOH 1026 B HOH 1049 5 HOH HOH 1027 B HOH 1141 5 HOH HOH 1028 B HOH 1031 5 HOH HOH 1029 B HOH 1156 5 HOH HOH 1030 B HOH 1008 5 HOH HOH 1031 B HOH 1070 5 HOH HOH 1032 B HOH 1143 5 HOH HOH 1033 B HOH 1004 5 HOH HOH 1034 B HOH 1012 5 HOH HOH 1035 B HOH 1095 5 HOH HOH 1036 B HOH 1108 5 HOH HOH 1037 B HOH 1109 5 HOH HOH 1038 B HOH 1041 5 HOH HOH 1039 B HOH 1112 5 HOH HOH 1040 B HOH 1076 5 HOH HOH 1041 B HOH 1063 5 HOH HOH 1042 B HOH 1005 5 HOH HOH 1043 B HOH 1047 5 HOH HOH 1044 B HOH 1111 5 HOH HOH 1045 B HOH 1085 5 HOH HOH 1046 B HOH 1142 5 HOH HOH 1047 B HOH 1033 5 HOH HOH 1048 B HOH 1148 5 HOH HOH 1049 B HOH 1103 5 HOH HOH 1050 B HOH 1021 5 HOH HOH 1051 B HOH 1083 5 HOH HOH 1052 B HOH 1122 5 HOH HOH 1053 B HOH 1064 5 HOH HOH 1054 B HOH 1075 5 HOH HOH 1055 B HOH 1060 5 HOH HOH 1056 B HOH 1149 5 HOH HOH 1057 B HOH 1129 5 HOH HOH 1058 B HOH 1104 5 HOH HOH 1059 B HOH 1146 5 HOH HOH 1060 B HOH 1050 5 HOH HOH 1061 B HOH 1131 5 HOH HOH 1062 B HOH 1094 5 HOH HOH 1063 B HOH 1132 5 HOH HOH 1064 B HOH 1088 5 HOH HOH 1065 B HOH 1123 5 HOH HOH 1066 B HOH 1130 5 HOH HOH 1067 B HOH 1157 5 HOH HOH 1068 B HOH 1069 5 HOH HOH 1069 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A ILE 32 n 32 ILE 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A VAL 47 n 47 VAL 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A ILE 82 n 82 ILE 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B ILE 32 n 32 ILE 32 B ILE 33 n 33 ILE 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B VAL 47 n 47 VAL 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B ILE 63 n 63 ILE 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B ALA 67 n 67 ALA 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B ILE 82 n 82 ILE 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B ALA 95 n 95 ALA 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric none 4820 -24 9510 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O THR 96 B O THR 96 A N ASN 98 A N ASN 98 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 66 A N ILE 66 A O HIS 69 A O HIS 69 A O LEU 76 A O LEU 76 A N ILE 33 A N ILE 33 A N ILE 32 A N ILE 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ILE 66 B N ILE 66 B O HIS 69 B O HIS 69 B O LEU 76 B O LEU 76 B N ILE 33 B N ILE 33 B N ILE 32 B N ILE 32 B O ILE 84 B O ILE 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O LYS 20 B O LYS 20 B N ILE 13 B N ILE 13 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 -16.15 1.90 111.00 94.85 A A A CA CB CG1 ILE ILE ILE 50 50 50 B N 1 12.20 2.00 110.90 123.10 A A A CA CB CG2 ILE ILE ILE 50 50 50 B N 1 A A CD OE2 GLU GLU 65 65 0.072 0.011 1.252 1.324 N 19.383 0.48 -0.00 0.00 -0.05 -0.00 -0.43 0.973 0.964 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.17132 0.13158 0.13356 1.50 33.52 1818 35326 4.9 96.75 2.348 0.038 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.064 0.060 0.80 0.80 1.20 3NU3 1.50 33.52 133 1706 59 0 1514 0.019 0.013 1756 0.002 0.017 1798 2.242 1.714 2398 1.437 1.643 4185 7.001 5.000 227 35.757 22.353 68 13.536 15.000 323 8.495 15.000 10 0.261 0.200 258 0.011 0.020 1894 0.002 0.020 338 2.596 1.662 836 2.597 1.664 837 3.311 2.503 1052 3.316 2.504 1053 4.598 2.137 920 4.573 2.128 913 5.108 3.004 1333 4.742 19.781 1692 4.743 19.553 1673 4.247 3.000 3554 0.248 0.188 1.540 95 1953 20 72.75 17.7 1.50 50 6OTG 37188 0.998 0.059 0.024 0.064 0.997 1 26.6 6.7 96.8 0.493 1.5 1.55 3.1 2865 0.803 0.278 0.569 1.001 1 4.1 76.4 refinement REFMAC 5.8.0238 data reduction HKL-2000 data scaling HKL-2000 phasing PHASER 2.7.17 N HIV-1 protease triple mutants V32I, I47V, V82I with GRL-011-11A (a methylamine bis-Tetrahydrofuran P2-Ligand, sulfonamide isostere derivate) 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 2 N N 5 N N 5 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 AA1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 AA2 3 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 AA3 6 HYDROLASE/HYDROLASE inhibitor HIV-1 protease; antiviral inhibitors; drug resistance; X-ray crystallography, HYDROLASE-HYDROLASE inhibitor complex Q7SSI0_9HIV1 UNP 1 1 Q7SSI0 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGSTLNF 1 99 6OTG 1 99 Q7SSI0 A 1 1 99 1 99 6OTG 1 99 Q7SSI0 B 1 1 99 1 GLN engineered mutation LYS 7 6OTG A Q7SSI0 UNP 7 7 1 VAL engineered mutation ILE 32 6OTG A Q7SSI0 UNP 32 32 1 LEU engineered mutation ILE 33 6OTG A Q7SSI0 UNP 33 33 1 ILE engineered mutation VAL 47 6OTG A Q7SSI0 UNP 47 47 1 LEU engineered mutation ILE 63 6OTG A Q7SSI0 UNP 63 63 1 CYS engineered mutation ALA 67 6OTG A Q7SSI0 UNP 67 67 1 VAL engineered mutation ILE 82 6OTG A Q7SSI0 UNP 82 82 1 SER engineered mutation ALA 95 6OTG A Q7SSI0 UNP 95 95 2 GLN engineered mutation LYS 7 6OTG B Q7SSI0 UNP 7 7 2 VAL engineered mutation ILE 32 6OTG B Q7SSI0 UNP 32 32 2 LEU engineered mutation ILE 33 6OTG B Q7SSI0 UNP 33 33 2 ILE engineered mutation VAL 47 6OTG B Q7SSI0 UNP 47 47 2 LEU engineered mutation ILE 63 6OTG B Q7SSI0 UNP 63 63 2 CYS engineered mutation ALA 67 6OTG B Q7SSI0 UNP 67 67 2 VAL engineered mutation ILE 82 6OTG B Q7SSI0 UNP 82 82 2 SER engineered mutation ALA 95 6OTG B Q7SSI0 UNP 95 95 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B THR 4 B THR 4 A TRP 42 A TRP 42 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A ILE 32 A ILE 32 A ILE 33 A ILE 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B ILE 32 B ILE 32 B ILE 33 B ILE 33 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 binding site for residue FMT A 101 A FMT 101 Software 3 binding site for residue FMT A 102 A FMT 102 Software 4 binding site for residue FMT A 103 A FMT 103 Software 3 binding site for residue 4UY B 201 B 4UY 201 Software 31 binding site for residue GOL B 202 B GOL 202 Software 7 binding site for residue FMT B 203 B FMT 203 Software 3 A LYS 7 A LYS 7 3 1_555 A ARG 8 A ARG 8 3 1_555 A HOH 218 I HOH 3 1_555 A THR 12 A THR 12 4 1_555 A GLU 65 A GLU 65 4 1_555 A ALA 67 A ALA 67 4 1_555 A GLY 68 A GLY 68 4 1_555 A LYS 45 A LYS 45 3 1_555 A MET 46 A MET 46 3 1_555 B HOH 1014 J HOH 3 4_556 A ASP 25 A ASP 25 31 1_555 A GLY 27 A GLY 27 31 1_555 A ALA 28 A ALA 28 31 1_555 A ASP 29 A ASP 29 31 1_555 A ASP 30 A ASP 30 31 1_555 A ILE 32 A ILE 32 31 1_555 A VAL 47 A VAL 47 31 1_555 A GLY 48 A GLY 48 31 1_555 A GLY 49 A GLY 49 31 1_555 A ILE 50 A ILE 50 31 1_555 A PRO 81 A PRO 81 31 1_555 A ILE 82 A ILE 82 31 1_555 A ILE 84 A ILE 84 31 1_555 A HOH 230 I HOH 31 1_555 B ASP 25 B ASP 25 31 1_555 B GLY 27 B GLY 27 31 1_555 B ALA 28 B ALA 28 31 1_555 B ASP 29 B ASP 29 31 1_555 B ASP 30 B ASP 30 31 1_555 B VAL 47 B VAL 47 31 1_555 B GLY 48 B GLY 48 31 1_555 B GLY 49 B GLY 49 31 1_555 B ILE 50 B ILE 50 31 1_555 B PRO 81 B PRO 81 31 1_555 B ILE 82 B ILE 82 31 1_555 B ILE 84 B ILE 84 31 1_555 B HOH 1001 J HOH 31 1_555 B HOH 1012 J HOH 31 1_555 B HOH 1016 J HOH 31 1_555 B HOH 1026 J HOH 31 1_555 B HOH 1027 J HOH 31 1_555 A GLN 18 A GLN 18 7 1_556 A MET 36 A MET 36 7 1_556 A SER 37 A SER 37 7 1_556 B THR 12 B THR 12 7 1_555 B GLU 65 B GLU 65 7 1_555 B ALA 67 B ALA 67 7 1_555 B GLY 68 B GLY 68 7 1_555 B LYS 7 B LYS 7 3 1_555 B ARG 8 B ARG 8 3 1_555 B HOH 1020 J HOH 3 1_555 18 P 21 21 2